#NEXUS 
[MacClade 4.08 registered to Tomoaki Nishiyama, National Institute for Basic Biology]


BEGIN DATA;
	DIMENSIONS  NTAX=15 NCHAR=2186;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|42562994|ref|NP 176791.2| MMD1 (MALE MEIOCYTE DEATH 1); DNA binding / protein binding / zinc ion binding [Arabidopsis thalia'    M------------------------------------------------------------------------------------------------------------------PVPIIETCRKRKRKPKVYNLQRFGEDGFPI-------------QRNGAFRDQIRVFLRDCAEI-----------EDYDIRGMTVWCTLLS-------HETKSSLIPLYIVEENVKHS--SEPYCDHCRCTGWSNHFVSKRKYHFIIPIDTEWS----------------------------------------------LPLEDDAFDSQSHVLHGLIHCNGFGHLVCVNGM--ESGS-----------------------------------KYLCGREIVDFWDRLCNSL-------------------------GARMITVEDLAKKR--------------SVELRLLYGVAYGHSWFGRWGYKFCCG-------SFGVTKNEYENAIEAL-------GSLEI-DQIEFDFGELRQSKEINQV--------------------------------FRYYREM--SEGHLKTFRDLLRFMLIIKSHASPQKLLPVTPPLLTDSPHQKRSSRLLLKKSDVADNDKSPK----------------------------YRNYSTVAANLGSRWPVRRLIFAAEVIVESLKEMKALKQNGMTRQDVRDSARLHIGDTGLLDYVLKSMNNVVVG--DVLVRRYVDPITRILHYTIQDLDDAVKAKEPKKKEAVVLEEITPLRIL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPLKPGADVYGDLLLLYTNVLLNYPE----------------------SELVRSATQAILDSKHFIKEWPIWDNN--------------DTVLQFLCRINPSLVDVRS------------------------------------------EQTTELPPGELVTVPLQ------ATVYDLKQAIEETFRDTYCILSNFVVTEI-------------------------------------------------DEVEEDMSLIGSCSALTVRGHGID-------------LESKLKCQGGCDTWMVKCICRARDDDGERMISCDVCEVWQHTRCCGIDDSDTLPPLFVCSNCCEE-------------FAEQQRKV----LQPKYEFPSSENVFLLESADDFFGDQRCLGMIFPEENYLL   [704]
'gi|12322609|gb|AAG51303.1| PHD-finger protein, putative [Arabidopsis thaliana]'                                    M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GFRYNGTELFAIKLG-------HETKSSLIPLYIVEENVKHS--SEPYCDHCRCTGWSNHFVSKRKYHFIIPIDTEWS----------------------------------------------LPLEDDAFDSQSHVLHGLIHCNGFGHLVCVNGM--ESGS-----------------------------------KYLCGREIVDFWDRLCNSL-------------------------GARMITVEDLAKKR--------------SVELRLLYGVAYGHSWFGRWGYKFCCG-------SFGVTKNEYENAIEAL-------GSLEI-DQIEFDFGELRQSKEINQV--------------------------------FRYYREM--SEGHLKTFRDLLRFMLIIKSHASPQKLLPVTPPLLTDSPHQKRSSRLLLKKSDVADNDKSPK----------------------------YRNYSTVAANLGSRWPVRRLIFAAEVIVESLKEMKALKQNGMTRQDVRDSARLHIGDTGLLDYVLKSMNNVVVG--DVLVRRYVDPITRILHYTIQDLDDAVKAKEPKKKEAVVLEEITPLRIL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPLKPGADVYGDLLLLYTNVLLNYPE----------------------SELVRSATQAILDSKHFIKEWPIWDNN--------------DTVLQFLCRINPSLVDVRS------------------------------------------EQTTELPPGELVTVPLQ------ATVYDLKQAIEETFRDTYCILSNFVVTEI-------------------------------------------------DEVEEDMSLIGSCSALTVRGHGID-------------LESKLKCQGGCDTWMVKCICRARDDDGERMISCDVCEVWQHTRCCGIDDSDTLPPLFVCSNCCEE-------------FAEQQRKV----LQPKYEFPSSENVFLLESADDFFGDQRCLGMIFPEENYLL   [653]
'gi|15226359|ref|NP 178290.1| DNA binding / protein binding / zinc ion binding [Arabidopsis thaliana] >gi|4220491|gb|AAD12714.1|'    M------------------------------------------------------------------------------------------------------------------AITAYDALTERQKAPKVLLINDFAISSSSSSPPFF--------NLAATFRDNIRSFLREYAEI-----------EDYTIDGATVSTIFLG-------SQANGVVFPLYIIEQQISDSS-PNPLCDFCRCFGWGHHYVTKRKYHMIIPNRDEWN----------------------------------------------EPLKRESLTLSSHLMHGLIHCNGFGHLLCINTDLDDP-------------------------------------NHLSGDQIMDFWDRLCSTL-------------------------HTRKISLDDTSKKG--------------AMDLRLLHGVAYGRPWFGKWDYMFSHG-------SFGVKKDLYWRAILTL-------SSIEV-DKILEELSGTSKGRVMKKI--------------------------------IDFYRGS--TESPLATLSDLLRFMLGFISKAPIERKTAMALVAMSLDHVSYPTLRADENSEVCTSPDQESDDNGYESGRDTVLDDHNTTTSGIKPPQ--YYSFDDLSRREHSRWPGRRLNDAAQAVLKVFKERNS----TISRQDLREAVRSSIGDTGLIDFLLKHIDKVLIG--DQIVQRSTNPKSRMLQFSLRTINSRVQEQKRKKKRKVKPQETSEC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSTTPGLSPYDDILYLYQNLLLTYPD----------------------SDLYSEASQVILKCKSFVKEWSYQE----------------QNHLTVSCQVLPNHEELLR------------------------------------------DFTRLLPPGDLVAVPEN------ATIRELKSAAEKVLRDTYCITETFEVLEIRNRYLE-------------------------------------------KLDDNVSLKSQGNTEFMVKGFGLD-------------IGTELRYEGGFDDWTVDCKCGARDDDGERMVACDACKVWHHTLCNSIEDDEAVPSVFLCNMCYGD-------------SLRSKKRNLSIR----------------------------------------   [697]
lcl|Ppa_MMD1_3_1_unnamed_protein_product                                    ?RRGTHSFDSHLEIRSSTVLGAGKHPAFVVRRQIGLSVTNFSMATRGGYMVSRAPVSDCLMYPIASG---------SQLRLRFRSKVNRICVGADVVSEAH--SSDYLPTIACGMFATRDRAIRKRKRGERLFSFHNFADPGFPA-------------DYDGPFRDNVRTFLEECAES------------EVTVDGLPGWCVALE------DDSKQSARVDLLVFVEGVQDT--IHPYCDQCRCIGWSHHPVSNKRYHFIIPAPDHPERSKRANGILGAKICTNCKEPLLSGYLGCPSCGD-------------EALAAGFLYSQSHLLHGVIHCNGFGHLLRINGR--EKGS-----------------------------------DSSSGREIMDLWDRMCAML-------------------------RARKVSVEDVAKKC--------------SLELRLLHAVSYGESWYGRWGYKFGHG-------SFGITQQMYVKAVEAI-------REMPL-RVMGQHFEGVDQD--VLGI--------------------------------IALYQRI--SGQILQTVGDLIRFMMELKVRLPEHPETKGISKALKDNDRRSGSMS--------------------------------------------PAVSSSPPTDMPSRWSLKRLDLATQVIVEALKSCDRK---WMPRQDVRDAARVYIGDTGLLDYVLKSLGDRVVG--NHIVRRAVNPITKVLEYSLEDAITAAGVVRDQSRCQAPET-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACEVGRTQVLKDIVYIYKNVLENYKPAR-------------TSGIKHMLTAIPTAARIILDTKQFIKDYRGELTRKSANNDWNMDD---DELLRVMCTVVLNDDDPMR--------------------------------------------NRPSPPPELVVLPPH------ATVRDLKLEAQRAFRETYYIMHSFCVESIPDLVG--------------------------------------------DDEDLLFGAIESGSHVRIDGIGIH-------------TRHDWRYEGGIESWTVDCPCGTKDDDGERMIACDVCEVWQHTRCGGISDMDVIPQRFLCHRCSVNLNFYHTML---------------------------------------------------------   [794]
lcl|Ppa_MMD1_26_1_unnamed_protein_product                                    ?-------------------------------------------------CDRAPPTSSPAVPLTRSFLRMLITFYMTLKSSWKHILCFISWLHEVVMRAAGLKLDLNAHLLAGMFISRERAIRKRKRGERLFSFHSFADPGFPA-------------DYDGPFRDNVRTFLEECAES------------EVSVDGLPGWCVTLQ------DDSKQSGRVNLLVFVEDVQDS--LHPYCDQCRCIGWSHHPVSNKRYHFIIPASDNPERSKRTNGILSAKICLNCKEPLPSGYLRCPSCGD-------------EAVPAGFLYSQSHLLHGVIHCNGFGHLLRINGR--EKGS-----------------------------------DSASGREIMDLWDRMCAML-------------------------RARKISVEDVAKKC--------------SLELRLLHAVGYGEPWYGRWGYVFGHG-------SFGITQQMYVKAVEAI-------REMPL-RVMAQHFEGVDQD--VLNI--------------------------------IVLYQRI--SGQTLQTVGDLIRFMMELKVRLPDHPETKGMSKGLKDNHRRSSSLS--------------------------------------------PTVSSTPPTEMPSRWSLKRLDLATQVIVEALKSCDKK---WMPRQDVRDAARVYIGDTGLLDYVLKSLGNRIVG--NHIVRRAVNPITKVLEYSLEDAATAAGAVRDQSRCQAPET-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCEIGRTEVLKDIVYIYKNVLENYKPAR-------------TSGIKHMLTAIPTATRIILDTKQFIKDYRGELTRKSANNDWNMDD---DELLRVMCTVVLNDEDPVR--------------------------------------------NRPSPPPELVVLPPH------ATVRDLKLEAQRAFRETYFIMHSFCVESIPDLVC--------------------------------------------DDEDLLFGTIESGSHVRVEGSGIH-------------TCHDWRYEGGMESWTVDCPCGTKDDDGERMIACDVCEVWQHTRCGGISDMDVIPQRFLCHRCSINLTFYHTML---------------------------------------------------------   [756]
'gi|50918323|ref|XP 469558.1| putative collagen [Oryza sativa (japonica cultivar-group)] >gi|28301925|gb|AAO38818.1| hypothetica'    M------------------------------------------------------------------PSMRALERLASWPTPPPPPPPPPPPAKAAAAEAERPCPPSSAATTSSSSSSSASAAPAAAGAPRVYPLRDFPGREAA--------------GLGGAFRDNVRWLLRQWGGA-SPASPAAGGPGSASAAVAVAWRVLLS-------DDRTGVVVPIFAVEEPVASS--PKPLCDYCRWAGWSHHWVSKRKYHFIIPAPADWDR---------------------------------------------QLAADVILGRTDHLLHGLIHSNGFGHLVMLRGR--DGGS-----------------------------------TALSGRDIMDIWDCLCSAL-------------------------RARAVSVVDFSQKR--------------SLDLRLLLSVAHGDTWFTRWGYCLARG-------CFCVSTSTYAASVEAL-------AALPV---------DYLRSRHVRRV--------------------------------VTIYRRL--SNKPLVTVREFLRCLLDWKHLEPPLQLPPVKTCTRLQFMLPKPSVMKRHRQQP-------------------------------------CQRFEDVIDLLQCRWSKKRLLDAAEVVVDRLLEHGSGA--EMTRQAVRDAARGAIGDTGLLDFVIKSLGDTIVG--NYIVRRVPDAETRVLHFSLEEYEEPTPALLDVEVECTPLPPV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRWPSTVEVERDLRAVYRAMV----------------------------EVRSEAAQAVLDCKHWVKWWGLGDES--------------DDQLRFFVEWQPQPWEAAE-------------------------------------------LIRPMPLGEIVVVPLH------ASMGELLVESEHALRDTYYFFEEFQAEGLHGIAGE-------------------------------------------KWDPVMLGGAENGDTISVYGNGAD-------------METELRCHGGLDLWEVRCVCGAQDDDGERMIACDACDVWHHTRCVGIADSEPVPPLFLCVLCGGALMAAGPINS--------------------------------------------------------   [697]
'gi|15242181|ref|NP 197618.1| MS1 (MALE STERILITY 1); DNA binding [Arabidopsis thaliana] >gi|9757806|dbj|BAB08324.1| unnamed pro'    M------------------------------------------------------------------------------------------------------------ANLIRTDHQQHIPKKRKRGESRVFRLKTFGESGHPAE------------MNELSFRDNLAKLLEFGHFE--------------SSGLMGSWSFQLE-----IQRNPNPLYVLLFVVEEPIEAS--LNLRCNHCQYVGWGNQMICNKKYHFVIPSKETMAAFLKLEGGGYAFPE--------------------------------KESFSHLVELQGHVLHGFFHSNGFGHLLSLNGI--ETGS------------------------------------DLTGHQVMDLWDRLCTGL-------------------------KARKIGLNDASHKK--------------GMELRLLHGVAKGEPWFGRWGYRFGSG-------TYGVTQKIYEKALESV-------RNIPL-CLLNHHLTSLNRETPIL----------------------------------LSKYQSL--STEPLITLSDLFRFMLHLHSRLPRDNYMSN------------------------------------------------------------SRNQIISIDSTNCRWSQKRIQMAIKVVIESLKRVEYR---WISRQEVRDAARNYIGDTGLLDFVLKSLGNQVVG--NYLVRRSLNPVKKVLEYSLEDISNLLPSSNNELITLQNQNSMGKMATNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HNKITRGQVMKDMFYFYKHILMDYKGVL--------------GPIGGILNQIGMASRAILDAKYFIKEYHYIRDTSAKTLHLDR-----GEELGIFCTIAWKCHHHNN--------------------------------------------EIKVPPQECIVVKKD------ATLSEVYGEAERVFRDIYWELRDVVVESVVGGQI--------------------------------------------EITRVDEMALNGNKGLVLEGNVGMMMNIE--------VTKCYEDDDKKKDKRIECECGATEEDGERMVCCDICEVWQHTRCVGVQHNEEVPRIFLCQSCDQHLIPLSFLP---------------------------------------------------------   [672]
'gi|15554515|emb|CAC69664.1| male sterility 1 protein [Arabidopsis thaliana] >gi|15554513|emb|CAC69663.1| male sterility 1 prote'    M------------------------------------------------------------------------------------------------------------ANLIRTDHQQHIPKKRKRGESRVFRLKTFGESGHPAE------------MNELSFRDNLAKLLEFGHFE--------------SSGLMGSWSFQLE-----IQRNPNPLYVLLFVVEEPIEAS--LNLRCNHCQYVGWGNQMICNKKYHFVIPSKETMAAFLKLEGGGYAFPE--------------------------------KESFSHLVELQGHVLHGFFHSNGFGHLLSLNGI--ETGS------------------------------------DLTGHQVMDLWDRLCTGL-------------------------KARKIGLNDASHKK--------------GMELRLLHGVAKGEPWFGRWGYRFGSG-------TYGVTQKIYEKALESV-------RNIPL-CLLNHHLTSLNRETPIL----------------------------------LSKYQSL--STEPLITLSDLFRFMLHLHSRLPRDNYMSN------------------------------------------------------------SRNQIISIDSTNCRWSQKRIQMAIKVVIESLKRVEYR---WISRQEVRDAARNYIGDTGLLDFVLKSLGNQVVG--NYLVRRSLNPVKKVLEYSLEDISNLLPSGNNELITLQNQNSMGKMATNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HNKITRGQVMKDMFYFYKHILMDYKGVL--------------GPIGGILNQIGMASRAILDAKYFIKEYHYIRDTSAKTLHLDR-----GEELGIFCTIAWKCHHHNN--------------------------------------------EIKVPPQECIVVKKD------ATLSEVYGEAERVFRDIYWELRDVVVESVVGGQI--------------------------------------------EITRVDEMALNGNKGLVLEGNVGMMMNIE--------VTKCYEDDDKKKDKRIECECGATEEDGERMVCCDICEVWQHTRCVGVQHNEEVPRIFLCQSCDQHLIPLSFLP---------------------------------------------------------   [672]
'gi|51535875|dbj|BAD37958.1| putative male sterility 1 protein [Oryza sativa (japonica cultivar-group)]'                             M---------------------------------------------------------------------------------------------------------------APKMVISLGSSRRRKRGEMLFRFEAFCQPGYPANF-----------AGAGGFRDNVRTLLGFAHLE------------AGVHGETKCWSFQLE------LHRHPPTVVRLFVVEEEVAAS--PHRQCHLCRHIGWGRHLICSKRYHFLLPRRESAAEADGLCFAINHGGGGGAEKAS-------------------------SKGTTTTASSRGHLLHGVVHLNGYGHLVALHGL--EGGS-----------------------------------DFVSGHQIMDLWDRICSAL-------------------------HVRTVSLVDTARKG--------------HMELRLLHGVAYGETWFGRWGYRYGRP-------SYGVALPSYRQSLHVL-------GSMPL-CVLVPHLSCFSQELPMV----------------------------------VTKYQAI--SGHKLLSLGDLLRFMLELRARLPATSVTAM--------------------------------------------------------------DYRGIMSEASCRWSAKRVDMAARAVVDALRRAEPAAR-WVTRQEVRDAARAYIGDTGLLDFVLKSLGNHIVG--NYVVRRTMNPVTKVLEYCLEDVSSVLPAVAAGGGVPAQGKMRV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RFQLTRAQLMRDLVHLYRHVLKEPSQAL----------------TGGAFGAIPVAVRMVLDIKHFVKDYHEGQAAASSNGGGGFG----HPHINLCCTLLVSNGSPEL-----------------------------------------------APPYETVTLPAH------ATVGELKWEAQRVFSEMYLGLRSFAADSVVGVGAD-------------------------------------------QEGLPVLGLVDVGSAVVVQGSVGEQINGEDHERKEEAAAAAVCEGSGGGERVVDCACGAVDDDGERMACCDICEAWQHTRCAGIADTEDAPHVFLCSRCDNDVVSFPSFNC--------------------------------------------------------   [679]
lcl|Smo_MMD1_13_1_unnamed_protein_product                                    M---------------------------------------------------------------------------------------------------------------------VLYRPPKRARVVERFSLERFGSGGYPA-------------DFSGPFRSNVRAFLNEFGQM-----------MAAPMPGVQRWCVPLV--------SQRGAEQSLLVLEELPFES--GALGCSHCRIIGWSHHPVCGARYHFILHAPGKLEALGVGKGHKLCSHCGSVIASSIT-----------------------SSSRTIVLENTSHLLHGIIHSNGYGHLLRVNGF--EGGS-----------------------------------SSLSGREIMNLWDRLCTMM-------------------------RARKVSVLDASKKF--------------GTSFRLLHAVAKGQPWYGLWGYQFGRG-------SFGITDAAYKKAVNQI-------ASTPLSFFLDLGDERLRRI--------------------------------------ATYYRNG-----RTGNLQELVSHFMELLHALSSKATGSKATVPAGVNA---------------------------------------------------PPAPAPAPNRNSQRWSAKRLDKTLDVLLTALRQFGLNE--WMPRIKLREQARLHIGDTGLLDHSLCSFVGKIVG--DLVVQRRRDEQFRQLEYRLARIESPEIQDKKEE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADAPEFSKVLDDLRYLYSKVL--------------------AGGLLPEDDPLAQASRTVLDTKHFIKDYNGNSETDPCDEPG-------AEVFRVQCRMESVEQGGDQ----------------------------------------------GGAPSELVVLPAS------ATVGDLKREAAKAFRDVYPSLGQLRVTSIPVLEGEA------------------------------------------DERPLKLVKIQRTAEVAIRATGIDN------------RFSAGRFEKGVDDWVVNCRCGARDDDGERMAACDSCGVWSHTRCAHIRDGDDVPEQFFCGGCT-------------------------------------------------------------------   [638]
'gi|18398841|ref|NP 564424.1| DNA binding / protein binding / zinc ion binding [Arabidopsis thaliana] >gi|14334762|gb|AAK59559.1'    M-------------------------------------------------------------------------------------------------------------AVMNGGRATKRARRSNRISADLYDFSTFPTAEINGES-----------TTLPPFRDGVRTFLATHARV--------TFPPSTLFSSLMTWQIMLRPGDSTDGSDLSSKLVSLDVVEEDVTRSS-RSVYCEHCCVVGWSSHPVCRKRYRFIIRSGGDTKACTRCGNTQNLSEGSNCKWCSMALDI--------------------ENWVYSQLEDNTHLLHGVIHSNGYAHLLCLNGR--EGGS-----------------------------------GFLTGRAIMDFWDRLCSSL-------------------------AVRKASVMDVSRKY--------------GMDYRLLHGITRGCSWYSEWGYEFKSG-------SYALTKEAYQSAVDTL-------SAIPL-SEFLFQGRKPRTQ--LHSI--------------------------------ISFYQSL--SCSELVTVKDLFSFLL---------------------------------------------------------------------QMIRENSSKPASKSSVLCAWSKSDVERVQQTMVKILKASGRPQANWVTRWALKRSICKS-ASPQLIDYCLKHFGGVLVDDGSRVVSSRCNPGSNDFEYRLESVNNVHRLSNQD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNNASVEHVKQDLRYLYETLLHPQ--------------TMAEFRSRATREKMIDAATKILDCKHFIKDYLSSTVN--------------PVAINLWCCVELSDELKES----------------------------------------------PAPPPERLVLPLN------ATVSDLKIEAAKAFQEVYAMFKRFEVEELLGYGSI-------------------------------------------DDSITLKFLVGTNGVIRIKGRCSKH------------GLLRYRMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL--------------YSKKPKQ----SKKERGSSQVPKAGFVCRGESAAMGSGSNLSVTLRVG---   [697]
'gi|34907348|ref|NP 915021.1| putative male sterility 1 protein [Oryza sativa (japonica cultivar-group)] >gi|22202666|dbj|BAC073'    M-------------------------------------------------------------------------------------------------------------------VVNSRPLKRARTRVEARDFAGFPPAGDG--------------GAAGTFREAVRGFLARYARL-LPLPSIFSPAAAAAPPHLLTWRVSLR-VGEEGDEEGGGGAVELNVVEEDVLRS--RSVYCDQCRVVGWSGHPVCGKRYHFIIENDNNQVCGKRHSCCLRCGTPTVAGESR------------CLLCNFDMDGEELEECGYMHLDDNTHLLHAVVHANGYGHLLRVNGR--EGGS-----------------------------------RCLTGRDIMSFWDRLCKVL-------------------------HVRKVTVMDISKKH--------------GMEYRLLHAITSGHPWYGEWGYKFGAG-------SFALTSDTYQEAVDTL-------SGIQL-ALYFSHRQPIRTP--LQNT--------------------------------IALYWAL--SDRQLVTVRDLFRFIMHLLHQARKKNETSKPT----------------------------------------------------------TDEHKEVASNVLCKWTKEDIDRAETAMLKVLRVVQPGQ--WVSWRALRGAASKAVDSQELLDYSLRGLGGKLMDD-GHFIAVRCNAETSAIEYRLEDNSNQSVDAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AFGPSVDHLLHDLKFLYNALLNPE--------------TMLASQPEVIGASSHSAAAKILDCKQFIKHYDQHTPRAPLN----------PFLLSVRCSIELLDHPKDY----------------------------------------------TAPPVELVLLPAS------ATLAELKIQATRAFQETYLMFQSYQVEQLPDFPNF-------------------------------------------SDTTLVKHVLGSSQLVRVRGRCTGDNR----------RIVQFRMERGLENWTVDCTCGAKDDDGERMLACDVCGVWQHTRCSGISDFDDVPEKFICRKCASP--------------RRGKGRG----GGGGNGGSRMDVSAAGRCKDEIGSSVGGAGKFGRMATVG-   [716]
lcl|Smo_MMD1_5_2_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNLWDRLCTMM-------------------------RARKVSVLDASKKF--------------GTSFRLLHAVAKGQPWYGLWGYQFGRG-------SFGITDAAYKKAVNQI-------ASTRLSFFLDLGDERLRRI--------------------------------------ATYYRNG-----RTGNLQELVSHFMELLHALSSKATGSKATVPAGVNA---------------------------------------------------PPAPAPAPNRNSQRWSAKRLDKTLDVLLTALRQFGLNE--WMPRIKLREQARLHIGDTGLLDHSLCSFVGKIVG--DLVVQRRRDEQFRQLEYRLARIESPEIQEKKEE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADAPEFSKVLDDLRYLYSKVL--------------------AGGLLPEDDPLAQASRTVLDTKHFIKDYNGNSETDPCDEPG-------AEVFRVQCRMESVEQGGDQ----------------------------------------------GGAPSELVVLPAS------ATVGDLKREAAKAFRDVYPSLGQLRVTSIPVLEGEA------------------------------------------DERPLKLVKIQRTAEVAIRATGIDN------------RFSAGRFEKGVDDWVVNCRCGARDDDGERMAACDSCGVWSHTRCAHIRDGDDVPEQFFCGGCT-------------------------------------------------------------------   [453]
'gi|62732779|gb|AAX94898.1| PHD-finger, putative [Oryza sativa (japonica cultivar-group)] >gi|62734539|gb|AAX96648.1| PHD-finger'    M----------------------------------------------------------------------------------------------------AVRRRGASAVAVHGGGGRVPKRARVTAEPSLLDVRAFPGQKEEGEKQPARGGGKKSSSSSSTFRAQVRGFLARCAVA------VPASEAGELSPGMSSWHVGFT-------TAGGEAVAVMEVVEEEVARA--RRVYCEHCTVAGWSKHPVCSKRYHFIIRNENETGTSKTCRRCGFMVALQETRCPS--------------CNHVGLSRDDPEDWDYVQLESPRHLLHGIVHENGFGHLVRINGR--EGGS-----------------------------------SVMTGSQLINFWDRLCRYL-------------------------RVRKVSVIDVSKKY--------------GADYRSLHAVATGCSWYGLWGFKLSSG-------SFGITPQDYSKAVESL-------SSVPL-SNFFPHTRSPRNQ--LQNT--------------------------------IAFYQSL--SRHPLTTIRELFAYIMELATGKSVHK------------------------------------------------------------------EKMAYDANYQEEFPEEELQRATNIALKILRAADR----WVATRTLKAVTSHPIGSPQLVDYCIKTLGGTRTDD-GMVVAIRCNSEMNTVEYRLTTETLFPPNN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VCTLTQDHLFRDIKFLYDALLYPY--------------TMHPYMPEENYQHAKRSAMILLDCKQFIKHYDLEEDFLPQN----------PSQLHIWCQVELADQVDDP----------------------------------------------PCIPAELITLPQA------ATIADLKGEAARAFRDIYLMLQSFVADQLLDCATA-------------------------------------------SDTTQIKLLFGAKGAVHIKGRCIGGER----------RFAIYRMERGVDKWTVKCSCGATDDDGERMLSCDTCHMWMHTRCAGISDFDRVPKRYVCKSCKLT----------------HKPKS----SGPRLMYSSAPNKRCKTGTGSFSNAAEGLLWPQIS-----   [715]
lcl|6286_Cre_unnamed_protein_product                                    --------------MPGA---------------------------------------------------------------------------------ASGAANATAAATAAAALAAAPAQTGQPTAAQQQLADSVVPAAAVIANA-----------AVTTAVTEAAAGHGVPCAGVASTAGPPLELPVQAPPDVSVAAPAAVSGVVAAEAADTAMVEAAAVVATEAEASGSAAAPMSESAE-AGAGTASIA---------------LAGAAADAAMAEATPGPAEASD------------------------AALLTDGTCGLEHSTAGSLQAAAVPHSAPLTSELAAGAAAETAGPSAAPVGAPGAPDPAALAAPDVAMTPPPVVDGSAGGMEVDAPAATAPAVGPGGLPADGMAPEAVLVPALGSDAAQSSAVATMDASASAPAPSTDEAGLVAGEGVDAAAESAAAATDPGGGAESMAAESGVAGPGLSSAGAQDVDAEAAVEAIPAATDAGEGIAVEAAIADEAGGITAAPGTGAVQPAPMDVSPAASGRSPDAAAEAADGPGGEAMEVEQATAAPAEAQSVAVAPEVAGSAPPVDVHMSGSQLTAGGAVTAEVEAATSGAVNGDADAPWSADGDGKRRRSSSLLQCGAHIGPAPDDLPKEVTPE--ELTDLKA--VVELDMSVRDCQRAVDAMLAALKSHCDNK--WLARLQLRDVMMDYYRDFKLLDWVLKQVANVRIS--GYAIYRSRYNVTRSYYYRLERLPGTAADASLEYTVPVPPHGPFARKVGRSGHRKPQSAASRAAAAARALKANGVLKGAAGAGRKQEDKEADGDEERRQSGAAAGPSDAHPVQSGAAAAAGRGGAKAAVQAAAARKTAAPGSAAVGGPAGHAGALARSPVQLRSKAGGTGTAKAAAAKAAIAKATNRVALATGANSRASAGASPATQAAAAAAAPSTPATGAGAGSHPNAEAGSKPNGQGQGSAQQHSQQQQQHTHTQQSSGARPSALPAWRGMAREHQSEGQALLETLLESRIEQQTAGGSERGAGGGAGGGGGATRVPRELRYLMSQSTLSKLKKQEQKQHHHTPKSQPAALPSSTDGPAPSGDAATGAEKSEEAKPAELKAEDAVVKLEVSKPVNTPPRPPVGGRKRLVGAAAAAAARAAAKRAAAAEAAAAVAATGAAEAVGGAGGAEPGAVELKAEPAVKPEAVQTLKHEPGPVPSSATAAAAAAAAGPAQEPKQHPPQPPSGDDSTAHPGTAALSGGHRPQRARVASKLAIQMAETETAVTPAAGAKEDPLKCPLGFAVRRGPRSARKGPRPSAGSVPLAAARMLAAVLAGAGPRPAGHAGGPKAAVKVRSKSPAVGTTTAAAAAAKAAKGSGPTGDGAAPAEGSGAAGHPVGVGYPQQQPLQLDRADTGASNLTAASPMSPMTASHGATADGGATADGMDAARGGCTRIRLGKVAHPAALTSPLGRNLPAPVLPPTTTDAAAAAAAGSAAGAAGAVGTVTKDTPASHRGAPRGSRALSMLGTPVDTGPLPRRAAAVAASAAVAAAAAAAATGTDFGAAYPSSTIRKARVPQGSTAKPPKGPKALARKSAPPAMDADGALTAASIAAMQALATLPQRYPPVPSPPPGGWRLVPSPGASASADIASVLGATAKEREPFDLLLRELPLSYVHKVLHGGGSASMPSVTDAAGGGDAGPMVAMPRGGAKRGRPGSFAAIAIAAATGTNNSSTPGTAFDPEPPAPTNPYVVPGKAHHNSSLTYINDQTQCDLQYLYCAVLRLYKPSMHLAAALLNKRALTSAPRPLSLSYMAAAVQMLKDTKYFVKDY------GGASAATLAAATAADGRLRVLVSLQLDDEQVAEEEKQTQQQRTGRARGDRSAAAAAAAQAASVAATAAHSPAPRVPRQLDTAPPEVVIVTASEGSGGVVTVGDLKRAAAAALADTYRMCCSRSTGGGGGAGGDSAACSGVSITRIVAGVDEQALAAGDEAPLVLLPPPATAAAPAAAAGAQAPGAAGAGGSTVVVVRCSGLD-----------LDTRWRHTGGPEEWRVACLCGTQDDDGERMIACDVCGVWSHTRCNDIADELDEPPAFVCRECAAS-KP------VAGG----GGGG----KGAKGLKSIKAPK---------------------------   [1973]
;
END;


BEGIN CODONS;
	CODESET  * UNTITLED = Universal: all ;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
	EXSET * UNTITLED  =  1-494 511-687 706-714 725-732 747-751 776-1770 1790-1822 1838-1925 1935-1942 1965-2028 2043-2060 2119-2186;
END;


BEGIN MacClade;
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	PrettyPrint 10;
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	TreeWindow 0000;
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