#NEXUS 
[MacClade 4.08 registered to Hirai, ERATO]


BEGIN DATA;
	DIMENSIONS  NTAX=95 NCHAR=1126;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|71833953|dbj|BAE16983.1| cyclic dof factor 1 [Arabidopsis thaliana] >gi|10178074|dbj|BAB11493.1| H-protein promoter binding'     ----------------------------------------------------------------------------------------------------------------------------------------------------------------MLETKDPAIKLFGM-------------------KIPFPTVLEVADEEEEKNQNKT----LTDQSEKDKTL-----KK------PTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNKNNS---PTSHYHH-------VTISETNGP-----------------------------------------------------------------VLSF----------------------------S-LGDDQKVS---------------------SNRFGNQKLVARIE--NNDERSNNNTSNGLN----------------------------------------------------------------------CFPGVSWPYTWNPAFYPVYP---------------------------------YWSMPVLSSPVS------------------SSPTSTLGKHSRDEDETVKQKQRNGSV-------------------------LVPKTLRI----------DDPN------EAAKSSIWTTLGIKNEV----------------------MFNGFGSKKEVKLSNKEETETSLV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LCANPAALSRSINFHEQM-------------------------------------------------------------------------------------------------------------------------------------------------------   [298]
'gi|15232818|ref|NP 190334.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|22136158|gb|AAM91157.1| H-protein pr'    ----------------------------------------------------------------------------------------------------MMMETRDPAIKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNCNDNSFNNSKPETLD-------------------KEEATSTDQIESSDTPEDNQQ--------TTPDGKTL-----KK------PTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS---SHYRHIT-------ISEALEAAR-------------------------------------------------------LDPGLQANTRVLSFGLEAQQQH-----------VAAPMTPVMK-LQEDQKVSNGARNR---------------FHGLADQRLVARVE--NGDDCSSGSSVTTSNNHSVDESRAQSGSVVEAQMNNNNNNNMNGYA---------------------------------------CIPGVPWPYTWNPAMPPPGFYPPPGYPMPFYP---------------------YWTIPML--PPHQSSSPISQKCS-------NTNSPTLGKHPRDEGSSKKDNETERKQKAGCV--------------------LVPKTLRI----------DDPN------EAAKSSIWTTLGIKNEA------------------MCKAGGMFKGFDHKTKMYNNDKAENSPV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSANPAALSRSHNFHEQI-------------------------------------------------------------------------------------------------------------------------------------------------------   [448]
'gi|21536859|gb|AAM61191.1| H-protein promoter binding factor-2a [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------MMMETRDPAIKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNCNDNSFNNSKPETLD-------------------KEEATSTDQIESSETPEDNQQ--------TTPDGKTL-----KK------PTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS---SHYRHIT-------ISEALEAAR-------------------------------------------------------LDPGLQANTRVLSFGLEAHQQH-----------V-APMAPVMK-LQGDQKVSNGARNG---------------FHGLADQRLVARVE--NGDDCSSGSSVTTSNNHSVDESRAQSGRIVEPQM--NNNNNMNGYA---------------------------------------CIPGVPWPYTWNPAMPPPGFYPPPGYPMPFYP---------------------YWTIPMISPSPHQSSSPISQKDS-------NTNSPTLGKRSRDEESSKRDSETERKQRTGCI--------------------LVPKTLRI----------DDPN------EAAKSSIWTTLGIKNEA------------------MCKAGGMFKGFDHKTKMYNNDKAENSPV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSANPAALSRSHNFHEQI-------------------------------------------------------------------------------------------------------------------------------------------------------   [447]
'gi|1669341|dbj|BAA08094.1| AOBP (ascorbate oxidase promoter-binding protein) [Cucurbita maxima]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNP-E-------------------VLSTDENDKLATRKTEKEQND--------APNSKEKL-----KK------PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTIRNVPVGAGRRKNKNSA---SHYRHIT-------ISEALRAAQ-----IDVPIEV-------------------------------------------NHLASKGNGRVLNFSV-----------------SPPVCESMVN-VSHPAERKVLNGTR---------------NEFEGAKGPCEGGE--TGDDCSSASSVTMSSSMKNGARRFPQEPHMQNINGFPSQIPCLPGVPWPCSW---------------------------------------------TAPIPPPALCPPGVPLSFYPATYWSCSA-----------SGSWNIPWVTPQPCPPIP--------------GPNSPTLGKHSRDGDELQADNSEMKDPPKQKNG-----SV------------LVPKTLRI----------DDPN------EAAKSSIWETLGIKNDS------------IKAVDLSNVFQSKGDLKSNVSEVLS-------PV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAALSRSLTFHERS-------------------------------------------------------------------------------------------------------------------------------------------------------   [380]
'gi|15983797|gb|AAL10495.1| AT5g39660/MIJ24 130 [Arabidopsis thaliana]'                                    ----------------------------------------------------------MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLG------------------REEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVT-------------------TTTSGITEKTETTKAAKTNEES----GGTACSQEGKL-----KK------PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPA---SHYNRHV-------SITSAEAMQ-----KVARTDL----------------------------------------------QHPNGANLLTFGSDSV--------------LCESMASGLN-LVEKSLLKTQTVLQEPNEGLKITVPLNQTNEEARTVSPLPKVP---------------------------------------------------------------------------------------------------CFPGPPPTWPYAWNGVSWTILPFYPPPA---YWSCPGVSPGAWNSFTWMPQPNSPSGS-------------NPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCL------------WVPKTLRI----------DDPE------EAAKSSIWETLGIKKDE-----------------NADTFGAFRSSTKEKSSLSEGRLPGRRPE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAALSRSANFHESS-------------------------------------------------------------------------------------------------------------------------------------------------------   [457]
'gi|18421891|ref|NP 568567.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|30693448|ref|NP 851106.1| DNA bindin'    ----------------------------------------------------------MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLG------------------REEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVT-------------------TTTSGITEKTETTKAAKTNEES----GGTACSQEGKL-----KK------PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPA---SHYNRHV-------SITSAEAMQ-----KVARTDL----------------------------------------------QHPNGANLLTFGSDSV--------------LCESMASGLN-LVEKSLLKTQTVLQEPNEGLKITVPLNQTNEEAGTVSPLPKVP---------------------------------------------------------------------------------------------------CFPGPPPTWPYAWNGVSWTILPFYPPPA---YWSCPGVSPGAWNSFTWMPQPNSPSGS-------------NPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCL------------WVPKTLRI----------DDPE------EAAKSSIWETLGIKKDE-----------------NADTFGAFRSSTKEKSSLSEGRLPGRRPE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAALSRSANFHESS-------------------------------------------------------------------------------------------------------------------------------------------------------   [457]
'gi|9758342|dbj|BAB08898.1| unnamed protein product [Arabidopsis thaliana]'                                    ----------------------------------------------------------MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLG------------------REEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVT-------------------TTTSGITEKTETTKAAKTNEES----GGTACSQEGKL-----KK------PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPA---SHYNRHV-------SITSAEAMQ-----KVARTDL----------------------------------------------QHPNGANLLTFGSDSV--------------LCESMASGLN-LVEKSLLKTQTVLQEPNEGLKITVPLNQTNEEAGTVSPLPKVP---------------------------------------------------------------------------------------------------CFPGPPPTWPYAWNGVSWTILPFYPPPA---YWSCPGVSPGAWNSFTWMPQPNSPSGS-------------NPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCL------------WVPKTLRI----------DDPE------EAAKSSIWETLGIKKDE-----------------NADTFGAFRSSTKEKSSLSEGRLPGRRPE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAALSRKQTNSNKFKGTFIVIHMMYDSQNLESDLTYWTSVVVAATSLFSASAEERTTVFNFLDDRDVKCLPW---------------------------------------------------------------------------------------------   [515]
'gi|15222364|ref|NP 177116.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|12597792|gb|AAG60104.1| H-protein pr'    --------------------------------------------------------------------------------------MSKSRDT-EIKLFGRTITSLLDVNCYDPSSLSPVHDVSSDPSKEDSSSSSSSCSPTIGPIRVPVKKSEQESNKFKDPYILSDLNEP-P-------------------KAVSEISSPRSSKNNCDQQSEI----TTTTTTSTTSG-----EKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGWP---SSNHYLQ-------VTSEDCDNN-----NSGTILS-------------------FGSSESSV-TETGKHQSGDTAKISADSVSQENKSYQGFLPPQVMLPNNSSPWPYQWSPTGPNASFYP-VPFYWGCTVPIYPT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SETSSCLGKRSRDQTEGRINDTNTTITTTRAR--------------------------------------LVSESLRMNIEASKSAVWSKLPTKPEK-KTQGFSLF-NGFDTKGNSNRSSLVSETS---------------HS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAAMSRAMNFRESMQQ-----------------------------------------------------------------------------------------------------------------------------------------------------   [399]
'gi|3386548|gb|AAC28391.1| H-protein promoter binding factor-2b [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------MSKSRDTVRHKLFGRTITSLLDVNCYDPSSLSPVHDVSSDPSKEDSSSSSSSCSPTIGPIRVPVKKSEQESNKFKDPYILSDLNEP-P-------------------KAVSEISSPRSSKNNCDQQSEI----TTTTTTSTTSG-----EKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGWP---SSNHYLQ-------VTSEDCDNN-----NSGTILS-------------------FGSSESSV-TETGKHQSGDTAKISADSVSQENKSYQGFLPPQVMLPNNSSPWPYQWSPTGPNASFYP-VPFYWGCTVPIYPT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SETSSCLGKRSRDQTEGRINDTNTTITTTRAR--------------------------------------LVSESLRMNIEASKSAVWSKLPTKPEK-KTQGFSLF-NGFDTKGNSNRSSLVSETS---------------HS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAAMSRAMNFRESMQQ-----------------------------------------------------------------------------------------------------------------------------------------------------   [400]
'gi|9295735|gb|AAF87041.1| T24P13.17 [Arabidopsis thaliana] >gi|55583992|sp|Q9LQX4|DOF13 ARATH Hypothetical Dof zinc finger prot'    --------------------------------------------------------------------------------------------------MSQVRDTPVKLFGWTITPVSHDPYSSSSHVLPDSSSSSSSSSLSLRPHMM------------NNQSVTDNTSLK-L-------------------SSNLNNESKETSENSDDQHSEI----TTITSEE---------EKTTELKKPDKILPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNKGWV---SSDQYLH-------ITSEDTDNY-----NSSSTKI-----------------LSFESSDSLV-TERPKHQS-NEVKINAEPVSQEPNNFQGLLPPQASPVSPPWPY-----QYPPNPSFYH-MPVYWGCAIPVWST-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDTSTCLGKRTRDETSHETVKESKNAFERTSLLLESQSIK------------------------------------NETSMATNNHVWYPVPMTRE--KTQEFSFFSNGAETKSSNNRFVPETY-----------------LN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAAMARSMNFRESI-------------------------------------------------------------------------------------------------------------------------------------------------------   [366]
'gi|15223349|ref|NP 174001.1| DNA binding / transcription factor [Arabidopsis thaliana]'                                    --------------------------------------------------------------------MWLSHLFMSLSKLTCNFSIFSVFMACGSIGMSQVRDTPVKLFGWTITPVSHDPYSSSSHVLPDSSSSSSSSSLSLRPHMM------------NNQSVTDNTSLK-L-------------------SSNLNNESKETSENSDDQHSEI----TTITSEE---------EKTTELKKPDKILPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNKGWV---SSDQYLH-------ITSEDTDNY-----NSSSTKI-----------------LSFESSDSLV-TERPKHQS-NEVKINAEPVSQEPNNFQGLLPPQASPVSPPWPY-----QYPPNPSFYH-MPVYWGCAIPVWST-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDTSTCLGKRTRDETSHETVKESKNAFERTSLLLESQSIK------------------------------------NETSMATNNHVWYPVPMTRE--KTQEFSFFSNGAETKSSNNRFVPETY-----------------LN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAAMARSMNFRESI-------------------------------------------------------------------------------------------------------------------------------------------------------   [396]
'gi|78708599|gb|ABB47574.1| Dof domain, zinc finger, putative [Oryza sativa (japonica cultivar-group)]'                              -------------------------------------------------MGECRGGGGGGDGLIKLFGKTIP---------------------------------------------------------------------------VQPDAKDVQQHSGSSSSSTESDVQE-T-------------------AAVAVADPSPRSEVVDGESPPQ----PGGEAASHQQQ-----QKEMKLKKPDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNAT---AAAHFLH-------RVRACAAAA-----AMPAAPH-----------------------------------------------DATNATVLSFGGGGG--------------GHDAPPVTLD-LADKMT-------------------------RLGKEGLVAHAR----NADAAAACSEVSSNRDDEQIGNTVAKPANGLQQHPPPPHHHHHSAMNGGGIW------------------------------------------------------PYYTSGIAIPIYPAAPA---YWGCMIPPPGAWSLPWPATVQSQAISSSSPPTSATP----SVSSFTLGKHPREGGDHEARDHHGN------------GKV------------WVPKTIRI----------DNAD------EVARSSIRSLFAFRGGD-KADDNNDDDGTGVHKLATTVFEPKRDSKTAKHPAITSL-----PL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LHTNPVALTRSATFQEGS-------------------------------------------------------------------------------------------------------------------------------------------------------   [437]
'gi|37534202|ref|NP 921403.1| putative H-protein promoter binding factor-2a [Oryza sativa (japonica cultivar-group)] >gi|1545155'    MGGGGKCKRGKRGKIAAKRRRGQCCSSSSSSGGARRRARERESEESLGEMGECRGGGGGGDGLIKLFGKTIP---------------------------------------------------------------------------VQPDAKDVQQHSGSSSSSTESDVQE-T-------------------AAVAVADPSPRSEVVDGESPPQ----PGGEAASHQQQ-----QKEMKLKKPDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNAT---AAAHFLH-------RVRACAAAA-----AMPAAPH-----------------------------------------------DATNATVLSFGGGGG--------------GHDAPPVTLD-LADKMT-------------------------RLGKEGLVAHAR----NADAAAACSEVSSNRDDEQIGNTVAKPANGLQQHPPPPHHHHHSAMNGGGIW------------------------------------------------------PYYTSGIAIPIYPAAPA---YWGCMIPPPGAWSLPWPATVQSQAISSSSPPTSATP----SVSSFTLGKHPREGGDHEARDHHGN------------GKV------------WVPKTIRI----------DNAD------EVARSSIRSLFAFRGGD-KADDNNDDDGTGVHKLATTVFEPKRDSKTAKHPAITSL-----PL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LHTNPVALTRSATFQEGS-------------------------------------------------------------------------------------------------------------------------------------------------------   [486]
lcl|Smo_CDF1_4_1_unnamed_protein_product                                    ----------?SSCKSYGLSATPGAWMSLLRMILVARMGVSRSSLCFLASHSLWDSAARIRDVLMTRRWTMECEQRLIINNSTTDPAIKLFGKTIPLLSDKPAKNHPQFHQQQQLQQQQQQEVVDESRDEEAITEDDHHPPPEQEEVIEVVDHQEEDYCDIDEAPVDQSPAA-A-------------------AAAATTTTSTDLQQALDRKDGG----SGGDNGGDQQQ-----QKPKK---PDKPVACPRCDSMDTKFCYYNNYNINQPRHFCKNCQRYWTSGGTLRNVPVGAGRRKNKHHH---HHHHHHH-------HTAGAGGAG-----ATPAAAVPP------GSQWHQHHAAAA--------------------------------------------------------AAAAHAAALN-YGQQHALKIIPPLQ---------------ILQQQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HDEGSIVTSAGGVPPSSVTTPKSAS?GIAAAPAAAAAANE------------AVPEPEQQ----------PR?---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [379]
lcl|Smo_CDF1_27_1_unnamed_protein_product                                    ---------------------------------------------------?FWDSAARIRDVLMTRRWTMECEQPLISNNSTTDPAIKLFGKTIPLLSDKPAKNHPQFH------QQQQQEVVDESRDEEAITEDDHSPPAEQEEVIEVVDHQEEDYCDIDEGPVDQSPAA---------------------AAATATTTSTDLQQALDRKDGG----SGGDNGGDQQQ-----QKPKK---PDKPVACPRCDSMDTKFCYYNNYNINQPRHFCKNCQRYWTSGGTLRNVPVGAGRRKNKHHH---HHHHHHH-------HTAGGAGAA-----ATPAAAVPP------GSQWHQHH------------------------------------------------------------AAAAHAAALN-YGQQHALKIIPPLQ---------------ILQQQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HDEGSIVTSAGGVPPSSVTTPKSAG-GKNAGEMNCYAFQF------------GSPRHQQQ----------QQQQTKRCPSQSSNSEVTVCGGSFSSPSPSSNNSNKKKSITTTTTTTTTTTGTASGTTTDNAANNSGVCGMDKCPEEANAAAAAATAAAAAAAAAWVLPMGFLGGKNGQHAMPYHQAGGACGIPCWPSPVPPVLAAAAAGQWSMQWAAMAAVAAAANASANNAAAVAAAAAAAMGGTKRPVEKSDGGCLWVPKTLRIDDPGDAARSSIWAALGVDRKHTVFQHSSDLDHQHQQRMKMLQLQMQGDQITNPAAMARSASFHESN-------------------------------------------------------------------------------------------------------------------------------------------------------   [586]
'gi|50940107|ref|XP 479581.1| putative ascorbate oxidase promoter-binding protein AOBP [Oryza sativa (japonica cultivar-group)]'     ---------------------------------------------------------------------------------------------------------MDDLAAASPPHPPPPPPESHVPPPPQTPEKDSCEDTGDMRISEEKPCTDQELDADQMNSSSFNSSSE-C-------------------ENQTPSNDEMTGSESKSEAAQT----EGGGSSEEKVL-----KK------PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKSST---ANYRSIL-------ITGSNLAAP-----AGDAPLY------------------------------------------QLSIKGDQTATAVKFAPDSP--------------LCNSMASVLK-IGEQSK----------------------------NAKPTSTAQPRNGETQTCPASGTTSDSPRNEPVNGAVSGHQNGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPVCTAPAEPANSSDNGSTASVQWSMPPVMPVPGYFPVIPSSVWPFISPWP-----------------NGAWSSPWIQPNCSVSASSPTSTSTCS-----DNGSPVLGKHSRDSKPQGDDKAEKN--------------L------------WIPKTLRI----------DDPD------EAAKSSIWTTLGIEPGD-----------------------RSMFRSFQSKPESREQISGAARV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAALSRSQSFQETT-------------------------------------------------------------------------------------------------------------------------------------------------------   [476]
'gi|21538791|emb|CAC85949.1| dof zinc finger protein [Hordeum vulgare subsp. vulgare]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-----KK------PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSIS---AASHFLQ-------RIRAALPGD------------------------------------------------------PLCTPVNTNGTVLSFGSDAS---------------------TLDVVSEQMKHM---------------------------KELSSVTRTENTDAPSVGSCAEGWAKGEESSQMNSRERVAADRSP----------------------------------------------------NFAQHPCMNGAAMWPFSCAPSPAYFTPNVAIPFYPAAA---AAYWGCMVPGAWNTPWQPQPQPQSQCQSSSPPSAASPVSTMSSCFQSRKHPRDGDEERDTKGNGKV--------------------------WVPKTIEST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [270]
'gi|56783837|dbj|BAD81249.1| putative ascorbate oxidase promoter-binding protein AOBP [Oryza sativa (japonica cultivar-group)]'      -------------------------------------------------------------------------------------------------MKVDVPQEEEDNEMKVDAPQEKKDNEVTADVPEEKGNDEMRVDASESIESIEPVSRSTLDNKKEDQGQMNNVEEK-A-------------------ASDSKDENEKTAND---------------ESGQDKVL-----KK------PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSSS---LHYRHLL-------MAPDCMMGS-----RVEISKS-------------------------MN-PEAFASAHSTPIQPIGR-----NETVLKFGPEVP--------------LCESMASVLN-IQEQNG-----------------------------TNAAAVPTGENQEDNSCISSITSHNVLPENAAQVDKNSTPVYCNGVGPVPQYYLGAPYMYPWNI-------GWNNVPMMVPGTSMPESASQSESCSTSSAPWMNMNSPMMPVASRLSAPPFPYPLVPPALWGCLS---SWP-----ATAWNIPWIRTNGGCMSPSSSSNSSC------SGNGSPLGKHSRDSSLPLKEDKEEK-------------SL------------WVPKTLRI----------DDPD------EAAKSSILASSS---------------------------RSSPKVRAKAKQHQRLVLLVLLRQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TQLHCRGRSRSRRLLDSLPVEFPIVFVSTVCVL----------------------------------------------------------------------------------------------------------------------------------------   [496]
'gi|34903056|ref|NP 912875.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------MNNVEEK-A-------------------ASDSKDENEKTAND---------------ESGQDKVL-----KK------PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSSS---LHYRHLL-------MAPDCMMGS-----RVEISKS-------------------------MN-PEAFASAHSTPIQPIGR-----NETVLKFGPEVP--------------LCESMASVLN-IQEQNG-----------------------------TNAAAVPTGENQEDNSCISSITSHNVLPENAAQVDKNSTPVYCNGVGPVPQYYLGAPYMYPWNI-------GWNNVPMMVPGTSMPESASQSESCSTSSAPWMNMNSPMMPVASRLSAPPFPYPLVPPALWGCLS---SWP-----ATAWNIPWIRTNGGCMSPSSSSNSSC------SGNGSPLGKHSRDSSLPLKEDKEEK-------------SL------------WVPKTLRI----------DDPD------EAAKSSIWATLGIKPGD---------------PGIFKPFQSKGESKGQAASETRPA-----RA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKANPAALSRSQSFQETS-------------------------------------------------------------------------------------------------------------------------------------------------------   [420]
'gi|50919879|ref|XP 470300.1| putative zinc finger DNA-binding protein [Oryza sativa (japonica cultivar-group)] >gi|19071625|gb|'    ------------------------------------------------------------------------------------------------------MGECKVGGGGGGGDCLIKLFGKTIPVPEPGACAAGDVDKDLQHSGSSTTEPKTQENTVQDSTSPPPQPEV---------------------VDTEDSSADKNSSENQQQQGD--------TANQKEKL-----KK------PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSVS---AASHFLQ-------RVRAALPGD-----------------------------------------------------PPLYAPVKTNGTVLSFGSDLS---------------------TLD-LTEQMKHL--------------------------KDKFIPTTGIKNTDEMPVGLCAEGLSKTEESNQTNLKEKVSADRSP----------------------------------------------------NVAQHPCMNGGAMWPFGVAPPPAYYTSSIAIPFYPAAAAAVAAYWGCMVPGAWNAPW----PPQSQSQSVSSSSAASPVSTMTNCFRLGKHPRDGDEELDSKGNGKV--------------------------WVPKTVRIDDVD----------------EVARSSIWSLIGIKGDK------------VGADHGRGCKLAKVFESKDEAKASTHTAISSLPF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQGNPAALTRSVTFQEGS-------------------------------------------------------------------------------------------------------------------------------------------------------   [440]
lcl|Smo_CDF1_11_1_unnamed_protein_product                                    --------------------------------------------------------------------MRAARDESSIEEQILSSEDQVQTNHSDESSQLDDLGSSSGSCEEDKPDGGGNRRGDQFLLDRPAPATKKKRISKEGETKDREREEEANRGENGNGGERDESEED-G-------------------ERKIQNLSQVPRSGEDHHHHHH----HQQNPFQHEEQQQHHNCSKPVLKKPDKLVPCPRCSSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKSKHSS---SSASSHH-------HSHPHPHSS-----DNSSWNTTS------TNNHNHS-------------------------------------------------------------HCHNQSRSMN-HSQEQHQHLQDRHH---------------HQQQQQEKQQKQQQQLKRDL--------------------------------------------------------------------------------------------------------------------------------------------------------------------ASELKQRAGSRMRLPPVIPQDQMCHFPTPAETSPSGSSIL------------TSLNSPGG----------PGSIGSIFNMHLAAAAAAAAAAAAAAA-TAADNPNSPDAAGSPAGNSSSVSSRMNAWVADSSEAALT?AASDV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------KETTETVQVQVQVQV----------------------------------------------------------------------------------------------------------------------------------------------------------   [423]
'gi|3929325|gb|AAC79873.1| putative DNA-binding protein [Dendrobium grex Madame Thong-In]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTLTKCCMQRGSH----FRSRSGSQE---------------ARSGSSMSRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKNKHTG---SVYRHTV-------ITPDSLASL-----QVDGPDL---------------------------------------VDHKPLSPFKVNGTILKFGPDAP--------------LCESMASILN-LGEQNL----------------------------SSQLDFTAGAENREETSCSSACKPVKKKDITQHN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [179]
lcl|Ppa_CDF1_17_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------DGGDSSLFRNENEGGVVEKLRTARSSSRDEFLQPPKSTEL---------------------VPGNRSTMIFSLGASDSEGAHSDELKDQGEGDHSQYL-----GDDKHLQKPDKVVSCPRCDSLETKFCYYNNYNINQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKHGV---VQRDCTE-------ASVNCSIQS-----DSSDSAS--------------QLLPCALGSPTSQKAGSSLKHSQPKRLVGQGSPMRSPRSTMSFSQDSGITLPPPFSLHRNGPIPYQSFSSSQGFLTSGSEVYTVGSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSSSVTIGQRIARFPSVNGMDKDCSRSSLSGQLQATHSLR----------------------------------------------------------SMTTVYNPSLQLESSSGMHRSVLPPGSSGWPGN?----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [330]
lcl|Smo_CDF1_1_1_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------MAVKESGQSAAKRELSHAVKLFGMKISLSVTPADEDQAASPAELAKSEVISNTAEEIASFSASTSGSD-D-------------------DKALKREEEEEDHGGRGGGVAE----VPRRPEEQEDK-----RSGRPLKRPEKPVSCPRCHSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKNGR---LENGGGG-------AAAAAAAAG-----SDLPPQQNP------GQSSERKLATKLPQQDSSC-KVSRASDAG---------------------------------------RGGSFGFIRG-FATSRSTEEDPSRQ---------------SQQQQSSTSEGSNDSRDDSTCGSSVSNPAQECREGGGGTTAWPYAFFNGTGPWNLPGWA-----------------------------------------------------------------------------------------------------------------------------GWSNSPWGSMAATAATAAAKVLAQNVHTALGKHMRD----------------------------------EKSVAGAGPAKRPEGSLWAPKTLRIDAQGDASRGSSFLADIATGSNKVDTISTGGMFKAFQQETSGTKPGPDD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDGHPRTASDTNKSSEGT-------------------------------------------------------------------------------------------------------------------------------------------------------   [434]
'gi|57900373|dbj|BAD87583.1| putative Dof zinc finger protein [Oryza sativa (japonica cultivar-group)]'                              --------------------------------------------------MLSHVEMAPAAGGFKLFGKVIMQCGVSEGTQDKAQGFV-----------------------------------------------------VAREKVEPEEEEEEEQRVPAAATSGQRASIKRE-------------------AADRDEEQRQGGGDAAGQPTQ--------RRLQDSAE-----ARAA----AAAPLPCPRCRSRDTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKNRPLG---PLAVAHH-------NHHHRAAAG----------------------------------------------------------------FVLGFP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NPSSPTSPSPVYTDRWPVTPDRPF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [211]
'gi|34909694|ref|NP 916194.1| putativeDof zinc finger protein [Oryza sativa (japonica cultivar-group)]'                              --------------------------------------------------------MAPAAGGFKLFGKVIMQCGVSEGTQDKAQGFV-----------------------------------------------------VAREKVEPEEEEEEEQRVPAAATSGQRASIKRE-------------------AADRDEEQRQGGGDAAGQPTQ--------RRLQDSAE-----ARAA----AAAPLPCPRCRSRDTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKNRPLG---PLAVAHH-------NHHHRAAAG----------------------------------------------------------------FVLGFP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NPSSPTSPSPVYTDRWPVTPDRPF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [205]
lcl|Ppa_CDF1_15_2_unnamed_protein_product                                    ------------------------------------------------------------------------GLSGAADKLQGDVAGVHEIVVTPFPLSSEKQESETEPLDSIHLKSNSGDVVADGSSLELANELQNEVPGVSGLDQSAGTEALGPPQHQTAKLEEGTVGRR-P-------------------LAVADNEDTVGSVRPPPVDGDL----VGPSPKQAKVQ-----HQKPALKKPDKLAPCPRCDSLDTKFCYYNNYNANQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKTKHGN---SHVRHGG-------LLDIPAARQ-----DSDMALSRP------CLSRGASVPDQVSPLPASS-SS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPSTITSLPSSQDRSSSDAVTQTCSMRPAEAVRKHHIPGI------------ALSFCIFM----------SSLLYSHMRLLVVLIIVAGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [317]
lcl|Ppa_CDF1_14_1_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------MQTGSEEVDGASMQLEADEMGSSLGSTCNESSAGALNTSNAEMAIKDVNGE-A-------------------QV----FATFTRELPQSVMQTI----HGMVSQQKQRALTVEEKKEQCSKKPDKLIPCPRCDSLETKFCYYNNYNVNQPRHFCKSCQRYWTAGGTLRNVLVGAGRRKNKYGA---SQMKQED-------AEGANSGIT-----TVRMDHH---------------------------------------------------------------------EGAQPMLPCTINPYVIK-VPPMQLPQLATQCS---------------PRQVSDVQSTVTT----SCKAVSSASAFQPAVPEMS----------------------------------------------------------------------------------------------------------------------------------------------------TDSVSKLRQRSGTESTFEGKETSSSISSVSATETTSKYVL------------SSRVPPQQ----------QADQ------QAVWTKNSVPLGYFNGA-WPYGYNIGIGGVGPIPDNPAMCGPHPAAALASSNLPNGMSPPPVN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------VWT?---------------------------------------------------------------------------------------------------------------------------------------------------------------------   [359]
'gi|15218846|ref|NP 174211.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|55583799|sp|P68350|DOF15 ARATH Dof z'    -------------------------------------------------------MATQDSQGIKLFGKTITFNANITQTIK---------------------------------------------------------------------------------------------------------------KEEQQQQQQPELQATTAVRS---------PSSDLTAE-----KR------PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPG---RVGGFAE-------LLGAATGAV---------------------------------------------DQVELDALLVEEWR-AATASHGGFRHDFPVKRLRCYTDGQSC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [175]
lcl|Ppa_CDF1_1_1_unnamed_protein_product                                    ------------------------------------------------------------MSKLRKWMMKEERENSAGSADTSAIKLFGKTIAVNSGVSDSQETSTKAGTSADAAVVHPCASQAGSEEVDGASTQSEADEMGSSICNEIRNVE-----------APKDAPQE-S-------------------QVSSEKLASETMTVSTSI-QAP----AAAVAQEKQRPLTVEEKKEQCVRKPDKLIPCPRCDSLDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTLRNVLVGAGRRKNKYGS---SQMKQEA-------SEGVNSGIT-----TVRLDHH---------------------------------------------------------------------EGAQPMLPCAINPYGLK-VPPMNIPQLAASCA---------------SRQASEAQSTVTSCGKESNKVFTSASAFKPAGPDVS----------------------------------------------------------------------------------------------------------------------------------------------------NDSVSKLRQRTRTD-TPEGKDVSSPGSSPFVSESPTSHVL------------TSRVQPQQ----------QEVQ-----QQAMWTKSNPQLGFFN?----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [366]
'gi|56783710|dbj|BAD81122.1| ascorbate oxidase promoter-binding protein AOBP -like [Oryza sativa (japonica cultivar-group)]'         ---------------------------------------------------------------------------------------------------MAALRQGDDPAIKLFGRTIPLLLDPPAAAAAAADEVMPNLGNGVKTNNDLPLVSDKLLIVKGIPFCPNNSKKN-D-------------------LQGISRPDGRIEIDSMTEDVKT----EPDGSVPEKIL-----KK------PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVS---KYCQAMM-------TCNNTVAPG-----DVSDVVH---------------------------------HQVITHGSSLLPATLKENETPTEFISEVP--------------PCKSSASILD-IGEPND-----------------------------TDLVPLASGDNKEEKSCASSVVVSSCSENLMPDNAIMKEPNNRSGCCNGVALPFPTGPALVLPWSLGWNSVALMPATQCSMQPVLGLKDGIPCPPSWPPQLMVPAPGICTPVVPIPLVPPLWSCFPGWP-----------------NGMWNAQCPGGNTTVLPSTAPNKISCS-----GSSSLVLGKHSREESLQEEEKTRNY--------------L------------WVPKTLRI----------DDPA------EAAKSSIWATLGIKPDD-----------------------KGIFKSFQPNVAKNGTAPESPQA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAAFSRSQSFQETT-------------------------------------------------------------------------------------------------------------------------------------------------------   [490]
'gi|34903284|ref|NP 912989.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]'                                    ---------------------------------------------------------------------------------------------------------------------------------------MPNLGNGVKTNNDLPLVSDKLLIVKGIPFCPNNSKKN-D-------------------LQGISRPDGRIEIDSMTEDVKT----EPDGSVPEKIL-----KK------PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVS---KYCQAMM-------TCNNTVAPG-----DVSDVVH---------------------------------HQVITHGSSLLPATLKENETPTEFISEVP--------------PCKSSASILD-IGEPND-----------------------------TDLVPLASGDNKEEKSCASSVVVSSCSENLMPDNAIMKEPNNRSGCCNGVALPFPTGPALVLPWSLGWNSVALMPATQCSMQPVLGLKDGIPCPPSWPPQLMVPAPGICTPVVPIPLVPPLWSCFPGWP-----------------NGMWNAQCPGGNTTVLPSTAPNKISCS-----GSSSLVLGKHSREESLQEEEKTRNY--------------L------------WVPKTLRI----------DDPA------EAAKSSIWATLGIKPDD-----------------------KGIFKSFQPNVAKNGTAPESPQA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQANPAAFSRSQSFQETT-------------------------------------------------------------------------------------------------------------------------------------------------------   [454]
'gi|15226224|ref|NP 180961.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|34365615|gb|AAQ65119.1| At2g34140 [A'    -------------------------------------------------------MATQDSQGIKLFGKTIAFNTRT--------------------------------------------------------------------------------------------------------------------IKNEEETHPPEQEATIAVRSS--------SSSDLTAE-----KR------PDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPPG---RVVVGML-------GDGNGVRQV-----------------------------------------------ELINGLLVEEWQHAAAAAHGSFRHDFPMKRLRCYSDGQSC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [170]
'gi|47026917|gb|AAT08679.1| H-protein promoter binding factor [Hyacinthus orientalis]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRAA----AGRCLPCPRCKSKETKFCYFNNYNVNQPRHFCRNCHRYWTAGGTLRRVPVGAGRRKNRTPP---PCGADGV-------GEADQAVWP-----AGS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [84]
'gi|21538787|emb|CAC85947.1| dof zinc finger protein [Hordeum vulgare subsp. vulgare]'                                    ---------------------------------------------------------MGGAAGIKLFGKVITRQPTRQGTDGGGGGVP---------------------------------------------------------------------------------------------------------SKAQQAPSMSSSSSSSGRGSV--------EQLEEAAR-----ARAAA---AEARLPCPRCRSEDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRPVL---HGASTVI-------SADNPLAGS-----ASQGMVN-----------------------------------------------------GLGFHPDYGWS------------QVVPSSAYLG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HGEIEQCLWLVNQYQPKVR------------------STGTPTNPSSLRSTNTKKNNSSTCNFLP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [217]
lcl|Ppa_CDF1_16_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADSGLGSGEGDSPVQS--------KGNGGAIR-----EK------PVKVLPCPRCQSMNTKFCYYNNYNVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRKKLRMA---RSRTDPY-------LRAGEAPQT-----GPLSSMS------------------------GAD-GLLGASTCVQQLPMLPS-----TPGLVCFGTQLSGFA-----------PAGSQLPFVQ-TALEQSQSMYTRVQ---------------------QKPLAGLQ--EVPDLQSVYDVP---------------------------------------------------------------------------QVPQFPQVGSELLNMSSLMMDDGFFKMPGDLHLPSDSE---ALASVITKADLWSNPM--QQLSSLNGSTWEDSR-------PSKSSFTSQLQNLSGYEDRRNPMNQVNVNMFL------------------------------------------------PNTKPQFWGSAIMNQKS-LMDDRLVPHTSWDENQSTQT?-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [329]
'gi|37051131|dbj|BAC81662.1| DNA binding with one finger 5 protein [Pisum sativum]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPSSD----SGESRRSIKPQ-----NRPGAPAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHLCKACRRYWTHGGTLRDIPVGGGTRKNAKRS---RTHHVAV-------TSSSSSSAV-----TSAPEQN------------YPSMTPIQGGSFPYG-GVDGEGK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QNMSVCGSFTSLLNNNPQQNSGFLALGGFGLGLGHGLGDMGFGIGR----------------------------------------------------EWSFPGMMDGSNMGVPVVSSGIGNSWQLEGGETGFVGGGGDCFSW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------PGLAISTPGNGLK------------------------------------------------------------------------------------------------------------------------------------------------------------   [234]
lcl|Ppa_CDF1_2_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MIPSS---------------------SSHEPQQQTQQ-HQQEKKASQL----FAQRALQERRL-----KP------PDQVIACPRCQSLNTKFCYYNNYSLTQPRHFCKSCRRYWTAGGTLRNVPVGGGCRKNKRTK---PRTPEGS-------NSGTGSADV-----DSMSSSG------------------------------------------LQHPGFTPTSIGFLSSSEGSPYGLADPSIRADSSMSQSSKIGLP-MPYQPGGQSSALAQHQQLHPFEGGIPGLGFFRNPGRVAETALNLHPTFQMPTGDLSEMFD---------------------------------------------------------------------------------------------------------------------------------------------------------TSSVSRTGALAALSEGLGTFNVNAEG?-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [254]
lcl|Ppa_CDF11003236040_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MIPSS---------------------SNHEQQQQQAQLQQQEKKASQL----FAQRALQERRL-----KP------PDQVIACPRCQSLNTKFCYYNNYSLTQPRHFCKSCRRYWTAGGTLRNVPVGGGCRKNKRTK---PRTPEGQ-------NGRTGSADG-----DSMSVPV------------------------------------------LQHPGFNSTSIDFLSSSEGSAFGSADPSMRADSPMCQSTEGGLP-M-FHPGAQSSSIAQHQLPQPFDSGIPGLNFFRNANRVPGTTLNLHPTFQMPTGDLSEMFD---------------------------------------------------------------------------------------------------------------------------------------------------------TSNAPRVGALSTLSEGLGYFQY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [249]
lcl|Ppa_CDF1_10_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------MVLLTASKDGTT-E-------------------GSLEKKARKLALDGTTIPLTP--------DSPGKKAL-----EK------PQKVLPCPRCESMNTKFCYYNNYSVNQPRHFCRQCQRYWTVGGTLRNVPVGGGSRKKHRHQ---RQEPYMR-------TAPGSVTSP-----LALA--------------------------TAGG-QPGMANMGFQQLL---------THDMSGFNFSQLP-------------GFVPQTLYPA-YPVDQSQGMYAQPL---------------SNKSTQHEFQSMHPACGVMNPQSLPTATGHYCGTDVGAQLQGDNGVNTNGAAGP------------------------------------------------------------------------------------------------VKHEFWSNMM--PQNPHLQAGNHSVQSLWEECKVTSGTVPTTTADSDARKAGALVDLQAVAKS---------------------------------------------------GGYDSSMLLHLGLNTRP-Q-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [312]
'gi|21538785|emb|CAC85946.1| dof zinc finger protein [Hordeum vulgare subsp. vulgare]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------MPVGPTPG-T-------------------AAGPPEVGGLPRSSAANEAAAG----QQTRPNSMTER-----ARMARVPQPEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSS---KSSAGAA-------SSSKPSSSS-----ARQLPGG-----------------------ASSM-PSTATTTLGPDGASIPPGLSSMSHHLPFMG------------------AMHPPGPNLG-LAFSAGLPQLAMQQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHHHMDGVDQFPLASGGGATFGASL----------------------EQWRVQQQQQQQFPFLELPPAPPMYQLGLQANRAA-----------------GSSAAAPSPVMFTLGQSSASTSRRDEGSM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------KQTDSKGQEMTLQRHYMQWRLYPRGWRLGWQPSDNTAMAWHWQ------------------------------------------------------------------------------------------------------------------------------   [324]
'gi|50947117|ref|XP 483086.1| putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] >gi|42408485|dbj|BAD09665.1|'    --------------------------------------------------------------------------------------------------------------------------------------------------------------MQEQQPETGRRPAQ-Q-------------------FATVDLRRPKGYAAAPATPQPG----SAATAAAAAGP-----AATAAAAAAGEGDPCPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSSSS---SSSSSSS-------SAAAAAPAA-------------------KRQKTSKKRRVTTPEPLAAT-TPVLTEAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSAAKTTTEATSEKKTTTSTTTTTPPAPDTTSEITTELVV-------------------------PAVEEDSFTDLLQP---DSAAVTLGLDFSDYP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SITKSLADPDLHFEWPPPAFDMASYWPAGAGFADPDPTAVFLNLP----------------------------------------------------------------------------------------------------------------------   [276]
lcl|Ppa_CDF1_4_1_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------MYLPMNRQKVLRDFEDDSND-E-------------------LQAGLNDSRSPSGEGDSPVGT--------RGNGGCIR-----DK------LVKVIPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRKKTRTR---SRTDPYL-------RSGTP--QT-----SPIRTLS-----------------------GSGG-DLLSASACMQQLSMLPP-----SGGMLGFG-DQLS------AFG----PAGLQLPSSH-LALEQSLGTYPPL----------------------QKPLSGLQ--EVPDLQSLYEVP---------------------------------------------------------------------------QVPQIPQVSPAMLSSFSPMMMNSGFFLP-EMHVPSQSD---ALASVMAKACMWSNPA--QQLPSLNGISQAQRSWEES---QSKPPMNSQLQNLSGYEERAAPANQMNASGWP------------------------------------------------QNLKPGFWEAALM-PKP-SSDER---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [338]
lcl|Ppa_CDF1_8_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------MVHLPASKDDTS-V-------------------GSLEKESRKLTLGATGTPASP--------ASPGKKAL-----EK------PQKVLPCPRCESMNTKFCYYNNYSVNQPRHFCRQCQRYWTVGGTLRNVPVGGGSRKKNRHQ---RQEPYLR-------TGPGSVGSP-----LAMA--------------------------TAGG-QPGMPNMGFQQLL---------THDMSGFNFSQLP-------------GFVPQNHYPT-YSVDHTQGMYTQPL---------------SSKTAQQEFQSMRPMYGTMIPHSMPPVTGNYYGPDLGSQLQVDNAVNTNGTVGS------------------------------------------------------------------------------------------------VKPEFWGNMV--PQNPHPQAGNHPVFSMWEQSN-PTSATPASAADQGAGKTGVPATLQTIPKN---------------------------------------------------GGYDSSMLLHLGLNSRP--QLGGKPAAWNQNQLDSRGGTLPTNGSSPPHGSSTIEEEGSTPTN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------?------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [355]
'gi|15218007|ref|NP 175581.1| ADOF1; DNA binding / transcription factor [Arabidopsis thaliana] >gi|12321673|gb|AAG50875.1| dof z'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQDLTSAAAYYHQSMMMTTA--------------------------KQNQPELPEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKSNKRS---GSSPSSN-------LKNQTVAEK------------PDHHGSGSEEKEERVSGQEMNPTRMLYGLPVGDPN------GASFSSLLASNMQMG----GLVYESGSRWLPGMDLGLGSVRR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDDTWTDLAMNRMEKN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [194]
'gi|517258|emb|CAA46875.1| DNA-binding protein [Zea mays] >gi|1346559|sp|P38564|MNB1A MAIZE Dof zinc finger protein MNB1A'           --------------------------------------------------------------------------------------------------------------------------------------------------------MQEASSAAAAGAEPGRRAAQHQ-------------------FAGVDLRRPKGY------------------------------AAPAPAPAVGEGDPCPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSSS---SSSSSYV-------AAADADRQP-------------------KKKPASKKRRVVAPAPELAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AADPGKTATTTTTTSEITTETGA------------------------------------------LEDSDSLAHLLLQPGTEDAEAVALGLGLSDFP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SAGKAVLDDEDSFVWPAASFDMGACW-AGAGFADPDPACIFLNLP----------------------------------------------------------------------------------------------------------------------   [238]
'gi|37051127|dbj|BAC81660.1| DNA binding with one finger 3 protein [Pisum sativum]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEKQGQEL-----LQQHHQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNNKRS---TSSSNGP-------TSTTTLIKR-----PISTIET------------------------------ATTSNSSSPSSTHSSTSNHMNPMFYGLSS-----------------TNNPCDPNLP-FSRFNITSRLSTSSGYDLQPQMNFFGLGFSSGFENNGYTNGFNTSNNNYDSIFSSS-------------------------------------------------------------------------------------------------------------------------------------------------------------TSASNNTSVMPSVLSSTLLQHKFFDDGLKYGSDAGSNGAF-------------------------------------------------------------QDLQFGSKMQNQMEHIGGFYDPASSIYLNATSSSAIGVWNDQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GANNIGSSVTSLI------------------------------------------------------------------------------------------------------------------------------------------------------------   [290]
lcl|Ppa_CDF1_3_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------MHLPLQHQARLAGSFDDENEELDAQLQANSASHS-H-------------------SHHSQEDDASQSQGSKGSGGD---------------------AAVPDGAPKPKNLPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRKKHSRS---RSRSDPY-------YRPEPNPSH-----DSDGEMEQI------GNPLHPGLAAAAMAGIIPQ-DIASLHS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAGFPDFGELSEAPFHPNKIYSLLQLALLQNEGMYGIPGMPFTVGNPDHEQAELHQLFQGQAASNPGNLLTAAAAMMFMPELDPAAVALLHKATLWA-----------EAQQVQAMARRQTAQSAPPWVEERECKPTVSAHMN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------REIAAMEELRH?-------------------------------------------------------------------------------------------------------------------------------------------------------------   [320]
'gi|15027981|gb|AAK76521.1| putative Dof zinc finger protein [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQDPAAYYQTMMAKQQ--------------------------QQQQPQFAEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNATKR---STSSSSS-------ASSPTNSSQ-----NKKTKNPDP------DPDPRNSQKPDLDPTRMLYGFPIGDQDVKGMEIGGSFSSLLANNMQLGLGGGGIMLDGSGWDHPGMGLGLRRTEPGNN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNNPWTDLAMNRAEKN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [204]
'gi|15232514|ref|NP 188764.1| ADOF2; DNA binding / transcription factor [Arabidopsis thaliana] >gi|23297302|gb|AAN12936.1| Dof z'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQDPAAYYQTMMAKQQ--------------------------QQQQPQFAEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNATKR---STSSSSS-------ASSPSNSSQ-----NKKTKNPDP------DPDPRNSQKPDLDPTRMLYGFPIGDQDVKGMEIGGSFSSLLANNMQLGLGGGGIMLDGSGWDHPGMGLGLRRTEPGNN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNNPWTDLAMNRAEKN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [204]
'gi|15224320|ref|NP 181295.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|3236241|gb|AAC23629.1| putative DOF'     ------------------------------------------------------------------------------------------------------------------------------MVFSSIQAYLDSSNWQQAPPSNYNHDGTGASANGGHVLRPQLQPQQ-Q-------------------PQQQPHPNGSGGGGGGGGGSI--------RAGSMVDR-----ARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTK---SNSNNNN-------NSTATSNNT-----SFSSGNA-----------------------STIS-TILSSHYGGNQESILSQILS--PARLMNPTYNHLG------DLT----SNTKTDNNMS-LLNYGGLSQDLRSI---------------HMGASGGSLMSCVDEWRSASYHQQSSMGGGN-----------------------------------------------------------------------------------------------------------------------------------LEDSSNPNPSANGFYSFESPRITSASISSALASQFSSVKVEDNPYKWVNVNGNCSSWNDLSA------------FGSSR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [330]
'gi|50937609|ref|XP 478332.1| putative Dof zinc finger protein [Oryza sativa (japonica cultivar-group)] >gi|22093688|dbj|BAC0698'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MAGAG-G-------------------AATAAAGGGGGGGVAAGRSGGG----GGGGAAAA--------AGAGAPDPRAEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR---SGGAAPG-------GGVGRGGPG-----GGAAAAVSSAGGGAAGTSPASSLALPQPGSLPSL-SSALGLTGGTSLASLLLGSGGSGGDHLGLFQAMQSVVSDAAAFEMHQQHQSQVDHLLG-LGYGAAGAQIQAAK---------------PWLHDGGATGGLLDGFYAPLLSGSIVPGLEELQ-------------------------------------------------------------------------------------------------------------------------------------------------------VKAEATTGDHQQKSSAAAAGEQSWDLPTPSSSNVEASIIA-------------------------------------------------------SDALMAAAAASMNPAVSAAAASTAPSAQSLLYWGNGGIGAAAAAWPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANCGSSIATLF--------------------------------------------------------------------------------------------------------------------------------------------------------------   [359]
'gi|1212759|emb|CAA61485.1| DNA binding protein [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKPN-----GVTVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGGTRKSAKRS---RTCSNSS-------SSSVSGVVS-----NSNGVPLQT------TPVLFPQSSISNGVTHTVT-ESDGKGSALSLC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSFTSTLLNHNARATATHGSGSVIGIGGFGIGLGSGFDDVSFGLGRAMWPFST---------------------------------------------VGTATTTNVGSNGGHHAVPMPATWQFEGLESNAGGGFVSGEYFAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDLSITTPGNSLK------------------------------------------------------------------------------------------------------------------------------------------------------------   [240]
'gi|15229744|ref|NP 190610.1| OBP1; DNA binding / transcription factor [Arabidopsis thaliana] >gi|7630027|emb|CAB88324.1| DNA bi'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPTSDS----GEPRRIAMKPN-----GVTVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGGTRKSAKRS---RTCSNSS-------SSSVSGVVS-----NSNGVPLQT------TPVLFPQSSISNGVTHTVT-ESDGKGSALSLC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSFTSTLLNHNAAATATHGSGSVIGIGGFGIGLGSGFDDVSFGLGRAMWPFST---------------------------------------------VGTATTTNVGSNGGHHAVPMPATWQFEGLESNAGGGFVSGEYFAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDLSITTPGNSLK------------------------------------------------------------------------------------------------------------------------------------------------------------   [253]
'gi|6092016|dbj|BAA85655.1| elicitor-responsive Dof protein ERDP [Pisum sativum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDPSSQQMSRQSSMENMLVC--------SKEQQESK-----PKPQ----PEQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSS---SSKRIQD-------QAFAPNHNP-----FSNLPH-----------------------------------------------------------------------------FDQSNDFALR-LARLQKQSCGG------------------QMGYDENELSMLGNSGSSMNQSMSIN--------------------------------------------------------------------------------------------------------------------------------------------------------------HGFMDAIRSGLFLGNGMHYNNSVQNMYGGGYGNGDNGEVN---------------------------------------SGNNNCGVSEEMMFNYDQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EMSHCNAAINMKQEQSESRVFGGFPWQINGGIGNMGEVEQARASWNNGFTTPSWQGLLHSPLM------------------------------------------------------------------------------------------------------   [283]
'gi|1061306|emb|CAA56287.1| Dof2 [Zea mays]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KGYPV----------------------------PVAKEERPAPGGDPCPRCGSRDTKFCYYNNYNTSQPRHLCKSCRRYWTKGGSLRNVPVGGGTRKSSSSS---SSSSAAT-------TTTTTTSTS-----PGAAPKATK------RSKNSKRRRVAPAPDPAAPGTDAST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADVASTAPSAATVAASEKPSATEHAAAAVATEKPPAAPPV---------------------------------------------SVGAFADTSPAP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAGSGGVRELLPHPSRFEWPSGCDLGPPYWGWGTSVLADTDPALFLNLP----------------------------------------------------------------------------------------------------------------------   [225]
'gi|3341468|emb|CAA08755.1| Dof zinc finger protein [Nicotiana tabacum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDTSHWPQGIGLVKAVEPSKP----------VPTERK-----PRPQ----KEQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS---SSSNNSS-------SSTSSSYKK-----IPDLTIP---------------------------------TSSQNPKI-----------------------------------INEPHDLNLA-FNPSATSNFSNISE---------------FMALPLMNPNSTTS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMSSIMPQLSD-SNNIMYSSSSTGLPNL--------------------------------------------HDLKPTLNFSLDG-FDNNNGYGSLQG----------ETAG?KLFFPLDDLKNVSTPNDD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HEFDEQNRGQAAESHGFWNGMLGGGS----------------------------------------------------------   [262]
'gi|37051129|dbj|BAC81661.1| DNA binding with one finger 4 protein [Pisum sativum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------MFGNGNCDVDNEKTIITSSK-W-------------------TQSEIDDHKVSMASSTGNRVME----K---------------PGQELLQQQQQALRCPRCDSSNTKFCYYNNYSLTQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLK---RPTYPCSNNNNIDFSASPSSSTP-----SSVVANPNPPSQSQQQQQQQQHHSFDIAATSNHI-NTMLYGGNSCHDVMNFPFSTRFNSTTR---------------------VSNPASGYDN-LPQNGLGLGFSSGILMSAAGGEVNLNHHHHHHHDEGSYRNGFSTSNNNNYSSIF---------------------------------------------------------------------------------------------------------------------------------------------------------------GSSSTTTPVMASLLSSTLLQQKFMGTGGGIKGGGGGGGGD------------------------------DDPFHHHQEMDSKEVKLGEGLQNRLDQWNMNNLNGNGGAVFQNQMENMGLSDNNASLYWNNNHNNSNNNTSAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGLSSVWSTDQPGSNSVSSLI---------------------------------------------------------------------------------------------------------------------------------------------------   [396]
'gi|60392878|sp|O24463|PBF MAIZE Dof zinc finger protein PBF (Prolamin box binding factor) >gi|2393775|gb|AAB70119.1| prolamin b'    -----------------------------------------------------------------------------------------------------------------------------------------------------------MDMISGSTAATSTPHNN-Q-------------------QAVMLSSPIIKEEARDPKQTRA----MPQIGGSGERK-----PRPQ----LPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKNKHAS---RFVLGSH-------TSSSSSATY-----APLSPST----------------------------NASSSNMSINKHMMMVPNMTMPTPTTMGLFPNVLPTLMPTGGGGGFDFTMDNQHRSLS-FTPMSLPSQGPVPM---------------LAAGGSEATPSFLEMLRGGIFHGSSSYN------------------------------------------------------------------------------------------------------------------------------------------------------------TSLTMSGGNNGMDKPFSLPSYGAMCTNGLSGSTTNDARQL------------VGPQQDNK----------AIMKSSNNNNGVSLLNLYWNKHNNNNN-NNNNNNNNNNNKGQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [328]
'gi|52077334|dbj|BAD46375.1| putative DNA-binding protein [Oryza sativa (japonica cultivar-group)]'                                  ------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEAGRRPAP-Q-------------------FAGVDLRRPKGYPAAAQL------------------------TPAAEEAAAGVGDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGSRKSSTSS---SSAAAAA-------ASSSSSPSS-----PAKSPK---------RSKNSKRRRVSPPPPQPVP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APPPPTTADAADVAAPTAPEATTKKAPEDLTAAAATQPAV-----------------------------------------------ALGLGVADGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGKEHLDT-SPFEWPSGCDLGPY---WPTGVFADTDPSLFLNLP----------------------------------------------------------------------------------------------------------------------   [230]
'gi|55297232|dbj|BAD69018.1| putative dof zinc finger protein [Oryza sativa (japonica cultivar-group)]'                              ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEFHPVPGLAGRLFGG----------------------AAAAAAVAAVEEVRCPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVGGGCRKPKRPA---PPPSSSF-------TGGGGGGGGCGHRDSKSARSAGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GDGSGSTASATATPAAAPASSNTLSAAVSQPSSVDALSPP----------------------PAPMFADQATAFASLFAPPPPPPSQALPAFASFTA-QPKAEEDVADAPALAATEQHRSSSAASFAAHSISPPFAAARSSDG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------PAAAAAAAAADWAPPTAVLDAGMFDLAGAIGGDTSYWNAASWTDHDGTIYLP---------------------------------------------------------------------------------------------------------------------   [289]
lcl|Ppa_CDF1_11_1_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------MHLPVNHQILLGDFEDDSNE-E-------------------LDARIASSGSGSGGGDSPGSS--------RGNGGCIR-----SR------PVKVIPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRKKIRTR---NRNDTYL-------LGGTP--QT-----SPVGSLF-----------------------GSGG-DLLSSSACMQQLSMLPP-----TGGMLGFG-NQTS------GFA----PAVPPLPYLQ-FALEYTQGLHPSV----------------------QKPLAGLQ--EVPDIQSLYDT----------------------------------------------------------------------------QASQAPQVNSSIFNSSSSLMLNSGVTLP-TLHAPSHSD---TLPSVMAKTGLWTVAA--QQLPSLNGTTQVQSSWQDK---QSKPSMSSQLQHRSGYVERMNPINHMNAIMFP------------------------------------------------HNVKPGSWEAALMHSRP-VMNDRLVPHTSWDENQSSTHTNLSPNASSTTDDE?---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [368]
'gi|51979356|ref|XP 507527.1| PREDICTED B1121A12.10 gene product [Oryza sativa (japonica cultivar-group)] >gi|50912327|ref|XP 46'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEFQSIPGLAGRLFGGAA----AADIRRAQAQQ---GPASRCGGIPSPEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSG---SSSAASS-------APSTPTAATDNAKNQRRASAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPRSSSGGSGNTSPTAAAATTPTT------PATPSSNTIAVINHATTTTTTTN-PFPTDVPPPAPIFADQAAALASLFAPPPPPPLPV----FSFAA-QAKTEDGIASVLLAGQTTAP------TAATVADMTPFTSLDAGIF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELGDVPPAAYWNAGSCWTDVPDPNVYLP---------------------------------------------------------------------------------------------------------------------------------------------   [282]
'gi|1360084|emb|CAA66604.1| Zn finger protein [Nicotiana tabacum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKPMEEIIPKNTNTITTIC----SSKPSTHIERK-----IRPHQ---KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCKRYWTEGGSLRSIPIGGGSRKSKKSS---STNCSSS-------NTVLREFSK-----NVVAPVLDPPK------------------------------------------------------------------------MEGSQDLNLG-FSCDFK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TISELIQVPNNSFMPMPISD---------------------------------------------------------------PNSVYSSLNFSLDY------GLGISGDYENNLQDVQDSTTSGRLLFPFEDLKQISNTSI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DCAEENRDGESNGYWNAVLGGNGGSW-------------------------------------------------------   [238]
'gi|37051125|dbj|BAC81659.1| DNA binding with one finger 2 protein [Pisum sativum]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-D-------------------SSSEQQHQQMSNQSLESMLTC--------SKGEQDKK-----AKP-----QPEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSS---SSVSRRI-------QDQAFVNNP-----NPVTCFPSL--------------------------------------------------------------------------SYDSNDLTLA-LARLQKGQLGFDHE---------------HDFSILGNHANSNININTNTSCAVLNN-------------------------------------------------------------------------------------------------------------------------------------------------------------HGMNHSSNNHGFFEALMGSQNNVQNLYYGYGNRDMG--------------------------------------------EVDNGNVSGEMMLPYDH-EMSI---------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TQAVTVTTMKQEMCNVREQNESRVLLGFPWQFNNGDSNMDEIDHSGRAGWNGLTSPWHGLLNSPLM-------------------------------------------------------------------------------------------------------   [296]
'gi|47900733|gb|AAT39305.1| putative elicitor-responsive Dof protein [Solanum demissum]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCIMDQQQQEMSSQTLESML----VCTKPDQDQKK-----PRPA----EQQPQKCPRCDSANTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKKLS---STTSAKR-------SSQDNISPN-----ISNPIPS----------------------------------------------------------------------------YDSSTDLSLA-FARLQKQTNAHLEI---------------DQEHDNNNMSMMYNTGNNCTSTTFLDALRGGFLENAPNHPGLF---------------------------------------------------------------------------------------------------------------------------------------------HHNMYNYANMGQLVENGEMGMSYDQDQMSIGTSTTMMTTI-----------------------------------------------------------------------------------------------------VK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------QEMCNMARSTEGHDLNNSNNNNKVLCGFPWQQMNGDHHVNNMNTNDFEYSTNKQSWNGFGGSSNWHGLINSPLM-----------------------------------------------------------------------------------------------   [302]
lcl|Ppa_CDF1_12_1_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------MQLPGHQNDSAALIGSKPQC-S-------------------PNAALSGGSDAPASPSSPGSP--------TKIANATR-----EK------PAKVIPCPRCESMNTKFCYYNNYSVTQPRHFCRQCQRYWTAGGTLRNVPVGGGSRKKSRHPRGGAAEPYLQ-------RAGSYGVAS------------------------------------AGE-HSIMQNVGFQQML---------TQDMVGLNFAQLPGF-----------VPPNTHHYVP-CSMDHSDGVYAPMT---------------NKPPGQEDLSNLNVLYGTAPMGG-------------------------------------------------------------------------------------------------------------YYPAPEMGG---ENSGNAVKPEFWATSMAAPRVVVPGSNPSRD-----------------------------------------------------------------------------------------GRLDSSMLLNLGLNNRS-PTQGGGNGKPMWDHQDLKPALPQQKNGSPPHGSSTIEEEGSTPTN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GYSNNRYEEGDTVSSMWHDMQHDLDNIFQ--------------------------------------------------------------------------------------------------------------------------------------------   [341]
'gi|67523403|gb|AAX54942.2| Dof1 [Triticum aestivum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQDFQSIPGLAGRLFGGAA----AADIRRVQGPASRCGVFSQAASAQPEAAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSS---SSASAPS-------TPAATDAKS-----QRRASAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSSRSNSGSGSASPTAAAEETTTTETEPPPPPTPSSNSNS--NAVSFANRMTNYPFAADVPPLAPIFADQAAALASLFAPPPPPPLPV----FSFSA-EPKMEEAIGSLLLPGQEASQEPEEPTCTSTVADMAPFMSLDAGIF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELGDASPADYWNGGSCWTDVQDPSVYLP---------------------------------------------------------------------------------------------------------------------------------------------   [291]
'gi|1360078|emb|CAA66601.1| Zn finger protein [Nicotiana tabacum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------LPLPFF-N-------------------MDTSHWPQGIGLAKAVEPSKP---------VPVTERK-----PRPQ----KEQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKRSN---SSSNNSS-------SSTSSSYKK-----IPDLTIP-------------------------------TSSSTQNPKI-----------------------------------INEPHDLNLT-FNPSTTSNFSNISE---------------FMALPLMNPNSTTS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMSSIMPQISD-SNNIMYSSSSTGLPNL--------------------------------------------HDLKPTLNFSLDG-FDNNNGYGSLQG----------ETAGAKLFFPL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [234]
'gi|21538793|emb|CAC85950.1| dof zinc finger protein [Hordeum vulgare subsp. vulgare]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ST-A-------------------GDDAVAAGRRKAGTPPAL------------------------PPPP----AEQAVRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRSVPVGGGCRKNKRSR---SGSSAAS-------ASRGLSLTT-----PAGGTAD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QDQHAARMSVGGFPAGGGGGDFRGVVG------------MLPV------------------------LHSPAVVGQYVPFGDWS-SGETNGGGRGTNGSAGTGNGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [178]
lcl|Ppa_CDF11029221668_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA-------------------LQTPSNGGGDARASPSSPGSP--------SKNAIATR-----EK------PDKVLPCPRCESMNTKFCYYNNYSVTQPRHFCRQCQRYWTAGGTLRNVPVGGGSRKKSRHPRG-IAEPYLQ-------RSGAFGVAS------------------------------------SGE-QSAMQNVGFQQML---------TQDMVGLNFAQLPGF-----------GPQNPHHYLP-FSMDHTQVAYVPMT---------------NKPPCQEDLSNLHAMYGNAPMSAPTGG---------------------------------------------------------------------------------------------------------YYLAPELGG---ENSGNAVKPEFWVNNMVAPQVPVPGSNPNQTVNRN-------------------------------------------------------------------------------------GCLDSSMLLNLGLNNRP-SAQVSGNGKPVWDQQDVKRPLSQQKNGSPPHGSSTIEEEGSTPTN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYSNS?-------------------------------------------------------------------------------------------------------------------------------------------------------------------   [306]
'gi|21553763|gb|AAM62856.1| putative DOF zinc finger protein [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MDPEQ-E-------------------ISNETLETILVSSTKGSNNNN--------KKMEEEMK-----KKVSRGELGGEAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSS---SSAFSKN-------NNNKSINFH-----TDPLQNP-----------------------------------------------LITGMPPSSFG------------------YDHSIDLNLA-FATLQKHHLSSQAT---------------TPSFGFGGDLSIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSTNDVGIFGGQNGTYNNSLCYGFVSGNGNNNQNEI------------KMASTLG----------------------------------------------------------------------------------MS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEGNERKQENVNNNNNNSENPSKVFWGFPWQMTGDSAGVVPEIDPGR-----------------------------ES------------WNGMVSSWNNGLLNTPLV-------------------------------------------------------------   [288]
'gi|18401763|ref|NP 565673.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|17979383|gb|AAL49917.1| putative DOF'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MDPEQ-E-------------------ISNETLETILVSSTKGSNNNN--------KKMEEEMK-----KKVSRGELGGEAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSS---SSAFSKN-------NNNKSINFH-----TDPLQNP-----------------------------------------------LITGMPPSSFG------------------YDHSIDLNLA-FATLQKHHLSSQAT---------------TPSFGFGGDLSIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSTNDVGIFGGQNGTYNNSLCYGFMSGNGNNNQNEI------------KMASTLG----------------------------------------------------------------------------------MS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEGNERKQENVNNNNNNSENPSKVFWGFPWQMTGDSAGVVPEIDPGR-----------------------------ES------------WNGMVSSWNNGLLNTPLV-------------------------------------------------------------   [288]
'gi|79318762|ref|NP 001031100.1| DNA binding [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------MPIISSPNTN-P-------------------LASMQSKNMIVASSHQQQQQ----------------------QQPQQ---PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK---RPSTATT-------TTASTVSTT-----NSSSPNNPH------QISHF----------------------------------SSMNHHPLFYG-----------LSD----HMSSCNNNLP-MIPSRFSDSSKTCS---------------SSGLESEFLSSGFSSLSALGLGLP----------------------------------------------------------------------------------------------------------------------------------------------------------------HQMSHDHTINGSFINNSTTNKPFLLSGLFGSSMSSSSTLL------------QHPHKPMN----------NGGDMLGQSHLQTLASLQDLHVGGNNE-DMKYKEGKLDQISGNINGFMSSSSSLDPSNYNNMWNNASVVNGAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDPTNNNVGSSLTSLI---------------------------------------------------------------------------------------------------------------------------------------------------------   [325]
'gi|30695501|ref|NP 850734.1| DAG1 (DOF AFFECTING GERMINATION 1); DNA binding / transcription factor [Arabidopsis thaliana] >gi|'    ---------------------------------------------------------------------------------------------------------------------------------------------------MINVKPMEQMISSTNNNTPQQQPTF-I-------------------ATNTRPNATASNGGSGGNTNN--------TATMETRK-----AR------PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS---TPLASPS-------NPKLPDLNP-----PILFSSQIP------N-------------------------------------------------------------------KSNKDLNLLS-FPVMQDHHHHALEL---------------LR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNGVSSRGMNTFLPGQMMDSNSVLYSSLGFPT------------------------------------------------MPDYKQSNNNLSFSIDH-HQGIGHNTINSNQRAQDNNDD-MNGASRVLFPFSDMKELSSTTQE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------KSHGNNTYWNGMFSNTGGSSW----------------------------------------------------------------------------------------------------------------------------------------------------   [284]
'gi|42562375|ref|NP 174152.3| DNA binding / transcription factor [Arabidopsis thaliana] >gi|9795606|gb|AAF98424.1| Hypothetical'     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQSKNMIVASSHQQQQQ----------------------QQPQQ---PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK---RPSTATT-------TTASTVSTT-----NSSSPNNPH------QISHF----------------------------------SSMNHHPLFYG-----------LSD----HMSSCNNNLP-MIPSRFSDSSKTCS---------------SSGLESEFLSSGFSSLSALGLGLP----------------------------------------------------------------------------------------------------------------------------------------------------------------HQMSHDHTINGSFINNSTTNKPFLLSGLFGSSMSSSSTLL------------QHPHKPMN----------NGGDMLGQSHLQTLASLQDLHVGGNNE-DMKYKEGKLDQISGNINGFMSSSSSLDPSNYNNMWNNASVVNGAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDPTNNNVGSSLTSLI---------------------------------------------------------------------------------------------------------------------------------------------------------   [311]
'gi|15228621|ref|NP 191744.1| DAG1 (DOF AFFECTING GERMINATION 1); DNA binding / transcription factor [Arabidopsis thaliana] >gi|'    ---------------------------------------------------------------------------------------------------------------------------------------MDATKWTQGFQEMINVKPMEQMISSTNNNTPQQQPTF-I-------------------ATNTRPNATASNGGSGGNTNN--------TATMETRK-----AR------PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS---TPLASPS-------NPKLPDLNP-----PILFSSQIP------N-------------------------------------------------------------------KSNKDLNLLS-FPVMQDHHHHALEL---------------LR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNGVSSRGMNTFLPGQMMDSNSVLYSSLGFPT------------------------------------------------MPDYKQSNNNLSFSIDH-HQGIGHNTINSNQRAQDNNDD-MNGASRVLFPFSDMKELSSTTQE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------KSHGNNTYWNGMFSNTGGSSW----------------------------------------------------------------------------------------------------------------------------------------------------   [296]
'gi|21537120|gb|AAM61461.1| zinc finger protein, putative [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MDTAKWP-------------------QEFVVKPMNEIVTNTCLKQQSN----PPSPATPVERK-----ARPE----KDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSS---SNSSSSS-------PSSSSSSKKPLFANNNTPTPPLPHLNPKIGEAAATKVQDLTFSQGFGN-------------------------------------------------AHEVKDLNLA-FSQGFGIGHHHHSS---------------IPEFLQVVPSSSMKNNPLVSTSSALELLGI----------------------------------------------------------------------------------------------------------------------------------------------------------SSSSASSNSRPAFMSYPNVHDSS-----VYTASGFGLSY-----------------------------------------PQFQEFMRPALGFSLDG------------GDPLRQEEGSSGTNNGRPLLPFESLLKLPVSSSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TNSGGNGNLKEINDERSDHE--------------------------------------------------------------------HEKEEGEADQSVGFWSGMLSAGASAAASGGGSWQ-----------------------------------------------   [353]
'gi|15239087|ref|NP 201362.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|52421291|gb|AAU45215.1| At4g35930 [A'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSSHTNLPSPKPVPKPD----HRISGTSQTKK-----PPSSSVAQDQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKSI---KPNSSMN-------TLPSSSSSQ-----RFFSSIMED------SSKFFPPPT-----------------------------------------------------------TMDFQLAGLS-LNKMNDLQLLNNQEVLDLRPMMSSGRENTPVDVGSGLSLMGFGDFNNNHS-------------------------------------------------------------------------------------------------------------------------------------------------------------------PTGFTTAGASDGNLASSIETLSCLNQDLHWRLQQQRMAML-------------------------FGNSKEETVVVERPQPILYRNLEIVNSSSPSSPTKKGDNQTEWYFGNNSDNEGVISNNANTGGGGSEWNNGIQAWTDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NHYNALP------------------------------------------------------------------------------------------------------------------------------------------------------------------   [316]
'gi|18408092|ref|NP 564836.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|28827674|gb|AAO50681.1| putative Dof'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MDTAKWP-------------------QEFVVKPMNEIVTNTCLKQQSN----PPSPATPVERK-----ARPE----KDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSS---SNSSSSS-------PSSSSSSKKPLFANNNTPTPPLPHLNPKIGEAAATKVQDLTFSQGFGN-------------------------------------------------AHEVKDLNLA-FSQGFGIGHNHHSS---------------IPEFLQVVPSSSMKNNPLVSTSSSLELLGI----------------------------------------------------------------------------------------------------------------------------------------------------------SSSSASSNSRPAFMSYPNVHDSS-----VYTASGFGLSY-----------------------------------------PQFQEFMRPALGFSLDG------------GDPLRQEEGSSGTNNGRPLLPFESLLKLPVSSSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TNSGGNGNLKENNDEHSDHE--------------------------------------------------------------------HEKEEGEADQSVGFWSGMLSAGASAAAS-GGSWQ-----------------------------------------------   [352]
'gi|18416267|ref|NP 567693.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|55583949|sp|Q8LAP8|DOF46 ARATH Dof z'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MDTAQWP-------------------QEIVVKPLEEIVTNTCPKPQPQPLQPQQPPSVGGERK-----ARPE----KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH---SSSSDIS-------NNHSDSTQP----------ATKKHLSDHHHHLMSMSQQGLTGQNPKFL-------------------------------------------------ETTQQDLNLG-FSPHGMIRTNFTDL---------------IHNIGNNTNKSNNNNNPLIVSSCSAMATSSLDLIR-----------------------------------------------------------------------------------------------------------------------------------------------------NNSNNGNSSNSSFMGFPVHNQDP-------ASGGFSMQDH----------------------------------------YKPCNTNTTLLGFSLDH---HHNNGFHGGFQGGEEGGEGGDDVNGRHLFPFEDLKLPVSSSSA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------INVDINEHQKRGSGSDAAATSGGYWTGMLSGGSWC--------------------------------------------------------   [342]
'gi|4996640|dbj|BAA78572.1| Dof zinc finger protein [Oryza sativa]'                                    ---------------------------------------------------------------------------------------------------------------------------------MDAAHWHQGLGLVKPMEEMLMAANAAAGANPNPAATA---------------------------PSSVTGGALRGGGGGGAPPVA-----GGAGAGSTERR-----ARPQ----KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS---SSAASAS-------PASASTANS-----VVTSASM------------------------SMSMASTGGGASKNPKLV----------------------------------HEGAQDLNLA-FPHHGGLQAPGE-----------------FPAFPSLESSSVCNPGGPMGTNGR----------------------------------------------------------------------------------------------------------------------------------------------------------------GGGALSAMELLRSTGCYMPLQVPMQMPAEYATPGFALGEF-------------------------------------RAPPPPPQSSQSLLGFSLDA-HGSVGGPSAAGFGS-SAGLQGVPESTGRLLFPFEDLKPTVSSGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGASGGGAGVDGGHQFDHG--------------------------------------------------------------KEQQAGGGGGGPGGHDTPGFWNGMIGGGSGTSW------------------------------------------------------   [378]
'gi|15241827|ref|NP 195866.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|7413635|emb|CAB85983.1| putative zin'    ----------------------------------------------------------------------------------------------------------------------------MVFSSFPTYPDHSSNWQQQHQPITTTVGFTGNNINQQFLPHHPLPPQQ-Q-------------------QTPPQLHHNNGNGGVAVPGGPG----GLIRPGSMAER-----ARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK---NSSGGGG-------GSTSSGNSK-----SQDSATSND------QYHHRAMANNQMGPPSSSS-SLSSLLSSYNAGLIPGHDHNSNNNNILGLGSSLPPLK-----------LMPPLDFTDN-FTLQYGAVSAPSYH---------------IGGGSSGGAAALLNGFDQWRFP------------------------------------------------------------------------------------------------------------------------------------------------------------------ATNQLPLGGLDPFDQQHQMEQQNPGYGLVTGSGQYRPKNI----------------------------------FHNLISSSSSASSAMVTATASQLASVKMEDSNNQLNLSRQLFGDEQQLWNIHGAAAASTAAATSSWSEV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNNFSSSSTSNI-------------------------------------------------------------------------------------------------------------------------------------------------------------   [399]
'gi|7688355|emb|CAB89831.1| Dof zinc finger protein [Solanum tuberosum]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------MVFSSFPVYLDHPNLHQLQQPDGHQ-------------------QGNTGLENPTLQPPPMQVGASP----GSIRPGSMVDR-----ARLAKIPLPEAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK---SNNNNNS-------SKTAGSNVN-----TNTIASG-----------TSTSASPSSCSTEIMNGRHHFSHEQPPQLTPLMAAFQNLNHHYGGFQPPPLVSTHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GNGTGALGHHHEMGFQIGSSTNTNNLPVPPGGGSDHQWRL--------------------------------------PSLAANTNLYPFQHGTDQGIHESSSVNNNNINAHDDQGLNSTKQFLGTMENNTNQYWGGNAWTGF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGLNSSSSASHLL------------------------------------------------------------------------------------------------------------------------------------------------------------   [324]
'gi|37051133|dbj|BAC81663.1| DNA binding with one finger 6 protein [Pisum sativum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEFHSI--------------------------------EGVNHHQHLNHALKCPRCDSFNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGSRKSKHSK---NSKAVSS-------SSSTASSPP-----GADEHKS-----------NSESSTFTAAATEAISNTPISNA------------------------------------------AVTPSSKNDA-FLFGNNIIDASSFGFGFNHQHQRQHGNDQVHVAQQQNSHQRLSLLHQQQLSNGFGSLDWEASAGNCLFDVP----------------------------------------------------------------------------------------------------------------------------------------------NTVGQPYWTHSHWSDHHVNQSSLFHLP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [230]
'gi|6633819|gb|AAF19678.1| F1N19.19 [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNEIVTNTCLKQQSN----PPSPATPVERK-----ARPE----KDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSS---SNSSSSS-------PSSSSSSKKPLFANNNTPTPPLPHLNPKIGEAAATKVQDLTFSQGFGN-------------------------------------------------AHEVKDLNLA-FSQGFGIGHNHHSS---------------IPEFLQVVPSSSMKNNPLVSTSSSLELLGI----------------------------------------------------------------------------------------------------------------------------------------------------------SSSSASSNSRPAFMSYPNVHDSS-----VYTASGFGLSY-----------------------------------------PQFQEFMRPALGFSLDG------------GDPLRQEEGSSGTNNGRPLLPFESLLKLPVSSSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TNSGGNGNLKENNDEHSDHE--------------------------------------------------------------------HEKEEGEADQSVGFWSGMLSAGASAAAS-GDTNLVHVRELCKLQPPYKYSERVEKHHRMLIVHRMRCYQVPSTCKVRTFHS   [385]
'gi|7269255|emb|CAB81324.1| putative protein [Arabidopsis thaliana] >gi|5668634|emb|CAB51649.1| putative protein [Arabidopsis th'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MDTAQWPQAKVFVLTFGRDVFFYFDDQEIVVKPLEEIVTNTCPKPQPQPLQPQQPPSVGGERK-----ARPE----KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH---SSSSDIS-------NNHSDSTQP----------ATKKHLSDHHHHLMSMSQQGLTGQNPKFL-------------------------------------------------ETTQQDLNLG-FSPHGMIRTNFTDL---------------IHNIGNNTNKSNNNNNPLIVSSCSAMATSSLDLIR-----------------------------------------------------------------------------------------------------------------------------------------------------NNSNNGNSSNSSFMGFPVHNQDP-------ASGGFSMQDH----------------------------------------YKPCNTNTTLLGFSLDH---HHNNGFHGGFQGGEEGGEGGDDVNGRHLFPFEDLKLPVSSSSA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------INVDINEHQKRGSGSDAAATSGGYWTGMLSGGSWC--------------------------------------------------------   [361]
'gi|50928017|ref|XP 473536.1| OSJNBa0005N02.10 [Oryza sativa (japonica cultivar-group)] >gi|38344272|emb|CAE02073.2| OSJNBa0005N'    ---------------------------------------------------------------------------------------------------------------------------------------------------MLMAANAAAGANPNPAATA---------------------------PSSVTGGALRGGGGGGAPPVA-----GGAGAGSTERR-----ARPQ----KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS---SSAASAS-------PASASTANS-----VVTSASM------------------------SMSMASTGGGASKNPKLV----------------------------------HEGAQDLNLA-FPHHGGLQAPGE-----------------FPAFPSLESSSVCNPGGPMGTNGR----------------------------------------------------------------------------------------------------------------------------------------------------------------GGGALSAMELLRSTGCYMPLQVPMQMPAEYATPGFALGEF-------------------------------------RAPPPPPQSSQSLLGFSLDA-HGSVGGPSAAGFGS-SAGLQGVPESTGRLLFPFEDLKPTVSSGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGASGGGAGVDGGHQFDHG--------------------------------------------------------------KEQQAGGGGGGPGGHDTPGFWNGMIGGGSGTSW------------------------------------------------------   [360]
'gi|52218808|gb|AAU29474.1| At5g02460 [Arabidopsis thaliana] >gi|48475048|gb|AAT44131.1| At5g02460 [Arabidopsis thaliana]'           ----------------------------------------------------------------------------------------------------------------------------MVFSSFPTYPDHSSNWQQQHQPITTTVGFTGNNINQQFLPHHPLPPQQ-Q-------------------QTPPQLHHNNGNGGVAVPGGPG----GLIRPGSMAER-----ARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK---NSSGGGG-------GSTSSGNSK-----SQDSATSND------QYHHRAMANNQMGPPSSSS-SLSSLLSSYNAGLIPGHDHNSNNNNILGLGSSLPPLK-----------LMPPLDFTDN-FTLQYGAVSAPSYH---------------IGGGSSGGAAALLNGFDQWRFP------------------------------------------------------------------------------------------------------------------------------------------------------------------ATNQLPLGGLDPFDQQHQMEQQNPGYGLVTGSGQYRPKNI----------------------------------FHNLTHEAHYTHV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [331]
'gi|50399945|gb|AAT76333.1| putative Dof zinc finger protein [Oryza sativa (japonica cultivar-group)]'                               -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MAPAA-G-------------------DDAVVPRKGAGGGGTTTPPPP--------PPAQQQQQ-----QPLPPPPPQEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR---SAAAASR-------LSLNLPTVE-----GIGGAAADP------AAAAAARLGFLGGGTTMMM-SSSTSPLGGA------------AAAVADFQQGGAVGMLPLPRLQSPAGGGVGHHQYVP-FGEWPSGDIAGGNA---------------VNGGGGHGAVSSTIASSIESLSFINQDLHWKLQQQRLATMFLGPPG------------------------------------------------------------------------------------------------------------------------------------------SASAAAAAAQANDGGGNGAQATASGHAAGGGGGAFMHMAG------------SVPSMEAAMPSATSWFMDSCSYGLPSPPPPATAAVAATTSSNLNS-GGRSSGGDDNATSNCGSAIPAWGDISTFAMLP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [371]
lcl|Smo_CDF1_3_1_unnamed_protein_product                                    -----------------------------------------------------------------------MIVFKGEITGQEHGNEKKSILDRCESFLIGQPGIIKGRNFGRAWSGGGGGVMLLSNYGRDQVGDSSGFDGSQQAPLLHTVGGVGVGVGVVPQPSLTDVSSS-T-------------------SSLKPPPPDQLLCQSRPGQQHQ----QHQQPGQQERR-----LKPH----SDQVLKCPRCDSMNTKFCYYNNYSLTQPRHFCKNCKRYWTKGGALRNVPVGGGCRKNKRVK---QRQQDHP-------GPPAASSDE-----TGQPNGG---------------GGLPGGGGAMVG-NDGASSSSMLQQEFPVATSSGLYDQV----------------------AKASNGISLA-FDRVEGGVARIFPG---------------AAGSHPGPPPISINWATGQLGSHPQQFDPSMLGLNLPGAPIKQEPVHGDAGGDINSIF------------------------------------------------------------------------------------------------------------------------------DPGSLGMGTHAAMNEALSSYVPVENFGLNGGSGEMMWRFP------------QQPKLVSL--------------------------------LEDGS-EQDQGGGGGGGGGGGGGGGGRHH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [419]
'gi|10177472|dbj|BAB10863.1| unnamed protein product [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------MLDSSTNSPS-A-------------------ADILAACSTRPQASAVAVAAA--------ALMDGGRR-----LRPP----HDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS---SSNSSSS-------TSSGKKPSN-----IVTANTS--------------------------------------DLMALAHSHQNYQHSPLGFSHFGGM------MGS----YSTPEHGNVG-FLESKYGGLLSQSP---------------RPIDFLDSKFDLMGVNNDNLVMVNHGSNGDHHH-------------------------------------------------------------------------------------------------------------------------------------------------------HHNHHMGLNHGVGLNNNNNNGGFNGISTGGNGNGGGLMDI------------STCQRLML----------SNYDHHHYNHQEDHQRVATIMDVKPNP-KLLSLDWQQDQCYSNGGGSGGAGKSDGGGYGNGGYINGLGSSWNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LMNGYGTSTKTNSLV----------------------------------------------------------------------------------------------------------------------------------------------------------   [348]
'gi|21554185|gb|AAM63264.1| zinc finger protein-like [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MGLSY-S-------------------SNPTQLDNDQKKPSPATAAAA---------------------TRPQP---PELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST---SSAARSL-------RTTPEPASH-----DGKVFSAAG------FNGYS---------------------------------------------------------------NNEHIDLSLA-FALLNKQH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PGSSSQLGFHSELGSSHQSDMEGMF--------------------------------------------------------------------------------------------------------------------GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQQKENATYAFGNGSSGLGDPSRVLWGFPWQMNGESFGMMNIGGGGGHVDQIDSGREMWTNMNYINSGALM--------------------------------------------------------------------------------------------------   [239]
'gi|18424330|ref|NP 568920.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|29028844|gb|AAO64801.1| At5g60200 [A'    ---------------------------------------------------------------------------------------------------------------------------------------------------MDHLLQHQDVFGNYNKAREAMGLSY-S-------------------SNPTPLDNDQKKPSPATAV-----------------------TRPQP---PELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST---SSAARSL-------RTTPEPASH-----DGKVFSAAG------FNGYS---------------------------------------------------------------NNEHIDLSLA-FALLNKQH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PGSSSQLGFHSELGSSHQSDMEGMF--------------------------------------------------------------------------------------------------------------------GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQQKENATYAFGNGSSGLGDPSRVLWGFPWQMNGESFGMMNIGGGGGHVDQIDSGREMWTNMNYINSGALM--------------------------------------------------------------------------------------------------   [257]
'gi|4996642|dbj|BAA78573.1| Dof zinc finger protein [Oryza sativa]'                                    ---------------------------------------------------------------------------------------------------------------------------------M------WGLGLVKPMEEMLM------GANPNPNGSSNQPPPP-P-------------------SSAASAQRPIAPPAAGAAAGAG----AAGAGAGTERR-----ARPQ----KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS---SSVVPSA-------AASASTSAA-----VSGSVPV--------------------------------GLAAKNPKLM----------------------------------HEGAQDLNLA-FPHHHGRALQPP-E---------------FTAFPSLESSSVCNPGGNLAAANGAGGRGSV---------------------------------------------------------------------------------------------------------------------------------------------------------GAFSAMELLRSTGCYVPLPQMAPLGMPAEYAAAGFHLGEF------------RMPPPPQ---------------------QQQQQQAQTVLGFSLDT-HGAGAGGGSGVFGACSAGLQ--ESAAGRLLFPFEDLKPVVS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGDANSGGDHQYDHG--------------------------------------------------------------KNQ--GGGGGVIGGHEAPGFWNSSMIGNGSSNGGGGGGSW-----------------------------------------------   [375]
;
END;


BEGIN CODONS;
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END;


BEGIN ASSUMPTIONS;
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END;


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