#NEXUS [MacClade 4.08 registered to Tomoaki Nishiyama, National Institute for Basic Biology] BEGIN DATA; DIMENSIONS NTAX=33 NCHAR=1149; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|15236410|ref|NP 193147.1| COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) [Arabidopsis thaliana] >gi|18056673|gb|AAL58110.1| CSN comp' --------------------------------------------------------------------------------MDLSPVKEALAAKSF----DKI-----------------------------------------ADICDTLMLQV---------------------------ASEGIEYHDDW-PYAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAG--VYEAIRGYDW---SQEAKDMVAAFSDLYTKRMFQLL----LSAYSTITIHDLALFL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMTEDDATT-------YVVENGWTVDAASQMASVKKQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVKREQKVDSSKLQRLTEYVF------------------------------------------------------------------------HLEH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [197] gi|1256771|gb|AAA96516.1|_COP9 -------------------------------------------------------------------------MEEVATTMDFSPLTDAIASESY----DKI-----------------------------------------ADICDNLMLQV---------------------------SAEGIVFQNDW-PYAIHLLGHIYAGDINSARFLWKSIPIAIKESQPEIIAVWGIGQKLWTRDYAG--VYEAVRSFNW---SPQIHPFIAAFSDNNTKKMFQLL----VAAYSTISVQDTALFL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMSEDEATT-------YVLQEGWILDSAARMLTVKKQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TIVTEQKLDPSKLQRLTEYVF------------------------------------------------------------------------HLEH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [204] 'gi|29468343|gb|AAO85511.1| CSN8 [Nicotiana benthamiana]' --------------------------------------------------------------------------------MDTSQLNEALTSKSF----DKI-----------------------------------------ADICDNLLLQG---------------------------AAEGIDCQDEW-PYTIHLLGHIYNNDINSARFLWKKIPAALKEGRPEVVAVWRIGQKLWTRDYVG--VYEAIREFSW---TPEVQPIVASFAELYRKRMFELL----LSAYSTISPQDTAQFL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMNENDATN-------YVLQQGWVLDPASQMLTVKKQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVVTEQKLDPSKLQRLTEYVF------------------------------------------------------------------------HLEH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [197] 'gi|50924266|ref|XP 472493.1| OSJNBa0042L16.3 [Oryza sativa (japonica cultivar-group)]' --------------------------------------------------------------------------------MDLAAVHAALAGKSY----SSV-----------------------------------------APLCDDLFLQA---------------------------ASRGAA-TDGW-PYAVHLLAHLYLNDLNSARFLWKSTPQEAKDARPELAAVWRIGQCLWNRDYAG--VYAAAQGFEW---SPEIADFVAAFLESYRKRIFQLL----TSAYSTISVADVAHFM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMNEEDATN-------YAMQNGWSLDAAARMLTVVKP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVKTNQKLDASKLQRLTECVF------------------------------------------------------------------------HLEH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [196] 'gi|47027022|gb|AAT08726.1| multisubunit regulator protein COP9 [Hyacinthus orientalis]' ---------------------------------------------------------------------------------------SAMSS----------------------------------------------------------LLQV---------------------------ASKGIAFQHEW-PYAIHLLGHIYVNDINSARFLWKSIPSNIKESRSEIVSVWKIGQCLWTRDYAG--VYVAVRRFEW---SSEVVGIATAFIESYTKRMFQLL----LSAYSTISVTDTAHFL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMSEDDATS-------YALQHGWTLDSSSNMLTVKKP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SVVTQQKLDTSKLQRLTEYVF------------------------------------------------------------------------HLEH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [177] lcl|Smo_COP9_1_1_unnamed_protein_product --------------------------------------------------------------------------------MDINAVRDLIAARRF----NEI-----------------------------------------AAFCESLELEY---------------------------AARGSEHGEDW-PYAIHILGHIYNSDLDSARFLWKRIPDSIKQSQMELAQVWKIGQCMWTHDYVA--VHEAIRGFDW---TPDVKQVVAAVAEDFSRKIFRLL----STAYSTLSIPDAASFF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLTESETIA-------LAEQQGWILDPTSQMFNVRAI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTAEQKLDTSNLQNLTEYVF------------------------------------------------------------------------HLEH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [197] lcl|Smo_COP9_2_1_unnamed_protein_product -------------------------------------------------------------------------MMRFVRIVWPNAASHVLLTGSFDGWTNKIKMEKSGAGVFVTALHLYPGRYEVKFIVDGTWRVDPCRPITYADGIENNVLMY---------------------------AARGSEHGEDW-PYAIHILGHIYNSDLDSARFLWKRIPDSIKQSQMELAQVWKIGQCMWTHDYVA--VHEAIRGFDW---TPDVKQVVAAVAEDFSRKIFRLL----STAYSTLSIPDAASFF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLTESETIA-------LAEQQGWILDPTSQMFNVRSI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTAEQKLDTSNLQNLTEYVF------------------------------------------------------------------------HLEH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [249] lcl|Ppa_COP9_1_1_unnamed_protein_product ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IAASGASKPEDW-PYAVHVLSHVVNHDLNSARFVWKRTAQTIKESSPELVAAWKIVQNMWTHDHAG--VYKALKGFDW---SEQVQPVATAISNDYSSCMLRLL----STAYSTVSVADASGFL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLSENETVT------FLTQQHGWVLDPASQMLTVRPM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSVVNKKADSSQLQDLTEYVF------------------------------------------------------------------------HLEH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [170] 'gi|55976404|sp|Q6GQA6|CSN8 XENLA COP9 signalosome complex subunit 8 (Signalosome subunit 8)' --------------------------------------------------------------------------------MKLSESVMAQNSVSF----QKL-----------------------------------------QEQCEEQELE----------------------------APGGIASPQ---VYNQLLALYLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPG--IYTSISAYQW---SENIQQIMEAVRDATQQRAFGLV----SQAYTSISADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GVLEQGWQADSATGMVMPKKP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSAPLSLIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [195] 'gi|51895832|gb|AAH81245.1| Cops8-prov protein [Xenopus laevis]' ----------------------------------------------------------------------------------MPVAVMAQNPVSF----QRL-----------------------------------------QEQCEEQELE----------------------------APGGIASPP---VYSQLLALYLLHNDMNNARYLWKRIPPAIKSAHSELGGIWEVGQKIWQRDFPG--IYTSISAYQW---SENIQPIMEAVRDATRRRAFGLV----SQAYTSISVDDFASFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GVLEQGWQADSATRMVMPKKP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSAPLSLIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [193] 'gi|49117912|gb|AAH72840.1| MGC80215 protein [Xenopus laevis]' ---------------------------------------------------------------------------------------MAQNSVSF----QKL-----------------------------------------QEQCEEQELE----------------------------APGGIASPQ---VYNQLLALYLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPG--IYTSISAYQW---SENIQQIMEAVRDATQQRAFGLV----SQAYTSISADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GVLEQGWQADSATGMVMPKKP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSAPLSLIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [188] 'gi|28374344|gb|AAH46071.1| COP9 signalosome subunit 8 [Danio rerio] >gi|41055478|ref|NP 956523.1| COP9 signalosome subunit 8 [D' ----------------------------------------------------------------------------------MPVCVMMAE--LD----EKL-----------------------------------------LLQFETQELE----------------------------APGGIATPQ---VYSQLLVLYLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPG--IYSAIAAYQW---SESILPVMEALRESTRRRAYGLV----AQAYTSISAEDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GYSVEEAVK-------GVVSHGWQADPNTRMIMPQKP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPPPVSLVP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [191] 'gi|45360861|ref|NP 989106.1| COP9 signalosome subunit 8 isoform 1 [Xenopus tropicalis] >gi|38566156|gb|AAH62497.1| COP9 signalo' ----------------------------------------------------------------------------------MPVAVMAQNPVSF----QRL-----------------------------------------QEQCEEQELE----------------------------APGGIANPQ---VYSQLLALYLLHNDMNNARYLWKRIPPAIKSAHSELGGIWEVGQKIWQRDFPG--IYTSISACQW---SEAIQPVMEAVRDATRRRAFGLV----SQAYTSISADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLSVEEAVK-------GVIEQGWQADLATRMVMPKKP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSAPLSLIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [193] 'gi|50750115|ref|XP 421877.1| PREDICTED: similar to COP9 signalosome subunit 8 isoform 1 [Gallus gallus]' -----------------------------------------------------------MSETEVTPRRGRRLREGSCGRGRMPVAVMAEGGFGF----RKL-----------------------------------------LEQCETQELE----------------------------APGGIATPL---VYGQLLALYLLHNDMNNARYLWKRIPPAIKSANAELGAVWSVGQRIWQRDFPG--IYTTISAHQW---SETVQPIMEALRDATRRRAFGLV----SQAYTSIVADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GVLEQGWQADFSTRMVMPKKP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVLDASFNRFIPSSEPAPVPPIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [230] 'gi|76686329|ref|XP 877350.1| PREDICTED: similar to COP9 signalosome complex subunit 8 (Signalosome subunit 8) (SGN8) (JAB1-cont' ----------------------------------------------------------------------------------MPVAVMAESSFSF----KKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQQIWQRDFPG--VYSTINAHQW---SEAVQPIMEALRDATRRRAFALV----SQAYTSIIADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GILEQGWQADSTIRIVMPKKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------PTPVPPIP----KEQQLARLTDYVA------------------------------------------------------------------------FLKN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [193] 'gi|19526372|gb|AAL89689.1| COP9 signalosome subunit 8 [Mus musculus] >gi|31981583|ref|NP 598566.2| COP9 signalosome subunit 8 [' ----------------------------------------------------------------------------------MPVAVMADNAFSF----RKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPG--IYTTINAHQW---SETVQPIMEALRDATRRRAFALV----SQAYTSIIADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GVLEQGWQADSTTRMVLPRKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASGTLDVSLNRFIPLSEPAPVPPIP----MSRQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [209] 'gi|30024961|gb|AAP13731.1| COP9 signalosome subunit 8 [Mus musculus]' ----------------------------------------------------------------------------------MPVAVMADNAFSF----RKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPG--IYTTINAHQW---SETVQPIMEALRDATRRRAFALV----SQAYTSIIADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GVLEQGWQADSTTRMVLPRKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASGTLDVSLNRFIPLSEPAPVPPIP----TSRQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [209] 'gi|38648875|gb|AAH63182.1| COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana) (predicted) [Rattus n' ----------------------------------------------------------------------------------MPVAVMADNAFSF----RKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPG--IYTTINAHQW---SETVQPIMEALRDATRRRAFALV----SQAYTSIIADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GVLEQGWQADSTTRMVLPRKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APGALDVSLNRFIPLSEPAPVPPIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [209] 'gi|18204555|gb|AAH21488.1| COP9 signalosome subunit 8 [Mus musculus] >gi|19353496|gb|AAH24421.1| COP9 signalosome subunit 8 [Mu' ----------------------------------------------------------------------------------MPVAVMADNAFSF----RKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPG--IYTTINAHQW---SETVQPIMEALRDATRRRAFALV----SQAYTSIIADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GVLEQGWQADSTTRMVLPRKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASGTLDVSLNRFIPLSEPAPVPPIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [209] 'gi|73994194|ref|XP 534612.2| PREDICTED: similar to COP9 signalosome complex subunit 8 (Signalosome subunit 8) (SGN8) (JAB1-cont' ----------------------------------------------------------------------------------MPVAVMAEGAFSF----KKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPG--IYTTINAHQW---SETVQPIMEALRDATRRRAFALV----SQAYTSIIADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GILEQGWQADSTTRMVMPKKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAGALDVSFNRFIPLSEPAPVPPIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [209] 'gi|76614738|ref|XP 611709.2| PREDICTED: similar to COP9 signalosome complex subunit 8 (Signalosome subunit 8) (SGN8) (JAB1-cont' MCWDRGSQKPGQSSRAPRGRVRAAATPSPSQRRLMTQRNQRGACAGALGGAVGFYVIAGATPRGTQWGLVLLRRRGGGPAWKMPVAVMAESSFSF----KKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPG--VYSTINAHQW---SEAVQPIMEALRDATRRRAFALV----SQAYTSIIADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GILEQGWQADSTTRMVMPKKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAGALDVSFNRFIPLSEPAPVPPIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [291] 'gi|55725643|emb|CAH89603.1| hypothetical protein [Pongo pygmaeus] >gi|75042602|sp|Q5RF54|CSN8 PONPY COP9 signalosome complex su' ----------------------------------------------------------------------------------MPVAVMAESAFSF----KKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPG--IYTTINAHQW---SETVQPIMEALRDATRRRAFALV----SQAYTSIVADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GILEQGWQADSTTRMVLPRKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAGALDVSFNKFIPLSEPAPVPPIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [209] 'gi|5729779|ref|NP 006701.1| COP9 signalosome subunit 8 isoform 1 [Homo sapiens] >gi|55619467|ref|XP 516177.1| PREDICTED: simila' ----------------------------------------------------------------------------------MPVAVMAESAFSF----KKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPG--IYTTINAHQW---SETVQPIMEALRDATRRRAFALV----SQAYTSIIADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GILEQGWQADSTTRMVLPRKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAGALDVSFNKFIPLSEPAPVPPIP----NEQQLARLTDYVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [209] 'gi|72088396|ref|XP 791901.1| PREDICTED: similar to COP9 signalosome complex subunit 8 (Signalosome subunit 8) (SGN8) (JAB1-cont' -----------------------------------------------------------------------------------------MAAFDA----ISL-----------------------------------------VEQCEQQELE----------------------------APGGVASPE---LYKKLLALYLLQNDLNNAKFLWKRIPAAVKTADPELGYIWEIGQNMWQRDFSSSKLYSALNR-EW---SDVIKEIISALSDSIKQRLFQLV----GNTYTSIEDDQFASYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMSKEQAIN-------AVQEEGWSYNSTTQMILPKKP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPSREAPAP----SEQQIAQLTEFVA------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [187] 'gi|61877013|ref|XP 592083.1| PREDICTED: similar to COP9 signalosome complex subunit 8 (Signalosome subunit 8) (SGN8) (JAB1-cont' ----------------------------------------------------------------------------------MPVAVMAESSFSF----KKL-----------------------------------------LDQCENQELE----------------------------APGGIATPP---VYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQQIWQRDFPG--VYSTINAHQW---SEAVQPIMEALRDATRRRAFALV----SQAYTSIIADDFAAFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVEEAVK-------GILEQGWQADSTIRIVMPKKP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAGTLDVSFNRFISLSEPTPVPPIP----KEQQLARLTDYVA------------------------------------------------------------------------FLKN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [209] 'gi|48097910|ref|XP 391971.1| PREDICTED: similar to MGC80215 protein [Apis mellifera]' ---------------------------------------------------------------------------------------MVLS--EV----NKF-----------------------------------------LHELEKAELE----------------------------APGGVASSQ---TYAQLLAVYLYQNDLCNAKYLWKRIPTDLKSGNAELGQIWMVGQRMWQRDWPA--VHVALNA-EW---SEDVSDIMAALKDNVRERAITLI----SKAYSSLSLTVFASMT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLTLEEARR-------VAIERGWNVDGT--MVQPCKI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKEESNLVNEVCLTEDQLYKLTQFVS------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [187] 'gi|66819954|ref|XP 643634.1| hypothetical protein DDB0167123 [Dictyostelium discoideum] >gi|42733873|gb|AAS38790.1| similar to' --------------------------------------------------------------------------------MAFTEIANLISSKNF----KAI-----------------------------------------LDYCQRQEIE----------------------------SKNIDLIKS---YYGVYLLSYLINNDLINAKHLWKRIPNDFKQSNQQLKNIYTIIKSISQTNPTI--TYTSLS-INI---GDDYTPFITTLKENFQQRTFELI----SNAYSSITVNDCSSYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GISPEDTIK-------FTTSKCWEHDKASNTLKPVPI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKQSSELPTGNQQIRSLTSYVL------------------------------------------------------------------------FLEK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ST [196] lcl|10786_Cre_unnamed_protein_product ----------------------------------------------------------------------------MAAAGVMERVGAALAAGDY----GGV-----------------------------------------CGLLDEAELAALAPWGAAAEGGGGGPAAGGGAAGVAAGADGGAAAP--W-PAALHLLSHVYAGNLADARLLLKRMPEGVR-ADPQVAAAARLLQCAWQGSGEG--VWRALRGHPW---SGPAGQLVEALAERLRARQLDLV----EQAYSHISAARLAALCLSIIFWEGEEAGAHDVIQHPALLASLYMAGVGADVARNITELRLEGPLELPTLVTVALVLAGTLRHVRILALDTQLCGMGSYSFNNMHALHTTLRAAFPALEELNLPARACLRGLEAFAGSHLHTVRVMAESPGSLRMSHVRSLVQLPQLLQLDLDGGDWDACWSGDSDDDVWDDEKADSPAGAAELPLGDASDEETFR------EMEEEQVWDLWALRRLLVSPPPALERLRWLAEPRQEVGFAGGRIACVDLHGGADGPDLHRAAATLLPALAATGRRLPLLKVNYLVGYPADVISQLQPHTPFSRLLAATDRVELGHLSMVDGTAAEAAAALQAVVRARTCGPDGAASGGGAARLKEWLESLVARSPPPATAAAAAVAPGSPAGTAAAAEAPGEVKVSVCKEGADEDWTPVIHAVIRELWDDHLGSAPVMAMPTGTAAAAGQGLAARGAPEAGGDRQAAGSAATPAAPAAVMLAEVTAQQVLEQAAARMWDTAEAEAAATVAQAEAWMAYRTAYVADKSRYRHDMRAVRMYVLLRGPFVWQRTCGPAKAGGRGAARLKESGAAAAASPGSPADAAAGAPREWKVQRGSFAGW--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG [761] 'gi|42415369|gb|AAS15654.1| SD12355p [Drosophila melanogaster] >gi|78742340|ref|NP 723378.2| CG13383-PB, isoform B [Drosophila m' -----------------------------------------------------------------------------------------MHLNKY----SEV-----------------------------------------VERLENEEFEQ---------------------------VELGAE------VYQQLLAIYLYQNKLADAKLLWMRVPANLRD-DKELIQLNLLNIALQNNNYAD--FFKHIK-YEW---SERVKSPVEDLLNKQREELFKLM----GSAYMSIYQHNLLELS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LMSEDELKH-------ACAALNWTEELDGDRVILKPK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VQEAPPARGNDDQLLKLTEFVT------------------------------------------------------------------------FLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [182] 'gi|76155701|gb|AAX26985.2| SJCHGC05030 protein [Schistosoma japonicum]' ----------------------------------------------------------------------------------KAHLNSVLHKLAIMSEDDSA--------------------------------------------IDEQLAEMLAFELGLDTVNFDSKC-----------CPTSLANPSPTDFYLQYMGLYLIKSDIVSAKFLYKRMPPKIKE-QPSIKCLWNLGRLLWRNDVKS--FFFLSSQVLS---DPKHPDILIQMVKQIRDKQLDLITDLCGRAYSRICIEFLCDYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NVSSKDICD-------LFVNKGWEICSDGRFISRFGE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCENNKIRYSESDTSNNDLLSKLSELMC------------------------------------------------------------------------FMEN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H- [225] 'gi|83775429|dbj|BAE65549.1| unnamed protein product [Aspergillus oryzae]' ---------------------------------------------------------------------------------------------------------------------------------------------MDLPPLSKEQLSVVLKSSRSPTELYNILVEYEGEAYLMSTSDSNVSELLSL-FYSTFFFAHLLTDQIYEARAMTQRMPQELSQNDPSLQNCLTLLRAVWQRNYES--IYKILRELPW---PDFLRPAVESYETYFQEKTLKEV----SHAYEAIRPATAANYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLDTAAAEQGDPAVIQKFTAVGWVWDESTRLLHPKPI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PTAPEKDTRLYDEKPGRSDWLNEELRWLRNNRPPGPLNGGNV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [232] 'gi|70983448|ref|XP 747251.1| COP9 signalosome subunit 8 [Aspergillus fumigatus Af293] >gi|66844877|gb|EAL85213.1| COP9 signalos' ---------------------------------------------------------------------------------------------------------------------------------------------MDLPPLSREQLSTVLATASSSSALYETLSQYEGHACFLSTSNSEEAELLSL-FYSSFFFSHLLLDDIYEARAMTKRMPQDLAQNDATLQNCLRLLRAVWQRKYEY--VYKVLRDLPW---PEMLKPTVRNYELHFQEKTLKEV----SRAYEAIRPDAAANYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLDVTAAKQGDPAIISKFTACGWRWDEQNGLLYPQPI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITAREKIGHSSNGLSEVMALMGSHSG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [216] 'gi|89307047|gb|EAS05035.1| hypothetical protein TTHERM 00840040 [Tetrahymena thermophila SB210]' --------------------------------------------------------------------------------------------MSEHLGRSKEDYETLVVKEISKLPNNTQSIENIIKILEDLEENINTMCCSQMKQIENQLKNNIQYEIKQITIEEHSVT-----------------------LLQIQFLCYLISYDLENAKFFWARITNEKKQ-NQTLQEIHKILFVLWSGQQNA--AFQLIAQVNSNVNNKSISSLLHMLHSAVFQKILKEI----TLNYANLSIKEFQNLL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALNEQDTFK-------TIQKLNWKTDEQQFVYPDAKY-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LMDKEKFKQINEEQIDQITKLVS------------------------------------------------------------------------FLDSLQKKTIPVPYPFQERFDVLDGQYLVPKPPLKPLSAYNVFTLMYMRIIRENYPNEPTSVILKKLSSLWNDDEFMIDHKLEIYLKERYIQVKEELQTSDIATITQHVTYEWSQLTEEQKQEYQQKYKDNIVYFKTAISEYDNTFRIPMKQYKNIYNLFVIEQYQGKKIKFKSLEEHQKFTKQLQVMFNQLTPQEKQFYEQKKIQLDEQINQEAEKFKKYFDLSEQDYQDIQKLVKSQSKIKDINEDPQIAFM [489] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-193 224-226 246-264 285-288 294 304-495 504-510 521-524 532-810 820-1149; END; BEGIN MacClade; Version 4.0 87; LastModified -1037721217; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '10' '628' '1' all; EditorPosition '70' '-5' '1107' '1523'; TreeWindowPosition '46' '6' '1131' '1550'; ListWindow Characters closed Geneva '9' '50' '25' '273' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '52' '30' '1118' '1540'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '1064' '30' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '50' 001011001; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '256' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END;