query gene name (SHR.tree1): global / partial tree
File name:
262 aa residues 87 OTU included.
Results of partial trees included / Partial tree including Ppa.
Assemble Job Id:
Tree job id: WBQ901
BP values out of 100
Analyzed by t_aoyama@nibb.ac.jp
Date: Wed Jul 19 19:03:40 JST 2006
Ppa_SHR_8_1
Ppa_SHR_10_1
Ppa_SHR_38_1
Ppa_SHR_40_1
1007797
Ppa_SHR_5_1
Ppa_SHR_39_1
100
Smo_SHR_44_2
AAT81711 Oryza sativa (japonica cultivar-group) putative transcription factor
XP_493883 Oryza sativa (japonica cultivar-group) AAK73151 Oryza sativa AAU44199 Oryza sativa (japonica cultivar-group) putative SCARECROW gene regulator/putative SCARECROW gene regulator /putative scarecrow gene regulator
55
AAX95274 Oryza sativa (japonica cultivar-group) ABA95512 GRAS family transcription factor, putative/GRAS family transcription factor, putative
ABA99681 Oryza sativa (japonica cultivar-group) SCARECROW-like protein
9610063
Smo_SHR_30_1
Smo_SHR_38_2
90
AT4G37650 = NP_195480 CAB38304 CAB80430 AAF75234 SHR (SHORT ROOT); transcription factor/putative protein /putative protein /short-root protein
AAL69513 Arabidopsis thaliana putative SHORT-ROOT (SHR) protein
100
NP_911918 Oryza sativa (japonica cultivar-group) BAC20900 BAD30442 short-root protein-like/short-root protein-like /short-root protein-like
XP_468819 Oryza sativa (japonica cultivar-group) AAS07303 putative GRAS family transcription factor/putative GRAS family transcription factor
100100
Smo_SHR_67_1
Smo_SHR_21_1
100
Ppa_SHR_9_1
Ppa_SHR_1_1
96
Smo_SHR_43_1
Smo_SHR_11_2
423755100
Smo_SHR_13_1
Smo_SHR_78_1
100
Q4VYC8 Medicago truncatula CAJ00005 CAJ00010 NSP1_MEDTR Nodulation signaling pathway 1 protein/Nodulation Signaling Pathway 1 protein /Nodulation Signaling Pathway 1 protein
CAJ00015 Populus trichocarpa Nodulation Signaling Pathway 1 protein homologue 2
CAJ00014 Populus trichocarpa Nodulation Signaling Pathway 1 protein homologue 1
10010056
Ppa_SHR_20_1
Ppa_SHR_12_1
100
Ppa_SHR_19_1
100100
AAT93866 Oryza sativa (japonica cultivar-group) AAU90224 unknown protein/unknown protein
Ppa_SHR_3_1
XP_478947 Oryza sativa (japonica cultivar-group) BAC57752 BAC82980 putative short-root transcription factor/putative short-root transcription factor /putative short-root transcription factor
AT3G49950 = NP_190564 CAB62103 AAS99697 transcription factor/putative protein /At3g49950
100
Smo_SHR_14_1
53
Ppa_SHR_34_1
262310079100
AAM15907 Dubautia microcephala GIA/RGA-like gibberellin response modulator; DaGAI-A
AAM15906 Dubautia raillardioides GIA/RGA-like gibberellin response modulator; DaGAI-A
67
AAM15899 Argyroxiphium sandwicense subsp. macrocephalum GIA/RGA-like gibberellin response modulator; DaGAI-A
36
AAM15891 Madia sativa GIA/RGA-like gibberellin response modulator; DaGAI
64
AAM15884 Dubautia menziesii AAM15889 Argyroxiphium sandwicense subsp. macrocephalum AAM15890 GIA/RGA-like gibberellin response modulator; DaGAI-B /GIA/RGA-like gibberellin response modulator /GIA/RGA-like gibberellin response modulator; DaGAI-B
99
AAM15895 Calycadenia multiglandulosa GIA/RGA-like gibberellin response modulator; DaGAI
100
Q7Y1B6 Lycopersicon esculentum AAP22369 GAI_LYCES DELLA protein GAI (Gibberellic acid-insensitive mutant protein)/GAI-like protein
99
Q5BN23 Brassica rapa AAX33297 RGA1_BRACM DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)/DELLA protein
Q5BN22 Brassica rapa AAX33298 RGA2_BRACM DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)/DELLA protein
100
Q6EI05 Cucurbita maxima AAQ96165 GAIPB_CUCMA DELLA protein GAIP-B (Gibberellic acid-insensitive phloem protein B) (GAIP-B) (CmGAIP-B)/gibberellic acid insensitive phloem B
Q6EI06 Cucurbita maxima AAQ96164 GAIP_CUCMA DELLA protein GAIP (Gibberellic acid-insensitive phloem protein) (GAIP) (CmGAIP)/gibberellic acid insensitive phloem
9910079
AT1G66350 = NP_176809 Q9C8Y3 CAA12242 AAG52171 AAL05911 AAL49792 AAM20156 RGL1 (RGA-LIKE 1); transcription factor/RGL1_ARATH DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)/RGA-like /gibberellin regulatory protein, putative; 49974-51509 /
AT5G17490 = NP_197251 Q9LF53 CAC01893 BAC41902 AAO64840 RGL3; transcription factor/RGL3_ARATH DELLA protein RGL3 (RGA-like protein 3)/RGA-like protein /RGA-like protein /At5g17490
BAC42642 Arabidopsis thaliana putative RGA1
AT3G03450 = NP_186995 Q8GXW1 AAF01590 RGL2 (RGA-LIKE 2); transcription factor/RGL2_ARATH DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like protein 19)/RGA1-like protein
1001006571
Q8W127 Hordeum vulgare AAL66734 Hordeum vulgare subsp. vulgare SLN1_HORVU DELLA protein SLN1 (Slender protein 1)/nuclear transcription factor SLN1
Q9ST48 Zea mays CAB51557 DWRF8_MAIZE DELLA protein DWARF8 (Protein dwarf-8)/gibberellin response modulator
100100
CAI30892 Cucumis sativus CAI30893 SCARECROW/SCARECROW
BAB39155 Pisum sativum SCARECROW
100
Smo_SHR_52_1
100
Smo_SHR_49_1
Ppa_SHR_6_1
Ppa_SHR_41_1
10010035
Smo_SHR_84_1
Smo_SHR_15_1
100
Ppa_SHR_28_1
Ppa_SHR_42_1
Ppa_SHR_4_1
7810018
AT5G66770 = NP_201478 BAB08619 AAL32616 AAO00940 transcription factor/SCARECROW gene regulator /SCARECROW gene regulator /SCARECROW gene regulator
AAD05242 Lycopersicon esculentum CAC36399 lateral suppressor protein/lateral suppressor
8117
Smo_SHR_72_1
Ppa_SHR_27_1
Ppa_SHR_33_2
1009991110
ABA93922 Oryza sativa (japonica cultivar-group) GRAS family transcription factor, putative
Smo_SHR_23_1
10040
Smo_SHR_28_1
40
AAL31902 Arabidopsis thaliana AAN46855 AT4g17230/dl4650c /At4g17230/dl4650c
ABD65110 Brassica oleracea GRAS family transcription factor
100
AT1G21450 = NP_173566 AAD24403 AAF21043 AAF87898 AAK76507 AAM20276 AAM61062 SCL1 (SCARECROW-LIKE 1); transcription factor/scarecrow-like 1 /scarecrow-like 1 /scarecrow-like 1 protein /putative scarecrow 1 protein /unknown protein /scarecrow-like 1
NP_915059 Oryza sativa (japonica cultivar-group) BAB90355 BAC06237 scarecrow-like protein/putative chitin-inducible gibberellin-responsive protein /putative chitin-inducible gibberellin-responsive protein
100
Smo_SHR_47_1
XP_478905 Oryza sativa (japonica cultivar-group) XP_506430 Q8GVE1 Oryza sativa AAL61821 Oryza sativa (japonica cultivar-group) BAC55608 chitin-inducible gibberellin-responsive protein/PREDICTED OJ1127_E01.113 gene product /CIGR2_ORYSA Chitin-indu
AAK62666 Arabidopsis thaliana F17J6.12/F17J6.12
AT1G50600 = NP_175475 AAF87875 AAG51190 AAK59436 AAN41283 transcription factor/Putative transcription factor /scarecrow-like protein /putative scarecrow protein /putative scarecrow protein
100
AT5G48150 = NP_974903 NP_199626 AAF73237 BAA96995 BAC42147 PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor/PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor /phytochrome A signal transduction 1 protein /SCARECROW gene
AT2G04890 = NP_178566 AAD25580 AAF21044 AAM15339 BAD42973 BAD43753 BAD94984 SCL21 (SCARECROW-LIKE 21); transcription factor/putative SCARECROW gene regulator /scarecrow-like 21 /putative SCARECROW gene regulator /putative SCARECROW gene regulator /p
6041
Q69VG1 Oryza sativa BAD30510 Oryza sativa (japonica cultivar-group) CIGR1_ORYSA Chitin-inducible gibberellin-responsive protein 1/putative chitin-inducible gibberellin-responsive protein
NP_921084 Oryza sativa (japonica cultivar-group) AAM08829 ABB47346 putative SCARECROW gene regulator-like/Putative SCARECROW gene regulator-like /GRAS family transcription factor, putative
222481
Ppa_SHR_29_1
Ppa_SHR_25_1
100423938100771006777
0.100