query gene name (DME1pt2AAU44279): global / partial tree
File name:
33 aa residues 59 OTU included.
Results of partial trees included / Partial tree including Ppa.
Assemble Job Id:
Tree job id: i62dUU
BP values out of 100
Analyzed by tekurata@nibb.ac.jp
Date: Wed Jun 14 14:52:43 JST 2006
AT5G04560 = NP_196076 Q8LK56 AAM77215 BAC42629 AAO63421 DME (DEMETER)/DME_ARATH Transcriptional activator DEMETER (DNA glycosylase-related protein DME)/DEMETER protein /unknown protein /At5g04570
AT4G34060 = NP_195132 O49498 CAA17566 CAB80123 AAU44533 unknown protein/DML3_ARATH DEMETER-like protein 3/hypothetical protein /hypothetical protein /hypothetical protein AT4G34060
Smo_DME1_2_1 Smo_DME1_1_1
36
AAU44279 Oryza sativa (japonica cultivar-group) unknow protein
AT2G36490 = NP_181190 Q9SJQ6 AAD24633 AAP37178 ROS1/ROS1_ARATH ROS1 protein (Repressor of silencing 1) (DEMETER-like protein 1)/hypothetical protein /ROS1
3749
XP_465792 Oryza sativa (japonica cultivar-group) BAD23135 putative transcriptional activator DEMETER/putative transcriptional activator DEMETER
Ppa_DME1_3_1
1510
Ppa_DME1_1_1
5
AT3G10010 = NP_187612 Q9SR66 AAF04422 endonuclease/iron ion binding /DML2_ARATH DEMETER-like protein 2/hypothetical protein
9
Ppa_DME1_2_1
25
AAS79601 Ipomoea trifida putative endonuclease III protein
54
XP_472059 Oryza sativa (japonica cultivar-group) CAE04435 OSJNBa0018J19.2/OSJNBa0018J19.2
AAP46637 Hordeum vulgare PG3
XP_465803 Oryza sativa (japonica cultivar-group) BAD23025 BAD23146 transcriptional activator-like/transcriptional activator-like /transcriptional activator-like
486388
NP_421075 Caulobacter crescentus CB15 AAK24243 endonuclease III family protein/endonuclease III family protein
YP_459229 Erythrobacter litoralis HTCC2594 ABC64432 endonuclease III family protein/endonuclease III family protein
66
ZP_00366085 Streptococcus pyogenes M49 591 COG0177: Predicted EndoIII-related endonuclease
NP_267227 Lactococcus lactis subsp. lactis Il1403 AAK05169 endonuclease III/endonuclease III (EC 4.2.99.18)
ZP_00382281 Lactococcus lactis subsp. cremoris SK11 COG0177: Predicted EndoIII-related endonuclease
9833
NP_814885 Enterococcus faecalis V583 AAO80955 endonuclease III/endonuclease III
YP_416792 Staphylococcus aureus RF122 CAI81005 endonuclease III-like protein/endonuclease III-like protein
NP_374566 Staphylococcus aureus subsp. aureus N315 YP_499987 Staphylococcus aureus subsp. aureus NCTC 8325 YP_186336 Staphylococcus aureus subsp. aureus COL NP_646159 Staphylococcus aureus subsp. aureus MW2 YP_040865 Staphylococcus aureus subsp
95
NP_390115 Bacillus subtilis subsp. subtilis str. 168 P39788 Bacillus subtilis AAA80005 AAB38457 CAB14150 Bacillus subtilis subsp. subtilis str. 168 endonuclease III/END3_BACSU Probable endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
YP_079533 Bacillus licheniformis ATCC 14580 YP_091942 AAU23895 AAU41249 endonuclease III/Nth /endonuclease III /Nth
70
BAA90651 Paenibacillus polymyxa End3
NP_242564 Bacillus halodurans C-125 BAB05417 endonuclease III (DNA repair)/endonuclease III (DNA repair)
55
ZP_00538249 Exiguobacterium sibiricum 255-15 EAM89072 Endonuclease III/Nth /Endonuclease III/Nth
5242237658
NP_275906 Methanothermobacter thermautotrophicus str. Delta H AAB85267 endonuclease III/endonuclease III
YP_447540 Methanosphaera stadtmanae DSM 3091 ABC56897 putative endonuclease III/putative endonuclease III
69
NP_228177 Thermotoga maritima MSB8 Q9WYK0 Thermotoga maritima AAD35453 Thermotoga maritima MSB8 endonuclease III/END3_THEMA Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) /endonuclease III
28
AAX96284 Oryza sativa (japonica cultivar-group) AAX96333 ABA92590 endonuclease III homologue/endonuclease III homologue /endonuclease III homologue
YP_023676 Picrophilus torridus DSM 9790 AAT43483 endonuclease III/endonuclease III
3520
YP_459228 Erythrobacter litoralis HTCC2594 ABC64431 endonuclease III/endonuclease III
5
ZP_00800212 Alkaliphilus metalliredigenes QYMF EAO81777 Endonuclease III/Nth /Endonuclease III/Nth
NP_252185 Pseudomonas aeruginosa PAO1 ZP_00973819 Pseudomonas aeruginosa 2192 ZP_00136878 Pseudomonas aeruginosa UCBPP-PA14 ZP_00968129 Pseudomonas aeruginosa C3719 AAG06883 Pseudomonas aeruginosa PAO1 AAT49817 synthetic construct endonucle
ZP_01033323 root COG0177: Predicted EndoIII-related endonuclease
19
NP_377359 Sulfolobus tokodaii str. 7 BAB66468 hypothetical endonuclease III/224aa long hypothetical endonuclease III
NP_341680 Sulfolobus solfataricus P2 CAA69576 Sulfolobus solfataricus AAK40470 Sulfolobus solfataricus P2 DNA endonuclease III, probable (ntH-1)/endonuclease III /DNA endonuclease III, probable (ntH-1)
40
YP_256111 Sulfolobus acidocaldarius DSM 639 AAY80818 endonuclease III/endonuclease III
53319
YP_075131 Symbiobacterium thermophilum IAM 14863 BAD40287 endonuclease III/endonuclease III
YP_395527 Lactobacillus sakei subsp. sakei 23K CAI55218 Putative DNA repair protein, endonuclease III/Putative DNA repair protein, endonuclease III
ZP_00050917 Magnetospirillum magnetotacticum MS-1 COG0177: Predicted EndoIII-related endonuclease
282
YP_076616 Symbiobacterium thermophilum IAM 14863 BAD41772 endonuclease III/endonuclease III
NP_558913 Pyrobaculum aerophilum str. IM2 AAF37269 Pyrobaculum aerophilum AAL63095 Pyrobaculum aerophilum str. IM2 DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)/putative DNA glycosylase /DNA-(apurinic or apyrimidinic site) l
130
NP_294652 Deinococcus radiodurans R1 AAF10505 endonuclease III, putative/endonuclease III, putative
YP_076495 Symbiobacterium thermophilum IAM 14863 BAD41651 putative endonuclease III/putative endonuclease III
ZP_00664369 Syntrophomonas wolfei subsp. wolfei str. Goettingen EAO23100 HhH-GPD/HhH-GPD
4023
ZP_01153568 Methanosaeta thermophila PT EAR49141 Helix-hairpin-helix motif:HhH-GPD/Helix-hairpin-helix motif:HhH-GPD
YP_474313 Synechococcus sp. JA-3-3Ab ABC99050 base excision DNA repair protein, HhH-GPD family/base excision DNA repair protein, HhH-GPD family
113
gnl|CMER|CMD139C_similar_to_endonuclease_III
ZP_00668294 Syntrophobacter fumaroxidans MPOB EAO19192 Endonuclease III/Nth /Endonuclease III/Nth
NP_279472 Halobacterium sp. NRC-1 AAG18952 NthA1/endonuclease III; NthA1
YP_330761 Natronomonas pharaonis DSM 2160 CAI50123 repair DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase /repair DNA N-glycosylase /DNA-(apurinic or apyrimidinic site) lyase
YP_136489 Haloarcula marismortui ATCC 43049 AAV46783 endonuclease III/endonuclease III
669225
ZP_00396645 Deinococcus geothermalis DSM 11300 EAL82564 Helix-hairpin-helix motif:HhH-GPD/Helix-hairpin-helix motif:HhH-GPD
NP_296158 Deinococcus radiodurans R1 AAF11977 endonuclease III/endonuclease III
89
XP_329225 Neurospora crassa XP_964657 Neurospora crassa N150 CAC10093 Neurospora crassa EAA35421 hypothetical protein ( (AL442164) conserved hypothetical protein/hypothetical protein ( (AL442164) conserved hypothetical protein /conserved hypothet
BAD37860 Oryza sativa (japonica cultivar-group) BAD37897 HhH-GPD base excision DNA repair protein-related-like/HhH-GPD base excision DNA repair protein-related-like
XP_365600 Magnaporthe grisea 70-15 hypothetical protein MG02302.4
2831410000111
0.100