#NEXUS [MacClade 4.08 registered to Hirai, ERATO] BEGIN DATA; DIMENSIONS NTAX=61 NCHAR=1349; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|22327046|ref|NP 568461.2| DNA photolyase [Arabidopsis thaliana] >gi|20857182|gb|AAM26705.1| AT5g24850/F6A4 60 [Arabidopsis t' M---------------------------------------------------------------------------------------------------------------------------------------NDHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKG-VTILWFRNDLRVLDNDALYKA-WS--------------------------SS-DTILPVYCLDPRL-F---HTTHFF------------------------N--------F-PKTGALRGGFLMECLVDLRKNLMK--RGLNLLI-RSG------KPEEILPSLA------KDF-----GART----------VFAHKETCSEEVDVERLVNQGLK------RV--------------GNST--KLELI-WGSTMYHKDDLPFD----V-FD---------------------LPDVYTQFRKSVEA--KC-S---I-RSS---TRIPL--S--L-GPTPSVD------------DWGD-V----PT----LE--------KLGVEPQ------------------------------------------------------EVTRGMRFVGGESAGVGRVFEYFWK-KDL-------------LKVYKETRN--GMLGPDYSTKFSPWLAF----GCISPRFIYE-----------EVQRYEK------------ERVA-NN--STYW---------------VLFELIWRDYFRFLSIKCGNSLFHLGGPR----------N-VQGK----------------------WSQDQ-----------------KLFESWRDAKTG-----------------YPLIDANMKELSTTGFMSNRGRQI-------------------VCSFLVR-DMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV----------------GNDPR-EDRYFSIP---------------KQAQNYDPEGEYVAFWLQQLRR----------LPKEKRHWPGR---------------------LMYMDTVVPLKHGNGPMAGGSKS---------G-GGFRGSHSGRRSRHNGP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [526] 'gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]' ----------------------------------------------------------------------------------------------------------------------------------------NDHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKG-VTILWFRNDLRVLDNDALYKA-WS--------------------------SS-DTILPVYCLDPRL-F---HTTHFF------------------------N--------F-PKTGALRGGFLMECLVDLRKNLMK--RGLNLLI-RSG------KPEEILPSLA------KDF-----GART----------VFAHKETCSEEVDVERLVNQGLK------RV--------------GNST--KLELI-WGSTMYHKDDLPFD----V-FD---------------------LPDVYTQFRKSVEA--KC-S---I-RSS---TRIPL--S--L-GPTPSVD------------DWGD-V----PT----LE--------KLGVEPQ------------------------------------------------------EVTRGMRFVGGESAGVGRVFEYFWK-KDL-------------LKVYKETRN--GMLGPDYSTKFSPWLAF----GCISPRFIYE-----------EVQRYEK------------ERVA-NN--STYW---------------VLFELIWRDYFRFLSIKCGNSLFHLGGPR----------N-VQGK----------------------WSQDQ-----------------KLFESWRDAKTG-----------------YPLIDANMKELSTTGFMSNRGRQI-------------------VCSFLVR-DMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV----------------GNDPR-EDRYFSIP---------------KQAQNYDPEGEYVAFWLQQLRR----------LPKEKRHWPGR---------------------LMYMDTVVPLKHGNGPMAGGSKS---------G-GGFRGSHSGRRSRHNGP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [525] 'gi|77702596|gb|ABB01166.1| cryptochrome 3 [Lycopersicon esculentum]' M------------------------------------------------------------------------------------------------IKQPFLLTKFTPFSSKSKHTLFTFHCNFSIKMASLTARTTPTVQNVPGLTPEEMERVCEQTFQRYE--SGGLGKRKGKG-VAIVWFRNDLRVLDNEALLRA-WV--------------------------SS-EAILPVYCVDPRL-F---GTTHYF------------------------G--------M-PKTGALRAQFIIECLNDLKRNLVK--RGLDLLI-QHG------KPEDIVPSLA------KAY-----KAHT----------VYAHKETCSEEVKVEKMVTRNLQ------KLVSPSSGGIGNDPGSGNTT--KLELV-WGSTMYHIDDLPFD----C-ES---------------------LPDVYTQFRKSVEY--KS-K---V-RNC---TKLPT--S--F-GPPPEVG------------DWGH-V----PQ----VS--------ELGLQQE------------------------------------------------------KVSKGMNFVGGESAALGRVHDYFWK-KDL-------------LKVYKETRN--GMLGADYSTKFSPWLAS----GSLSPRFIDE-----------EVKRYEK------------ERLS-ND--STYW---------------VLFELIWRDYFGFLSIKLANLLFQAGGPQ----------K-VNIN----------------------WSQDQ-----------------TMFDAWRRGQTG-----------------YPLIDANMKELAATGYMSNRGRQI-------------------VCSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWIYGAGV----------------GNDPR-EDRYFSIP---------------KQAQNYDPEGEFVAYWLPELRA----------LPREKRHSPG----------------------MMYLNPIVALKHGYTKKTGDSKT---------A-FSSRRGRPEDNRRKRHGY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [577] 'gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa (japonica cultivar-group)] >gi|52077386|dbj|BAD46426.1| pu' M------------------------------------------------------------------------------------------LHFLSSSSPLNPQFLLLPRQSARLRVLLSIPVSAMSSSSSSSSRGALAAAAVPSLSADEAGAAADEAFLRYT--SPSMRRSGGGG-VAIVWFRNDLRVLDNEAVVRA-WA--------------------------AS-DAVLPVYCVDPRISA---GSTHYF------------------------G--------F-PKTGALRAQFLIECLEDLKRNLTK--QGLDLLI-RHG------KPEDILPSIA------KAV-----TAHT----------VYAHKETCSEELLVEHLVRKGLE------QVVIPQGGASNQKKPR--NP--KLQLI-WGATLYHVDDLPFS----V-NN---------------------LPDVYTQFRKAVES--KS-S---V-RNC---SKLPP--S--L-GPPPGSGLD-------EIGGWGT-V----PT----LE--------SLGLSMT------------------------------------------------------KAEKGMHFVGGESAALGRVHEYFWK-KDQ-------------LKVYKETRN--GMLGPDYSTKFSPWLAS----GSLSPRYICE-----------EVKRYEK------------QRIA-ND--STYW---------------VLFELIWRDYFRFISAKYGNSIFHLGGPR----------N-VESK----------------------WSQDQ-----------------ALFESWRDGRTG-----------------YPLIDANMKELLATGFMSNRGRQI-------------------VCSFLVR-DMGIDWRMGAEWFETCLLDYDPASNYGNWTYGAGV----------------GNDPR-EDRYFSIP---------------KQAKTYDPDGEYVAYWLPELRS----------IAKERRNFPG----------------------ASYIKQVVPLKFDGGHQKRDQQF---------N-RQRRPGHMYRRQK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [582] lcl|Ppa_cryD_1_1_unnamed_protein_product M---------------------------------------------------------------------LSTSVCQAIAICAPRSCLLSLSSLPLKTFVAQLRFTLLTSARIAVYGALWLDGGLRFRVGSFPDDEATKYLFECELNSWRVQKFAVTLTVSASGEKSKMTSRKGTG-IAIVWFRNDLRISDNEALLKA-WQ--------------------------SS-QAVVPLYVVDPRL-Y---GQTYHF------------------------G--------F-PKTGELRAQFIMESVANLRDNLRQ--RGLDLIV-RQG------KPEDVVPSIA------KSI-----GAHTVLFLYILYMQVYAHKETCSEETTVETGVKRGLANLEGGPKM----------------QI--RLDFV-WGGTLYHLDDLPFS----P-SE---------------------LPDVYTQFRKGVEY--NC-K---V-RPA---LKMPT--Q--M-GPLPESLSE-------KIGELGD-I----PT----MA--------ELGLKYR----------------------------------------------------EQSPLGVMHFEGGETAALARLQDYFWN-KDQ-------------LKIYKETRN--GMLGANYSTKFSPWLAH----GCLSPRTIHD-----------EVKRYET------------ERVA-ND--STYW---------------VLFELIWRDYFRFVSIKYGNAIFHLGGPR----------KVVGKR----------------------WSQNR-----------------ELFEAWREGRTG-----------------YPLIDANMKELAATGFMSNRGRQI-------------------VCSFLVR-DLGLDWRMGGEWFETCLLDYDPCSNYGNWTYGAGV----------------GNDPR-EDRYFSIP---------------KQSATYDPEGEYVAHWLPSLKQ----------SPPKQRNFPG----------------------DAYLRPIVPLKFGMGSGGKPNYS---------R-AGYKGKNVGKVGKR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [610] lcl|Smo_cryD_3_1_unnamed_protein_product MIPARRNVVVTTSRDNQRDALIVVYEGESKNARSNHLLGFFKLAGLPAAPKGVPLITVCVDVDASNVLRVMAGACLPKDCGGDGSGGVAALELREVRMPTVDDGHDCCCFKRGGTLLPSSDFSTFYAIGVGFRDSRLSAAAPKVSRRLVATRAMADAVESMIQRYSSAGSSRNGKG-VSIMWFRNDLRIVDNEALFKA-WA--------------------------SS-SSVLPVYCVDPRH-F---GTTHYF------------------------K--------F-PKTGELRAQFLLESLVDLKKNLKK--RGLDLVI-RSG------NPEFILPSLV------EAV-----GADT----------IYAQEETCSEELQVEKAVKKSIGT-----------------------KA--KLELV-WGTTMYHLNDLPFT----T-AR---------------------LPDVYTQFRKAVES--SS-R---V-RPC---LKLPQ--T--L-GPLPDSLGE-------KVGDLDK-V----PN----LS--------DLGLRPR----------------------------------------------------EQSSLAAMQFTGGETAAIQRLCEYFWT-KNC-------------LRNYKETRN--GMLGADYSTKFSPWLASAYHLALSTKRQVLSFQDACVKFSGFQVKRYEK------------ERTA-NN--STYW---------------VLFELIWRDYFRFLSMKYGNSIFHLEGPR----------KVRTKS----------------------WSQDK-----------------TLFEAWRTGTTG-----------------YPLIDANMRELYATGFMSNRGRQVWKTEEHNFLKESNKSTFQIVCSFLVR-DMGIDWRMGAEWFESCLLDYDPCSNYGNWTYGAGV----------------GNDPR-EDRYFSIPKQVFTLSIYILKNNGKQAQTYDPDGSYVSHWIPQLQE----------LPTDARHSPKKLIHKVYFDSRSFCASICGHRVIPGRS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [700] 'gi|71676441|ref|ZP 00674183.1| Deoxyribodipyrimidine photolyase [Trichodesmium erythraeum IMS101] >gi|71670686|gb|EAO27354.1| D' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQN-VIILWYRNDLRIHDHEPLYKA-LK--------------------------VN-AQIIPIYCLDPRQ-F---SQT-DF------------------------G--------F-PKTGVFRAKFLLESIADLRNNLQK--LGSNLVI-FQD------KPEIVIPRLA------QQL-----SAKS----------VFFHQEVTELEVKVERLVHQALK------QI----------------GV--RLKSF-WGHTLYHPDDLPFE----I-KQ---------------------LPELFTTFRKDVEK--NS-S---V-NPT---FSIPK--K--L-SSLP-KI------------DVGE-L----PT----LS--------DLNLEKP----------------------------------------------------PLNSQGVLEFKGGETAAKERVKNYFWQ-QDY-------------LKVYKETRN--GMLGANYSSKFSPWLAL----GCLSPRYIYE-----------EVKEYEY------------QRVK-NQ--STYW---------------LIFELIWRDYFRFICQKHGNKIFHKSGLQ----------G-IAIP----------------------WQEDW-----------------EKFRKWQAGQTG-----------------FPLVDANMRELLATGFMSNRGRQN-------------------VASFLTK-NLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGV----------------GNDGR-GFRYFNIP---------------KQAKDYDPEGKYVKHWLPELGK----------VPPAKVHEPWKLLPVEQDRFGVKIG-------VDYPEPIIDLWQSVKENEKKYNR---------A-LQMTLGKINKRGRF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [498] 'gi|67925725|ref|ZP 00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] >gi|67852431|gb|EAM47881.1| Deo' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNK-RILIWYRNDLRIHDHEPLYQA-IK--------------------------QG-ALIIPFYCFDIRQ-F---KTT-SF------------------------G--------F-PKTGNFRGQFLLESVTDLKKSLQD--LGSNLII-RQG------YPEKIIPELI------KQL-----EIDA----------VYFHEEVTSEETDIENTVEKALK------PL----------------NV--TFKGF-WGATLYHWDDLPFE----V-SK---------------------LPEVFTSFRKKVEK--NS-T---V-NPI---LISPR--K--L-RSLP-DI------------EVGN-V----PS----LE--------ELELEKP----------------------------------------------------KYDSRGVLEFKGGETEGIQRLNNYFWE-RNC-------------LKEYKETRN--GMLGADYSSKFSPWLAN----GCLSPRYIYE-----------EVQKYEE------------KRIK-NN--STYW---------------LIFELLWRDYFRFISAKHGNKIFYQSGLQ----------G-VDIP----------------------WKEDQ-----------------ERFKLWQEGNTG-----------------YPLVDGNMRELAATGFMSNRGRQN-------------------VASFLTK-NLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGV----------------GNDAR-GFRYFNIP---------------KQSKDYDPKGEYIKHWLPELKM----------IPGQKIHEPWKLSQEEQKRYNVRIG-------VNYPRPVVDFFKSVKANEKMYNA---------A-IK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [486] 'gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]' M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CVPSR-VIICLLRNDLRLHDNEVLHWA-HR--------------------------NA-DQIVPLYCFDPRH-Y---VGTHYF------------------------N--------F-PKTGPHRLKFLLESVRDLRITLKK--KGSNLLL-RRG------KPEEVIEDLV------KQL----GNVSA----------VTLHEEATKEETDVESAVKQACT------RL----------------GI--KYQTF-WGSTLYHREDLPFR---HI-SS---------------------LPDVYTQFRKAVET--QG-K---V-RPT---FQMPD--K--L-KPLPSGL------------EEGS-V----PS----HE--------DFDQQDP----------------------------------------------------LTDPRTAFPCSGGESQALQRLEHYFWE-TNL-------------VASYKDTRN--GLIGLDYSTKFAPWLAL----GCVSPRYIYE-----------QIGKYEK------------ERTA-NQ--STYW---------------VIFELLWRDYFRFVALKYGRRIFFLRGLQ----------D-KDIP----------------------WKRDP-----------------KLFDAWKEGRTG-----------------VPFVDANMRELAMTGFMSNRGRQN-------------------VASFLTK-DLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGI----------------GNDPR-ENRKFNMI---------------KQGLDYDSGGDYIRLWVPELQQ----------IKGGDAHTPWALSNASLAHANLSLG-------ETYPYPIVMAPEWSRHINQKPAG---------S-WEKSARRGKGPSHTPKQHKNRGIDFYFSRNKDV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [523] 'gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab] >gi|86605025|ref|YP 473788.1| deoxyrib' M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVLLWFRTDLRLLDHQPLTRA-CQ--------------------------QG-SFLIPLYCLDPRH-F---GRT-AF------------------------G--------F-PKTGPFRAQFLLESLADLRQQLRA--RGSDLVI-RQG------QPEQVIPALA------REW-----GVKA----------VYAHEEVGTEEEAVARALQQALQ------PL----------------GI--PLHLE-WGHTLYHPADLPFA----L-AD---------------------LPEVFTRFRQQVEA--KA-A---I-RAP---LPIPS-----L-PPLPPGL------------DPGP-L----PT----LA--------ELGLSLP----------------------------------------------------PPDPRARFVYAGGSTAAQARLQTYIWD-LDR-------------LRVYKETRN--GMLDPNDSSRLSAWLAL----GCLSPRTVYA-----------EVKRYEE------------ERVR-NE--STYW---------------LVFELLWRDYFRFILAKHGAKLFCPAGIQ----------G-IPIP----------------------WQQDG-----------------DRFQAWCRGETG-----------------YPLVDANMRELAATGFMSNRGRQN-------------------VASFLTK-NLGIDWRLGAEWFESLLIDYDVASNYGNWNYTAGV----------------GNDAR-GFRYFHIP---------------KQSRDYDPQGHYLRHWLPELAG----------IPGDKIHEPYRLSAAEQKQFGVRLG-------VDYPRPVVDLGKSLQASRRAYEA---------A-LARYRRG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [488] 'gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-2-3B''a(2-13)] >gi|86608285|ref|YP 477047.1| d' M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVLLWFRTDLRLLDHQPLTRA-CQ--------------------------QG-SPLIPLYCLDPRQ-F---GET-SL------------------------G--------LRPRTSPFRGQFLLESLADLRQQLRS--RGSDLVI-RQG------QPEQVIPTLA------QEW-----GVEA----------VYAHEEVGTEEKEVAAAVERALR------SL----------------GI--RLQVD-WGHTLYHPEDLPFC----L-SQ---------------------LPELFTRFRKQVEG--ST-P---I-RDP---LPIPS-----I-PPLPSGL------------DPGP-L----PT----LA--------SLGLSSP----------------------------------------------------ARDPRARFTYTGGSTAAHARLQTYFWD-LDR-------------LRIYKETRN--GMLDPDDSSRLSAWLAL----GCISPRTVYA-----------EVKRYEQ------------ERVR-NE--STYW---------------LVFELLWRDYFRFILAKHGAKLFRPSGIQ----------G-IPIP----------------------WQQDW-----------------PRFQAWCRGETG-----------------YPLVDANMRELAATGFMSNRGRQN-------------------VASFLTK-NLGIDWRMGAEWFESLLIDYDVASNYGNWNYTAGV----------------GNDAR-GFRYFHIP---------------KQSREYDPKGDYLRHWLPELAG----------IPGDKIHEPYRLTAAEQKQFGVRLG-------VDYPRPLVDLEKSLAANRRVYEA---------A-LACR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [486] 'gi|45387783|ref|NP 991249.1| Cryptochrome DASH [Danio rerio] >gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]' M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------SASR-TVICLLRNDLRLHDNEVFHWA-QR--------------------------NA-EHIIPLYCFDPRH-Y---QGTYHY------------------------N--------F-PKTGPFRLRFLLDSVKDLRALLKK--HGSTLLV-RQG------KPEDVVCELI------KQL----GSVST----------VAFHEEVASEEKSVEEKLKEICC------QN----------------KV--RVQTF-WGSTLYHRDDLPFS---HI-GG---------------------LPDVYTQFRKAVEA--QG-R---V-RPV---LSTPE--Q--V-KSPPSGL------------EEGP-I----PT----FD--------SLGQTEP----------------------------------------------------LDDCRSAFPCRGGETEALARLKHYFWD-TNA-------------VATYKETRN--GMIGVDFSTKFSPWLAL----GCISPRYIYE-----------QIKKYEV------------ERTA-NQ--STYW---------------VIFELLWRDYFKFVALKYGNRIFYMNGLQ----------D-KHVP----------------------WKTDM-----------------KMFDAWKEGRTG-----------------VPFVDANMRELALTGFMSNRGRQN-------------------VASFLTK-DLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGI----------------GNDPR-ENRKFNMI---------------KQGLDYDNNGDYVRQWVPELRG----------IKGGDVHTPWTLSNSALSHAQVSLN-------QTYPCPIITAPEWSRHVNNKSSG---------P---SSSKGRKGSSYTARQHKDRGIDFYFSKNKHF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [520] 'gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421] >gi|37520404|ref|NP 923781.1| probable bacterial cryptochrome' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------STK-TVLVWYRNDLRVHDHEPLTSA-LH--------------------------KN-ARVVALYCFDPRQ-F---GKA-PF------------------------G--------F-EKTGPFRARFLLESVADLRRSLRQ--LGSDLLV-RRG------HPEEVIPALV------SEL-----EIAA----------VHYHGEVTSEELVVERDLQAALA------PL----------------NV--PVRSF-WGTTLVHPDDLPFA----I-EA---------------------IPELFTDFRKQVER--SA-A---I-NPP---LPAPA--K--L-PPLP-AV------------DPGE-I----PQ----LA--------DLGLESP----------------------------------------------------VTDERAVLQFKGGETSGLARLEEYFWQ-KSL-------------LKSYKQTRN--GMLGADYSSKFSAWLAL----GCLSARYIHE-----------QVQTYET------------KRIK-ND--STYW---------------LIFELLWRDYFRFIAAKHGDRLFYTAGLR----------G-LDIP----------------------WKEDW-----------------ERFELWRTGQTG-----------------FPLVDANMRELAATGFMSNRGRQN-------------------VASFLTK-NLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGV----------------GNDAR-GFRFFNIL---------------KQARDYDPDGAYVKHWLPELAG----------LPPARVHEPWKLLPVEQKRFGVRLG-------VDYPQPVVDLFQSAAANEAIYNA---------A-WEHHHRKRRGQPRSRT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [500] 'gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]' M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------SASR-TVICLLRNDLRLHDNEVFHWA-QR--------------------------NA-EHIIPLYSFDPRH-Y---QGTYHY------------------------N--------F-PKTGPFRLRFLLDSVKDLRALLKK--HGSTLLV-RQG------KPEDVVFELI------KQL----GSVST----------VAFHEEVASEEKSVEEKLKEICC------QN----------------KV--RVQTF-WGSTLYHRDDLPFS---HI-GG---------------------LPDVYTQFRKAVEA--QG-R---V-RPV---LSTPE--Q--V-KSPPSGL------------EEGP-I----PT----FD--------SLGQTEP----------------------------------------------------LDDCRSAFPCRGGETEALARLKHYFWD-TNA-------------VATYKETRN--GMIGVDFSTKFSPWLAL----GCISPRYIYE-----------QIKKYEV------------ERTA-NQ--STYW---------------VIFELLWRDYFKFVALKYGNRIFYMNGLQ----------D-KHVP----------------------WNTDM-----------------KMFDAWKEGRTG-----------------VPFVDANMRELALTGFMSNRGRQN-------------------VASFLTK-DLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGI----------------GNDPR-ENRKFNMI---------------KQGLDYDNNGDYVRQWVPELRG----------IKGGDVHTPWTLSNSALSHAQVSLN-------QTYPCPIITAPEWSRHVNNKSSG---------P---SSSKGRKGSSYTARQHKDRGIDFYFSKNKHF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [520] 'gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1] >gi|32477278|ref|NP 870272.1| DNA photolyase [Rhodopir' M----------------------------------------------------------------------------------------------------------------------------------------RRDFQILVRTAQRVRRDQTKAFMAAGPRTSLTTDWHVMA-NALVWFRNDLRTIDHEPFLRA--S--------------------------TA-DRCFAVHCIDPRQ-F---ETT-EL------------------------G--------F-QRTGPFRARFLIENLTDLRSRLRS--LGGELIV-RVG------RPETVLQHLL------PSL-----AIDA----------VHFHHEPRTEEADTAESVQQLCD------QH----------------GI--ATHVA-YGDTLIHPDELPFE----I-AD---------------------TPELFTDFRKEIEK--QC-E---A-RSP---LEEPI--R--IHGTLPEEV------------NAGD-I----PT----LE--------SLGLSTP----------------------------------------------------PLDDRCLNQFTGGQNAAQQRMEEYIWN-EDR-------------LRVYKETRN--GMLHPNDSSKFSPWLAQ----GCLSPRMIAD-----------HVRRYEE------------ERVK-NK--STYW---------------MIFELLWRDYFRWISRKHGATLFRAGGLR----------G-VNVD----------------------WKSDR-----------------ELFRRWQDGTTG-----------------YPLVDANMRELRTTGYMSNRGRQN-------------------VASFLTK-NLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGV----------------GNDAR-GFRFFNIT---------------KQSRDYDSQGEYAKHWLPELRD----------LDVTEIHEPWKMSPERQQEVGATLG-------KEYPHPIVDLFDSAKENETIYMR---------A-KAASH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [526] 'gi|83814331|ref|YP 445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855] >gi|83755725|gb|ABC43838.1| deoxyr' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LS-TALVWIRNDLRVRDHAPLRYA-AD--------------------------HY-DQVIPVYCFDPRH-F---GTT-MF------------------------D--------L-PKMSSIRARFLRESVQDLRDSVQD--LGADLVV-RGG------RPEDILPELV------RQT-----GANE----------VLQFQEIGGEEEDVETAVEDALR------DT----------------GA--TPGFF-WGKTLYHIDDVPFD---GP-DD---------------------IPKVYTNFRKAVEK--KS-T---V-RPT---LDAPD--S--L-LPLPEDL------------NPGS-I----PT----LD--------ELGFDDD---------------------------------------------------GTVDERGVLPFRGGESRGHDRIDEYIWR-GDF-------------LKKYKATRN--GLLGANYSAKFSAWLAH----GCITPRQIHE-----------EVERYED------------QRVD-NK--STYW---------------MKFELIWRDFFSYVTWKAGERLFRPGGIN----------G-NDID----------------------WRYYD-----------------KSFERWAAGTTG-----------------IPFVDANMRELNRTGYMSNRGRQN-------------------VASMLSQ-SLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRV----------------GNDPR--ARYFNIV---------------KQAKRYDENGEYVRYWLPELAD----------VPDKYVHEPNRMSHEQQKKYGCVLG-------ADYPKPVVDLDKTYQRIRNERG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [483] 'gi|76802366|ref|YP 327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160] >gi|76558231|emb|CAI49819.1| de' M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D-TAVVWFRDDLRVTDNPTLADA-VA--------------------------AA-ETVIPVYTFDPDR-Y---TES-EY------------------------G--------P-PKTGGHRAVFRRQAVADLRASLRD--RGGDLLV-RSG------RPATVVPELA------QRA-----GADA----------VYAQTKPATEERRRAADVASALD------DA----------------GI--ALRQR-WTHTLYHPDDLPTP----P-TD---------------------IDDTFTPWRKETEA--AA-T---V-RDP---RSAPE--T--V--PTPDGL------------TPGP-V----PT----VE--------SLGVSEP----------------------------------------------------PTDDRAVLEFEGGESAGKRRVESYIWE-GDH-------------LREYKTTRN--GLLGADYSSKFSPWLAA----GCLSPRWLHR-----------EVERYED------------ERVA-NE--DTYW---------------LVFELAWRDFFQFQFEKYGATFFKPGGIR----------E-RNID----------------------WDRDR-----------------ALFERWADGETG-----------------VPFVDANMRELNRTGYMSNRGRQN-------------------VASFLAG-VLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGV----------------GNDSR--DRYFDVR---------------SQAERYDSDAEYITTWLPELAA----------LPATIAHQPWQLSEAEQREYGVELG-------VDYPEPVVDIDARYQSL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [474] lcl|2132_Cre_unnamed_protein_product M------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGGQ-RLVLWFRNDLRLHDNYIVHEA-AQRVKRG---------------------EA-SEVLPVYVYDPRF-F---AAT-PW------------------------G--------A-LKTGAHRAKFIQECVADLRQRLQG--LGSDLVV-AVG------QPEQLLPALL------EGG-----GAAPL---------VLTAEEVTSEEAAVDVAVARAIK------PA----------------GG--KLLRY-WGHTMYHYDDL----------D---------------------LPDVFTPFKEKVEK-----------RAA---LPLPP--APRL-GATAAAA------------LAAP-L----PG----WE--------QLPPAPP----------------------------------------------------VTHPKAVLDFKGGETAALARLKYYLWD-SDL-------------LSTYFDTRN--GMLGGDYSTKFAPWLAQ----GCISPRKIFH-----------EIRKYES------------QRFS-NK--STYW---------------VIFELIWRDFFRFFALKHGNRIFFETGTS----------G-LPLV----------------------WNPDP-----------------ELWARWREGRTG-----------------LPLVDANMRELAATGFMSNRGRQN-------------------VASYLVL-DLGVDWRRGADYFEEVLLDYDVTSNWGNWVAAAGL-----------------TGGR--VNHFNIA---------------KQSKDYDPTGEYVKTWCPELKN----------VPVTKVHEPWLMSKEEQERSGCRIG-------VDYPNPI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [469] 'gi|48854740|ref|ZP 00308901.1| COG0415: Deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii]' M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-RSIVWFKTDLRLHDNETLVRA-IE--------------------------QS-DEIIPVYCLDEDH-F---KIT-PF------------------------G--------F-QKTGNFRAQFLLESLNDLDTNLRK--LGSGLIV-VRG------KPETELYKIV------KQY-----EAFK----------VFAKREVAYEEQQTEARVEKEIW------KL----------------GC--TFESF-STSTLYHAQDLPFS----I-KD---------------------IPEVFTNFRKKVEK--ES-S---I-RSV---FQKPA--H--I-KSPAM--------------PQLR-L----PT----VK--------GLGLQPV----------------------------------------------------IQDPRAVMKFTGGESEGCKRLTSYLFE-TQL-------------ISHYKNTRD--GMIGSDYSTKFSPWLAL----GCLSPREIYT-----------ELKKYES------------RFSA-NE--STYW---------------LIFELLWRDYFRFMMKKHKHQFFLYSGIK----------DSANAS----------------------GLQDT-----------------AILSQWINGKTG-----------------NDFIDANMLELTHTGFMSNRGRQN-------------------AASYLCN-DLGIDWRYGAAYFEQQLIDYDVCSNWGNWAYLAGV----------------GNDPR-GKRNFNIE---------------KQAEEYDPKKLFRNLWLKTTLPL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [434] 'gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri]' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRT-RVVIWFRNDLRLLDNACVARA-ATLASES---------------------SD-VEVVPVYVFDETY-F---KPS-KR------------------------G--------L-ARFGAGRGKFTLECVGDLKTSLRA--LGSDLLV-RCG------KSRDVIAELT------LTG---ANDRTI----------ILTQTEVTSEETEMDVAVERATRERARGGAA----------------SA--TMERH-WGSTLYHIDDVPFDVTSGL-SD---------------------LPDVFTPFRNKVES--KC-K---V-RDV---IPAPT--ANEL-GHVPASV------------EGFEWM----PK----PS--------DLPFASS----------------------------------------EIAMDCDKRIKDCLDERSVLDFKGGESNALARVKYYLWE-SDR-------------LATYFETRN--GMLGGDYSTKLAPWLAL----GCVSPRHVVS-----------EIRRYES------------ERVE-NK--STYW---------------VIFELIWRDFFKFFALKHGNKIFHLDGTA----------G-RRAS----------------------WKRDE-----------------KILKAWKTGTTG-----------------YPLIDANMRELAATGFMSNRGRQN-------------------VASWLAL-DAGIDWRHGADWFEHHLLDYDTASNWGNWCAAAGM-----------------TGGR--INRFNIA---------------KQTKDYDPAGEYIKTWVKELAE----------VPAAYIADPNQAPRELRDRIG-----------LNYPNKLALPRRDFTEMGSPPGP---------R-RGGGGGGRG-RGRPGGSTPNRGTKARVASVYDTVYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [546] 'gi|89890451|ref|ZP 01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7] >gi|89517366|gb|EAS20023.1| de' M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNLVWFRNDLRVTDNHSLKKA-CD--------------------------ND-GKVIGIYCFDPIF-Y---QNS-NF------------------------GLDIDLELPF-GKTGKFRAQFIIEAIEDLRKQLDK--HGIPLLV-YHD------SPVNVFPDII------KEY-----DITN----------IYLQKEWTRDEVEQENLLGTALK------LL----------------EVKPKGHRT-YDQFLYHPHDVPYS---NF-QE---------------------IPTVFTQFRKKCEK--ES-H---I-RTL---VDIKD-----Y-QQELPSV------------VSTT-I----PQ----LE--------DLGLESF----------------------------------------------------EKDHRSAFPWKGGAIAAWERLNHYFWD-TGK-------------LQYYKKTRN--GLVGIDYSSKLSTWLAI----GCISAREIYW-----------EVQRFEK------------EVKK-NQ--DTYW---------------LIFELIWRDFFKYVSLKNGNDIFKLGGIL----------H-KEYE----------------------WKSSE-----------------RELSKWINGETH-----------------ERFVNANMKELAATGWMSNRGRQN-------------------VASYWSM-HKEQDWRIGAAYFEHILIDYDVHSNYGNWMYNSGV----------------GNDPR--NRTFNIE---------------LQASRYDSDGTYQRMWLQEELF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [442] gnl|CMER|CMJ130C_probable_cryptochrome_DASH M-----------------------------------------------------YVVLPAHSGTRQLQRGLRPALHPISDGVGVR--------------------ATRQRASRRHRTPLVAVQWEWFGWDLDGRFEPDLTDITPKPEKVLPNTGTTYADSLVFPTDSKRWPDSLPG-TALLWFRNDLRLHDNEALRLA-N---------------------------RA-ESLLCVYVFDERY-F---FGKSRF-----------------------GG--------F-LRIGEHRAYFLRECIVDLRQALRS--RGQELIV-EIG------SPVDVIPRLV------QKF-----GVQH----------LIFSKEVTEEEIATENALVRTLAQVAAQGQI----------------SAPVQCHAV-WNATLVHIEDLPYPFPGKA-KDISRRAESPVPKTRGTPAVDRVFPDTFTTFRRLVER--SW-T---V-RET---WQCPE--V--L-TLLPDDASNFN-----TIDWSGA-LPIEYPA----EATRIGAEPPKLLLMRP----------------------------------------------------YPDPRACYDFHGGETVALSRLEDWIWE-TQS-------------LASYKETRN--GLEGPDYSSKFSCFLAH----GCISPRLIYN-----------AVRDFER------------RVES-NE--STYW---------------LLFELLWRDFFRFTAVHHGNAIFKRRGLR----------G-VRGA----------------------SKTSQSGARSAVVRQREDVSPDARLTAWCQGRTG-----------------VPFIDAAMRELRLTGFMSNRARQV-------------------VASFLIN-DLGLDWRLGAEWFESQLLDYDPCSNWGNWCYLAGV----------------GNDPRSGSRYFHPL---------------KQAYEFDPRATFTKRWCPELFW----------VDNALIQTPWKWNRKMQEAFRVTLG-------DQYPEPIVTLREPGRARTPPKVS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSTPVDTDAAVHHES------------------------------------------------------ [669] 'gi|88802284|ref|ZP 01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P] >gi|88781142|gb|EAR12320.1| probabl' M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKKQEN-TGVIWFRNNLRVQDNQSLTKA-IE--------------------------NH-SKVIAVYFFDPKL-F---KID-SF------------------------G--------F-QKTASFRTKFLIETITDLKKNLAA--LNITLLT-YME------SPENKMHTLC------DEF-----SVGT----------IYTQKEWTREEIATDNFIKSTLP------E-----------------TV--RFVAD-YDQFLYHPDAVSRD----F-SK---------------------IPDVFTIFRKKVEK--TV-A---V-EKE---CTVTK-----L-SERNLIE------------TETA-I----PS----ME--------SLGFSDT----------------------------------------------------KTHAKTAFPFKGGETAALERLQYYFFE-SKK-------------VSFYKNTRN--GLVGTDYSTKFSPWLAN----GSLSAKTIYW-----------KIKEYEA------------EFGS-NQ--STYW---------------VIFELIWRDYFKYISLKYNAKVFRIGGIL----------E-KTYE----------------------WNTDQ-----------------KTVQQWINGETK-----------------DAFVNANMIELKETGFMSNRGRQN-------------------VASYFAK-DLLLDWRIGAAYFESVLLDYDVHSNYGNWMYVAGV----------------GNDPR--DRKFNTK---------------MQADRYDQNHKYRKLWLEKTLF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [436] 'gi|86140426|ref|ZP 01058985.1| probable bacterial cryptochrome [Flavobacterium sp. MED217] >gi|85832368|gb|EAQ50817.1| probable' M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNLVWFRNDLRVKDNTSLFKA-SK--------------------------NA-NLLAAVYCFDPRQ-F---QED-QF------------------------G--------F-KKTERFRAQFLIETVTELREHLAE--LNIPIFV-YNE------QPEDILPQLI------ERL-----QIDQ----------LFFQEEWTSEEQEVTRKVKESCS------A-----------------SV--KFTES-YDQFLIHPEDLPYK---SI-EA---------------------IPNVFTQWRKKCEK--NL-N---I-RKE---VSITE-----F-PQTNFEE------------NSTS-I----PT----LQ--------DLNLESF----------------------------------------------------TPDHRSAFPFKGGEQQALNRIEDYFWQ-TRK-------------LAVYKKTRN--GLTGKNYSSKLSAWLAN----GGISARTIYW-----------KIKAFEQ------------EETK-NE--STYW---------------LFFELMWRDFFKYISLKYGDQIFKIGGIL----------E-KDYD----------------------WKTNK-----------------AAKKEWINGQTK-----------------YDFVNANMKEIAATGWMSNRGRQN-------------------VASYWAK-ELQQDWRIGAAYFESMLIDYDVHSNYGNWMYNSGV----------------GNDPR--DRKFNIK---------------SQAERYDGDGKFRRLWLQESLFD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [432] 'gi|86131286|ref|ZP 01049885.1| probable bacterial cryptochrome [Cellulophaga sp. MED134] >gi|85818697|gb|EAQ39857.1| probable b' M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D-TALVWFRNNLRVQDNASLTAA-IA--------------------------TG-KRVVGVYYFDPRH-Y---EEG-DF------------------------G--------F-KKTEKYRAKFLIETIENLKANLDK--RNITLLV-YNL------KPEEHITSVV------KSY-----KVTS----------LHSQKEWTAEEVKVTNAVERAIP------------------------EV--SHELV-YDQFLFHPDDIPFN---TI-TE---------------------VPKIFTQFRKKCEK--ES-D---V-RPI---FKELT--A--L-PQENILT------------TVTP-I----ST----LE--------DLGLDTF----------------------------------------------------VKDHRTAFPWEGGEDAAWARLNDYFWT-TQK-------------LAYYKKTRN--GLIGEGYSSKLSAWLAN----GSISARQIYW-----------KVKRFEK------------EVKK-NQ--DTYW---------------LIFELIWRDYFKYVSLKHGDNIFKIGGIL----------N-KEYD----------------------WKHNN-----------------KAQREWINGNTK-----------------YDFVNANMIELKETGWMSNRGRQN-------------------VASFWAK-EQEQDWRVGAAYFESILIDYDVHSNWGNWMYNAGV----------------GNDPR--DRKFNIK---------------RQQDMYDGSGKYVRLWTQEELF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [432] gnl|CMER|CMA044C_cryptochrome_DASH M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-WGLVWFRNDLRVRDHEALLTACLE--------------------------HA-GRIIPVYVFDKRQ-VGPHART-RL-----------------------GQ--------F-SKCSTPRAQFLVEAVQDLANTLRTHYRGMQLLVYKNA------LPENVIPKLIAELSTEKQV-----HVGA----------VYYHREVCSEERAVEDALRAALCALNQRGELP---------------AV--TLRALDGSSTLYHADDLPSG--ASV-GN---------------------MPPVFTSWRKLVEK--GA-R---I-RAP---LPMPDPAK--V-QPLPLSL------------GCDP-I----PT----CA--------REVIGDNCEQ-------------------------------ARLRHRVPWTLPDDATSRV-DPRHACPFRGGESAAQERVQAYTFG-TDA-------------IARYKATRN--GLLGTEYSTKWSPYLAL----GNVTPRQLYA-----------VLRRYET------------ERPE-KKGISTYW---------------VLFELEWRDFFRFTAMRYGNALFWRRGLQAVLRGDPQVAG-PSKT----------------------WRQDA-----------------VLLDRWQTGMTG-----------------FPLVDANQRELLATGWMSNRGRQN-------------------VASFLTK-DLEIDWRLGAEWFESLLLDYDACSNYGNWQYAAGV----------------GLDPR-ADRHFDVI---------------RQARMYDPEGHYMRRWLPELESC------TDWSQVLHLHEHY----------------------PEYPAPVVRHLHGGRKNLDDAAN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APKCSVRGTKSGSRGRRQTKQTGKPHREPGWMRQAHTGAVDILDNRDGSAALEQNRQTVLDAYLRSQKR [598] 'gi|86134106|ref|ZP 01052688.1| deoxyribodipyrimidine photolyase [Tenacibaculum sp. MED152] >gi|85820969|gb|EAQ42116.1| deoxyrib' M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKKQNT-TGLIWFRNNLRTQDNTSIQKA-IQ--------------------------NH-DKVIAIYFFDPKY-F---KED-EF------------------------G--------F-QKTAKFRAQFLLETITDLKQQLKD--LNITLLT-YFD------APENQLLNIT------ETY-----KVDT----------IYTQKEWTKEELDTNKLVLKTMS------D-----------------TV--NFVED-YDQFLYHPETVSNN----F-SN---------------------IPNVFTQFRKKLEK--YV-K---I-QEE---ILIDK-----H-DDSNLIH------------NPTE-I----PS----LK--------ELGFNDF----------------------------------------------------VMPKKSAFPFKGGETAALERLNYYLFE-SKK-------------VGFYKKTRN--GLVGTDYSTKFSPWLAN----GSLSARTIYY-----------QIKKYEA------------EFGS-NQ--STYW---------------VIFELIWRDYFKYISLKYGYEIFKIGGIL----------E-RNYQ----------------------WNVDK-----------------NCIQDWINGNTK-----------------DDFVNANMIELKETGWMSNRGRQN-------------------VASYFAK-ELLQDWRIGAAYFESLLLDYDVHSNYGNWMYVAGV----------------GNDPR--DRKFNTQ---------------LQAERYDANHKFRKLWLEKTLF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [436] 'gi|88806744|ref|ZP 01122260.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501] >gi|88783078|gb|EAR14251.1|' M-----------------------------------------------------------------------------------------------------------------------------------AAQLGVCQVLQQPLPQPPGSGGYRLGSNPARPEGWQAKNGETMT-TALYWFRNDLRVTDNPGLLAA-C---------------------------SS-QRVLTVFCFDPAD-F---REG-DY------------------------G--------I-RRMGPYRAGFLRESVLALREQLQG--LNISLHI-HFG------PPGDILPGMI------KKY-----GVTD----------LHLQREWTRDECLALDAVREGLP------P-----------------GV--TVHEH-YQQFLFHPEDLPYD---SF-DD---------------------IPDVFTGFRKKCEK--HV-S---V-RSP---EDTPA--R--R-EAVFAPA------------GDGG-L----PG----WE--------ALGMAPP----------------------------------------------------RADSRSAFPFRGGEPAAWDRLQEYFWE-SRF-------------LSTYKRTRN--GLVGTRYSTKFSPWLAN----GSLSARQIYR-----------EVKRYEQ------------EVEK-NR--DTYW---------------LVFELIWRDYFKYVSLKHGPKIFAPGGIR----------E-VERD----------------------WGASR-----------------EAFARWTQGETD-----------------SDFINANMQELRLTGWMSNRGRQN-------------------TASYWSQ-DMGQDWRLGAAWFQYLLLDYDVHSNWGNWMYNSAV----------------GNDPR--NRKFNPE---------------HQASRYDASGKFRRLWLQGTLFDAAPEAPTAIA------TPGELSAPGGEGTQPDDAPSQPSKPENTP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [515] 'gi|76792315|ref|ZP 00774816.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c] >gi|76592510|gb|EAO68699.1| D' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------KKLSSALPK-RGIFWFRHDLRLHDNPALVAL-SE--------------------------QV-DELLCVFIIDPRW-F---KSS-HF------------------------Q--------S-AHMGDKRWAFLQQSLSELQRHLQE--QGQQLFV-LEG------ETLEVLDALI------GSY-----TPDI----------VASGMHPGVYERQQWQRVKQGNP------------------------NT--LFIQE-NGHSLFQPATLPFE----I-EY---------------------LPASFTPFRKRVED--LQ-----V-AVA---LPAPT--A--L-PPAPDLA-----------------W----LS----SK--------NVN--------------------------------------------------------PPKKAIGLAFTGGEDAALAQLEYTLFT-SHN-------------IKNYKQTRN--GLDGWDYSSKLSPWLAN----GCLSVRQVFT-----------ELRRYES------------EYEK-ND--STYW---------------LYFELLWREYFQWHLFKYQSKLFQFSGTQ----------D-TRPL----------------------TTFVA-----------------LRFAMWCQGETP-----------------YPIVNACMKQLNHTGYMSNRGRQL-------------------VASCLVN-ELGVDWRFGAAYFEQQLVDFDVASNWGNWQYLSGV----------------GVDPR-GHRRFDLA---------------KQAQQYDPNGEFVRQWAGDTYVS-------GIDQTDAADWPLG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [445] 'gi|75815546|ref|ZP 00746049.1| COG0415: Deoxyribodipyrimidine photolyase [Vibrio cholerae V52]' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKK-IGLYWFTNDLRVNDNTLLEQA-SQ--------------------------QV-DRLICLYCYPSIT-P---FLA-RY-----------------------AQ--------Q-TQWGEAKKRFLNQTLADLNHSLST--LGQKLWV-TPL------LPYQALRHLL------TQV-----EITD----------IYVDAVVGSDERQAIARIHQDFP------------------------SV--LIHQQ-ALHSLLSEPQLPFA----L-EA---------------------LPSTFTQFRKQVET--LS-----LSSAP---IGYPR--V--L-PPIEQGWQ----------------L----PL----LD-------------------------------------------------------------------IVAEPNHSAFIGGEQAGLTHCQNY-FS-SML-------------PSCYKETRN--GLDGMDYSTKFSPWLAL----GAVSPKTIYA-----------MLQRYEA------------VHGA-ND--STYW---------------IFFELLWREYFYWYARRYGAKLFRFSGIG----------E-KKPL----------------------TSFYA-----------------QRFLQWKHGVTP-----------------FPIVNACMRQLNQTGYMSNRGRQL-------------------VASCLVH-ELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGV----------------GADPR-GSRQFNLE---------------KQAHTYDPKGEFVAKWCGTACDMLNALENLALDSVDMVDWPIAARAPLLIHHPQNKESSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [462] 'gi|75820840|ref|ZP 00750879.1| COG0415: Deoxyribodipyrimidine photolyase [Vibrio cholerae V51]' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKK-IGLYWFTNDLRVNDNPLLEQA-SQ--------------------------QV-DRLICLYCYPSIT-P---FLA-RY-----------------------AQ--------Q-TQWGEAKKRFLNQTLADLDHSLST--LGQKLWV-TPL------LPYQALRHLL------TQV-----EITD----------IYVDAMAGSDERQAIARIHQDFS------------------------SV--HIHQQ-ALHSLLSEPQLPFA----L-EA---------------------LPSTFTQFRKQVET--LS-----L-SAP---MGYPR--V--L-PPIEQGWQ----------------L----PL----MD-------------------------------------------------------------------IVTEPNHSAFIGGEQAGLTHCQHY-FS-SML-------------PSCYKETRN--GLDGMDYSTKFSPWLAL----GAVSPKTIYA-----------MLQRYEA------------VHGA-ND--STYW---------------IFFELLWREYFYWYARRYGAKLFRFSGIG----------E-KKPL----------------------TSFYA-----------------QRFLQWKHGETP-----------------FPIVNACMRQLNQTGYMSNRGRQL-------------------VASCLVH-ELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGV----------------GADPR-GSRQFNLA---------------KQAHTYDPKGEFVAKWCGTDCGKLNALENLTLDSVDMVDWPIAASASLFIHHPKNKESSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [461] 'gi|71005224|ref|XP 757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521] >gi|46096457|gb|EAK81690.1| hypothetical prot' M-----------------------------------------------------------------------------------------------------------------------------------------------------EGSSSSDSPSASHDGTSTLDSELGRS-VLICLLRLDLRIHDNPLFYYA-HQTHKPIVTTAEKTVDLSKLEDEALLGSTA-DYLLPVFVFDERE-V---ELS-GLP---------GYQRKGPEARTKEYG--------F-WKTGGFRTRFVSESVYDVRSRLRS--VGSDLFI-RFG------IPEDVISNLV------KAFQAEGTHVEG----------VWLQKEMTYPEINVENAIVEKLR------GS----------------GV--PVQFV-NGKTLIHPADLPFE----S-SE---------------------TPDVFTPFRKKVEALGAS-M---V-RPV---KHPPA--K--F-KSFPPGV----------------------PS----TPDYALDVSYEVDVDGLAPRALETKDKQEGQVSFHDILRFLLTPLNDSQLPPTLEASALL--------QQRHPASAFPLRGGESSALERLDWYFVR-GKSADSSRWGKSDPPPVARYKQTRN--NLIGHAYSTKMSPFLAY----GSVSPRQIWE-----------ALDDHER------------KFGE-DQ--NTYW---------------VRFELLWRDYFFFVAEKFGHLLYDLGGFE----------R-ATDPRQAAKKMEDGW-----------WRKWD----------PLKDGPDHEMTRLLEGRTG-----------------IPFIDANILELRESGFMSNRGRQN-------------------VASFLSK-DLGYDWRIGAEFFQSHLIDYDPTSNYGNWQYVAGV----------------GNDPR-ASRQFNTV---------------KQAKDYDSHGDYVKLWIPALRN----------LHADYVHTPWLLTADERRRYGLKTTKMDVTIDGYPAQPLFEHEGWQRHYERKQGV---------G-SKMHGNPQE-KVKDGKVPRRHRPSCRVQAATYGALSDGSSFDQLSATTGTLHGLDGSGTPRNMVPPLRGASGSIGPSHHARPNSSFPNLGALSIGSASERSGSPFGTSPAGHLSAINKFARTAPSGAPVNLAAPVGRAPGNAFDFGPGRTGSASSLELLNNRARRAGTTDGNGGNGGDAYSGAPNSADVVSHIGPANNSNGLGYGNGNGNGNGNGNSNSNAHASQTVSKADLETSWRRGFK [881] 'gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar eltor str. N16961] >gi|15641816|ref|NP 23' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKK-IGLYWFTNDLRVNDNPLLEQA-SQ--------------------------QV-DRLICLYCYPSIT-P---FLA-RY-----------------------AQ--------Q-TQWGEAKKRFLNQTLADLDHSLST--LGQKLWV-TPL------LPYQALRHLL------TQV-----EITD----------IYVDAVAGSDERQAIARIHQDFS------------------------SV--HIHQQ-ALHSLLSEPQLPFA----L-EA---------------------LPSTFTQFRKQVET--IS-----L-SAP---MGYPH--V--L-PPIEQGWQ----------------L----PL----MD-------------------------------------------------------------------IVTEPNHSAFVGGEQAGLTHCQNY-FS-SLL-------------PSRYKETRN--GLDGMDYSTKFSPWLAL----GAVSPKTIYA-----------MLQRYEA------------VHGA-ND--STYW---------------IFFELLWREYFYWYARRYGAKLFRFSGIG----------E-KKPL----------------------TSFYA-----------------QRFLQWKHGETP-----------------FPIVNACMRQLNQTGYMSNRGRQL-------------------VASCLVH-ELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGV----------------GADPR-GSRQFNLE---------------KQAHTYDPKGEFVAKWCGTACDKLNALENLALDSVDMVDWPIAASAYLLIHHPQNKESSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [461] 'gi|75823642|ref|ZP 00753130.1| COG0415: Deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKK-IGLYWFTNDLRVNDNPLLEQA-SQ--------------------------QV-DRLICLYCYPSIT-P---FLA-RY-----------------------AQ--------Q-TQWGEAKKRFLNQTLADLDHSLST--LGQKLWV-TPL------FPYQALRHLL------TQV-----EITD----------IYVDAMAGSDERQAIARIHQDFS------------------------SV--HIHQQ-ALHSLLSEPQLPFA----L-EA---------------------LPSTFTQFRKQVET--LS-----LSSAP---IGYPR--V--L-PPIEQGWQ----------------L----PL----MD-------------------------------------------------------------------IVTEPNHSAFVGGEQAGLTHCQNY-FS-SML-------------PSRYKETRN--GLDGMDYSTKFSPWLAL----GAVSPKTIYT-----------MLQRYEA------------VHGA-ND--STYW---------------IFFELLWREYFYWYARRYGAKLFRFSGIG----------E-KKPL----------------------TSFYA-----------------QRFLQWKHGVTP-----------------FPIVNACMRQLNQTGYMSNRGRQL-------------------VASCLVH-ELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGV----------------GADPR-GSRQFNLA---------------KQAHTYDPKGEFVAKWCGTACDMLNALENLTLDSVDMVDWPIAASASHLIHHPHNKESSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [462] 'gi|77868607|gb|EAO99875.1| deoxyribodipyrimidine photolyase [Marinobacter aquaeolei VT8] >gi|77952474|ref|ZP 00816889.1| deoxyr' M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTLYWFTRDLRLHDNPALLAA-A---------------------------RS-DMLLCVFVVDPRW-F---TGD-RF------------------------Q--------C-RALGDHRWRFLWQSLMALERSLRP--MGQRLHI-AWG------EPEVVLPELA------REH-----GVQR----------LIRSRLPGTEEAAQWQALKTRLP------------------------EV--TFQQF-ETLGMFAEGQLPME----L-AE---------------------LPDTFSQFRKQVEK--AEQP---DHTLR---IRTVS--A--L-PPPPGFPEDNRGQ-----------C----PP----IP---------------------------------------------------------------------EPIHRSPFTGGEEAGLAQLQAFVFG-QHR-------------IANYKETRN--ALDDWGSSSKFSPWLAN----GCLSAREVVA-----------AIEQYER------------QHTR-ND--STYW---------------LWFELLWREYFYWYALKHGGRLFSRDGVQ----------R-KRRP----------------------VTFYG-----------------HRFKAWCEGNTQ-----------------YPIVNAAMNQLRETGYISNRARQL-------------------VASCLIN-ELELDWRYGAAWFEQQLVDYDVASNYGNWQYLAGV----------------GADPR-GLRQFNLD---------------KQAQQYDPEEAFVHRWQGEAQQP------VGLHTVDAADWPIS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [440] 'gi|89075135|ref|ZP 01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34] >gi|89049089|gb|EAR54655.1| deoxyrib' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AV-KALYWFTNDLRLHDNPILHQA-YE--------------------------HC-DSLLCVYFMEPKK-Q---QFN-RY------------------------Q--------L-ISVGEIRHRFLLQALQALQSNLAT--LGQRLLV-MQA------DPMVSMPVLI------EQY-----GINL----------IYRSRHCGWYEQQQWCYLKQCYP------------------------HL--RFVEV-DTHTLYSQDQLPFP----L-LD---------------------MPKSYSKFRKQIEQ--NV-T---V-SSP---ILVPD--Y--L-PPQPNVF-----------------C----SE----YL--------DIR---H-------------------------------------------V--------HISDNDQVEWHGGENAALMHLQQY-FS-SRL-------------PSSYKETRN--AIEGWNNSTKFSPWLAC----GAISAKMIMA-----------RLQDYEK------------YKEK-NS--STYW---------------IFFELLWREFFQWHAHAVGRDLYRFSGVQ----------N-KRLL----------------------NSFYP-----------------TRFKQWCEGSTP-----------------YPIVNAFMKQLNQTGYMSNRGRQI-------------------VASCLVN-ELSVDWRYGAAYFEQQLIDHDVAANWGNWQYIAGV----------------GTDSR-EKRWFDLE---------------KQTRIFDPNHHFIRHWRGDENLN-------ALDSVNIDDWPLSGR----------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [443] 'gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD 2210633] >gi|28900058|ref|NP 799713.' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKK-IGLYWFTFDLRLHDNSLLVDA-SS--------------------------FL-DELVCLYCRPSVT-P---FLH-HF-----------------------AQ--------E-VTLGRARQKFIDASLCELNDALGQ--LGQRLWT-LDL------PPYQALKYAI------QYL-----SVTH----------LYSDAMAGSDEQSILHKLQDEYP------------------------HL--VIVQH-SVRSLFDESKLPFT----L-PD---------------------LPETFTQFRKCVEG--ID-----I-AHP---IDAPS--R--L-PPMPKGAQ----------------L----PT----LS-------------------------------------------------------------------SFYFDESALFSGGEWSGLAHCRRY-FF-SGL-------------ASSYKETRN--GLDGMAYSTKFSPWLAL----GCVSPRMIHA-----------MLKQYEQ------------TQGA-ND--STYW---------------IYFELLWREYFYWYARCYQQRLFRFGGIR----------N-QPPL----------------------TSFYA-----------------HRFQQWKNGTTP-----------------YPIVNACMHQLNHTGYMSNRGRQL-------------------VASCLVH-ELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGV----------------GADPR-GSRQFNLE---------------KQTQMYDPNHEFIERWQGRDSRA-------QQDVVDMVGWPITTQQENGDK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [445] 'gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR] >gi|56459233|ref|YP 154514.1| Deoxyrib' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------NTKQQLVFIMADYR-LGLFVFRNDLRVEDNLALYEA-AQ--------------------------RS-ETLICCFCFNPTQ-N---KYG-HY------------------------G--------I-PAMGKHRFTFLQQSLKQLRTELEM--RGQKLIV-LTG------TFDRILTELI------SER-----QVDA----------IFLSQHQGYYERLQLGLLQQRFP------------------------FL--PFHET-PNNTLFSEQELPFE----L-AD---------------------LPETFSQFRKKVEP--LS-----R-NFS---VQPVN--A--L-PSLPKNIS----------------Y----PG----FK--------AETL---------------------------------------------------------NELASDDFEGGERAALTHLTSY-FS-GES-------------AGTYKQTRN--ALDDFSSSTKFSPWLAQ----GCLSVRQIMA-----------ALRAYET------------EFGE-NE--SSYW---------------ISFELLWREYFFWYALKHGKRLFAFSGLS----------G-KSPK----------------------TSFYS-----------------ERFQKWCSGNTP-----------------YPIVNACMKQLNATGYMSNRGRQL-------------------VASCFVH-ELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGV----------------GADPR-GHRQFNLE---------------KQTERYDPDNEFIERWAGDLSGQ-------PIDSVDAADWPVR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [449] 'gi|71023669|ref|XP 762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521] >gi|46101498|gb|EAK86731.1| hypothetical prot' M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRN-ILIALLRNDLRLHDHPILHVC-SEPTPSTANFT-----------------QPITHVLPVYVFDQRH-V---EVS-GFPRLEKARKDGGGKGSGEYAKTRELG--------L-WRTGIHRIKFINESVFDLRDRLRR--LGSDLAM-FAG------TPESVIASLI------HQIRAHGDTVEA----------VYLSREINTEEVNIQKRLQRMLS------DV----------------QC--RMHMF-ETKSLIHSRDLGFP----V-SK---------------------LPDVFTHFRKQVER--NR-I---W-RAP---LASPD--R--L-KPFAEVPVEDAAGVYSLSANKQHGLDRKNAVEKCLLQ--------------------------------------------PLLDNPVLAHNELLARVMCKRGQVDVAHSAFPYRGGETEALARLDHYFDR-SDSCP-----------AASYKQTRN--QMLGTDYSTKFGAALAL----GLLSPRLIAQ-----------KATELDNATHDA-------THNA-SNKGGGYW---------------IIFELLWRDYFYFVGWKFGSKLFSLRGIEDDISARSAP-S-KASE----------------------WKSSA-----------SLSDRDDGFVRWCTAQTG-----------------VPLIDANMVEMVQTGFMSNRGRQN-------------------VASFLTK-DLGWNWRHGAEFFESWLVDYEPNSNWGNWQYVAGV----------------GNDPR-SSRQFNPI---------------KQGNDYDANGEYVATWLPLLSD----------MPPQYRHHPWTCPDAAWAEQAHSA--------HYPPTPIVEQQMWRKHYSNPEGA---------P-PAHHKPDHVATGRRSANANANRRGARRRSRSTRASTQQS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [623] 'gi|85711299|ref|ZP 01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145] >gi|85694800|gb|EAQ32739.1| Deoxyrib' M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAKHQ-TGLVWFNLDLRLIDNLTLIRA-AE--------------------------QC-QQLVCCFVIDESW-F---KGN-RY------------------------G--------L-NGISQPRWRYIQQAIADLAASLQQ--HGQQLII-RKG------QPTTEISTLI------STL-----EVDA----------VYCSDDPGVYERRRWDTLVKRFP------------------------YI--TFERV-SNHTLLTERELDFP----L-EE---------------------LPATYSAFRKRFEP--LA-ETFPS-GQA---LSQLK--A--L-PPMPRRT-----------------I----AS----EH-------------------------------------------------------------------TPFVEPSGYLQGGELAAHEHLTQY-FK-SSA-------------PSHYKETRN--ALDNFADSTKLSAALAL----GNISPRQVID-----------ALRNYEA------------TQGA-NE--STYW---------------IVFELMWREYFHWYLRRFQEKVFKFGGIQ----------D-KKPT----------------------TSFYS-----------------QRFAAWCQGKTP-----------------YPIVNACMHQLNQTGYMSNRGRQL-------------------VASCLIH-ELQLDWRYGAAYFEQQLIDYDVASNWGNWQYLAGV----------------GADPR-GSRRFNLD---------------KQTQTYDPNGEFIKRWHGEQAVS-------KIDFTDAADWPLS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [441] 'gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01] >gi|84385647|ref|ZP 00988678.1| deoxyribo' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------KK-IGLYLFTNDLRINDNQLLYYA-AQ--------------------------SV-DKLICVIVEPTLV-R---FSA-DL-----------------------AQ--------E-QSYSAHRQAFVSQSIANLESNLVK--LGQQLVV-IRSNHLEPDTAEKTLSHII------VSQ-----HVTH----------FFANAHCGYDERQLIRSIQRQSP------------------------NL--VMCLP-HHSTLFDSHELPFE----L-SK---------------------VPSSFTKFRKLVEH--LD-----V-NRN---ETVIS--A--L-PPAVRLA-----------------L----TS----TS--------TISLFSS-------------------------------------------P--------NDESVVISDYWGGEGAGLAHLENY-FS-HDY-------------AFNYKQTRN--VFDGIENSTKFSPWLAL----GCVSPKTIYC-----------HLKQFEA------------DHGI-ND--STYW---------------IYFELLWREYFYWKCLSLGSSLFGETSDHEL--------N-SSNS----------------------SATLN-----------------LNLAKWKSGNTN-----------------YPIVDACMRQLNTTGYMSNRGRQL-------------------AASCLIY-ELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQVSTQTNKQKNANQAQPK--SRHFDLG---------------KQTDMYDPDHAFINKWNVRSKEL------VLTNNQDVL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [462] 'gi|86147737|ref|ZP 01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222] >gi|85834518|gb|EAQ52668.1| deoxyribodipyri' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------KK-IGLYLFTNDLRINDNQLLHYA-VQ--------------------------SV-GKLICVIVEPTLV-R---FSA-DL-----------------------AQ--------E-QSYGAHRQTFVSQSITNLESNLVK--FGQQLVV-IHSNHLEPDAAEQTLSQII------ATQ-----HVTH----------FFANAHCGYDERQLIHSLQSRHP------------------------NL--ITCLP-HHSTLFDQHELSFE----L-SK---------------------VPSSFTKFRKLVEH--LD-----V-NRN---ETVIS--A--L-PPAVRLA-----------------LTSTSTS----TS--------TISLFSS-------------------------------------------P--------NDESAVISDYWGGEDAGLAHLENY-FS-HDY-------------AFNYKQTRN--AFDGIENSTKFSPWLAL----GCVSPKTIYC-----------HLKQFEA------------DHGS-ND--STYW---------------IYFELLWREYFYWKCLSLGSSLFGETSNHKL--------D-SSNS----------------------SATLN-----------------LNLAKWKSGNTN-----------------YPIVDACMRQLNTTGYMSNRGRQL-------------------AASCLIY-ELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQVSTQTNKQKNANQAQPK--SRHFDLG---------------KQTDMYDPDHAFINKWNVRSKEL------VLTNNQDVL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [466] 'gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803] >gi|2499552|sp|Q55081|PHR SYNY3 Deoxyrib' M----------------------------------------------------------------------------------------------------------------------------------------------------------------GRQLILFPMSDQSDHPLILLWHRRDLRLNDHLALAKA-RQ--------------------------KT-AKIVGVFCLDNKI-L------------------------------------------QAEDMAPARVAYLLGCLQSLQDHYQR--LGSELLV-FQA------DPVQLLPKLA------NTL-----GAHG----------VTWTLDTEPYAQKRDLAVAQALR------ER----------------GL--AIATE-WDQLMHHPGEVLTQ----A-GS---------------------PYTVYTPFWKNWSQLPK--------TSP---VPTPK-----DLQGLTPAEKEKL-----APLEPL-AI----PQ----LA--------DLGF---------------------------------------------------------IWDQPLPLTPGEEAAEQRLDWFVAH-G---------------LEEYQQNRN---FPALDGTSQLSAALKF----GVISPRTLWQ-----------TTLEAWE------------QSRSEEARASIET---------------WQQELAWREFYQHCLYSFPALAQGPYRSP----------F-QEFP----------------------WEENQ-----------------DHFQAWCEGRTG-----------------YPIIDAAMAQLNQTGWMHNRCRMI-------------------VASFLIK-DLILNWQWGELYFMQTLYDGDLAANNGGWQWSASS----------------GMDPKP-LRIFNPH---------------TQAQKFDPEGEYIRTWLPQLAR----------FDTGDLLTGKLTPGSRRS--------------VNYPEPIVDHNQQQREFKRRYQL---------V-K------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [488] 'gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SK-LILFWHRRDLRISDNMGLAAA-RK--------------------------QS-SKIVGLFCLDPNI-L------------------------------------------NSNEVAPARVTYMLGCLQELKESYSK--IGSQLLI-VRG------EPIEAIPQLA------VAL-----QVTG----------VFWHKDGEPYARERDGKVEQELL------KQ----------------GI--AVTNY-WDQLLHPPEDILTQ----S-GK---------------------PYTVYTPFWKNWSQKPK--------LEV---AEKLD-----RIQGLTAEEIKIA-----QETGVV-SL----PT----GK--------DLGY---------------------------------------------------------YWDGELILTPGETAAREQLEEFSER-A---------------IAQYQEQRN---FPAVEGTSLLSPALRF----GVIGIRTVWQ-----------ATLEATK------------NSYSEEVRANIET---------------WQKELAWREFYQHALYHFPQLTVEPYRQQ----------F-KDFP----------------------WDNNP-----------------EHFQAWCEGKTG-----------------YPMVDAAMRQLNETGWMHNRCRMI-------------------VASFLTK-DLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASC----------------GMDPKP-LRIFNPA---------------SQAKKFDPEGEYIRQWLPELSS----------IDTEYLVRGKIPDDERER--------------CDYPQPIVDHNLRQREFKRRYKE---------L-SP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [475] 'gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] >gi' M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TIALVWFRQDLRLTDNPAFIEA-CS--------------------------HH-EIVIPLYIYDDKCSV----------------------------------------------LGQAQAWWLHYSLIALGKSLNQ--QGLSLVL-RKG------SPQEIILELV------AQY-----GVES----------VYWNRCYEPQVIARDKKIKLALV------ER----------------EI--KVQSF-NGNLLHEPWTIKNK----N-GD---------------------FFKVFTPYWKQCRQILN------I-PSPFILTKRPR--------GIEIAS---------DDIGKWKLL----PA----IN--------------------------------------------------------------------WAARFSEYWIPGEEGAQKKLDEFIVH-H---------------LSGYKRDRD---FPAKNATSRLSPHLHF----GEISPWVILR-----------ALELAKL------------EHTCDLA--SVEH---------------FLSELGWREFSVYLLYHFPKLDCENFRKE----------F-DAFP----------------------WQNDE-----------------QLLTCWQKGMTG-----------------YPIIDAGMRELWATGYMHNRVRMI-------------------VASFLTK-DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGC----------------GADAAPYFRIFNPI---------------LQSQKFDPDGVYIRQWIPELAQ----------LNSQSIHQPWTDADA----SSIFLG-------KKYPKPIIDHQEARTKALSYYQQ---------I-KKGMD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [471] 'gi|67921140|ref|ZP 00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501] >gi|67857257|gb|EAM52497.1| Deo' M-----------------------------------------------------------------------------------------------------------------------------------QDITRRVGNVSTDFKIVNSWVVILPTLLIVNCTLLNYNLSSMTN-SVIFWHRRDLRVSDNIGLSKA-YQ--------------------------HS-SKLVGLFCLDTDI-L------------------------------------------NQDNVAPARITYMLGCLQDLRESYQQ--LGGQLLI-FQG------NPTQIIPQVA------DAL-----KVDC----------VFWNNDVEPYSKKRDNQVIEALQ------ER----------------GI--HSQTY-WDQLLHAPGDILTK----SNNA---------------------PYKVYTPFWRSWLKEEK--------ANI---AQALG-----KLESLSEEEINTV-----KNLGII-DL----PT----AK--------DLGY---------------------------------------------------------SWDAPLILEPGETAAKEQLNYFCDS-L---------------IYNYQEQRN---YPGINGTSTLSPAFKF----GVIGIREVWQ-----------ATLSAYE------------NTYSDEARENIQT---------------WQQEIAWREFYQHCMYFFPELATGPYRQE----------F-KDFS----------------------WDNNE-----------------QHFQAWCEGKTG-----------------YPIVDAAMRQLNETGWMHNRCRMI-------------------VASFLTK-DLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASS----------------GMDPKP-LRIFNPA---------------SQAQKYDPDGEYIRLWVPEISS----------LDTEYLVTGKIPPLEAHS--------------CGYLQPIVDHKQQQREFKERYKQ---------I-KN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [518] 'gi|53750029|emb|CAH11419.1| hypothetical protein [Legionella pneumophila str. Paris] >gi|54296244|ref|YP 122613.1| hypothetical' M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TIALVWFRQDLRLTDNPAFIEA-CS--------------------------HH-EIVIPLYIYDDKCSV----------------------------------------------LGQAQAWWLHHSLIALGKSLNQ--QGLSLVL-RKG------DPQEIILELV------AQY-----GVES----------VYWNRCYEPQVIARDKKIKLALG------ER----------------EI--KVQSF-NGNLLHEPWTIKNK----N-GD---------------------FFKVFTPYWKQCRQILN------I-PSPFMLTKRPR--------GIEITS---------DDLGKWKLL----PA----IN--------------------------------------------------------------------WAARFSEYWTPGEEGAQKKLDEFIVH-H---------------LSGYKRERD---FPAKNATSRLSPHLHF----GEISPWVILR-----------ALELAKL------------EQTCDLA--SVEH---------------FLSELGWREFSVYLLYHFPKLDCENFRKE----------F-DAFP----------------------WQNDE-----------------QLLTCWQKGMTG-----------------YPIIDAGMRELWATGYMHNRVRMI-------------------VASFLTK-DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGC----------------GADAAPYFRIFNPV---------------LQSQKFDPDGIYIRQWIPELAQ----------LNSQSIHQPWTDADA----NSIFLG-------KKYPKPIIDHQEARTKALSYYQQ---------I-KKGMD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [471] 'gi|53753050|emb|CAH14497.1| hypothetical protein [Legionella pneumophila str. Lens] >gi|54293218|ref|YP 125633.1| hypothetical' M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TIALVWFRQDLRLTDNPAFIEA-CS--------------------------HH-EIVIPLYIYDDKCSV----------------------------------------------LGQAQAWWLHHSLIALGKSLNQ--QGLCLVL-RKG------APQEIILELV------AQY-----GVES----------VYWNRCYEPQAIARDKKIKLALG------ER----------------EI--KVQSF-NGNLLHEPWTIKNK----N-GD---------------------FFKVFTPYWKQCRQILN------I-PSPFMLTKRPR--------GIKITS---------DDLGKWKLL----PA----IN--------------------------------------------------------------------WAARFSEYWTPGEEGAQKKLDEFIVH-H---------------LSGYKRERD---FPAKNATSRLSPHLHF----GEISPWVILR-----------ALELAKL------------EQTCDLA--SVEH---------------FLSELGWREFSVYLLYHFPKLDCENFRKE----------F-DAFP----------------------WQNDE-----------------QLLTCWQKGMTG-----------------YPIIDAGMRELWATGYMHNRVRMI-------------------VASFLTK-DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGC----------------GADAAPYFRIFNPV---------------LQSQKFDPDGVYIRQWIPELAQ----------LNSQSIHQPWTDADA----SSIFLG-------KKYPKPIIDHQEARTKALSYYQQ---------I-KKGMD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [471] 'gi|18400841|ref|NP 566520.1| UVR3 (UV REPAIR DEFECTIVE 4) [Arabidopsis thaliana]' M--------------------------------------------------------------------------------------------------------------------------------------------------------QRFCVCSPSSYRLNPITSMATGS-GSLIWFRKGLRVHDNPALEYA-SK--------------------------GS-EFMYPVFVIDPHY-MESDPSAFSP---------------------------------GSSRAGVNRIRFLLESLKDLDSSLKK--LGSRLLV-FKG------EPGEVLVRCL------QEW-----KVKR----------LCFEYDTDPYYQALDVKVKDYAS------ST----------------GV--EVFSP-VSHTLFNPAHIIEK----NGGK---------------------PPLSYQSFLKVAGEPSC------A-KSE---LVMSY-------SSLPPIGDIGN--------LGISEV----PS----LE--------ELGYK------------------------------------------------------DDEQADWTPFRGGESEALKRLTKSISD-KAW-------------VANFEKPKGDPSAFLKPATTVMSPYLKF----GCLSSRYFYQ-----------CLQNIYK------------DVKKHTS--PPVS---------------LLGQLLWREFFYTTAFGTPNFDKMKGNRI----------C-KQIP----------------------WNEDH-----------------AMLAAWRDGKTG-----------------YPWIDAIMVQLLKWGWMHHLARHC-------------------VACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCS----------------SFFYQ-FNRIYSPI---------------SFGKKYDPDGKYIRHFLPVLKD----------MPKQYIYEPWTAPLSVQTKANCIVG-------KDYPKPMVLHDSASKECKRKMGE---------A-YALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRPKLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [556] 'gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana] >gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thali' M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGS-GSLIWFRKGLRVHDNPALEYA-SK--------------------------GS-EFMYPVFVIDPHY-MESDPSAFSP---------------------------------GSSRAGVNRIRFLLESLKDLDSSLKK--LGSRLLV-FKG------EPGEVLVRCL------QEW-----KVKR----------LCFEYDTDPYYQALDVKVKDYAS------ST----------------GV--EVFSP-VSHTLFNPAHIIEK----NGGK---------------------PPLSYQSFLKVAGEPSC------A-KSE---LVMSY-------SSLPPIGDIGN--------LGISEV----PS----LE--------ELGYK------------------------------------------------------DDEQADWTPFRGGESEALKRLTKSISD-KAW-------------VANFEKPKGDPSAFLKPATTVMSPYLKF----GCLSSRYFYQ-----------CLQNIYK------------DVKKHTS--PPVS---------------LLGQLLWREFFYTTAFGTPNFDKMKGNRI----------C-KQIP----------------------WNEDH-----------------AMLAAWRDGKTG-----------------YPWIDAIMVQLLKWGWMHHLARHC-------------------VACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCS----------------SFFYQ-FNRIYSPI---------------SFGKKYDPDGKYIRHFLPVLKD----------MPKQYIYEPWTAPLSVQTKANCIVG-------KDYPKPMVLHDSASKECKRKMGE---------A-YALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRPKLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [537] 'gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans >gi|58176793|pdb|1TEZ|C Chai' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-PILFWHRRDLRLSDNIGLAAA-RA--------------------------QS-AQLIGLFCLDPQI-L------------------------------------------QSADMAPARVAYLQGCLQELQQRYQQ--AGSRLLL-LQG------DPQHLIPQLA------QQL-----QAEA----------VYWNQDIEPYGRDRDGQVAAALK------TA----------------GI--RAVQL-WDQLLHSPDQILSG----S-GN---------------------PYSVYGPFWKNWQAQPK--------PTP---VATPT-----ELVDLSPEQLTAI-----APLLLS-EL----PT----LK--------QLGF---------------------------------------------------------DWDGGFPVEPGETAAIARLQEFCDR-A---------------IADYDPQRN---FPAEAGTSGLSPALKF----GAIGIRQAWQ-----------AASAAHA------------LSRSDEARNSIRV---------------WQQELAWREFYQHALYHFPSLADGPYRSL----------W-QQFP----------------------WENRE-----------------ALFTAWTQAQTG-----------------YPIVDAAMRQLTETGWMHNRCRMI-------------------VASFLTK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASS----------------GMDPKP-LRIFNPA---------------SQAKKFDATATYIKRWLPELRH----------VHPKDLISGEITPIERR----------------GYPAPIVNHNLRQKQFKALYNQ---------L-KAAI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [474] 'gi|81298923|ref|YP 399131.1| Deoxyribodipyrimidine photolyase [Synechococcus elongatus PCC 7942] >gi|580717|emb|CAA30190.1| unn' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-PILFWHRRDLRLSDNIGLAAA-RA--------------------------QS-AQLIGLFCLDPQI-L------------------------------------------QSADMAPARVAYLQGCLQELQQRYQQ--AGSRLLL-LQG------DPQHLIPQLA------QQL-----QAEA----------VYWNQDIEPYGRDRDGQVAAALK------TA----------------GI--RAVQL-WDQLLHSPDQILSG----S-GN---------------------PYSVYGPFWKNWQAQPK--------PTP---VATPT-----ELVDLSPEQLTAI-----APLLLS-EL----PT----LK--------QLGF---------------------------------------------------------DWDGGFPVEPGETAAIARLQEFCDR-A---------------IADYDPQRN---FPAEAGTSGLSPALKF----GAIGIRQAWQ-----------AASAAHA------------LSRSDEARNSIRV---------------WQQELAWREFYQHALYHFPSLADGPYRSL----------W-QQFP----------------------WENRE-----------------ALFTAWTQAQTG-----------------YPIVDAAMRQLTETGWMHNRCRMI-------------------VASFLTK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASS----------------GMDPKP-LRIFNPA---------------SQAKKFDATATYIKRWLPELRH----------VHPKDLISGEITPIERR----------------GYPAPIVNHNLRQKQFKALYNQ---------L-KAAIAE---PEAEPDS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [484] 'gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] >gi|33860843|ref|NP' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NKPRILFWHRKDLRIFDNQALIKA-FS--------------------------LS-DAITSTYIFDKNY--------------------------------------------SHDFNASSRAWFLGNSLQELGNNWKK--MGSRLVL-EEG------DPVLIIPQLA------KKI-----DAKF----------VFWNRSIEPYEINRDLEIKNNLK------EQ----------------NI--QVIET-WDHLLIEPLKIFSG----N-NN---------------------PYSVYGPFYKNLKSKINL-------LGS---FEQDK-----VVFQFKDIDNKFKENKAINSSDSV-LE----KF----IK--------NIKF---------------------------------------------------------PGSNICPCRPGENAAQTLLENFINEKK---------------IYSYNSARD---FPSHNGTSFLSASLRF----GTISIRKVWN-----------ATLNLNS------------DFANQENYLSIET---------------WQKELVWREFYQHCLFHFPELEKGPYRKK----------W-DHFP----------------------WQNNN-----------------ELFQHWSNGETG-----------------VPIVDAAMRQLNSTGWMHNRCRMI-------------------VASFLVK-DLICSWQMGEKKFMETLVDGDLAANNGGWQWSASS----------------GMDPKP-LRIFNPY---------------TQAKKFDPICEYIKYWIPELSR----------VSNSELLNGEISNLEKN----------------NYSSPIVNHNIQQRLFKSLYAE---------I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [478] 'gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301] >gi|56751401|ref|YP 172102.1| DNA photolyase [Syn' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-PILFWHRRDLRLSDNIGLAAA-RA--------------------------QS-AQLIGLFCLDPQI-L------------------------------------------QSADMAPARVAYLQGCLQELQQRYQQ--AGSRLLL-LQG------DPQHLIPQLA------QQL-----QAEA----------VYWNQDIEPYGRDRDGQVAAALK------TA----------------GI--RAVQL-WDQLLHSPDQILSG----S-GN---------------------PYSVYGPFWKNWQAQPK--------PTP---VATPT-----ELVDLSPEQLTAI-----APLLLS-EL----PT----LK--------QLGF---------------------------------------------------------DWDGGFPVEPGETAAIARLQEFCDR-A---------------IADYDPQRN---FPAEAGTSGLSPALKF----GAIGIRQAWR-----------AASAAHA------------LSRSDEARNSIRV---------------WQQELAWREFYQHALYHFPSLADGPYRSL----------W-QQFP----------------------WENRE-----------------ALFTAWTQAQTG-----------------YPIVDAAMRQLTETGWMHNRCWMI-------------------VASFLTK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASS----------------GMDPKP-LRIFNPA---------------SQAKKFDATATYIKRWLPELRH----------VHPKDLISGEITPIGRR----------------GYPAPIVNHNLRQKQFKALYNQ---------L-KAAIAE---PEAEPDS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [484] 'gi|53686955|ref|ZP 00106383.2| COG0415: Deoxyribodipyrimidine photolyase [Nostoc punctiforme PCC 73102]' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SD-LILFWHRRDLRISDNTGLAAA-KR--------------------------RS-PKVVGVFCLDPHI-L------------------------------------------ERDDVAPVRVTYMIGCLQKLQERYAQ--VGSQLLI-LHA------DPVQAIPALA------EAI-----NAKA----------VFWNWDVEPYSQERDRTIINALK------EK----------------GI--EFLNQNWDQILNSPDEIRTG----G-NS---------------------PYTVYTPFWKNWITKPK--------ANP---VETLQ-----NVEGLTEAEQEIA-----KLSGSL-TL----PS----AK--------DLGF---------------------------------------------------------IWDEQLIISPGEAAAQERLEEFTNK-A---------------ITEYQEQRN---FPAVDGTSQLSAALKF----GVIGIRTVWQ-----------ATIEALE------------NSRSEETAVNIRT---------------WQQELAWREFYQHAMYNFPELADGAFRDT----------F-KNFP----------------------WETNE-----------------EHFQAWCEGRTG-----------------YPIVDAAMRQMNESGWMHNRCRMI-------------------VASFLTK-DLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASS----------------GMDPKP-VRIFNPA---------------SQTQKFDPEGEYIRQWVSELRS----------VDTEYLVTGKIPPLERHA--------------VGYPDPIVDHKIQQNQFKLRYQQ---------Q-KNTS---------GGE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [481] 'gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120] >gi|17230217|ref|NP 486765.1| deoxyribopyrimid' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SD-LVLFWHRRDLRIADNIGLAAA-RQ--------------------------QS-SKVVGVFCLDPNI-L------------------------------------------ERDDVAPARVTYMIGSLQELQQRYVQ--AGSQLLI-LHG------DPVQAIPHLA------EAL-----NAKA----------VFWNWDVEPYSQTRDRAILDILK------DK----------------GI--QFLTHKWDQILHSPDEIRSG----S-NT---------------------PYTVYTPFWKNWSSKPK--------AKP---VETLQ-----NAEGLTESEQELA-----QKAGVK-TL----PT----AK--------DLGF---------------------------------------------------------FWDADLIIAPGEAAAQAKLEEFTAK-A---------------ITEYQEQRN---FPAVDGTSQLSAALKF----GVIGIRTVWQ-----------ATLEALE------------NSRSEEASAAIRT---------------WQQELAWREFYQHAMYNFPELADGAYRET----------F-KNFP----------------------WETNE-----------------EHFQAWREGKTG-----------------YPIVDAAMRQMNESGWMHNRCRMI-------------------VASFLTK-DLLINPQLGEKYFMQKLIDGDLSANNGGWQWSASS----------------GMDPKP-LRIFNPA---------------SQSQKFDPDAEYIRRWVPELRS----------MDTEYLVTGKITPLERHA--------------VGYVKPIVDHQKQQQLFKQRYQQ---------Q-KATS-----------L--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [479] 'gi|87300679|ref|ZP 01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701] >gi|87284550|gb|EAQ76502.1| Deoxyri' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NPPRWLFWHRRDLRLADNLGLAAA-AR--------------------------AT-AAVTGVFVFDPAL-L------------------------------------------DAPDLSPARLWFLSESLRELQGRWRE--AGSRLLL-LRG------DPAEVLPQLA------QAA-----GAQV----------VAWNRDVEPDGRARDRRVAEALR------AG----------------GC--KLLAD-WDQLLVPPDALATG----A-GD---------------------PYRVYGPFFRSWRRRIEQAGAEA--CAP---VAAPA-----SLIDLDPAALPAERRRLWDQLNWLETV----PTPGDGLP--------GAPF---------------------------------------------------------AGADLCPCRPGEAAAAAQLAAFADG-P---------------LLGYEPGRN---LPAEPGTSGLSAALRF----GTLSPRQAWA-----------AAQQQRP------------RARSEEELQSITV---------------WEQELAWREFYQQALFHFPELAEGPYRPQ----------W-RHFP----------------------WENDE-----------------GRFAAWCDGLTG-----------------VPIVDAAMRQLNDSGWMHNRCRMI-------------------VASFLVK-DLIVDWRWGERQFMRLLVDGDLAANNGGWQWSASS----------------GMDPKP-LRIFNPY---------------TQAARFDPEATYIRRWLPELSR----------VATADLIRGEIAPLERR----------------GYPGPIVDHKLQQARFKALHAASVAAPQEARL-RG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [499] lcl|Ppa_cryD_2_1_unnamed_protein_product M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAIVWFRRDLRLHDHAALHKA-VQ--------------------------TG-EDIVPVCILEDRF-C------------------------------------------RSETVGDLRLHAFLSAVGALETNLEH--AGSRLII-RHG------EPLQALEQLI------QET-----GADK----------LFYNRDYSPFARSRDEQVETAFR------SK----------------GI--FVQGC-KDLVLHGPGEIMNK----Q-GK---------------------AYAVFTPFRRVWQTLPK--------DRP---FPIAE--QFPAWDGITDLF----------------------SEKARGVE--------QFGRKKP------------------------------------------------------LGEQWKPSLFGEEAARQRLKQFIEE-D---------------LHCYKEKRD---FPGVAGTSRLSFALQA----GTLSIRTVYH-----------AAAEALL------------EARG-DEVASIES---------------FLTELIWREFYQQVLFFHPHTVEHAYLPQ----------F-EEVA----------------------WENKE-----------------ELFSLWCHAQTG-----------------YPIVDAAMRQLNETGWMHNRLRMI-------------------TASFLTK-DLLVDWRAGMAYFAKQLIDCDDAANIGGWQWSAST----------------GTDPQPYFRIFNPV---------------SQGEKFDPDGAFVKKYLPELQH----------VPLQYIHKPWKMPMHLQEQIGCVIG-------LDYLPPCVDHAQRRKLALSLFQE---------A-RDRHLTKTE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [485] 'gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1] >gi|22297968|ref|NP 681215.1| DNA photolyase [T' M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-LRLFWHRRDLRLNDNLGLAAA-YT--------------------------RT-PKVVGLFCFDPAI-L------------------------------------------SASDIAAVRVAYLVGCLQALQEAYRR--LGGSFLI-FRG------DPRQILPQVA------KGL-----GAVA----------VHWHEDVEPYGRERDRAVAAALK------EK----------------GI--AVETA-WDQLLHPPEAIQTK----Q-GQ---------------------PYTVYSPFWRNWSSLAK--------PEP---VSAPR-----HLEPLTEIEQATA-----GTLGAI-CL----PT----AK--------DLGF---------------------------------------------------------HWSGDLILAPGEAAAQAQLETFIDQ-H---------------IQDYGEQRN---YPAQPGTSLLSPALKF----GVIGIRRVWT-----------ATQAAMA------------AARSEEAQRSIRT---------------WQQELAWREFYQHALYWFPHLAERPHREG----------F-ATFP----------------------WLNNE-----------------AHFAAWCEGRTG-----------------YPIVDAAMRQLNETGWMHNRCRMI-------------------VASFLTK-DLIINPQWGERYFMQKLIDGDLAANNGGWQWSASS----------------GMDPKP-LRIFNPA---------------SQAQKFDPEAEYIRRWLPEVRS----------LDTIDLVTGNISPLERHR--------------CGYPLPIVDHRQQQQRFKQLYQE---------HFRSPI---------PQE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [480] 'gi|75704215|gb|ABA23891.1| DNA photolyase, FAD-binding [Anabaena variabilis ATCC 29413] >gi|75910490|ref|YP 324786.1| DNA photo' M-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SD-LVLFWHRRDLRITDNIGLATA-RQ--------------------------HS-SKVVGVFCLDPNI-L------------------------------------------ERDDVAPVRVTYMIGSLQELQQRYVQ--AGSQLLI-LRG------DPVQAIPHLA------EAL-----NAKA----------VFWNWDVEPYSQTRDRAIIATLK------DK----------------GI--QCLTHNWDQILHSPDEIRSG----S-NT---------------------PYTVYTPFWKNWSSKPK--------AKP---VETLH-----NVEGLTEAEQELA-----QKAGVK-AL----PT----AK--------DLGF---------------------------------------------------------FWDADLIIAPGEAAAQAKLAEFTAK-A---------------ITEYQEQRN---FPGVNGTSQLSAALKF----GVIGIRTVWQ-----------TTLEALE------------NSRSEETTTSIRT---------------WQQELAWREFYQHAMYNFPELADGAYRAT----------F-KNFP----------------------WETNE-----------------EHFQAWCEGKTG-----------------YPIVDAAMRQMNESGWMHNRCRMI-------------------VASFLTK-DLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASS----------------GMDPKP-LRIFNPA---------------SQSQKFDPDAEYIRQWVPELRS----------MDTEYLVTGKITPLERHA--------------VGYVKPIVDHQKQQQLFKQRYQQ---------Q-KAIG-----------I--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [479] lcl|3903_Cre_unnamed_protein_product M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGVK-NSIIWFRKGLRLHDNPALLEA-CK--------------------------DA-KHVYPVFVLDPHF-LQQ----------------------------------------SSYKVSVNRYNFLLESLEDLQRSFQA--RGSRLLV-LRG------KPEEVFPRVF------REW-----GVTQ----------LCFEHDTEPYAKVRDAAVRRLAA------EA----------------GV--EVVTP-ISHTLYDTDMLVAR----NGGA---------------------APLTMQSFTKLVDRVGD------P-PAP---APDPP-------AAMPPPAEDMP-----SAAPAATGV----PT----WQ--------EVGFK---------------------------------------------------------EPPLTVFKGGETEALARLEAAFQD-PKW-------------VAGFQKPDTDPSAWEKPATTVLSPYLKF----GCLSARLFHA-----------RLLEVYR------------RHPAHSQ--PPVS---------------LRGQLLWREFFYTVGSTTPNFHRMAGNPV----------C-KQID----------------------WDDNP-----------------EFLAAWREARTG-----------------FPWIDAIMTQLVTWGWMHHLARHS-------------------VACFLTRGDLYVSWERGMEVFEEHLIDQDHYLNAANWMWLSAS----------------AFFSQ-YFRVYSPV---------------VFGKKYDPEGRFIRKFLPVLKD----------MPAKYIYEPWTAPLEVQRKAGCVVG-------RDYPAPIVDHAVASKACIARMAA---------A-YRRSK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [494] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-177 199-227 230 244-291 314-315 323 327-332 343-348 352-356 361-370 394-417 420-421 427 439-448 450-470 485-495 499-501 507-514 518-542 545-548 551-620 640 642 645-661 671-673 690-693 704-714 722-733 738 741-742 747-761 791-800 802 807-828 834-850 863-879 904-922 930 966-982 987-988 996-1010 1033-1349; END; BEGIN MacClade; Version 4.0 87; LastModified -1056987877; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '12' '630' '1' all; EditorPosition '44' '22' '988' '1635'; TreeWindowPosition '46' '6' '981' '1630'; ListWindow Characters open Geneva '9' '50' '25' '273' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed 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