#NEXUS 
[MacClade 4.08 registered to cheng chaoyang, NIBB]


BEGIN DATA;
	DIMENSIONS  NTAX=27 NCHAR=2985;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|30688577|ref|NP 851056.1| HD2B (HISTONE DEACETYLASE 2B) [Arabidopsis thaliana] >gi|21689603|gb|AAM67423.1| AT5g22650/MDJ22 7'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GVAVT--------------------------------------------------------------------PKNATKVT-PEE--DSLVHI------------------------------------------------------------------------------SQASLDCTV-----KSGESVV-----------------------------------------------------------------------------------------------------------LSVT----------------------------------V--GGAK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVIGTLS-QDKFPQISFD--L-----------------VFDKEFE-LS----------------HSGT--KANVHFIGYKSPNIEQD---------DFT------------------------------------------------------------------------------------------------------------------------------------------------SSD------DEDV--------------------------------PEAVPAP-APTAVTANGNAGAAVVK-----ADTKPKAKPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------EVKPAEEKPESD-EEDES-----------------------------------------------------------------------------------DDED-ESE-------------------------------------------------------------------------------EDDDS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKGMDVDEDDSD----------------------DDEEED--SE-----------------------------------------------------------------------------------------------------------DEE-------------EEET-----------P-KK--PEPI-NKKRPNE-SV-SKTP----------------------------------------------------------------------VSGKKAKPAAAPASTPQKTEE--KKKG--GHTATPHPA-------------------------------------------------KKGGKSP---VNA-------NQ----------------------------------------SPKSGGQ----------------------------SSGG----------------------NNNKKPFNSGKQFGGSN----------NKGSNKGKGKGRA--------------------------------------------------------------------   [306]
'gi|11066137|gb|AAG28473.1| putative histone deacetylase [Arabidopsis thaliana] >gi|2854070|gb|AAC02539.1| putative histone deac'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GVAVT--------------------------------------------------------------------PKNATKVT-PEE--DSLVHI------------------------------------------------------------------------------SQASLDCTV-----KSGESVV-----------------------------------------------------------------------------------------------------------LSVT----------------------------------V--GGAK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVIGTLS-QDKFPQISFD--L-----------------VFDKEFE-LS----------------HSGT--KANVHFIGYKSPNIEQD---------DFT------------------------------------------------------------------------------------------------------------------------------------------------SSD------DEDV--------------------------------PEAVPAP-APTAVTANGNAGAAVVK-----ADTKPKAKPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------EVKPAEEKPESD-EEDES-----------------------------------------------------------------------------------DDED-ESE-------------------------------------------------------------------------------EDDDS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKGMDVDEDDSD----------------------DDEEED--SE-----------------------------------------------------------------------------------------------------------DEE-------------EEET-----------P-KK--PEPI-NKKRPNE-SV-SKTP----------------------------------------------------------------------VSGKKAKPAAAPASTPQKTE---KKKG--GHTATPHPA-------------------------------------------------KKGGKSP---VNA-------NQ----------------------------------------SPKSGGQ----------------------------SSGG----------------------NNNKKPFNSGKQFGGSN----------NKGSNKGKGKGRA--------------------------------------------------------------------   [305]
'gi|30688581|ref|NP 197657.2| HD2B (HISTONE DEACETYLASE 2B) [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M------------------------F---------------------------------------------------------------------------------------------------------------------------------------------------I------------------------------------------SLATN--------------------------------------------------------------------PPT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SISTD---------DFT------------------------------------------------------------------------------------------------------------------------------------------------SSD------DEDV--------------------------------PEAVPAP-APTAVTANGNAGAAVVK-----ADTKPKAKPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------EVKPAEEKPESD-EEDES-----------------------------------------------------------------------------------DDED-ESE-------------------------------------------------------------------------------EDDDS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKGMDVDEDDSD----------------------DDEEED--SE-----------------------------------------------------------------------------------------------------------DEE-------------EEET-----------P-KK--PEPI-NKKRPNE-SV-SKTP----------------------------------------------------------------------VSGKKAKPAAAPASTPQKTEE--KKKG--GHTATPHPA-------------------------------------------------KKGGKSP---VNA-------NQ----------------------------------------SPKSGGQ----------------------------SSGG----------------------NNNKKPFNSGKQFGGSN----------NKGSNKGKGKGRA--------------------------------------------------------------------   [223]
'gi|18407844|ref|NP 566872.1| HD2A (HISTONE DEACETYLASE 2A); nucleic acid binding / zinc ion binding [Arabidopsis thaliana] >gi|'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GIEVK--------------------------------------------------------------------SGKPVTVT-PEE--GILIHV------------------------------------------------------------------------------SQASLGECKN----KKGEFVP-----------------------------------------------------------------------------------------------------------LHVK----------------------------------V--GNQN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVLGTLS-TENIPQLFCD--L-----------------VFDKEFE-LS----------------HTWG--KGSVYFVGYKTPNIEPQ-----------------------------------------------------------------------------------------------------------------------------------------------------------GYSEE-----EEEE--------------------------------EEEVPAG-----------------------NAAKAVAKP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------KAKPAEVKPAVD-DEEDE-----------------------------------------------------------------------------------SDSD-GMD----------------------------------------------------------------------------EDDSDGED-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEE-------------EEPT-----------P-KK--PAS--SKKRANE-TT-PKAP----------------------------------------------------------------------VSAKKAKVAV----TPQKTD---EK--------------------------------------------------------------KKGGKAA-------------NQ----------------------------------------SPKSAS-----------------------------QVSC----------------------GSCKKTFNSGNAL-ESH----------NKAKHAAAK------------------------------------------------------------------------   [245]
'gi|2392769|gb|AAB70032.1| putative histone deacetylase [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GIEVK--------------------------------------------------------------------SGKPVTVT-PEE--GILIHV------------------------------------------------------------------------------SQASLGECKN----KKGEFVP-----------------------------------------------------------------------------------------------------------LHVK----------------------------------V--GNQN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVLGTLS-TENIPQLFCD--L-----------------VFDKEFE-LS----------------HTWG--KGSVYFVGYKTPNIEPQ-----------------------------------------------------------------------------------------------------------------------------------------------------------GYSEE-----EEEE--------------------------------EEEVPAG-----------------------NAAKAVAKP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------KAKPAEVKPAVD-DEEDE-----------------------------------------------------------------------------------SDSD-GMD----------------------------------------------------------------------------EDDSDGED-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEE-------------EEPT-----------P-KK--PAS--SKKRANE-TT-PKAP----------------------------------------------------------------------VSAKKAKVAV----TPQKTD---EK--------------------------------------------------------------KKGGKAA-------------NQ----------------------------------------SPKSAS-----------------------------QVSC----------------------GSCKKTFNSGNAL-ESH----------NKAKHAAANFFTALNAKCMIV------------------------------------------------------------   [257]
'gi|7804960|gb|AAF70196.1| putative histone deacetylase HD2 [Oryza sativa]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GLEVK--------------------------------------------------------------------PGQTVKCE-PED--ERFLHL------------------------------------------------------------------------------SQAALGESK-----KGSDNAV-----------------------------------------------------------------------------------------------------------MYVK----------------------------------T--DDQK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVIGTLS-ADKFPQIQFD--L-----------------VFDKEFE-LS----------------HTSK--TASVFFSGYKVSQPAEE---------DEM------------------------------------------------------------------------------------------------------------------------------------------------DFDSEEVEDEEEE--------------------------------EKIIP------APRAN-GKVEGKENEQK--KQGKTDSSASKS--------------------------------------------------------------------------------------------------------------------------------------------------------------------KAAV-----------NDD-----------------------------------------------------------------------------------DDDD-DSA----------------------------------------------------------------------------EDDSQDED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSPEDDDDDSSED---------------------DSSEDD--ED-----------------------------------------------------------------------------------------------------------ESD-------------EEDT-----------P-KK--PET--GKRKVAE-IV-LKTP----------------------------------------------------------------------SSDKKAKIAT---PSGQKTG---DKKG--VHVATPHPA-------------------------------------------------KQASKTP---VNDKSK----EK----------------------------------------SPKSGGG----------------------------SISC----------------------KSCSKTFNSEMAL-QSH----------SKAKHPAK-------------------------------------------------------------------------   [297]
'gi|50933033|ref|XP 476044.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|51854334|gb|AAU10714.1| putative hist'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GLEVK--------------------------------------------------------------------PGQTVKCE-PED--ERFLHL------------------------------------------------------------------------------SQAALGESK-----KGSDNAV-----------------------------------------------------------------------------------------------------------MYVK----------------------------------T--DDQK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVIGTLS-ADKFPQIQFD--L-----------------VFDKEFE-LS----------------HTSK--TASVFFSGYKVSQPAEE---------DEL------------------------------------------------------------------------------------------------------------------------------------------------DFDSEEVEDEEEE--------------------------------EKIIP------APRAN-GKVEGKENEQK--KQGKTDSSASKS--------------------------------------------------------------------------------------------------------------------------------------------------------------------KAAV-----------NDD-----------------------------------------------------------------------------------DDDD-DSD----------------------------------------------------------------------------EDDSEDED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSPEDDDDDSSED---------------------DSSEDD--ED-----------------------------------------------------------------------------------------------------------ESD-------------EEDT-----------P-KK--PET--GKRKVAE-IV-LKTP----------------------------------------------------------------------SSDKKAKIAT---PSGQKTG---DKKG--VHVATPHPA-------------------------------------------------KQASKTP---VNDKSK----EK----------------------------------------SPKSGGG----------------------------SISC----------------------KSCSKTFNSEMAL-QSH----------SKAKHPAK-------------------------------------------------------------------------   [297]
'gi|62321463|dbj|BAD94880.1| putative histone deacetylase (HD2B) [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NKKRPNE-SV-SKTP----------------------------------------------------------------------VSGKKAKPAAAPASTPQKTEE--KKKG--GHTATPHPA-------------------------------------------------KKGGKSP---VNA-------NQ----------------------------------------SPKSGGQ----------------------------SSGG----------------------NNNKKPFNSGKQFGGSN----------NKGSNKGKGKGRA--------------------------------------------------------------------   [100]
'gi|57900677|gb|AAW57802.1| putative histone deacetylase HD2 [Oryza sativa (japonica cultivar-group)]'                               -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GLEVK--------------------------------------------------------------------PGQTVKCE-PED--ERFLHL------------------------------------------------------------------------------SQAALGESK-----KGSDNAV-----------------------------------------------------------------------------------------------------------MYVK----------------------------------T--DDQK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVIGTLS-ADKFPQIQFD--L-----------------VFDKEFE-LS----------------HTSK--TAKV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDEEEE--------------------------------EKIIP------APRAN-GKVEGKENEQK--KQGKTDSSASKS--------------------------------------------------------------------------------------------------------------------------------------------------------------------KAAV-----------NDD-----------------------------------------------------------------------------------DDDD-DSD----------------------------------------------------------------------------EDDSEDED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSPEDDDDDSSED---------------------DSSEDD--ED-----------------------------------------------------------------------------------------------------------ESD-------------EEDT-----------P-KK--PET--GKRKVAE-IV-LKTP----------------------------------------------------------------------SSDKKAKIAT---PSGQKTG---DKKG--VHVATPHPA-------------------------------------------------KQASKTP---VNDKSK----EK----------------------------------------SPKSGGG----------------------------SISC----------------------KSCSKTFNSEMAL-QSH----------SKAKHPAK-------------------------------------------------------------------------   [274]
'gi|33667906|gb|AAQ24532.1| histone deacetylase [Solanum chacoense] >gi|73919938|sp|Q6V9I6|HD2A SOLCH Histone deacetylase 2a (HD'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GAEVK--------------------------------------------------------------------SGEPLTVQ-PGD--GMVLHL------------------------------------------------------------------------------SQASLGELKK----DKSESVC-----------------------------------------------------------------------------------------------------------LSVN----------------------------------I--DGKK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVLGTLN-SEKVPQQQFD--L-----------------VFDRDFE-LS----------------HNLK--SGSVYFFGYKATNPFEE---------EED------------------------------------------------------------------------------------------------------------------------------------------------DEDD-----YDES--------------------------------DEDIP------LTLANSGKPEPKEAGKS--NAGKDSASG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------KQKVRIVEPTKD-DEDES-----------------------------------------------------------------------------------SDDD-DSD------------------------------------------------------------------------------MGEDED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DS-----------------------------------------------------------------------------------------------------------DDS-------------EEET-----------P-KK--AEP--AKRRKAD-SA-TKTP----------------------------------------------------------------------VTDKKAKLTT-----PQKTD---GKKG-GGHVATPHPS-------------------------------------------------KQASK---------------------------------------------------------TPKSAG-----------------------------SHHC----------------------KPCNRSFGSEGAL-DSH----------SKAKHSAGK------------------------------------------------------------------------   [269]
'gi|78191430|gb|ABB29936.1| deacetylase-like protein [Solanum tuberosum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GVEVK--------------------------------------------------------------------AGQTLKVK-PEL--FKLIHV------------------------------------------------------------------------------SQAAIGEVKDV---KEAKYVP-----------------------------------------------------------------------------------------------------------LRLT----------------------------------V--GENS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YVIGTLS-AEDRPQLMFD--L-----------------VFEKEFE-LS----------------HGWK--NGSVHFIGYTADDPSGD---------EID------------------------------------------------------------------------------------------------------------------------------------------------SGDDV----FSDE--------------------------------ENVLE--------ALN-GKLEADVKDVK--PDAKKSAPVKD--------------------------VK-----------------------------------------------------------------------------------------------------------------------------------------NAKVAESKKEAESDEDDS-----------------------------------------------------------------------------------DDED-DS-----------------------------------------------------------------------------EDDSDVPLG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDG----------------------------------PEGMDFSGDSED----D-----------------DDSE----ED-----------------------------------------------------------------------------------------------------------DDS-------------EEET-----------P-KK--VEQ---KKRPAP-SP-KVAP----------------------------------------------------------------------GSGKKAKQAT----PDNKSG---GKKG----PATPF-A-------------------------------------------------KQNGKPA---FNGNNKPK--TQ----------------------------------------SPKSGGQ----------------------------FSGN----------------------KSNNKNFSGQKNFKGKQ----------GRK------------------------------------------------------------------------------   [299]
'gi|84468402|dbj|BAE71284.1| putative histone deacetylase [Trifolium pratense]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GTEVK--------------------------------------------------------------------SGESLKVE-PED--DKIIHL------------------------------------------------------------------------------SAACLGEVSKD---KGGEPVS-----------------------------------------------------------------------------------------------------------LYVK----------------------------------I--DNQK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQLGTLS-SEKIPQISFD--L-----------------VFEKEFE-LS----------------HNWK--YGSIFFTGFKMESLLVS---------DD-------------------------------------------------------------------------------------------------------------------------------------------------DEDS-----DDSI--------------------------------EEDNP------VNAAN-GKPEVEVK-----NGAKPGVNE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AQQNKTSDPKKKQKDIEN------------------------------------------------------------------------------DVSADDEED-SSE------------------------------------------------------------------------TDSDEDSSEDEP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VANGQIESSDDE----------------------DDSEED--DE-----------------------------------------------------------------------------------------------------------DSD-------------DEET-----------P-KK--TEG--GTKRVAE-SS-KKTP----------------------------------------------------------------------VAVKRAKFAT-----PEKTG---SKNG--VHVDTPYP--------------------------------------------------KQTVKSG---ANNKPPMK--QQ----------------------------------------TPQSTG-----------------------------DYSC----------------------KPCKRSFKTEDAL-GSH----------NRAKHSAK-------------------------------------------------------------------------   [304]
'gi|7716948|gb|AAF68624.1| histone deacetylase 2 isoform b [Zea mays] >gi|73919941|sp|Q9M4U5|HD2B MAIZE Histone deacetylase 2b ('    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GLEVK--------------------------------------------------------------------PGSTVKCE-PGH--GFILHV------------------------------------------------------------------------------SQAALGES------KKSDSAL-----------------------------------------------------------------------------------------------------------MYVK----------------------------------V--DDKK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LAIGTLS-IDKYPQIQFD--L-----------------VFNKEFE-LS----------------HTSK--TTSVFFSGYKVEQPIEG---------DEM------------------------------------------------------------------------------------------------------------------------------------------------DLDSE----DEEE--------------------------------ELNIP------VIKEN-GKADGKEEQK---NQEKAVAATASK--------------------------------------------------------------------------------------------------------------------------------------------------------------------SSLGLEKKSKDDSDDSDE-----------------------------------------------------------------------------------DESD-DSD----------------------------------------------------------------------------EDDSDDSD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGEGLSPDEGDDDSSDE---------------------DDTSDD---------------------------------------------------------------------------------------------------------------DEE-------------ETPT-----------P-KK--PEA--GKKRGAE-NA-LKTP----------------------------------------------------------------------LSDKKAKVAT---PPAQKTG---GKKG-ATHVATPHPA-------------------------------------------------K--GKTP---ANNDKLT---EK----------------------------------------SPKSGG-----------------------------SVPC----------------------KSCSKTFNSEMAL-QAH----------SKAKHGAK-------------------------------------------------------------------------   [303]
'gi|7716950|gb|AAF68625.1| histone deacetylase 2 isoform c [Zea mays] >gi|73919943|sp|Q9M4U4|HD2C MAIZE Histone deacetylase 2c ('    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GLEVK--------------------------------------------------------------------PGSTVKCE-PGY--GFVLHL------------------------------------------------------------------------------SQAALGES------KKSDNAL-----------------------------------------------------------------------------------------------------------MYVK----------------------------------I--DDQK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LAIGTLS-VDKNPHIQFD--L-----------------IFDKEFE-LS----------------HTSK--TTSVFFTGYKVEQPFEE---------DEM------------------------------------------------------------------------------------------------------------------------------------------------DLDSE----DEDE--------------------------------ELNVP------AVKEN-GKADEK-KQK---SQEKAVAAPSKS--------------------------------------------------------------------------------------------------------------------------------------------------------------------SP--DSKKSKDD-DDSDE-----------------------------------------------------------------------------------DETD-DSD----------------------------------------------------------------------------EDETDDSD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGLSPEEGDDDSSDE---------------------DDTSDD---------------------------------------------------------------------------------------------------------------EEE-------------DTPT-----------P-KK--PEV--GKKRAAE-SSVLKTP----------------------------------------------------------------------LSDKKAKVAT---PSSQKTG---GKKGAAVHVATPHPA-------------------------------------------------K--GKTI---VNNDKSVKSPKS----------------------------------------APKSG-------------------------------VPC----------------------KSCSKSFISETAP-QAH----------SKAKHGGK-------------------------------------------------------------------------   [300]
'gi|73919937|sp|O24591|HD2A MAIZE Histone deacetylase 2a (HD2a) (Zm-HD2a) (Nucleolar histone deacetylase HD2-p39) >gi|3650466|gb'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GLEVK--------------------------------------------------------------------PGSTVKCE-PGY--GFVLHL------------------------------------------------------------------------------SQAALGES------KKSDNAL-----------------------------------------------------------------------------------------------------------MYVK----------------------------------I--DDQK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LAIGTLS-VDKNPHIQFD--L-----------------IFDKEFE-LS----------------HTSK--TTSVFFTGYKVEQPFEE---------DEM------------------------------------------------------------------------------------------------------------------------------------------------DLDSE----DEDE--------------------------------ELNVP------VVKEN-GKADEK-KQK---SQEKAVAAPSKS--------------------------------------------------------------------------------------------------------------------------------------------------------------------SP--DSKKSKDD-DDSDE-----------------------------------------------------------------------------------DETD-DSD----------------------------------------------------------------------------EDETDDSD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGLSSEEGDDDSSDE---------------------DDTSDD---------------------------------------------------------------------------------------------------------------EEE-------------DTPT-----------P-KK--PEV--GKKRPAE-SSVLKTP----------------------------------------------------------------------LSDKKAKVAT---PSSQKTG---GKKGAAVHVATPHPA-------------------------------------------------K--GKTI---VNNDKSVKSPKS----------------------------------------APKSGG-----------------------------SVPC----------------------KPCSKSFISETAL-QAH----------SRAKMGASESQVQ--------------------------------------------------------------------   [307]
'gi|22597156|gb|AAN03465.1| nucleolar histone deacetylase HD2-P39 [Glycine max] >gi|73919939|sp|Q8LJS2|HD2A SOYBN Histone deacet'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GVEVK--------------------------------------------------------------------VGQTVTVD-PMDPVDSYIHI------------------------------------------------------------------------------SQVALGEAKKD---KPNEPVV-----------------------------------------------------------------------------------------------------------LYLK----------------------------------V--GEQK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVLGTLS-RDGIPHLSLD--L-----------------VLDSDSE-LS----------------HTSK--SASVFFCGYKVLTGNDN---------ASD------------------------------------------------------------------------------------------------------------------------------------------------FSDSS----EEDE--------------------------------ELALE--------GQDNGKPELKAEGAKVTKPSKSIPKI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAPAKAADPKKD-EDDDS-----------------------------------------------------------------------------------DDES-DDD-------------------------------------------------------------------------LAGEDESGSSD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EMDD----------------------DSNSEE--ES-----------------------------------------------------------------------------------------------------------DGD-------------DEET-----------PAKK--VDQ--GKKRPNE-SA-AKTP----------------------------------------------------------------------ISAKKAKTAT-----PEKTD---GKKS--VHVATPHPS-------------------------------------------------KKGGKTPNSTK---------GQ----------------------------------------TPNSAG-----------------------------QLSC----------------------ASCKKSFTNEAGL-QQH----------KKAKHGGQ-------------------------------------------------------------------------   [295]
'gi|30680179|ref|NP 195994.2| HD2C (HISTONE DEACETYLASE 2C); nucleic acid binding / zinc ion binding [Arabidopsis thaliana]'         -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GVEVK--------------------------------------------------------------------NGKPLHLD-PGL--DRLVHI------------------------------------------------------------------------------SQVALGESKN----NVTEPIQ-----------------------------------------------------------------------------------------------------------LYVT----------------------------------V--GSDK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLIGTLS-HEKFPQLSTE--I-----------------VLERNFA-LS----------------HTWK--NGSVFFSGYK-------------------------------------------------------------------------------------------------------------------------------------------------------------------PEDL-----IDDQ--------------------------------LEAAGFK-------------------AAPKSAAKQVNF------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLPNEDVKAKQD-DDADG-----------------------------------------------------------------------------------SEED-SSD-------------------------------------------------------------------------DDDSENSGDEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEKVTAESDSEE----------------------DDSSDD-EED-----------------------------------------------------------------------------------------------------------DSS-------------EEET-----------P-KK--PEE--PKKRSAEPNS-SKNP----------------------------------------------------------------------ASNKKAKFVT-----PQKTD---SKKP-HVHVATPHPS-------------------------------------------------KQAGKNSGGGSTGETSKQ--QQ----------------------------------------TPKSAG-----------------------------AFGC----------------------KSCTRTFTSEMGL-QSH----------TKAKHSAAA------------------------------------------------------------------------   [287]
'gi|7340659|emb|CAB82939.1| histone deacetylase-like protein [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GVEVK--------------------------------------------------------------------NGKPLHLD-PGL--DRLVHI------------------------------------------------------------------------------SQVALGESKN----NVTEPIQ-----------------------------------------------------------------------------------------------------------LYVT----------------------------------V--GSDK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLIGTLS-HEKFPQLSTE--I-----------------VLERNFA-LS----------------HTWK--NGSVFFSGYK-------------------------------------------------------------------------------------------------------------------------------------------------------------------PEDL-----IDDQ--------------------------------LEAAGFK----------GKWGLLYPPAAPKSAAKQVNF------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLPNEDVKAKQD-DDADG-----------------------------------------------------------------------------------SEED-SSD-------------------------------------------------------------------------DDDSENSGDEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEKVTAESDSEE----------------------DDSSDD-EED-----------------------------------------------------------------------------------------------------------DSS-------------EEET-----------P-KK--PEE--PKKRSAEPNS-SKNP----------------------------------------------------------------------ASNKKAKFVT-----PQKTD---SKKP-HVHVATPHPS-------------------------------------------------KQAGKNSGGGSTGETSKQ--QQ----------------------------------------TPKSAG-----------------------------AFGC----------------------KSCTRTFTSEMGL-QSH----------TKAKHSAAA------------------------------------------------------------------------   [296]
'gi|21360990|gb|AAM49770.1| HDT3 [Arabidopsis thaliana] >gi|22655422|gb|AAM98303.1| At5g03740/F17C15 160 [Arabidopsis thaliana]'     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GVEVK--------------------------------------------------------------------NGKPLHLD-PGL--DRLVHI------------------------------------------------------------------------------SQVALGESKN----NVTEPIQ-----------------------------------------------------------------------------------------------------------LYVT----------------------------------V--GSDK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLIGTLS-HEKFPQLSTE--I-----------------VLERNFA-LS----------------HTWK--NGSVFFSGYKVDASDPE------------------------------------------------------------------------------------------------------------------------------------------------------------PEDL-----IDDQ--------------------------------LEAAGFK-------------------AAPKSAAKQVNF------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLPNEDVKAKQD-DDADG-----------------------------------------------------------------------------------SEED-SSD-------------------------------------------------------------------------DDDSENSGDEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEKVTAESDSEE----------------------DDSSDD-EED-----------------------------------------------------------------------------------------------------------DSS-------------EEET-----------P-KK--PEE--PKKRSAEPNS-SKNP----------------------------------------------------------------------ASNKKAKFVT-----PQKTD---SKKP-HVHVATPHPS-------------------------------------------------KQAGKNSGGGSTGETSKQ--QQ----------------------------------------TPKSAG-----------------------------AFGC----------------------KSCTRTFTSEMGL-QSH----------TKAKHSAAA------------------------------------------------------------------------   [294]
'gi|76573369|gb|ABA46789.1| unknown [Solanum tuberosum]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKDV---KEAKYVP-----------------------------------------------------------------------------------------------------------LRLT----------------------------------V--GDNS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YVIGTLS-AEDRPQLMFD--L-----------------VFEKEFE-LS----------------HGWK--NGSVHFIGYTADDPSGD---------EID------------------------------------------------------------------------------------------------------------------------------------------------SGDDV----FSDE--------------------------------ENVLE--------ALN-GKLEADVKDVK--PDAKKSAPVKD--------------------------EK-----------------------------------------------------------------------------------------------------------------------------------------NAKIAASKKEAESDEDDS----------------------------------------------------------------------------------------DS-----------------------------------------------------------------------------EGDSDVPLG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDG----------------------------------PEGMDFSGDSED----D-----------------DDSE----E------------------------------------------------------------------------------------------------------------DDS-------------EEET-----------P-KK--VEQ---KKRPAP-SP-KVAP----------------------------------------------------------------------GSGKKAKQVT----PDNKSG---GKKG----PATPF-A-------------------------------------------------KQNGKPA---FNGNNKTK--NQ----------------------------------------SPKSGGQ----------------------------FSGN----------------------KSNNKNFSGQKQFQG-Q----------ARKEVEGLKDLFEEQRFYFLFIDVWSLWFKLFSLVLVGQFLMNVFVTRKFCPYLY-------------------------S   [313]
'gi|56785371|dbj|BAD82329.1| putative histone deacetylase 2 isoform b [Oryza sativa (japonica cultivar-group)]'                      -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDVD-----------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GVVIE--------------------------------------------------------------------PCNKKEIF-CPE--DTLYHL------------------------------------------------------------------------------TSVALDEAYG----LKDSNVK-----------------------------------------------------------------------------------------------------------VFVE----------------------------------V--NDEK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FAIGTLS-SKRHPHIKVD--F-----------------CFKKNFQ-LF----------------HTSL--ISKVAFCGYQVKNLGKF-----------------------------------------------------------------------------------------------------------------------------------------------------------------TDSEGDES--------------------------------DEEVPPD-------------NMIKEAQKSKLPAKSATVASAMQKA-----------------------------------------------------------------------------------------------------------------------------------------------------------------FVKEIEHYEKSKADDDNN-------------------------------------------------------------------ERYRDISVVGESTGNEDSSD-DAD---------------------------------------------------------------------------YEGKSSDEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ETTAKEGESTD----------------------EKETPAKEGE-----------------------------------------------------------------------------------------------------------SSD-------------EEET-----------PAKN--------TKEENEPVVTPLKT----------------------------------------------------------------------FPHEMAKIEA--PITDNKTGTNTSKRGSHLQVTNPHPA-------------------------------------------------KQAKRTPIKND---------------------------------------------------TPKRSA-----------------------------SYVC----------------------NSCKKTFNSSGALKDH-----------SKAKHPATN------------------------------------------------------------------------   [320]
'gi|50404847|ref|YP 053939.1| DNA-binding protein, putative [Paramecium tetraurelia] >gi|50057224|emb|CAH03208.1| DNA-binding pr'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M------------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GTQIS--------------------------------------------------------------------QGKTHKLT-AEE--ADVIHV------------------------------------------------------------------------------SNVAIS--------EGENKIQ-----------------------------------------------------------------------------------------------------------VYAK----------------------------------V--QGKE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FILANLE-KNKLEQVSLD--L-----------------YFRADQQ-VE----------------FGVKG-KGTIHVSGYIEPELDNE--------------------------------------------------------------------------------------------------------------------------------------------------------EGLSDDDEQTLSQDEEA--------------------------------SEESPEP-VQQTKKKEQSKQQPQQQLQQQTQKQNKEKQEQPQSKPQQGQQQQKPTQQQQKPQQ-----------------------------------------------------------------------------------------------------------------------------------------------QQPKPQQQQPKKADEEWD-----------------------------------------------------------------------------------DDED-DEG-------------------------------------------------------------------------LDDFDENDLDD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GDLDD----------------------DEDEDES------------------------------------------------------------------------------------------------------------------------------EEQK-----------PQQKFVKNNEGQKQKPKQEQTKPQQK----------------------------------------------------------------------GQQQQQQQKQQNQNQQQQKQQNQNQQQQ-----------------------------------------------------------NKGNQQQGQKPAQNQQQNQGKQ-----------------------------------------------------------------------------------------------------QQHPQNKGNPQQNKDNQNKNFNKNANKNQGGFKQKQQ-----------------------------------------------------------------------   [340]
'gi|89293080|gb|EAR91068.1| hypothetical protein TTHERM 00429890 [Tetrahymena thermophila SB210]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M------------------------F---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GCTVK--------------------------------------------------------------------KGNDHKFE-SED--HAILHL------------------------------------------------------------------------------SNVALGLNT-----KAGAQAS-----------------------------------------------------------------------------------------------------------VFAK----------------------------------V--DGKE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FVITHLT-QGKVEHTTLD--L-----------------YFRNDQE-VT----------------FGVKG-EAEVHLSGYFEPDHDEEDLYDDYPYGEEEFDDEED------------------------------------------------------------------------------------------------------------------------------------------EELEGEDDEDDDE--------------------------------EEEEEKP-KQQLQKEAAKKPAAQQQAAAATKKPAEVQKKAEPAAKAAEAKKQPSLQETLALK------------------------------------------------------------------------------------------------------------------------------------------------AAAAAKAKEALQSDEDDE-----------------------------------------------------------------------------------DDDDMDID-------------------------------------------------------------------------MEDDDEEDDDE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDFDDEEEGN-----------------DIDDDVSDSD-----------------------------------------------------------------------------------------------------------NENGTLSQMLKRTGAEQHQD-----------LNKKAKANNNQAVNKPQNQNQKPQQQ----------------------------------------------------------------------NQNQKQNNQQQGKPQQQQQNQNKQQH-------------------------------------------------------------NNQNKQNHQQHQNKQNQHQNKQ-----------------------------------------------------------------------------------------------------HNNNQQHHNKNQHHQNKNQHNKNAHKKN--------------------------------------------------------------------------------   [370]
'gi|68375442|ref|XP 689627.1| PREDICTED: similar to nucleolar phosphoprotein [Danio rerio]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLNKP------------------------------------------------------------------LEKPAAVKAAVQPAAAARKK------------------------------------------------------------------------------DTSSSSEESDSEEEPSKTPAK-----------------------------------------------------------------------------------------------------------VVKP----------------------------------V--TGTP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTVSTPVSAAQKKQDSSSED--S-----------------SSDSEDEPPA----------------KSAV--KAAVPV---KTPPPAKPAAPAVSSSDDSSSDEEDAPPSKKPKTGQFSAVPPPGTLTAQAPVKTPA----------------------------------------------------------------------------------------------AQAKAAPAKVTPAAEESSSSSCEESEE--------------------------------ESKKLAA-KVAPGKAAAKRAPPKKTPAKVTPAAKESSPSSSDSEEDEPPTPAKATPAKAAPAKATPAKA-----------------------------------------------------------------------------------------------------------------------------------------TPAKAAPAKKDDSSSSDS-------------------------------------------------ESSEDEAPAKPAATSKPVSTPKPGTKPAESSSASDSSS-DEDEGPQKKPVTTPVSKPAPAKPPAAKTTNKPAESSSSSSDSSSDEEPKKKPATTPVSKPTPAKPTPTVKTTNKQAESSSDSSSDEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DEPQKKAATTPASKPVATSAKTTPAAKPAESSSDSDSSSDEEAQKK-TTTPVPSKPATPAKPAAKAAESSSDS-----------------------------------------------------------------------------------------------------------SDS-------------EDET-----------PAAK--TAKPAAATATKSPAAASKPP----------------------------------------------------------------------VSASKPAAESSSSDSDSSSEDEKQAKTTVTPKAAPKPAVTPVNAKKAESSSSESSDSSDSETEAKKTPAKPVVANGKPVTKTPTSAAKTPAKKTAECSSSSDKKSDEEE----------------------------------------PSKT------PATKTPPATKTPPARKTPPATKTPPATKKQAAEAKAESSSSEESSEEEETPAATNGTQSAKKATPKNKKIATSTPQTFPRTKQKDSNAPFRRIREEDVEVDPRLKDNSFDAKMGANGDWGQKANNVLKFTKGKSFRHEKTKKKRGSYRGGAISTTVKLP   [766]
'gi|28856212|gb|AAH48067.1| LOC561131 protein [Danio rerio]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAQDSTVPSDLYQHVYSFLVENKFAK---------------------------------------------------------------------------------------------------------------------------------------------------AAKEFLRQAKVKPQDQNEDSLMDIFNFWVKSPETKKRKAVTSGPAAVNGPSAKKAKKDADSSSSEDSSSEEEQAAPAKKAVQVKAPPPKKPAAVAAKESSSEDSSDSEDEAPAKTTAKKPAAVKAAAQPAAAARKK------------------------------------------------------------------------------DTSSSSEESDSEEEPSKTPAK-----------------------------------------------------------------------------------------------------------VVKP----------------------------------V--TGTP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTVSTPVSAAQKKQDSSSED--S-----------------SSDSEDEPPA----------------KSAV--KAAVPV---KTPPPAKPAAPAVSSSDDSSSDEEDAPPSKKPKTGQFSAVPPPGTLTAQAPVKTPAASVKTVTPKAAAKKDSSSSDSSDSSSEDEAKKPAVKAAPAKAAPAKKAPTKVAPAQKKDSSSSDSSSSEDEATKPAVKVTPAKAASAKSTPAKVAQAKAAPAKVTPAAEESSSSSSEESEE--------------------------------ESKKPAA-KVAPVKATAKRAPAKKTPAKVTPAAKESSPSSSDSEEDEPPTPAKAT-----PAKATPAKA-----------------------------------------------------------------------------------------------------------------------------------------TPAKAAPAKKDDSSSSDS-------------------------------------------------ESSEDEAPAKPAATSKPVSTPKPGAKPAESSSASDSSS-DEDEGPQKKPVTTPISKPAPAKPPAAKTTNKPAESSSSSSDSSSDEEPKKKPATTPVSKPTPAKPTPTVKTTNKQAESSSDSSSDEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKPQKKAATTPASKPVATSAKTTPAAKPAESSSDSDSSSDEEAQKKTTTTPVPSKPATPAKPAAKAAESSSDS-----------------------------------------------------------------------------------------------------------SDS-------------EDET-----------PAAK--TAKPAAATTTKSPAAASKPP----------------------------------------------------------------------VSASKPAAESSSSDSDSSSEDEKQAKTTVTPKAAPKPAVTPVNAKKAESSSSESSDSSDSETEAKKTPAKPVVANGKPVTKTPTSAAKTPAKKTAESSSSSDSSSDEEE----------------------------------------PSKTPAAKTPPATKTPPATKTPPATKTPPATKTPPATKKQAAEAKAESSSSEESSEEEETPAATNGTQSAKKATPKKKKK-----------------------------------------------------------------------------------------   [909]
lcl|6887_Cre_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA-----------------------FFTPTCVCRCAGTVESVALCADGSPNPKCCPFKKYFRCCRALSCMQRSTPAGKCVVREKDLLPGQQFVGRVFAVPAASTDCYAYSFDTTRVCGSDRAFPAGSVYDACETRAVSRDADGCAKLPGYTFYRGWALPPEEATSWRVDDGTQWDKVAG-------------------------------------GMAAKAAAARDMPLMAGRCSALGSCVAFVSSGNSTDLLYQLPARSHWRLTAPDADYCAGIYAKEPPPDSCPRIPGYLFTPLHTLD-----ANA------------------------------------------------------------------------------STSAAGSATSSSTSSGGSGSF-----------------------------------------------------------------------------------------------------------ITIAGSGPCADCADNSALALRCEAYGSACAGFSNYHGLI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSAGSGS-DGSSPALLTDAPLAQFTSTPCVGMFSRTGRAFPAEVEELDRLLCGQLVYCTGQLRYHAAGVQASGISSSGSSSSGGSSG---------------------------------------------------------------GSSYYVDIAVDVLTDFALPRQLLDASGGGFKSLPAVRSLTVRCGGGSGLLGSRFPLGLAALLPFLRELRLSGCRLGGQLPDELASLKYLRVLDLSDNGLSGPLPESWANMTLGYLNLSRNALTGGVPLSWRRLITPPAAAPLPPP-SPPPPRSPPDSLTAAVALAASGTGGMAAGTPASTPISTLATAAALLVADLSYNQLEGAVQHDYVYSSCVDGEMRMSLAGTAPPGALVDALGSGGRPTFLLHGNPGVAAWAGAYQYAAADVDALEGGGINMCGANGYKVALGVLWGVFGALLLLVVGIAVYGAVRESRRQQRLGGGGGGSGRFGFMSDHDRHRQHPFPPRASDQDGDGHALDTDDDG-------------------------------------------------TVPNSPSAAHMADSPGRAPRGIGGAGVGGGNDDEDDDD-DGSGGRRGAVAVVSSSATASAAAAAAARCGARGRGLWATAGGALQRLWGKRWFRRLVLLVRVAYLVADVALDVAVTVWLYSDGASSSSAVCLAFIVITQGVIGIALLASLSHHFFASRTLVLLLSPLLLVLMPVVGPVLAVANIRNSDVPLVFWRYLELVEFCVALLQAPAESVTQSVVYAQQNLMGNGMYMNHALFIASIVFSLGDMVIAAAKLCRYKRGPLRRVQVALTHLDKVRDPADYRTRLMADYGPHAGSGGALGRYEPTASHLATPLTGGAGGGGGSGLLELQPAEGAGEGVGAATAAAAAVSAAASAAVAAATSGSGGGMSPMGFTPTSSRFRPPSLLQPSTSQRAGGGGNSSGGMPSTPSRPGGDGSAPATGSGANPADPAGGDVAAMWGGAGALVLAAGAVGASGAGGSLERRSRSVPAEGGSLGGGPPLHVMAPLAGSFSADASLAGAGQPPHHHHHHPPLTSSTSWAPMQTPPSMAARNRRNSGSAGGGSGSGGLPPPHPGHPTASATASSISLQASGLPAAA--SSSAAGAAAASTSTASTAASPYQPQFASTYQNPHFATTYQNPHFSQIDSAEARYLAAAAASAAAALSDAASSDGTGGGGAGSGSHQRLSTLSSAPAAAAGGGYGQRPGSSNGTGARPLGGNTSIPEPASLGGASPPGAARQGQWPGQRSTGGGGGSPLGPGVVLGGSGGAGPPRPFFGGAGMGSATPGSYGASGSVSRSMSPLRGVAATAAADAATRSGSASPARRREGLLGLSIAVPPSPGSEAEVTVVRMQSSALTPEGNTGGLRHLSPASASVPMSVSSHGGTPSVARSGPHPLAAASTTSAPVPAAAALALAAAAQQQQQQQQQQHEEGSGRGPSDFMSG----------------------------------------------------------------   [1668]
gnl|CMER|CMM134C_hypothetical_protein                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPPRETNDHQAALESANAHYPVQAHCVQDMEEEEHDPSLTYKEGVPGPTLSF--I---------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------GLKVP--------------------------------------------------------------------PGRAVEHR-VED--GEYVVI------------------------------------------------------------------------------SSASLGI-KKP---KGKRSVL-----------------------------------------------------------------------------------------------------------VMED----------------------------------L--DVPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RGFS------DDEDSSADSD--------------------------E-VA----------------SESE--SSSGSDSGSGSSEADEA------------------------------------------------------------------------------------------------------------------------------------------------------MVNGIDEDASDSEDDEGDS--------------------------------QESSPES-SATGTGS----------------------------------------------------EE-----------------------------------------------------------------------------------------------------------------------------------------SADEALVSSEDESASEVS-----------------------------------------------------------------------------------DDED-DSFPDTPVIRSIPVCVLLPGKVESQSLNLEIVGPRVLHFRTYGKDTIYISGHTEIEIDEYDSETDAEYDDDVEMSYEGSESDDGIAE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YSASGSSSASDDEPLPSPPLSGHRRSVRITEIMESEQADRVKHA-----------------------------------------------------------------------------------------------------------DADRTAHRTRARSGATAAATDAGALTSGGAQTSTR--KAEQKNRKEGASSAGDAKTG----------------------------------------------------------------------LSSSAADGTSKRGTTPRSESSTDQSHAGTKHVRFPETLEPE----------------------------------------------ERGKKRSASERSSNPAAAAAAS----------------------------------------SVAAANALSG-------------------------SVSC----------------------STCGKSFKMASALEQHM-----------KAKHAA--------------------------------------------------------------------------   [483]
;
END;


BEGIN CODONS;
	CODESET  * UNTITLED = Universal: all ;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
	EXSET * UNTITLED  =  1-2583 2590 2593 2598-2667 2678-2682 2688-2754 2756-2877 2891-2985;
END;


BEGIN MacClade;
	Version 4.0  87;
	LastModified -1062948922;
	FileSettings editor  '0' '0' '1' '1';
	Singles 100;
	Editor 00011001111111100100010010 '1' '8' Geneva '9' '490' '1' all;
	EditorPosition  '94' '263' '915' '1449';
	TreeWindowPosition  '46' '6' '981' '1630';
	ListWindow Characters closed Geneva '9' '50' '10' '273' '366' 000;
	ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000;
	ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ;
	ChartWindowPosition  '52' '30' '968' '1620';
	StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220';
	WindowOrder  Data;
	OtherSymbols &/ 00 ?-;
	Correlation  '0' '0' '1000' '0' '0' 10011010;
	Salmo 00000001;
	EditorFile  '4';
	ExportHTML _ MOSS  '100' 110000;
	PrettyPrint 10;
	EditorToolsPosition  '803' '194' '115' '165';
	TreeWindowProgram 10;
	TreeWindow 0000;
	Continuous  '0' '3' 1;
	Calculations 0000001;
	SummaryMode  '0' '0' 0;
	Charts  Geneva '9' (normal) 0010;
	NexusOptions  '0' '0' '50' 001011001;
	TipLabel  '1';
	TreeFont  Geneva '9' (normal);
	TreeShape  1.0 1.0 0100;
	TraceLabels 0101;
	ChartColors  '0' '0' '65535' '9' '0' 1;
	ChartBiggestSpot 1;
	ChartPercent 10;
	ChartBarWidth  '10' 1;
	ChartVerticalAxis 10101;
	ChartMinMax  '0';
	TraceAllChangesDisplay  '1' 1;
	BarsOnBranchesDisplay  '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101;
	ContinuousBranchLabels 0;
	AllStatesBranchLabels 1;
	IndexNotation  '2' 1;
	PrintTree  10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '0' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000;
	MatchChar 00 .;
	EntryInterpretation 01;
	ColorOptions 00;
	TreeTools  '0' '5' '4' '0' '10' '4' '0' 00100111111101110;
	EditorTools  '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011;
	PairAlign  '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010;
	BothTools  '1';
END;