query gene name (CHR25180.180_a): global / partial tree
File name:
237 aa residues 132 OTU included.
Results of partial trees included / Partial tree including Ppa.
Assemble Job Id:
Tree job id: NFnWH5
BP values out of 100
Analyzed by yoguri@nibb.ac.jp
Date: Wed May 24 10:59:39 JST 2006
AAH91795 Danio rerio LOC553504 protein
XP_689596 Danio rerio PREDICTED: similar to RAD26L hypothetical protein
100
AAF73858 Mus musculus putative repair and recombination helicase RAD26L
XP_341481 Rattus norvegicus PREDICTED: similar to putative repair and recombination helicase RAD26L
95
NP_001010895 Homo sapiens XP_528720 Pan troglodytes CAI16517 Homo sapiens RAD26L hypothetical protein/PREDICTED: similar to putative repair and recombination helicase RAD26L /RP11-346B7.2
XP_533502 Canis familiaris PREDICTED: similar to RAD26L hypothetical protein
45100100
CAD37001 Neurospora crassa related to DNA repair protein RAD26
XP_370448 Magnaporthe grisea 70-15 hypothetical protein MG06945.4
10050
Smo_CHR25_7_1
100
XP_387443 Gibberella zeae PH-1 EAA77865 hypothetical protein FG07267.1/hypothetical protein FG07267.1
XP_955594 Encephalitozoon cuniculi GB-M1 CAD27013 DNA repair and recombination protein/RAD26-LIKE DNA REPAIR AND RECOMBINATION PROTEIN
gnl|CMER|CMO092C_DNA_repair_and_recombination_protein_RAD26
NP_000115 Homo sapiens Q03468 AAA52397 AAO13487 CAH70291 excision repair cross-complementing rodent repair deficiency, complementation group 6/ERCC6_HUMAN DNA excision repair protein ERCC-6 (ATP-dependent helicase ERCC6) (Cockayne syndrome protein CS
XP_484360 Mus musculus XP_917558 PREDICTED: excision repair cross-complementing rodent repair deficiency, complementation group 6 isoform 1/PREDICTED: similar to DNA excision repair protein ERCC-6 (Cockayne syndrome protein CSB) isoform 5
XP_224627 Rattus norvegicus PREDICTED: similar to DNA excision repair protein ERCC-6 (Cockayne syndrome protein CSB)
10039
XP_534944 Canis familiaris PREDICTED: similar to DNA excision repair protein ERCC-6 (Cockayne syndrome protein CSB)
95
XP_421656 Gallus gallus PREDICTED: similar to DNA excision repair protein ERCC-6 (Cockayne syndrome protein CSB)
94
CAG09381 Tetraodon nigroviridis unnamed protein product
10044
Smo_CHR25_9_1
54
XP_447327 Candida glabrata CBS 138 CAG60264 hypothetical protein CAGL0I01694g/unnamed protein product
10095
XP_228546 Rattus norvegicus PREDICTED: similar to SNF2/RAD54 family protein
84
NP_014948 Saccharomyces cerevisiae CAA99622 Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early m
XP_447665 Candida glabrata CBS 138 CAG60602 hypothetical protein CAGL0I09614g/unnamed protein product
61
XP_456186 Kluyveromyces lactis NRRL Y-1140 CAG98894 unnamed protein product/unnamed protein product
92
XP_458541 Debaryomyces hansenii CBS767 CAG86673 hypothetical protein DEHA0D02365g/unnamed protein product
XP_716066 Candida albicans SC5314 EAK97058 hypothetical protein CaO19_7401/hypothetical protein CaO19.7401
6944
XP_368232 Magnaporthe grisea 70-15 hypothetical protein MG01012.4
NP_985508 Eremothecium gossypii AAS53332 Ashbya gossypii ATCC 10895 AFL040Wp/AFL040Wp
67100
XP_803224 Trypanosoma cruzi strain CL Brener XP_813640 EAN81778 Trypanosoma cruzi EAN91789 transcription activator/transcription activator /transcription activator, putative /transcription activator, putative
CAJ06440 Leishmania major DNA-dependent ATPase, putative; transcription activator
43
XP_951514 Trypanosoma brucei TREU927 AAQ15639 Trypanosoma brucei AAX79532 transcription activator/transcription activator, putative /transcription activator, putative
10077
CAE64562 Caenorhabditis briggsae Hypothetical protein CBG09312
NP_504523 Caenorhabditis elegans AAC25894 AAG29838 LEThal family member (let-418)/Lethal protein 418 /LET-418
99
NP_510140 Caenorhabditis elegans Q22516 CAA91798 CAA91810 AAG29837 CHromoDomain protein family member (chd-3)/CHD3_CAEEL Chromodomain helicase-DNA-binding protein 3 homolog (CHD-3)/Hypothetical protein T14G8.1 /Hypothetical protein T14G8.1 /CHD-3
100
XP_867794 Canis familiaris XP_867770 XP_232354 Rattus norvegicus XP_867816 Canis familiaris XP_867860 XP_867875 BAE32198 Mus musculus PREDICTED: similar to chromodomain helicase DNA binding protein 4 isoform 8/PREDICTED: similar to chromodomain
XP_708073 Danio rerio XP_685699 PREDICTED: similar to mKIAA4075 protein isoform 2/PREDICTED: similar to mKIAA4075 protein isoform 1
37
CAF91815 Tetraodon nigroviridis unnamed protein product
100100
AT2G13370 = NP_178970 AAD28668 BAD94038 ATP binding/ATP-dependent helicase/DNA binding /chromatin binding /helicase/nucleic acid binding /putative chromodomain-helicase-DNA-binding protein /pseudogene
XP_638708 Dictyostelium discoideum AX4 EAL65353 Dictyostelium discoideum hypothetical protein DDB0220640/CHD gene family protein containing chromodomain, helicase domain, and DNA-binding domain
998742
Ppa_CHR25_35_1
Smo_CHR25_25_1
100
NP_502082 Caenorhabditis elegans CAA92768 CAA92978 AAG16655 Phasmid Socket Absent family member (psa-4)/Hypothetical protein F01G4.1 /Hypothetical protein F01G4.1 /SWI2/SNF2-like protein; PSA-4
CAE62008 Caenorhabditis briggsae Hypothetical protein CBG06016
56
CAE63752 Caenorhabditis briggsae Hypothetical protein CBG08287
100
NP_508736 Caenorhabditis elegans AAK39219 C52B9.8/Hypothetical protein C52B9.8
85
XP_624270 Apis mellifera PREDICTED: similar to ENSANGP00000013716
XP_860440 Canis familiaris XP_859981 PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform b isoform 23 /PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromati
99100
gnl|CMER|CMM316C_homeotic_gene_regulator_BRAHMA
61
NP_594861 Schizosaccharomyces pombe 972h- Q9UTN6 Schizosaccharomyces pombe CAB54824 BAD11105 hypothetical protein SPAC1250.01/SNF21_SCHPO SNF2-family ATP dependent chromatin remodeling factor snf21 (ATP-dependent helicase snf21)/SPAC1250.01 /SNF2-f
XP_720068 Candida albicans SC5314 XP_719938 EAL01078 EAL01212 DNA helicase/DNA helicase /hypothetical protein CaO19.239 /hypothetical protein CaO19.7869
957510010040
2761_Cre
XP_639303 Dictyostelium discoideum AX4 EAL65942 Dictyostelium discoideum hypothetical protein DDB0185308/hypothetical protein DDB0185308
XP_653352 Entamoeba histolytica HM-1:IMSS EAL47966 DNA repair protein RAD54/DNA repair protein RAD54, putative
87
XP_814411 Trypanosoma cruzi strain CL Brener EAN92560 Trypanosoma cruzi DNA repair and recombination protein RAD54/DNA repair and recombination protein RAD54, putative
XP_818260 Trypanosoma cruzi strain CL Brener EAN96409 Trypanosoma cruzi DNA repair and recombination protein RAD54/DNA repair and recombination protein RAD54, putative
100
XP_828618 Trypanosoma brucei TREU927 EAN79506 Trypanosoma brucei DNA repair/recombination protein RAD54 /DNA repair and recombination protein RAD54, putative
82
CAJ04466 Leishmania major DNA repair and recombination protein RAD54, putative
10083
XP_658459 Aspergillus nidulans FGSC A4 EAA65685 hypothetical protein AN0855.2/hypothetical protein AN0855.2
XP_752881 Aspergillus fumigatus Af293 EAL90843 dsDNA-dependent ATPase Rad54b/dsDNA-dependent ATPase (Rad54b), putative
BAE56163 Aspergillus oryzae unnamed protein product
68100
XP_504352 Yarrowia lipolytica CLIB122 CAG79951 hypothetical protein/unnamed protein product
NP_986455 Eremothecium gossypii AAS54279 Ashbya gossypii ATCC 10895 AGL212Wp/AGL212Wp
NP_009629 Saccharomyces cerevisiae P38086 CAA53930 CAA85017 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during mitosis and me
XP_449430 Candida glabrata CBS 138 CAG62406 hypothetical protein CAGL0M01958g/unnamed protein product
6158
XP_455616 Kluyveromyces lactis NRRL Y-1140 CAG98324 unnamed protein product/unnamed protein product
98
XP_460638 Debaryomyces hansenii CBS767 CAG88970 hypothetical protein DEHA0F07106g/unnamed protein product
XP_717169 Candida albicans SC5314 XP_717090 EAK98114 EAK98195 hypothetical protein CaO19_5367/hypothetical protein CaO19_12827 /hypothetical protein CaO19.12827 /hypothetical protein CaO19.5367
971003421
XP_759823 Ustilago maydis 521 EAK84854 hypothetical protein UM03676.1/hypothetical protein UM03676.1
18
NP_593038 Schizosaccharomyces pombe 972h- Q09772 Schizosaccharomyces pombe CAA91068 AAP44116 hypothetical protein SPAC22F3.03c/RDH54_SCHPO Meiotic recombination protein rdh54 (ATP-dependent helicase rdh54) (RAD54 protein homolog 2)/SPAC22F3.03c /me
S62418 Schizosaccharomyces pombe S62418 hypothetical protein SPAC22F3.03c - fission yeast (Schizosaccharomyces pombe)
1003317
XP_869343 Bos taurus PREDICTED: similar to DNA repair and recombination protein RAD54B (RAD54 homolog B) isoform 2
NP_036547 Homo sapiens Q9Y620 AAD34331 AAH01965 RAD54 homolog B/RA54B_HUMAN DNA repair and recombination protein RAD54B (RAD54 homolog B)/RAD54B protein /RAD54 homolog B, isoform 1
BAE00304 Macaca fascicularis unnamed protein product
57
CAB63724 Homo sapiens hypothetical protein
9248
XP_850491 Canis familiaris XP_544181 PREDICTED: similar to DNA repair and recombination protein RAD54B (RAD54 homolog B) isoform 8/PREDICTED: similar to DNA repair and recombination protein RAD54B (RAD54 homolog B) isoform 7
90
XP_232785 Rattus norvegicus PREDICTED: similar to E130016E03Rik protein
NP_001034645 Mus musculus Q6PFE3 AAH57604 RAD54 homolog B/RA54B_MOUSE DNA repair and recombination protein RAD54B (RAD54 homolog B)/Rad54b protein
10099
AAH72215 Xenopus laevis MGC81308 protein
NP_990041 Gallus gallus Q9DG67 AAG09308 RAD54 homolog B/RA54B_CHICK DNA repair and recombination protein RAD54B (RAD54 homolog B)/Rad54b
61100
XP_688979 Danio rerio PREDICTED: similar to Rad54b
100
XP_624551 Apis mellifera PREDICTED: similar to Rad54b
XP_308811 Anopheles gambiae str. PEST EAA04280 ENSANGP00000007696/ENSANGP00000007696
94825
5368_Cre
Smo_CHR25_11_1
77
XP_639875 Dictyostelium discoideum AX4 EAL64871 Dictyostelium discoideum hypothetical protein DDB0186351/hypothetical protein DDB0186351
XP_650328 Entamoeba histolytica HM-1:IMSS EAL44942 RAD54 DNA repair protein/RAD54 DNA repair protein, putative
27
EAS04534 Tetrahymena thermophila SB210 SNF2 family N-terminal domain containing protein
19
XP_392959 Apis mellifera PREDICTED: similar to Hypothetical protein MGC69368
NP_476661 Drosophila melanogaster CAA71278 AAC24577 AAC26857 AAF51168 AAL39744 okra CG3736-PA/RAD54 /Rad54 homolog OKR /RAD54 DNA repair protein /CG3736-PA /LD35220p
EAL33203 Drosophila pseudoobscura GA17651-PA
100
XP_557901 Anopheles gambiae str. PEST EAL40287 ENSANGP00000026244/ENSANGP00000026244
6948
XP_870555 Bos taurus XP_881542 XP_614718 PREDICTED: similar to DNA repair and recombination protein RAD54-like (RAD54 homolog) (mRAD54) (mHR54) isoform 2/PREDICTED: similar to DNA repair and recombination protein RAD54-like (RAD54 homolog) (mRAD54) (
NP_003570 Homo sapiens Q92698 CAA66379 AAT38113 CAI22117 RAD54-like protein/RAD54_HUMAN DNA repair and recombination protein RAD54-like (RAD54 homolog) (hRAD54) (hHR54)/RAD54 /RAD54-like (S. cerevisiae) /RAD54-like (S. cerevisiae)
XP_216497 Rattus norvegicus PREDICTED: similar to RAD54
NP_033041 Mus musculus P70270 CAA66380 AAH21643 BAC40627 RAD54 like/RAD54_MOUSE DNA repair and recombination protein RAD54-like (RAD54 homolog) (mRAD54) (mHR54)/RAD54 /RAD54 like /unnamed protein product
616233
XP_532592 Canis familiaris PREDICTED: similar to DNA repair and recombination protein RAD54-like (RAD54 homolog) (hRAD54) (hHR54)
95
O12944 Gallus gallus AAB54115 RAD54_CHICK DNA repair and recombination protein RAD54-like (RAD54 homolog) (Putative recombination factor GdRad54)/putative recombination factor GdRad54
NP_001001241 Xenopus tropicalis AAH67986 RAD54-like/RAD54-like
5867
NP_957438 Danio rerio 1Z3I AAH46050 RAD54-like/X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF Eukaryotic Rad54/RAD54-like
100
XP_783733 Strongylocentrotus purpuratus PREDICTED: similar to DNA repair and recombination protein RAD54-like (RAD54 homolog) (mRAD54) (mHR54)
6648
NP_492438 Caenorhabditis elegans CAB63308 CAA22254 RADiation sensitivity abnormal/yeast RAD-related family member (rad-54) /Hypothetical protein W06D4.6 /Hypothetical protein W06D4.6
CAE67033 Caenorhabditis briggsae Hypothetical protein CBG12435
100100
XP_570462 Cryptococcus neoformans var. neoformans JEC21 EAL21293 Cryptococcus neoformans var. neoformans B-3501A AAW43155 Cryptococcus neoformans var. neoformans JEC21 DNA supercoiling/hypothetical protein CNBD3470 /DNA supercoiling, putative
XP_758230 Ustilago maydis 521 EAK83081 hypothetical protein UM02083.1/hypothetical protein UM02083.1
XP_722322 Candida albicans SC5314 XP_722208 EAL03441 EAL03565 hypothetical protein CaO19_12471/hypothetical protein CaO19_5004 /hypothetical protein CaO19.5004 /hypothetical protein CaO19.12471
XP_451134 Kluyveromyces lactis NRRL Y-1140 CAH02722 unnamed protein product/unnamed protein product
NP_011352 Saccharomyces cerevisiae P32863 AAA34949 CAA88534 CAA96875 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during veget
XP_447432 Candida glabrata CBS 138 CAG60369 hypothetical protein CAGL0I04224g/unnamed protein product
66
NP_984563 Eremothecium gossypii AAS52387 Ashbya gossypii ATCC 10895 AEL297Wp/AEL297Wp
286997
XP_500607 Yarrowia lipolytica CLIB122 CAG82840 hypothetical protein/unnamed protein product
67
NP_594290 Schizosaccharomyces pombe 972h- P41410 Schizosaccharomyces pombe CAA82750 CAB10100 hypothetical protein SPAC15A10.03c/RAD54_SCHPO DNA repair protein rhp54 (RAD54 homolog 1)/DNA repair protein /rad54
XP_751168 Aspergillus fumigatus Af293 EAL89130 dsDNA-dependent ATPase Rad54/dsDNA-dependent ATPase (Rad54), putative
BAE57593 Aspergillus oryzae unnamed protein product
72
XP_663131 Aspergillus nidulans FGSC A4 EAA62687 hypothetical protein AN5527.2/hypothetical protein AN5527.2
100
XP_388138 Gibberella zeae PH-1 EAA76579 hypothetical protein FG07962.1/hypothetical protein FG07962.1
CAD60786 Podospora anserina unnamed protein product
XP_959470 Neurospora crassa N150 XP_331124 Neurospora crassa EAA30234 CAF05853 hypothetical protein/hypothetical protein ( (AB032901) Rad54 homolog /hypothetical protein ( (AB032901) Rad54 homolog /Rad54 homolog MUS-25
BAA93079 Neurospora crassa Rad54 homolog
100
XP_361006 Magnaporthe grisea 70-15 BAC11858 Magnaporthe grisea hypothetical protein MG03549.4/recombinational repair protein
88708393745554100100
XP_953973 Theileria annulata strain Ankara CAI73296 Theileria annulata recombinational repair protein/recombinational repair (RAD54 homologue) protein
XP_627962 Cryptosporidium parvum Iowa II XP_668439 Cryptosporidium hominis TU502 EAK88469 Cryptosporidium parvum EAL38216 Cryptosporidium hominis RAD54 like SWI/SNF2 ATpase /DNA repair protein RAD54-like /RAD54 like SWI/SNF2 ATpase /DNA repair
89
XP_745142 Plasmodium chabaudi chabaudi CAH78699 Plasmodium chabaudi DNA repair protein rad54/DNA repair protein rad54, putative
XP_727033 Plasmodium yoelii yoelii str. 17XNL EAA18598 Plasmodium yoelii yoelii DNA repair protein RAD54/DNA repair protein RAD54-like-related
100
NP_704510 Plasmodium falciparum 3D7 CAD51329 DNA repair protein rad54, putative/DNA repair protein rad54, putative
10099
2096_Cre
Ppa_CHR25_5_1
Ppa_CHR25_19_1
100
Smo_CHR25_48_1
Smo_CHR25_1_1
10045
XP_467934 Oryza sativa (japonica cultivar-group) BAD17217 putative DNA repair protein rhp54/putative DNA repair protein rhp54
BAB02963 Arabidopsis thaliana DNA repair protein RAD54-like
AT3G19210 = NP_188552 ATP binding/ATP-dependent helicase/DNA binding /helicase/nucleic acid binding
100100100100916696489539
0.100