#NEXUS [MacClade 4.08 registered to Hirai, ERATO] BEGIN DATA; DIMENSIONS NTAX=40 NCHAR=130; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130] [ . . . . . . . . . . . . .] 'gi|18411857|ref|NP 567109.1| FUS6 (FUSCA 6) [Arabidopsis thaliana] >gi|15293245|gb|AAK93733.1| putative FUSCA protein FUS6 [Ara' MERDEEASGPMMEMCTNGGEETSNRRPIISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDRRAEQKKVKLENELSSYR [130] gi|432446|gb|AAA32792.1|_FUS6 MERDEEAGGPMMEMCTNGGEETSNRRPIISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDRRAEQKKVKLENELSSYR [130] 'gi|26450149|dbj|BAC42193.1| putative FUSCA protein FUS6 [Arabidopsis thaliana]' MERGEEASGPMMEMCTNGGEETSNRRPIISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDRRAEQKKVKLENELSSYR [130] 'gi|6850881|emb|CAB71044.1| FUSCA PROTEIN FUS6 [Arabidopsis thaliana]' MERDEEASGPMMEMCTNGGEETSNRRPIISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDRRAEQKKVKLENELSSYR [130] 'gi|7208213|gb|AAF40112.1| constitutive photomorphogenic 11 [Oryza sativa subsp. indica]' MDVEGEVPAAAAEAVANGLGGAEPSPAPVSAEQLDVEAYAAQYTGRTRLARLLFIAERCGV-EAVELEALRMAYDEIKRGEDTMFHREVTNKINGRLGPKYALDQAWTDSVNRRAEQRKEKLESELNGYR [129] 'gi|10443485|gb|AAG17476.1| rCOP11 protein [Oryza sativa]' MDVEGEVPAAAAEAVANGLGGAEPSPAPVSAEQLDVEAYAAQYTGRTRLARLLFIAERCGV-EAVELEALRMAYDEIKRGEDTMFHREVTNKINGRLGPKYALDQAWTDSVNRRAEQRKEKLESELNGYR [129] lcl|Ppa_FUS6_3_1_unnamed_protein_product ---------------MDGSENHGRGPTGATPEQIDVESYASLYSGHTKIARLHFIADHSNS-RNLELEALRMALDEIRKGENTVLFKECVEKINGRLGPGYGLDQEWIDTVERRAAQRQEKLEMELNGYR [114] lcl|Ppa_FUS6_1_1_unnamed_protein_product ---------------MDGWENQARRPTEATPEQFDVESYASLYTGHTKIARLHFIADHCNS-RNLDLEALRMALDEIRKGENTVLFKECVERLNGRLGLGYGLDQEWIDTVERRAAQRQEKLEVELNGYK [114] lcl|Smo_FUS6_2_2_unnamed_protein_product ----------MAMEGDGGGGDASGSAGVAAGDQVDLEAYAGLYSGRTKVTRLFFIADHAKS-HNLELEALRMAHNEIRRAENTLLYKEVVDKIGGRLGAAYARDQEWVDVVDRRAVQRQEKLDMELNGYK [119] lcl|Smo_FUS6_1_2_unnamed_protein_product ----------MAMEGDGGGGDASGSAGVAAGDQVDLEAYAGLYSGRTKVTRLFFIADHAKS-HNLELEALRMAHNEIRRAENTLLYKEVVDKIGGRLGAAYARDQEWVDVVDRRAVQRQEKLDMELNGYK [119] lcl|15065_Cre_unnamed_protein_product --------------MASSMEEDNQPVAAEAGSSFDLEAYIANYTGHAKVDRLLFIAERSSG-KPLELEALRMAHDELKKTENTARYQEVVARIDGRLGSAYTPDRAWVENTERRSAQKGERLESELQSFK [115] 'gi|76645477|ref|XP 603925.2| PREDICTED: similar to G protein pathway suppressor 1 isoform 1 [Bos taurus] >gi|76645473|ref|XP 87' -------MQID-VDPQEDPQNAPDVNYVVENPTLDLEQYAASYSGLMRIERLQFIADHC---PPLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYK [119] 'gi|67970136|dbj|BAE01412.1| unnamed protein product [Macaca fascicularis]' LQGAVEPMQID-VDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|20981690|sp|Q13098|CSN1 HUMAN COP9 signalosome complex subunit 1 (Signalosome subunit 1) (SGN1) (JAB1-containing signalosome' -------MQID-VDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYK [119] 'gi|47078238|ref|NP 997657.1| G protein pathway suppressor 1 isoform 1 [Homo sapiens] >gi|40352795|gb|AAH64503.1| G protein path' YEGAVEPMQID-VDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|7512468|pir||G01646 fusca protein homolog Gps1 - human' LQGAVEPMQID-VDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERQLFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|5670324|gb|AAC50906.2| Gps1 [Homo sapiens]' LQGAVEPMQID-VDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|47124897|gb|AAH70633.1| MGC81460 protein [Xenopus laevis] >gi|55976430|sp|Q6NRT5|CSN1 XENLA COP9 signalosome complex subunit' LQSAVEPMQID-ADPQDDQQNMPDVNYVVENPTLDLEQYASSYSGLMRIERLQFIADRC---PQLRVEALKMALSFVQRTFNVDVYEDIHRKLAEGSMEPPALDTSWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|75517042|gb|AAI03783.1| Gps1 protein [Mus musculus]' LQGAVEPMQID-VDPQEDPQNAPDVNYVVENPTLDLEQYAASYSGLMRIERLQFIADRC---PPLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|21703742|ref|NP 663345.1| G protein pathway suppressor 1 [Mus musculus] >gi|13097153|gb|AAH03350.1| G protein pathway suppre' -------MQID-VDPQEDPQNAPDVNYVVENPTLDLEQYAASYSGLMRIERLQFIADRC---PPLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYK [119] 'gi|55732991|emb|CAH93182.1| hypothetical protein [Pongo pygmaeus]' LQGAVEPMQID-VDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|62896575|dbj|BAD96228.1| G protein pathway suppressor 1 isoform 1 variant [Homo sapiens]' --GAVEPMQID-VDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYK [124] 'gi|47078240|ref|NP 004118.3| G protein pathway suppressor 1 isoform 2 [Homo sapiens] >gi|49113489|gb|AAH00155.3| G protein path' LQGAVEPMQID-VDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|32880011|gb|AAP88836.1| G protein pathway suppressor 1 [Homo sapiens] >gi|60654979|gb|AAX32053.1| G protein pathway suppress' -------MQID-VDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYK [119] 'gi|90077490|dbj|BAE88425.1| unnamed protein product [Macaca fascicularis]' LQGAVEPMQID-VDPQEDPQNAPDVNYVVENPSPDLEQYAASYSGLMRIERLQFIADHC---PTLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|72087249|ref|XP 787846.1| PREDICTED: similar to G protein pathway suppressor 1 isoform 1, partial [Strongylocentrotus purpur' GLGPAEPMQVD--MQGEGSDSQEELRYSVENPTLDVEAYAVSYMGLAKINRLLFVALHC---PAFKIESLRMALNYTQTTYNTHMYQLVHRKLTDVVHNIPSLDTQWIETTNKKAALKLEKLDTDLKNYK [125] 'gi|2494624|sp|P97834|CSN1 RAT COP9 signalosome complex subunit 1 (Signalosome subunit 1) (SGN1) (JAB1-containing signalosome su' -------MQID-VDPQEDPQNAPDVNYVVENPTLDLEQYAASYSGLMRIERLQFIADRC---PPLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYK [119] 'gi|51513284|gb|AAH80478.1| MGC89799 protein [Xenopus tropicalis] >gi|56118350|ref|NP 001007967.1| MGC89799 protein [Xenopus tro' LQSAVEPMQID-ADPQDDQQNVPDVSYVVENPTLDLEQYASSYSGLMRIERLQFIADRC---PQLRVEALKMALSFVQRTFNVDVYEDIHRKLTEGSMEPPPLDTTWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|26353512|dbj|BAC40386.1| unnamed protein product [Mus musculus]' -------MQID-VDPQEDPQNAPDVNYVVENPTLDLEQYAASYSGLMRIERLQFIADRC---PPLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYK [119] 'gi|57525252|ref|NP 001006206.1| G protein pathway suppressor 1 [Gallus gallus] >gi|53128375|emb|CAG31296.1| hypothetical protei' LQGAVEPMQID-VDPQEDQQNAPDINYVVENPTLDLEQYASSYSGLMRIERLQFIADHC---PQLRVEALKMALSFVQRTFNVDVYEEIHRKLSESGIEPPPLYTAWVEATRKKALLKLEKLDTDLKNYK [126] 'gi|68360416|ref|XP 685543.1| PREDICTED: similar to G protein pathway suppressor 1 isoform 2 isoform 1 [Danio rerio]' FQGSVEPMQID-ADPQEDQQNAPDTNYVVENPTLDLEQYASSYSGLMRIERLQFIADHC---PQLRVEALKMALSFVQRTFNVDVYEEIHRKLTEGAVEPPPLDTAWAESTRKKALLKLEKLDTDLKNYK [126] 'gi|68360422|ref|XP 686215.1| PREDICTED: similar to G protein pathway suppressor 1 isoform 2 isoform 1 [Danio rerio]' FQGSVEPMQID-ADPQEDQQNAPDTNYVVENPTLDLEQYASSYSGLMRIERLQFIADHC---PQLRVEALKMALSFVQRTFNVDVYEEIHRKLTEGAVEPPPLDTAWAESTRKKALLKLEKLDTDLKNYK [126] 'gi|66515478|ref|XP 392872.2| PREDICTED: similar to MGC81460 protein [Apis mellifera]' QQNVVEPMQVD--APAEDNDNAEEEPYIVENPTLDLEVYANSYTGLAKLYRLIYIADHC---PMLRIEALKMAISYVMTTYNVSLYVILHKKLVQTSQDMLTLDQAWVEFRSKKAALKLEKFDTDLKNYR [125] 'gi|76645475|ref|XP 887717.1| PREDICTED: similar to G protein pathway suppressor 1 isoform 3 [Bos taurus]' -------MQID-VDPQEDPQNAPDVNYVVENPTLDLEQYAASYSGLMRIERLQFIADHC---PPLRVEALKMALSFVQRTFNVDMYEEIHRKLSESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYK [119] 'gi|54641660|gb|EAL30410.1| GA17754-PA [Drosophila pseudoobscura]' MQNAIEPMQVD-APPNEDNENNEEQQIVVENPSIDLEVYANQYNGIVRLHRLMYVADVC---PVLAVEALKMAITYVQTTYNVNLYQLLHKRLSDGEKDSFAYDAVWVDTKMKKAALKLEKLDSDLKNYK [126] 'gi|24666528|ref|NP 524152.2| COP9 complex homolog subunit 1 b CG3889-PA [Drosophila melanogaster] >gi|15292255|gb|AAK93396.1| L' MQNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYANQYAGIVRLHRLIYVADVC---PVLAVEALKMAITYVQTTYNVNLYQVLHKRLSDVEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYK [127] 'gi|4732103|gb|AAD28605.1| COP9 signalosome subunit 1 CSN1 [Drosophila melanogaster]' MQNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVFANQYAGIVRLHRLIYVADVC---PVLAVEALKMAITYVQTTYNVNLYQVLHKRLSDVEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYK [127] 'gi|7799778|emb|CAB91509.1| FUSCA6 protein [Arabidopsis thaliana]' MERDEEASGPMMEMCTNGGEETSNRRPIISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDRRAEQKKVKLENELSSYR [130] 'gi|39585384|emb|CAE61706.1| Hypothetical protein CBG05655 [Caenorhabditis briggsae]' EKIPALLTRAEEKRD--KENFDEVYDLIVTEPAVDVETIGCNYDGNSFFLRARFIAKHC---TALKADAYIALINYLKETKDTTHYIAFFNELEQVNFQIPVKDTKWVDETSGSWQVALDHLQIEYKRHK [125] 'gi|17566048|ref|NP 507507.1| COP-9 SigNalosome subunit family member (csn-1) [Caenorhabditis elegans] >gi|11065650|emb|CAC14399' DN-PAIPMHLIEKRDDRRESCDDGYSLTVNESAIDIESLACSYDSNAFFLRARFIARHC---PILRADAYISLINYLKETTDITHYVAFFNELESLNFQIPLRDQKWIEENGATWQSTTDQLQAEYKRHK [126] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-17 60-62; END; BEGIN MacClade; Version 4.0 87; LastModified -1063539526; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '12' '714' '1' all; EditorPosition '46' '7' '969' 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