#NEXUS [MacClade 4.08 registered to Hirai, ERATO] BEGIN DATA; DIMENSIONS NTAX=18 NCHAR=479; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|30697247|ref|NP 851224.1| SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1) [Arabidopsis thaliana] >gi|15238461|ref|NP 200764.1| SRR' M--------------------ETTVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEISL--KKIESSS--------------FYTAFL-EQLKSPEV---------------------------------------------------------------SNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIAILMKREFDWVGDN---IEVFDPVLSATESSYLESLGCSVLSVNEQARREAL-KPTLFFMPHCEANLYSNLLQANWRMDRLSK-IALFGNSFQMYEEQVSFDAEVI--------------------CATKRIIAAQRVTSEFAIETESDDYF-AAFHDSSWHFFSSGIDSELPLFVSD------------------------------------------------------------------------------ [275] 'gi|67005931|gb|AAY62602.1| sensitivity to red light reduced protein 1 [Arabidopsis thaliana]' M--------------------ETTVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEISL--KKIESSS--------------FYTTFL-EQLKSPEV---------------------------------------------------------------SNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIAILMKREFDWVGDN---IEVFDPVLSATESSYLESLGCSVLSVNEQARREAL-KPTLFFMPHCEANLYSNLLQANWRMDRLSK-IALFGNSFQMYEEQVSFDAEVI--------------------CATKRIIAAQRVTSEFAIETESDDYF-AAFHDSSWHFFSSGIDSELPLFVSD------------------------------------------------------------------------------ [275] 'gi|67005933|gb|AAY62603.1| sensitivity to red light reduced protein 1 [Arabidopsis thaliana]' M--------------------ETTVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEISL--KKIESSN--------------FYTVFL-EQLKSPEV---------------------------------------------------------------SNHIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIAILMKREFDWVGDN---IEVFDPVLSATESSYLESLGCSVLSVNEQARREAL-KPTLFFMPHCEANLYSNLLQANWRMDRLSK-IALFGNSFQMYEEQVSFDAEVI--------------------CATKRIIAAQSVTSEFAIETESDDYF-AAFHDSSWHFFSSGIDSELPLFVSDEF---------------------------------------------------------------------------- [277] 'gi|55168345|gb|AAV44210.1| unknow protein [Oryza sativa (japonica cultivar-group)]' M--------------------AAAAAGDWTVVRRRGRRRGDAAGDAASQPDAPPPLPVTPIPWSPSDPSLDPAHVSRLVDRARAAI--SRVVASR--------------LYGRLL-LPGSPLRR---------------------------------------------------------------------RLALLAPTRLSLLGVGSFENSPSSRLQLALAALLRRDLLLLPESSAHADLFDPVLSAAECAAAAALGFTVPGVNDGCRRRAD-EPTLFYMPHCEASLYDALLAANWEPPSQLRHVCVLGNSFRNYAIQAEENRSGP-------------AARAKHVLAAERFAWEERVSEKGGVDDDDDDVFNRAFNETSWHFFEVDDAADLAAAVASTGGRR------------------------------------------------------------------------- [286] lcl|Ppa_SRR1_3_1_unnamed_protein_product M---------------EDRTVSISEVEDEWKTGLPRKGKLHAKRPVYKSSEEGLLSYRPGHSPNSILSPWDAEKEHKLRQSLQKSM--ERVRRSV--------------FYKKLV-EQMQRLQILETLVANARRSERLRHDQTIVNEFLAAVQSLGPNPADYETCTFHFSDGSLILETVEYRVKENHVVDMKPAPSSPTVVELVVLGVGSILDSEVSRCQMSLALLLKNQFACIGD----LFVFDPVLSAMEYGFLSSLGCTPILRDEKGRRRAY-SPTLFYMPHCGAALYNNLLEANMDPWCLGW-ISILGNSFRKYQDSWEVVQKPM-------------------HARPDCLLGLQKYVTEHSVNAALFPCV-SAFNDMSWHLFPIKKYFY------------------------------------------------------------------------------------- [336] lcl|Smo_SRR1_1_1_unnamed_protein_product D-----------------------------------------------------------------DRELTVEEFRKAIHAILVRM--DRIRSSD--------------FYKRFL-AQVGGSVG--------------------------------------------------------------------ESLAAMGVENLVVYGLGRISRSESSRLQLALVLLLRQDRVLPEDCL--IWVFDPVLTACEWRILRQLNCRAIDSNELGLRKVE-EPTLFFMPHCESHLYDNVVKANWG--SLGK-IAILGNSFASYMERWTIYPNQK-------------------GSRPDHLLAIQPRAVELRVDDVDFM---YAFNDMSWHFF-------------------------------------------------------------------------------------------- [209] lcl|Ppa_SRR1_4_1_unnamed_protein_product M---------------SDSTTGSKEVEDEWTVVRGRKKRQHTKRSSSRNADDGHLSCCRGHGPDLDLSSGKAVAEQKLREKFASSR--ERVRSSA--------------FFKNLV-EQMERLQILETLLANGRR-------------------------AGHKACESHLSDGRSTTESLEQKEIEIFTLEVTPATKSSSLVEVVVLGVGSLLDSEVSRCQMSLALLLKDRFSCIGN----ILAYDPVLSAMECAFLTNLGCTPIVQDDKGRRRAD-SPTLFYMPHCGASLYNSVLEANVEPWCVGW-ISILGNSFQKYQDSWSVFPKPK-------------------HARPDCLLGLQEHVTEHSVNAASFPCV-SAFNDMSWHLFPVDKIL-------------------------------------------------------------------------------------- [310] lcl|Smo_SRR1_2_1_unnamed_protein_product D-----------------------------------------------------------------DQELTVEEFRKAIHAILVRM--DRIRSSD--------------FYKRFL-AQVGASVG--------------------------------------------------------------------ESLAAMGVENLVVYGLGRISRSESSRLQLALVLLLRQDRVLPEDCL--IWVFDPVLTACEWRILRQLECRAIDSNELGLRKVE-EPTLFFMPHCESHLYDNVVKANWG--SLGK-IAILGNSFASYMERLT------------------------------------------------------------------------------------------------------------------------------------------------------------ [167] 'gi|82899338|ref|XP 906766.1| PREDICTED: sensitivity to red light reduced homolog isoform 6 [Mus musculus] >gi|82898311|ref|XP 9' ----------------MAA--AALEPWSAVAPRRRKRAAGRRPRPGE------------------GPRAEPEADGEAVLRRLREAE--EDLRISD--------------FCSSAL-ETITECLR----------------------------KQLEQLQ----PLTEALGRLHLGSSLPSAS--------QEPLASSASHVKCVCYGLGTFASCPTARIQLAFMLLFLEKCQVPRSH---CWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSADALSR-VLIIGNSFRGLEERLLARILQENYPYIAKILKGLE-----------------------EVPLPQTPQYTDTFNDTSVHWFPL--------LKLEGLPGDLWASQEEPDYQDCEDLEIIRKATDRSAGVTGQFSPPGPGATVHTTPDPLPGQEYRPTGDTESHPALVAWSPK- [350] 'gi|82899340|ref|XP 906769.1| PREDICTED: sensitivity to red light reduced homolog isoform 7 [Mus musculus] >gi|82898315|ref|XP 9' ----------------MAA--AALEPWSAVAPRRRKRAAGRRPRPGE------------------GPRAEPEADGEAVLRRLREAE--EDLRISD--------------FCSSAL-ETITECLR----------------------------KQLEQLQ----PLTEALGRLHLGSSLPSAS--------QEPLASSASHVKCVCYGLGTFASCPTARIQLAFMLLFLEKCQVPRSH---CWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSADALSR-VLIIGNSFRGLEERLLARILQENYPYIAKV-------------------------------------------------------------------------------------------SDRIAG------------------------------------------PG- [248] 'gi|12849518|dbj|BAB28374.1| unnamed protein product [Mus musculus] >gi|31340431|sp|Q8K2M3|SRR1L MOUSE SRR1-like protein' ------------------------EPWSAVAPRRRKRAAGRRPRPGE------------------GPRAEPDADGEAVLRRLREAE--EDLRISD--------------FCSSAL-ETITECLR----------------------------KQLEQLQ----PLTEALGRLHLGSSLPSAS--------QEPLASSASHVKCVCYGLGTFASCPTARIQLAFMLLFLEKCQVPRSH---CWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSADALSR-VLIIGNSFRGLEERLLARILQENYPYIAKV-------------------------------------------------------------------------------------------SDRIAG------------------------------------------PGF [243] 'gi|82899336|ref|XP 899664.1| PREDICTED: sensitivity to red light reduced homolog isoform 2 [Mus musculus] >gi|82898313|ref|XP 9' ----------------MAA--AALEPWSAVAPRRRKRAAGRRPRPGE------------------GPRAEPEADGEAVLRRLREAE--EDLRISD--------------FCSSAL-ETITECLR----------------------------KQLEQLQ----PLTEALGRLHLGSSLPSAS--------QEPLASSASHVKCVCYGLGTFASCPTARIQLAFMLLFLEKCQVPRSH---CWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSADALSR-VLIIGNSFRGLEERLLARILQENYPYIAKV-------------------------------------------------------------------------------------------SDRIAG------------------------------------------PGF [249] 'gi|62664889|ref|XP 213799.3| PREDICTED: similar to SRR1-like protein [Rattus norvegicus]' MSAAWRPLWRAGDVSDMAAVVAASERWSAVA-RRRKRAAGRRPRQGE------------------EPQAEPEADSEAVLRRLLEA----DLRFGDVEFRVPPLVVQTQILESFIP-ETITECLR----------------------------KQLEQLQ----SLTEALGRLHLGSS-PGGS--------GEPLALSTSNVKCVCYGLGTFASCPAARIQLAFLLLFLEKCQIPRSH---CWVYDPLFSQTEVSVLTSLGVTVLSENEEGKHSVQSQPTVFYMPHCGTALYNNLLWSNWSADALSR-VVIIGNSFQGLEERLLARILQENYSYIAKV-------------------------------------------------------------------------------------------SDRIAG------------------------------------------LG- [276] 'gi|68364804|ref|XP 686218.1| PREDICTED: similar to SRR1-like protein isoform 1 [Danio rerio]' M---------------------------------------ACNEGWQVAGRRKGAARRGKQVLNPKLDSQQDSDCKIDQQKIIHGM--NELRGET--------------FWMEWK-DLLCERLL----------------------------------------------------------------SSTSEQSEDASLLQCVCYGLGHFESCVSARFQLAMLLLLLETLQIPVSS---CCVYDPVFSPSECDALKELGFTVLTENEEGKRAVY-QPTLFYLMHCGKALYNNLLWRNWTPRTLQK-MTIIGNSFNGIQERMLQRELERDYSFLSRMIGVCE-----------------------ETPLSCSSRFLDVFNDTALIQFPL--------ENLNKLPECTWTEPSEPLYQHCQDLEIIQREKD------------------------------------------------- [274] 'gi|55660923|ref|XP 515044.1| PREDICTED: similar to SRR1-like protein [Pan troglodytes]' M---------------AAAAAAALESWQAAAPRK----------------------------------------SGVVLRRIWEADIPQELLASP---NTQGQNMPSNCIWGPALSETINRCLT----------------------------KHLEQLKAPVGTLSDIFGNLHLDSL-PEESDVATDSIPRETLVTGTCHLKCVCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSH---CWVYDPLFSQLEIEVLNTLGVTVLSENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSK-MVIIGNSFKGLEERLLARILQKNYPYIAKILKGLE-----------------------ELEFPQTSQYMDIFNDTSVHWFPV--------QKLEQLSIDIWEFREEPDYQDCEDLEIIRNKREAATRD-------------------------------------------- [313] 'gi|6572162|emb|CAB62929.1| OTTHUMP00000028718 [Homo sapiens] >gi|31340433|sp|Q9UH36|SRR1 HUMAN SRR1-like protein' M---------------AAAAAAALESWQAAAPRKR-RSAARRPRRREAAPRGREAAPRGREAAPRGPEAEFESDSGVVLRRIWEAE--KDLFISD--------------FWSSAL-ETINRCLT----------------------------KHLEQLKAPVGTLSDIFGNLHLDSL-PEESDVATDSIPREILVTGTCHLKCVCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSH---CWVYDPLFSQLEIEVLNTLGVTVLSENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSK-MVIIGNSFKGLEERLLARILQKNYPYIAKILKGLE-----------------------ELEFPQTSQYMDIFNDTSVHWFPV--------QKLEQLSIDIWEFREEPDYQDCEDLEIIRNKREDPSATD------------------------------------------- [339] 'gi|61966839|ref|NP 001013716.1| hypothetical protein LOC402055 [Homo sapiens] >gi|45219785|gb|AAH66962.1| Similar to SRR1-like' M---------------AAAAAAALESWQAAAPRKR-RSAARRPRR-------REAAPRGREAAPRGPEAELESDSGVVLRRIWEAE--KDLFISD--------------FWSSAL-ETINRCLT----------------------------KHLEQLKTPVGTLSDIFGNLHLDSL-PEESDVATDSIPREILVTGTCHLKCVCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSH---CWVYDPLFSQLEIEVLNTLGVTVLSENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSK-MVIIGNSFKGLEERLLARILQKNYPYIAKILKGLE-----------------------ELEFPQTSQYMDIFNDTSVHWFPV--------QKLEQLSIDIWEFREEPDYQDCEDLEIIRNKREDPSATD------------------------------------------- [332] 'gi|76634320|ref|XP 872325.1| PREDICTED: similar to SRR1-like protein [Bos taurus]' M---------AAAAAAAAAAAATRETWRAASPRRR-RSAARRPKRRE------------AAAAAGTPGAEPEVDGGVVLRRIQEAR--EDLVISD--------------FWSSAL-ETITGCLR----------------------------KHLEQLRAPEGSLSEALGHLHLDAP-PVEADATPGSVPEETLVPGTCCFKCVCYGVGKFASCIIARSQLAFLLLLLERCQIPRSH---CCVYDPLFSRLEIAVLNALGVVVLGDNEEGKRSVCGEPTIFYMPHCGTALYNNLLWRNWSVDALSK-VVIIGNSFGGLEERLLTRILHKHYPYVAKILTGLE-----------------------ELAFPQTPRYMDVFNDTSLHWFPV--------QKLTQLPTDTWAFREEPDYQDCEDLEIIRKKTEPPCADLSSL---------------------------------------- [336] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-74 86-89 96-109 116 125-193 237-240 247 276 286 300-302 307 324-479; END; BEGIN MacClade; Version 4.0 87; LastModified -1058646224; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '12' '716' '1' all; EditorPosition '44' '28' '969' '1569'; TreeWindowPosition '46' '6' '985' '1630'; ListWindow Characters closed 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