#NEXUS 
[MacClade 4.08 registered to Mineko IWATA, NIBB]


BEGIN DATA;
	DIMENSIONS  NTAX=161 NCHAR=1548;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
	CHARSTATELABELS  
		656  K,
  657  N,  658  O,  659  X,  660  1.,  749  1.,  750  E,  751  N,
  752  D,  781  K,
  782  N,  783  O,  784  X,  785  2.,  894  2.,  895  E,  896  N,
  897  D,  1089  H,  1090  O,  1091  M,
  1092  E,  1093  O,  1157  E,  1158  N,  1159  D,		;

MATRIX
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'gi|15236418|ref|NP 192555.1| KNAT1 (BREVIPEDICELLUS 1); transcription factor [Arabidopsis thaliana] >gi|4689449|gb|AAD27897.1|'     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EYQHDNSTTPQ---------------------------------------------------------------------------------------------------------------------------------------------------------RVSFLYSPISSSNKNDNTSDTNNNNNNNNSSNYGPGYNNTNNNNHHHQHMLFPHMSSLLPQTTENCFRS---DHDQP-NNNNNPSVKSEASSSRINHYSMLMRAIHNTQEA-NNN-NNDNV-SDVE---------AMKAKIIAHP--------HYSTLLQAYLD-------------------------------CQK--IGAPP-DVVDRITAARQDFEARQ--Q---RSTPSVS------------ASSRD-P--EL------DQFM---------EAYCDMLVKYREELTRP----IQ----EAMEFIRRIES--------------------------------------------QLSMLCQSPIHILNN------------------------------------------------------------------PDGKSDN--MGS-SD-EEQENNSG--GETELPE--ID--------------------PR-AEDREL-KNHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKEARQKLLTWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLQH-----------------------------------------------PHHAA--------------LYMD-GHYMGDGP-YRLGP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [398]
'gi|19908861|gb|AAM03027.1| homeodomain protein KNAT1/BP [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EYQHDNSSTPQ---------------------------------------------------------------------------------------------------------------------------------------------------------RVSFLYSPISSSNKNDNTSDTNNNNNNNNSSNYGPGYNNTNNNNHHHQHMLFPHMSSLLPQTTENCFRS---DHDQPNNNNNNPSVKSEASSSRINHYSMLMRAIHNTQEANNNN-NNDNV-SDVE---------AMKAKIIAHP--------HYSTLLQAYLD-------------------------------CQK--IGAPP-DVVDRITAARQDFEARQ--Q---RSTPSVS------------ASSRD-P--EL------DQFM---------EAYCDMLVKYREELTRP----IQ----EAMEFIRRIES--------------------------------------------QLSMLCQSPIHILNN------------------------------------------------------------------PDGKSDN--MGS-SD-EEQENNSG--GETELPE--ID--------------------PR-AEDREL-KNHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKEARQKLLTWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLQH-----------------------------------------------PHHAA--------------LYMD-GHYMGDGP-YRLGP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [400]
'gi|19908859|gb|AAM03026.1| homeodomain protein KNAT1/BP [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EYQHDNSSTPQ---------------------------------------------------------------------------------------------------------------------------------------------------------RVSFLYSPISSSNKNDNTSDTNNNNNNNNSSNYGPGYNNTNNNNHHHQHMLFPHMSSLLPQTTDNCFRS---DHDQPNNNNNNPSVKSEASSSRINHYSMLMRAIHNTQEANNNN-NNDNV-SDVE---------AMKAKIIAHP--------HYSTLLQAYLD-------------------------------CQK--IGAPP-DVVDRITAARQDFEARQ--Q---RSTPSVS------------ASSRD-P--EL------DQFM---------EAYCDMLVKYREELTRP----IQ----EAMEFIRRIES--------------------------------------------QLSMLCQSPIHILNN------------------------------------------------------------------PDGKSDN--MGS-SD-EEQENNSG--GETELPE--ID--------------------PR-AEDREL-KNHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKEARQKLLTWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLQH-----------------------------------------------PHHAA--------------LYMD-GHYMGDGP-YRLGP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [400]
'gi|56236458|gb|AAV84585.1| knotted-like homeobox protein [Populus tomentosa]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--E---DYNQMSE----------NTTPRG--NFLYAS---Q------------------LLAPNSSPYGRTSSGSTVSNQQTQMPLNPFHLQS--------NDQCFQSDTHPIVKTEAST---SHAQ-------------------------------------------------KFHYP--LLRGY-----------------------QTIN--------------------------------------------------------------QQQQ-GSESS-SEVE---------AIKAKIIAHP--------QYSNLLEAYMD-------------------------------CQK--VGAPP-EVVARLAAARQEFESRQ--R---SFITSR-------------DNSKD-P--EL------DQFM---------EAYCDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMICH----------GPLRIFNS---------------------------------------------------------DDKSEG--VGS-SE-DDQDN---SGGETELPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLGSLK---QELSKKKKK--GKLPKEARQKLLSWWELHY-KWPYPS------------------ETEKVALAETTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLH------------------------------------------------PQN-AALYM----------D----GHYM-GDGH--YRL---------GP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [368]
'gi|55276122|gb|AAV49802.1| homeobox transcription factor KN3 [Populus balsamifera subsp. trichocarpa x Populus deltoides]'          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--E---DYNQMSE----------NTTPRG--NFLYAS---Q------------------LLAPNSSPYGRTSSGSTVSNQQTQMPLNPFHLQS--------NDQCFQSDTHPIVKTEAST---SHAQ-------------------------------------------------KFHYP--LLRGY-----------------------QTIN--------------------------------------------------------------QQQQ-GSESS-SEVE---------AIKAKIIAHP--------QYSNLMEAYMD-------------------------------CQK--VGAPP-EVVARLAAARQEFESRQ--R---SFITSR-------------DNSKD-P--EL------DQFM---------EAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMICH----------GPLRIFNS---------------------------------------------------------DDKSEG--VGS-SE-DDQDN---SGGETELPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLGSLK---QELSKKKKK--GKLPKEARQKLLSWWELHY-KWPYPS------------------ETEKVALAETTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLH------------------------------------------------PQN-AALYM----------D----GHSM-GDGH--YRL---------GP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [368]
'gi|1946220|emb|CAA96511.1| kn1-like protein [Malus x domestica] >gi|6016217|sp|O04135|KNAP2 MALDO Homeobox protein knotted-1-li'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--DYNNQMDHESS----------GGRGNF--LYASPNLGGN------------------YGRAASDH----QMGINTFHLQSSGGGGGGGSGD--------QCNFQSPGTHPINVKTEATTSQHGHQ-------------------------------------------------KFQYNNNNNS-HLVSSSRGHQPVIHQLQ------NNFDL--------------------------------------------------------------LNDD-HSLSS-NEVE---------AIKAKIIAHP--------QYSNLLEAYMD-------------------------------CQR--VGAPS-DVVARLSVARQEFEARQ--R---SSGTSR-------------ETSKD-P--EL------DQFM---------EAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMLGN------NNNAPPLRIFSP--------------------------------------------------------SEDKCEG--IGS-SE-EEQEN---SGGETEVPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSSLK---QELSKKKKK--GKLPKDARQKLLSWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLH------------------------------------------------PQN-AALYM----------D----GHYI-GDGH--YRL---------GP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [397]
'gi|1946218|emb|CAA96510.1| kn1-like protein [Malus x domestica] >gi|6016215|sp|O04134|KNAP1 MALDO Homeobox protein knotted-1-li'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--DYNNQMDHESS----------GGRGNF--LYASPNLGGN------------------YGRAASDH----QMGINTFHLQSSGGGGGGGSGD--------QCNFQSPGTHPINVKTEATTSQHGHP-------------------------------------------------KFQYNNNNNNHHLVSSSRGHQPVVHQLQ------HNLDL--------------------------------------------------------------QNDD-HSLSS-NEVE---------AIKAKIIAHP--------QYSNLVEAYMD-------------------------------CQR--VGAPS-DVVPRLSVARQEFEARQ--R---SSGTSR-------------ETSKD-P--EL------DQFM---------EAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMLGN------NNNAPPLRIFSP--------------------------------------------------------SEDKCEG--IGS-SE-DEQEN---SGGETEVPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSSLK---QELSKKKKK--GKLPKEARQKLLSWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLH------------------------------------------------PQN-AALYM----------D----GHYT-GDVH--YRL---------GP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [398]
'gi|3023974|sp|Q41330|KN1 LYCES Homeotic protein knotted-1 (TKN1) >gi|1256575|gb|AAC49251.1| Knotted 1 (TKn1) >gi|1588258|prf||2'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--NNNYNNHVSGE----------NSGGQR--GHFFYGGNQV------------------LGGA-APIYGR------GGDCYDPM----------------------------IVKTEGGGSTSHHNH-------------------------------------------------TFHYPSIIRN-H---------------H------HDSTE--------------------------------------------------------------TSGG-GAGAG-EVIE---------ALKAKIIAHP--------QCSNLLDAYMD-------------------------------CQK--VGAPP-EVAARLSAVRQEFEARQ--R---RSLTDR-------------DVSKD-P--EL------DQFM---------EAYYDMLVKYREELTRP----LQ----EAMEFMQKIEA--------------------------------------------QLNMLGN----------APVRIFNS---------------------------------------------------------EDKCEG--VGS-SE-EDQDN---SGGETELPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSSLK---QELSKKKKK--GKLPKDARQKLITWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLH------------------------------------------------PQSAAALYM----------E----GHYM-GEGP--FRL---------GQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [355]
'gi|33333546|gb|AAQ11889.1| knotted 2 [Nicotiana tabacum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L------------------LSSPNSSIYGRTSGGGGGGDCYDQS----------------------QAVVHPIVKTEGGSSISHHHH-------------------------------------------------TFQYPSIIRSGY---------------H------HQTVQ--------------------------------------------------------------NHHE-SESSG-SEVD---------ALKAKIIAHP--------QCSNLLDAYMD-------------------------------CQK--VGAPP-EVVARLSAVRQEFEVRQ--R---DSSTDR-------------DVSKD-P--EL------DQFM---------EAYYDMLVKYREELTRP----LH----EAMDFMRKIET--------------------------------------------QLNMLGN----------GPVRIFNS---------------------------------------------------------EDKCEG--VGS-SE-EEQDN---SGGETEIPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSSLK---QELSKKKKK--GKLPKDARQKLLSWWELHY-KWPYPS------------------ESEKVALAETTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMV-GLH------------------------------------------------PQNAAALYM----------E----GHYM-GEGP--FRL---------GQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [341]
'gi|33333548|gb|AAQ11890.1| knotted 3 [Nicotiana tabacum]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIPL------------------LASPNSSIYGRSS--GGGGDCYDQS----------------------QAVVHPIVKTEGGS--TSHHH-------------------------------------------------TFQYPSIIRSGY---------------H------HLTVQ--------------------------------------------------------------NHHE-SESSG-SEVD---------ALKAKIIAHP--------QCSNLLDAYMD-------------------------------CQK--VGAPP-EVVARLSAVRQEFEVRQ--R---DSSTDR-------------NIAKD-P--EL------DQFM---------EAYYDMLVKYREELTRP----LH----EAMDFMRKIET--------------------------------------------QLNMLGN----------GPVRIFNS---------------------------------------------------------EDNCEG--VGS-SE-EEQDN---SGGETEIPQ--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSSLK---QELSKKKKK--GKLPKDARQKLLSWWELHY-KWPYPS------------------ESEKVALAETTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLH------------------------------------------------PQNAAALYM----------E----GHYM-GEGP--FRL---------GQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [340]
'gi|20977646|gb|AAM28232.1| knotted-1-like protein 2 [Helianthus annuus]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--DYLGQNSSSSNTGTTSTTFLYGSGGVAPDTSCLYGRGGNESDPG-------------HGGFHHPDQYHHPMVKIETEKFHN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YPPS-MVNFH-NEDE---------ALKAKIISHP--------HYSNLLQAYMD-------------------------------CQK--VGAPP-EVVGRLTAVRQEYEARQ--R---ANLGCR-------------ENYKD-P--EL------DQFM---------EAYYDMLIKYKEELTRP----IQ----EAMEFMRRIES--------------------------------------------QLSTLTISSSSSSSPAGRIFISP----------------------------------------------------------DESKCEV--IGS-SD-EEQENT--SGGETEVAE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSSLK---QELSKKKKK--GKLPKEARQKLLSWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLH------------------------------------------------PQNVATA------------LYMG-DHHYMGDGPYRLGP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [358]
'gi|4589882|dbj|BAA76904.1| homeobox 20 [Nicotiana tabacum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--N---NYNQLGE----------NSSQRG--NNFLYGGIPL------------------LSSPNSSYLWKNKWRRRRSDCYDQS----------------------QAVVHPIVKTEGGSSTSHHHH-------------------------------------------------TFQYPSIIRSGY---------------H------HQTVQ--------------------------------------------------------------NHHE-SESSG-SEVD---------ALKAKIIAHP--------QCSNLLDAYMD-------------------------------CQK--VGAPP-EVVARLSAVRQEFEVRQ--R---DSSTDR-------------DVSKD-P--EL------DQFM---------EAYYDMLVKYREELTRP----LH----EAMDFMRKIET--------------------------------------------QLNML-----------------------------------------------------------------------------EDKCEG--VGS-SE-EEQDN---SGGETEIPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSSLK---QELSKKKKK--GKLPKDARQKLLSWWELHY-KWPYPS------------------ESEKVALAETTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFMVMD-GLH------------------------------------------------PQNAAALYM----------E----GHYM-GEGP--FRL---------GQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [356]
'gi|50918407|ref|XP 469600.1| homeobox 1 protein OSH1 [Oryza sativa (japonica cultivar-group)] >gi|41469276|gb|AAS07158.1| homeo'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EISHHFGVVGAS----GVHGG----------------------------------------HQHQHHHHPWGSS-LSAIVAPPPPPQLQQQ--------QTQAGGMAHTPLTLNTAA---------------------------------------------------------AAVGNPVLQLAN-GSLLDAC-GKAK----------------------------------------------------------------------------EASA-SASYA-ADVE---------AIKAKIISHP--------HYSSLLAAYLD-------------------------------CQK--VGAPP-EVAARLTAVAQDLELRQ--R---TALGVL-------------GAATE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNTLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKDARQQLLNWWELHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------D--EMQFVMMD-GYH------------------------------------------------PTNAAAFYMD--------------GHFINDGGLYRLG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [361]
'gi|1171924|sp|P46609|OSH1 ORYSA Homeobox protein OSH1 >gi|540536|dbj|BAA03959.1| homeobox protein [Oryza sativa (japonica culti'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EISHHFGVVGAS----GVHGG----------------------------------------HQHQHHHHPWGSS-LSAIVAPPPPPQLQQQ--------QTQAGGMAHTPLTLNTAA---------------------------------------------------------AAVGNPVLQLAN-GSLLDAC-GKAK----------------------------------------------------------------------------EASA-SASYA-PDVE---------AIKAKIISHP--------HYSSLLAAYLD-------------------------------CQK--VGAPP-EVAARLTAVAQDLELRQ--R---TALGVL-------------GAATE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNTLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKDARQQLLNWWELHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------D--EMQFVMMD-GYH------------------------------------------------PTNAAAFYMD--------------GHFINDGGLYRLG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [361]
'gi|3024577|sp|Q41853|RSH1 MAIZE Homeobox protein rough sheath 1 >gi|1008879|gb|AAA86287.1| RS1 gene product'                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD--Q-SFGNLGAGA----------GSSS----GGSNSKA-AA------------------TAVSSSSFLQL-PLST---AS------------P--------AYYGAPLALLHH-AAAAPSSSQQHQQ-------------------------------------------------QQHH-------H---------------H------YARH------------------------------------------------------------------G-AEMSA-AEAE---------AIKAKIVAHP--------QYSALLAAYLD-------------------------------CQK--VGAPP-DVLERLTAMAAKLDASA---------AGR-------------HEPRD-P--EL------DQFM---------EAYCNMLVKYREELTRP----ID----EAMEFLKRVEA--------------------------------------------QLDCISG------GGGSSSARLSLA--------------------------------------------------------DGK-SEG--VGS-SE-DDMDP---NGRENDPPE--ID--------------------PR-AEDKEL-KYQLL-----------KKYS----GYLSSLR---QEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMPFVMME-GFH------------------------------------------------PQNAAALYM----------D----GPFM-RDGM--YRL---------GS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [351]
'gi|57157677|dbj|BAD83803.1| KN1 homeobox protein [Triticum aestivum] >gi|57157675|dbj|BAD83802.1| KN1 homeobox protein [Triticu'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EIGHHFG-LGATA------------------------------------------------HGQHHSQLPWGSSPLSAVIAPPPQQQQQ-Q--------QQSAGYLAHSPLSLNTAPPSGSHGGG-------------------------------------------------SGCSNPVLQLAN-GSLLEAC-AKAA----------------------------------------------------------------------------KEPS-SSSYA-ADVE---------AIKAKIISHP--------HYSSLLAAYLD-------------------------------CQK--VGAPP-EVLARLTAVAQDLELRQ--R---TALGSL-------------GTATE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKDARQQLLSWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------D--EMQFVMMD-AYH------------------------------------------------PPNA-AFYMD--------------GHFVNDSGLYRFG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [363]
'gi|57157673|dbj|BAD83801.1| KN1 homeobox protein [Triticum aestivum] >gi|6942297|gb|AAF32398.1| KNOTTED-1-like homeobox protein'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EIGHHFG-LGATA------------------------------------------------HGQHHSQLPWGSSPLSAVIAPPP-QQQQ-Q--------QQSAGYLAHSPLSLNTAPPSGSHGGG-------------------------------------------------TGCSNPVLQLAN-GSLLEAC-AKAA----------------------------------------------------------------------------KEPS-SSSYA-ADVE---------AIKAKIISHP--------HYSSLLAAYLD-------------------------------CQK--VGAPP-EVLARLTAVAQDLELRQ--R---TALGSF-------------GTATE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKDARQQLLSWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------D--EMQFVMMD-AYH------------------------------------------------PPNA-AFYMD--------------GHFVNDSGLYRFG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [362]
'gi|793847|emb|CAA58503.1| Knox3 [Hordeum vulgare] >gi|3024086|sp|Q43484|KNOX3 HORVU Homeobox protein KNOX3 (Hooded protein)'        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EIGHHFG-LGATA------------------------------------------------HGQHHSQLPWGSSPLSAVISPPPQQQQQHQ--------QQSAGYLAHSPLSLNTAPPGVSHGGG-------------------------------------------------SGCSNPVLQLAN-GSLLEAC-AKAA----------------------------------------------------------------------------KEPS-SSSYA-ADVE---------AIKAKIISHP--------HYSSLLAAYLD-------------------------------CQK--VGAPP-EVSARLTAVAQDLELRQ--R---TALGGL-------------GTATE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--TGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKEARQQLLSWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPT-------------------------------------------------------------D--EMQFVMMD-AYH------------------------------------------------PPNA-AFYMD--------------GHFVNDSGLYRFG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [364]
'gi|50933957|ref|XP 476506.1| homeobox gene [Oryza sativa (japonica cultivar-group)] >gi|34395067|dbj|BAC84729.1| homeobox gene'     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD--Q-SFGNLGGGG----------GAGG-------------S------------------GKAAASSFLQL-PLSTAAAAT---------------------AYYGTPLALHQ--AAAAAGPSQYHGH-------------------------------------------------GHPHH---GGGH---------------H------HSKHG--------------------------------------------------------------GAGG-GEISA-AEAE---------SIKAKIMAHP--------QYSALLAAYLD-------------------------------CQK--VGAPP-EVLERLTATAAKLDARP---------PGR-------------HDARD-P--EL------DQFM---------EAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAGGAH---GGGAGSARLLLA---------------------------------------------------------DGKSEC--VGS-SE-DDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KFQLL-----------KKYS----GYLSSLR---QEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMPFVMME-GFH------------------------------------------------PQNAAALYM----------D----GPFM-ADGM--YRL---------GS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [355]
'gi|2522484|gb|AAB81079.1| knotted class 1 homeodomain protein [Hordeum vulgare]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EIGHHFG-LGATA------------------------------------------------HGQHHSQLPWGSSPLSAVISPPPQQQQQHQ--------QQSAGYLAHSPLSLNTAPPGVSHGGG-------------------------------------------------SGCSNPVLQLAN-GSLLEAC-AKAA----------------------------------------------------------------------------KEPS-SSSYA-ADVE---------AIKAKIISHP--------HHSSLLAAYLD-------------------------------CQK--VGAPP-EVSARLTAVAQDLELRQ--R---TALGGL-------------GTATE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSISVR-----------------------------------------------------------------------SLRNILS--TGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKEARQQLLSWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPT-------------------------------------------------------------D--EMQFVMMD-AYH------------------------------------------------PPNA-AFYMD--------------GHFVNDSGLYRFG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [364]
'gi|4887608|dbj|BAA77817.1| homeobox gene [Oryza sativa (japonica cultivar-group)]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD--Q-SFGNLGGGG----------GAGG-------------S------------------GKAAASSFLQL-PLSTAAAAT---------------------AYYGTPLALHQ--AAAAAGPSQYHGH-------------------------------------------------GHPHH---GGGH---------------H------HSKHG--------------------------------------------------------------GAGG-GEISA-AEAE---------SIKAKIMAHP--------QYSALLAAYLD-------------------------------CQK--VGAPP-EVLERLTATAAKLDARP---------PGR-------------HDARD-P--EL------DQFM---------EAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAGGAH---GGGAGSARLLLA---------------------------------------------------------DGKSEC--VGS-SE-DDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KFQLL-----------KKYS----GYLSSLR---QEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMPFVMME-GFP------------------------------------------------PQNAAALYM----------D----GPFM-ADGM--YRL---------GS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [355]
'gi|2935575|gb|AAC32818.1| KNOX class homeodomain protein [Oryza sativa]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD--Q-SFGNL-GGG----------GAGG-------------S------------------GKAAASSFLQL-PLSTAAAAT---------------------AYYGTPLALHQ--AAAAAGPSQYHGH-------------------------------------------------GHPHH---GGGH---------------H------HSKHG--------------------------------------------------------------GAGG-GEISA-AEAE---------SIKAKIMAHP--------QYSALLAAYLD-------------------------------CQK--VGAPP-EVLERLTATAAKLDARP---------PGR-------------HDARD-P--EL------DQFM---------EAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAGGGHGGSGGGAGSARLLLA---------------------------------------------------------DGKSEC--VGS-SE-DDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KFQLL-----------KKYS----GYLSSLR---QEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMPFVMME-GFH------------------------------------------------PQNAAALYM----------D----GPFM-ADGM--YRL---------GS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [357]
'gi|33333531|gb|AAQ11882.1| knotted 1 [Hordeum vulgare]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD--RSSFGNLAAGG----------GGSS--------------------------------SSKSSPSFLQLQPLSTTTVAAGPGP------MGG--------TYYGTPLALHQG-AAAAGSSQSPYQ-----------------------------------------------------F-------H---------------H------HKSS------------------------------------------------------------------V-GEISQ-AEAE---------AIKTKIMAHP--------QYTALLVAYLD-------------------------------CQK--VGAPP-DVLERLTAMAAKLDAHT---------PGRL------------HEARD-P--EL------DQFM---------EAYCNMLAKYREELTRP----IE----EAMEFLKRVEA--------------------------------------------QLDSIT-------GGGHGSAPLSLA--------------------------------------------------------AGK-YEG--VGS-SE-DDMDA---SGRENEPPE--ID--------------------PR-AEDKDL-KYQLL-----------KKYS----GYLSSLR---QEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMPFVMME-GFH------------------------------------------------PQNAAALYM----------D----GQFM-ADGM--YRL---------GS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [349]
'gi|32351469|gb|AAP76320.1| homeobox transcription factor GNARLY1 [Zea mays]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD--Q-NFGNLGTGA----------GSSGGC--GGSNSNSKAV------------------AAVSSSSFLQL-PLSTAAAAS------------P--------AYYGAPLALLHHGTTAGPSSS---QQ-------------------------------------------------QQHQ-------S---------------P------YAKH------------------------------------------------------------------G-AEMSA-AEAD---------AIKAKIVAHP--------QYSALLAAYLD-------------------------------CQK--VGAPP-DLLERLTAMAAKLDARP---------PGR-------------HGPRD-P--EL------DQFM---------EAYCNMLVKYREELTRP----ID----EAMEFLKRVEA--------------------------------------------QLDSIAG------GGSSSSARLSLA--------------------------------------------------------DGKSSEG--AGS-SEDDDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KYQLL-----------KKYS----GYLSSLR---QEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAEATGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMPFVMME-GFH------------------------------------------------PQTAAALYL----------DG---GAFM-ADGMTTYRL---------GS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [360]
'gi|85543304|gb|ABC71532.1| KNOTTED1-like homeodomain protein [Pharus lappulaceus]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YGVLGAGA------------------------------------------------STTTHHHHPWASS-LSAVVAPPPPLPPT--------------------PLTLTTTPT-----AT-------------------------------------------------TTTNNPVLQLAN-GNLLDACGGKAK----------------------------------------------------------------------------DPSS-SSSYA-ADVE---------AIKAKIISHP--------HYSSLLAAYLD-------------------------------CQK--VGAPP-EVATRLTAVAHELEARQ--R---TALGGL-------------GAAME-P--EL------DQFM---------EAYHEMLVKYREELARP----LQ----EAMEFLRKVEL--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHQLL-----------KKYS----GYLSTLK---QELSKKKKK--GKLPKDARQQLLNWWELHY-KWPYPS------------------ESQKMALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------D--EMQFVMMD-GYH------------------------------------------------PTNA-AFYMD--------------GHFINDSG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [336]
'gi|85543302|gb|ABC71531.1| KNOTTED1-like homeodomain protein [Leersia virginica]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-LGT----------SGHG---------GHHHH------------------HQGHQQQQQQHHPWASS-HSAVVAPPPPQTQQ----------QSQAVTMAHSPLTLSTAAA-----AA-------------------------------------------------AAAGVPVLQLAN-GNLMDACGGSGKAK---------EAS--------------------------------------------------------------ASAS-ASFAA-VNVE---------AIKAKIISHP--------HYSSLLAAYLD-------------------------------CQK--VGAPP-EVAARLAAVAQDLELRQ--R---TALGGL-------------GAATE-P--EL------DQFM---------EAYQEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNTLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------NKYS----GYLSSLK---QELSKKKKK--GELPKDARQQLLSWWELHC-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------D--EMQFVMMD-GYH------------------------------------------------PTN--AFYM----------D----GHFINVSG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [360]
'gi|4099828|gb|AAD00692.1| homeobox transcription factor SKN2 [Picea mariana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKLFHSD---ME--HLN-AAAAQASSSLYGVSMAEYGDVGVSSMMALMTQHEP---------------------------------------------------------------HERDSILTTSMPSSFSSFHGHAECLLSAAMFQAS----------------------QGDHKLKRQPEMD-QLVSEQAVMSDSSMPSVKTEGCSSLRNQFEIRREQTGNCYTDQSSNAPVSPLVTSLVPQ-A---GG-EARMITSLE---------------------------ADSS-HFSGG-NEAE---------AIKAKILAHP--------QYPSLLGAYID-------------------------------CQK--IGAPP-EVVARLDALTHEYENQQ--H---RTTV---------------SIGMD-P--EL------DQFM---------EAYCEMLTKYHEELTKP----FK----EAMSFLKKIEA--------------------------------------------QLNSLSKGTIRISPSAEND-----------------------------------------------------------------------EKTEGGASSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KDHLL-----------RKYS----GYLSSLK---QEFMKKKKK--GKLPKDARQKLLDWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQLMAMD-GQSP-----------------------------------------------HGATLYVERHLMTEGYHLDC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [442]
'gi|3928843|gb|AAC84001.1| homeobox protein [Picea abies]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--HLN-AAAAQASSSLYGVSMAEYGDVGVSSMMALMTQHEP---------------------------------------------------------------HERDSILTTSMPSSFSSFHGHAECLLSAAMFQAS----------------------QGDHKLKRQPEMD-QLVSEQAVMSDSSMPSVKTEGCSSLRNQFEIRREQTGNCYTDQSSNAPVSPLVTSLVPQ-A---GG-EARMITSLE---------------------------ADSS-HFSGG-KEAE---------AIKAKILAHP--------QYPSLLGAYID-------------------------------CQK--IGAPP-EVVARLDALTHEYENQQ--H---RTTV---------------SIGMD-P--EL------DQFM---------EAYCEMLTKYHEELTKP----FK----EAMSFLKKIEA--------------------------------------------QLNSLSKGTIRISPSAEND-----------------------------------------------------------------------EKTEGGASSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KDHLL-----------RKYS----GYLSSLK---QEFMKKKKK--GKLPKDARQKLLDWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQLMAMD-GQSP-----------------------------------------------HGATLYVERHLMTEGYHLDC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [434]
'gi|85543300|gb|ABC71530.1| KNOTTED1 homeodomain protein [Lithachne humilis]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-LGAS----SHGHG----------------------------------------HHHHHHHHPWGSS-LSAVVAPPPQPPSA-----------GAGAGMPNTPLTLNTAPT-PGGNGG-------------------------------------------------GGCGNPVLQLAN-GSLLDAC-AKAK----------------------------------------------------------------------------EPSAPSSSYA-ADVE---------AIKAKIISHP--------HYSSLLAAYLD-------------------------------CQK--VGAPP-EVAARLTALAQDLELRQ--R---TSLSGL-------------GAATE-P--EL------DQFM---------EAYHEMLMKYREELTRP----LQ----EAMEFLRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------PLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------AH-GVDQEL-KHQLL-----------RKYS----GYLSSLK---QELSKKKKK--GKLPKDARQQLLNWWDMHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------D--EMQFVMMD-GYH------------------------------------------------PTN--ATWTA--------------ASSTTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [350]
'gi|32351475|gb|AAP76321.1| homeobox transcription factor KNOTTED1 [Zea mays] >gi|22351|emb|CAA43605.1| Kn1 [Zea mays] >gi|30267'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--EITQHFG-VGASSHGHGHGQH----------------------------------------HHHHHHHHPWASS-LSAVVAPLPPQPPS-----------------AGLPLTLNTVAA---TGNS-------------------------------------------------GGSGNPVLQLANGGGLLDAC-VKAK----------------------------------------------------------------------------EPSS-SSPYA-GDVE---------AIKAKIISHP--------HYYSLLTAYLE-------------------------------CNK--VGAPP-EVSARLTEIAQEVEARQ--R---TALGGL-------------AAATE-P--EL------DQFM---------EAYHEMLVKFREELTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKEARQQLLSWWDQHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------E--EMHHLMMD-GYH------------------------------------------------TTN--AFYMD--------------GHFINDGGLYRLG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [359]
'gi|26023937|gb|AAN77690.1| KNOTTED1-like homeodomain protein 2 [Picea abies]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRPCQGANKFEPANAHIGGG---------------------------GAGHF-VMEQFI--PEQAVISDSSISSVKTEVCSGSGGTGVPGQFELIRRKE----EGRC-ARAYAEPSFVV---TPLVTSLPPQQQE---------------ARMVTSLAVDMDSSC-SCKPI-EA-D---------AMKAKIIAHV--------HYPRLVAAYID-------------------------------CQK--VGAPP-DVVSELDELSQKCHAQQ--C---VATI---------------SIGAD-P--EL------DQFM---------EAYCEMFIKYQEELTKP----FK----EAMAFLKKIEN--------------------------------------------QLGALTKGTIRTSS-------------------------------------------------------------------LDQGDERGDGAASSEEEDGSG-----GEVEFHE--VD--------------------PH-AEDREL-KDQLL-----------RKYS----GYLSSLK---QEFLKKKKK--GKLPKEARQKLLDWWTRNY-KWPYPS------------------ESQKIALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--EMQFVVMD-SPN------------------------------------------------PHNAAFFLE---------------GHLRTDGTAFSMDC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [383]
'gi|55669503|gb|AAV54619.1| homeobox transcription factor KN2 [Pinus taeda]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--HLN-AAAAQASSSLYGVSMSEYGDVGVSSMMALMTQHEP---------------------------------------------------------------HESESTMTTSMPSSFSSFHGHAECLLSAAMFQAS----------------------QGDHKLKRQHGMD-QLVSEQAVMSDSSMPSVKTEGCSSLRNQFEIRREQSGNCYADQSSNA---PLVTSIASQ-A---GGVAARMITSLE---------------------------ADSP-HF----NEAD---------AIKSKILAHP--------QYPNLLGAYID-------------------------------CQK--IGAPP-EVASRLDALSHEYENQQ--H---RSSL---------------SIGMD-P--EL------DQFM---------EAYCEMLTKYHEELTKP----FK----EAMSFLKKIEA--------------------------------------------QLNSLGKGTIRISPSAEND-----------------------------------------------------------------------EKTEGGASSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KDHLL-----------RKYS----GYLSSLK---QEFMKKKKK--GKLPKDARQKLLDWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQLMAMD-GQSP-----------------------------------------------HGATMYVERHLMTEGYHLDC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [429]
'gi|85543290|gb|ABC71525.1| KNOTTED1 homeodomain protein [Sorghum bicolor]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-VGASSHSHGHGHG-----------------------------------------QHHHHHHPWASS-LSAVVAPPPQQPPT-----------------AGLPLTLNTVAA---TGNS-------------------------------------------------GASGNPVLQLANGGSLLDAC-VNVKAKG-------------------------------------------------------------------------EPSS-SSPYA-GDLE---------AIKAKIISHP--------HYYSLLAAYLE-------------------------------CKK--VGAPP-DVSARLTAMAQELEARQ--R---TALSGL-------------GAATE-P--EL------DQFM---------EAYHEMLVKFKEELTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------VH-GVDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKMKK--GKLPREARQQHLSWWDLHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------E--EMHHLMMD-GYY------------------------------------------------TN---TFFMD--------------GHFINDGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [348]
'gi|85543296|gb|ABC71528.1| KNOTTED1 homeodomain protein [Setaria italica]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-VGASG---GHGHV----------------------------------------QDHLHHHHPWGSS-LSAVVAPPPQTPPS-----------------AGLPLTLNTAAT---GNSG-------------------------------------------------GAGGNPVLQLANGGGLLDAC-VKAK----------------------------------------------------------------------------EPSS-SSPYA-GDVD---------AIRAKIISHP--------HYYSLLAAYLE-------------------------------CQK--VGAPP-EVSARLTAMAQELEARQ--R---TALGGL-------------GAATE-P--EL------DQFM---------EAYHEMLVKFREELTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETEIPE--VD--------------------AH-GEDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKKKK--GKLPKEARQHLLSWRDLHY-KWPYPS------------------ETQKVALAESTGLDLKQIINWFINQRKRHWKPS-------------------------------------------------------------E--EMHHLMMD-GYH------------------------------------------------TTG--AFYMD--------------GHFINDSG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [344]
'gi|85543298|gb|ABC71529.1| KNOTTED1 homeodomain protein [Chasmanthium latifolium]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-VGA------SGHS----------------------------------------QQQQQHHHPWVSA-LSAVVA----PAPS-----------------AGLPLTLNTAAT------G-------------------------------------------------SSGGNPVLQLANGGSLLDAC-VKAK----------------------------------------------------------------------------ELSS-SSPYA-GDVD---------AIKAKIISHP--------HYYSLLAAYLE-------------------------------CQK--VGAPP-EVSARLTAMAQELEARQ--R---TAFGGL-------------GNATE-P--EL------DQFM---------EAYHEMLVKFREELTRP----LQ----EALEFMRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSSLK---QELSKKKKK--GTLPKEARQQLLSWWDLHY-KWPYPS------------------ETQKVALAESTGLNLKQINNWFINQRKRHWKPS-------------------------------------------------------------E--EMHHLMMD-GYH------------------------------------------------TTN--AFYMD--------------GTSSTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [334]
'gi|85543292|gb|ABC71526.1| KNOTTED1 homeodomain protein [Panicum miliaceum]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YG-LGAS----GHGHG----------------------------------------QHHHYHHHPWGSS-LSAVVAPPPQPPPS-----------------AVLPLTLNTAATLNSGANG-------------------------------------------------GAGGNPVLQLAHGGSLLDAC-IKAK----------------------------------------------------------------------------EPSS-SSPYA-GDVG---------AIKAKIISHP--------HYHSLLAAYLE-------------------------------CQK--VGAPP-EVSARLTAMAQELEARQ--R---TALGGL-------------GAATE-P--EL------DQFM---------EAYHEMLVKFREELTRP----LQ----EAMEFMRRVES--------------------------------------------QLSSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------AH-GVDQEL-KHHLL-----------KMYS----GYLSSLK---QELSKKKKK--GKLPKEARQQLLGWWDLHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWKPS-------------------------------------------------------------E--EMHHLMMD-GYH------------------------------------------------TTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [334]
'gi|55669505|gb|AAV54620.1| homeobox transcription factor KN3 [Pinus taeda]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--HMNTTAQSSSSLYGVHMVEYGGDVGVG--SMMALMTEHH------------------PESESIMT--SIPIPSS-YSSYS----HGHGHGHGHGHGHGQSECLLSAAA--MFQTSRPCQGSNKFEPANAHIGGGGG----------------------GGRGAGHF-VMEQFI--PEQAVISDSSISSVKTEVCSGSG-----GQFELIRRKE----EGRC-GRAYAEPSFVV---TPLVTSLPPQQQE---------------GRMVTSLAVDMDSSC-SCKPN-EA-D---------AMRAKIIAHV--------HYPRLVAAYID-------------------------------CQK--VGAPP-EVVLELDDLSHKCQTQH--C---VPTI---------------SVGAD-P--EL------DQFM---------EAYCEMFIKYQEELTKP----FK----EAMAFLKKIEN--------------------------------------------QLGTLTKGTIRTSS-------------------------------------------------------------------LDQGDERGDGAASSEEEDGSG-----GEVEFHE--VD--------------------PH-AEDREL-KDQLL-----------RKYS----GYLSSLK---QEFLKKKKK--GKLPKEARQKLLDWWTRNY-KWPYPS------------------ESQKIALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--EMQFVVMD-SPN------------------------------------------------PHNAAFFLE---------------GHLRTDGTAFSMDC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [470]
'gi|4099826|gb|AAD00691.1| homeobox transcription factor SKN1 [Picea mariana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--HLN-TAAAQASSSLYGVGMAEYGDAGVSSMMALITQHEP---------------------------------------------------------------HDSESIMSTRMPSSFSSFHGHADCLLSAAMFQAS----------------------QGDHKLKRQPGMD-QLVSEQAVMSDSSMPSVKTEVCSGLRNQFEFHREQTGNCYTDQSPNTPVNPLVTSLASQ-A---RG-EAQMIPSLD---------------------------ANSP-HFNVD-NEEY---------AIKSKILAHP--------QYPSLLGAYID-------------------------------CQK--IGAPP-EAVARLDALTHEYQNQQ--R---R-TV---------------SIGMD-P--EL------DQFM---------EAYCEILTKYHEELAKP----FK----EAMTFLMKIEA--------------------------------------------QFNSLGKGTIRISPPAEND-----------------------------------------------------------------------EKTEGGGSSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KDHLL-----------RRYS----GYLSSLK---QEFMKKKKK--GKLPKDARQKLLDWWSLHD-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMHFMVMN-SHSP-----------------------------------------------HSAALYVERHLMTEGYHLDC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [433]
'gi|55669501|gb|AAV54618.1| homeobox transcription factor KN1 [Pinus taeda]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--RLN-TAAAQASSSLYGVNMAEYGDAGVSSMMGLITQHEP---------------------------------------------------------------EQSENIMSTRIPSSFSSFHGHADCLLSAAMFQGS----------------------QGDHKLNPQPGMNQQLVSEQSIMSDSSMPLVKTKACSGLRNQFEFHREQPGNCYTDQSSNIPLSPIVTSLASQ-A---RG-EARMIPSLD---------------------------ANSA-HFNVD-NEEH---------AIKSKILAHP--------QYPSLLGAYID-------------------------------CQK--IGAPP-EAVARLDALTREHQDPQ--R---R-TV---------------SIGMD-P--EL------DQFM---------EAYCEILTKYHEELAKP----FK----EAMLFLKKIET--------------------------------------------QFNSLGKGTIRISSPADDD-----------------------------------------------------------------------EKTEGGGSSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KNHLL-----------RKYC----GYLSSLK---QEFMKKKKK--GKLPKDARQKLLDWWSLHD-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMHFMVMN-SHSP-----------------------------------------------HSAALYVERHMMTEGYHLDC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [434]
'gi|26023939|gb|AAN77691.1| KNOTTED1-like homeodomain protein 3 [Picea abies]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--HLN-TAAAQASSSLYGVGMAEYGDAGVSSMMALITQHEP---------------------------------------------------------------HDSESIMSTRMPSSFSSFHGHADCLLSAAMFQAS----------------------QGDHKLKRQPGMD-QLVSEQAGMSDSSMPSVKTEVGSGLRNQLEFHREQTGNGYTDQSSNTPVNPLVTSLASQ-A---RG-EAQMIPSWD---------------------------ANSP-HFNVD-NEEY---------AIKSKILAHP--------QYPSLLGAYID-------------------------------CQK--IGAPP-EAVARLDALTREYQNQQ--R---R-TV---------------SIGMD-P--EL------DQFM---------EAYCEILTKYHEELAKP----FK----EAMTFLMKIEA--------------------------------------------QFNSLGKGTIRISPPAEND-----------------------------------------------------------------------KKTEGGGSSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KDHLL-----------RRYS----GYLSSLK---QEFMKKKKK--GKLPKDARQKLLDWWSLHD-KWSYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMHFMVMN-SHSP-----------------------------------------------HSAALYVERHLMTEGYHLDC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [433]
'gi|28564574|dbj|BAC57683.1| KNOX class homeodomain protein [Oryza sativa (japonica cultivar-group)]'                                --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD--Q-SFGNLGGGG----------GAGG-------------S------------------GKAAASSFLQL-PLSTAAAAT---------------------AYYGTPLALHQ--AAAAAGPSQYHGH-------------------------------------------------GHPHH---GGGH---------------H------HSKHG--------------------------------------------------------------GAGG-GEISA-AEAE---------SIKAKIMAHP--------QYSALLAAYLD-------------------------------CQK--VGAPP-EVLERLTATAAKLDARP---------PGR-------------HDARD-P--EL------DQFM---------EAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAGGAH---GGGAGSARLLLAGKSTNHPSPSSCSRLRFYFYLHTCSFCFFSSAAAAAADDDDLVVGGDGGGGGGGGLPHCKSEC--VGS-SE-DDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KFQLL-----------KKYS----GYLSSLR---QEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMPFVMME-GFH------------------------------------------------PQNAAALYM----------D----GPFM-ADGM--YRL---------GS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [412]
'gi|55669507|gb|AAV54621.1| homeobox transcription factor KN4 [Picea mariana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--DMNMNIGGAATFYGVNMNEYGDTGVGSMMALMTEQE---------------------PGNESIMSTMTMTIPSSAFSSYSHA---------------GQVEGLLSAAAATMFNQGGHHHHQKHLV--------------------------------------GGHFPPEQLVMNEQAAVISDSSLSSVKTEVCS--------------NQLEFHRKTSGGGRSCCPQPSLVV----------------RAPQQQQQHHHHQEASRMVTSLEVDIDSAC-SSNPN-DSID---------TLKTKIACHP--------HYPQLLAAYMD-------------------------------CQK--IGAPP-EVVTVLDEISQENQLGRHLATM--------------------DIGVD-P--EL------DQFM---------EAYCQMLIKYHLELSKP----FK----EARTFLNKMET--------------------------------------------QLNCLSKGAIRSFPSGYCDEREDG------------------------------------------------------------------GGS-SE-EEFSC-----GEIEVHE--VD--------------------PR-AEDREL-KDQLL-----------RKYS----GYFSSLK---QEFLKKKKK--GKLPKEARQKLLEWWNVHY-KWPYPS------------------ETDKVSLAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-SLN------------------------------------------------PHGASF--------------------------YMDGADC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [438]
'gi|85543294|gb|ABC71527.1| KNOTTED1 homeodomain protein [Pennisetum glaucum]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YG-VGASGGS-GHGHG------------------------------------QQQQQHHHHHHHLWGSS-LSAVVAPPPQPPPS-----------------AGLPLTLNTAAA---GNSC-------------------------------------------------GAGGNPVLQLANGGGLLDAC-VKAK----------------------------------------------------------------------------EPSS-SSPYA-GDVE---------AIKAKIIFHP--------HYYSLLAAYLE-------------------------------CQK--VGAPP-EVSARLTAMAQELEARQ--R---TALGGL-------------GAATE-P--EL------DQFM---------EAYHEMLVKFREEPTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETEIPE--ID--------------------AH-GVDQEL-KHHLL-----------RKYS----GYLSSLK---QELSKKKKK--GKLPKEARQQLLGWWEAHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWKP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [321]
'gi|7940290|gb|AAF70849.1| F2401.9 [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--SGSNSTS----------------------CPMAFAGDNS------------------DGPMCPMMMMMPPIMTSH-QHHGHDHQHQ-QQEHDGYAYQSHHQQSSSLFLQSLAPP-QGTKNKVASS--------------------------------------------SSPSSCAPAYSLMEIHH----------------------NEIVA--------------------------------------------------------------GGIN-PCSSS-SSSA---------SVKAKIMAHP--------HYHRLLAAYVN-------------------------------CQK--VGAPP-EVVARLEEACSSAAAAA--A---SMGPTG-------------CLGED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSLSSPSSFS----------------------------------------------------------------------AIDRNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-ATH------------------------------------------------PH-----------------------HYFMD--NVLGNPFPMDHISSTML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [377]
'gi|15220767|ref|NP 176426.1| STM (SHOOT MERISTEMLESS); transcription factor [Arabidopsis thaliana] >gi|20141647|sp|Q38874|STM A'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--SGSNSTS----------------------CPMAFAGDNS------------------DGPMCPMMMMMPPIMTSH-QHHGHDHQHQ-QQEHDGYAYQSHHQQSSSLFLQSLAPP-QGTKNKVASS--------------------------------------------SSPSSCAPAYSLMEIHH----------------------NEIVA--------------------------------------------------------------GGIN-PCSSS-SSSA---------SVKAKIMAHP--------HYHRLLAAYVN-------------------------------CQK--VGAPP-EVVARLEEACSSAAAAA--A---SMGPTG-------------CLGED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSLSSPSSFSGY-----------------------------------------------------------------GETAIDRNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-ATH------------------------------------------------PH-----------------------HYFMD--NVLGNPFPMDHISSTML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [382]
'gi|1167916|gb|AAC49148.1| class I knotted-like homeodomain containing protein; Method: conceptual translation supplied by autho'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--SGSNSTS----------------------CPMAFAGDNS------------------DGPMCPMMMMMPPIMTSH-QHHGHDHQHQ-QQEHDGYAYQSHHQQSSSLFLQSLAPP-QGTKNKVASS--------------------------------------------SSPSSCAPAYSLMEIHH----------------------NEIVA--------------------------------------------------------------GGIN-PCSSF-SSSA---------SVKAKIMAHP--------HYHRLLAAYVN-------------------------------CQK--VGAPP-EVVARLEEACSSAAAAA--A---SMGPTG-------------CLGED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSLSSPSSFSGY-----------------------------------------------------------------GETAIDRNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-ATH------------------------------------------------PH-----------------------HYFMD--NVLDNPFPMDHISSTML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [382]
'gi|19424064|gb|AAL87330.1| putative homeobox protein [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QSHHQQSSSLFLQSLAPP-QGTKNKVASS--------------------------------------------SSPSSCAPAYSLMEIHH----------------------NEIVA--------------------------------------------------------------GGIN-PCSSS-SSSA---------SVKAKIMAHP--------HYHRLLAAYVN-------------------------------CQK--VGAPP-EVVARLEEACSSAAAAA--A---SMGPTG-------------CLGED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSLSSPSSFSGY-----------------------------------------------------------------GETAIDRNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-ATH------------------------------------------------PH-----------------------HYFMD--NVLGNPFPMDHISSTML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [326]
'gi|20977642|gb|AAM28231.1| knotted-1-like protein 1 [Helianthus annuus]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--SDGDGGGTSSC---------------------LMSFGDT-----------------------------------------TNNINNNSSNN--------NNSNNNIGSLCLPPNPPGAYNTTTNNNNLIFS------------------------------------------DHHPSAMMLEDNN----ININDGVGLAFM------------------------------------------------------------------------------------NPSS---------SVKAKIMSHP--------HYPRLLSAYLN-------------------------------CQK--IGAPP-EVVERLEEACRASVVAA--M---SSCSGGAGTSDGSGGGMNMIIGQD-P--AL------DQFM---------EAYCEMLIKYEQELSKP----FK----EAMLFLSRIES--------------------------------------------QFKAISISTSDSAGG-------------------------------------------------------------------EGGMDK--NGS-SE-EEVDV---NNN-----L--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------EAQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAH------------------------------------------------P------------------------HYFMENMNILGNP-YPMDVSLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [362]
'gi|55276120|gb|AAV49801.1| homeobox transcription factor KN2 [Populus balsamifera subsp. trichocarpa x Populus deltoides]'          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGGGGDGGSSTTSC---------------------MMAFGDN------------------SNGLCPMMMMTPLMSSSSSAHHQHPHHHHRANEG--------DSSISNTLFLPLPPTNNQGHNRIHSN------------------------------------------------ASGSSSMIIDDHNRNHNNNTVTATGCYFM-------------------------------------------------------------------------------DNND-GSSS---------SVKAKIMAHP--------HYHRLLAAYAN-------------------------------CQK--VGAPP-EVVARLEEACASAASIA--P---ANTG---------------CIGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----LK----EAMLFLQRVEC--------------------------------------------QFKALTLSSPISG--------------------------------------------------------------------CGDGNDR--NVS-SE-EEVDV---NNN-----F--ID--------------------PQ-AEDQEL-KGQLL-----------RRYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AGH------------------------------------------------P------------------------HYYMD--NVLGNP-FPMDISPTLL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [373]
'gi|3462612|gb|AAC33008.1| knotted1-like class I homeodomain protein [Pisum sativum] >gi|3426304|gb|AAC32262.1| Knox class 1 pro'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GSSNGSS----------------------SYVMAAFGEN------------------SGGLCPPMMMMPLVTSSH---HHPINSNNN------------NANNTSCLFLPIPNST-NNNNHYTNN-------------------------------------------------NNSNNTMLQNNH--HTTQNTPGLGYYFM---------DN--------------------------------------------------------------HNNN-GASSS-SSSS---------AVKAKIMAHP--------HYHRLLEAYIN-------------------------------CQK--VGAPS-EVVTRLEEACASAVRMG--G---DAVGSG-------------CIGED-P--AL------DQFM---------EAYCEMLIKYEQELSKP----LK----EAMLFLQRIEV--------------------------------------------QFKNLTVSSSSDNIA------------------------------------------------------------------CNEGGDR--NGS-SEEDQVDL---YNN-----M--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLEWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-PTH------------------------------------------------P------------------------HYYMD--NVLTNS-FPMDLSNTML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [371]
'gi|1170312|sp|P46608|HSBH1 SOYBN Homeobox protein SBH1 >gi|485406|gb|AAA20882.1| SBH1'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GGSSSSNGTSY---------------------LLAFGENN-----------------SGGLCPMTMM--PLVTSHHAGHHPINPSNN------------NNVNTNCLFIPNCSNSTGTPSIMLHN------------------------------------------------------NHNNNKTDDDDNNNNTGLGYYFMESDHHHHHHGN--------------------------------------------------------------NNNN-GSSSS-SSSS---------AVKAKIMAHP--------HYHRLLAAYVN-------------------------------CQK--VGAPP-EVVARLEEACASAATMAGGD---AAAGSS-------------CIGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----LK----EAMLFLQRIEC--------------------------------------------QFKNLTISSSDFA--------------------------------------------------------------------SNEGGDR--NGS-SE-EDVDL---HNM--------ID--------------------PQ-AEDRDL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLEWWNRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-PSH------------------------------------------------P------------------------HYYMD--NVLGNP-FPMDLSHPML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [379]
'gi|54042995|gb|AAV28488.1| homeodomain protein ARBORKNOX1 [Populus alba x Populus tremula]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GGDGGSSTTSC---------------------MMAFGDN------------------SNGLCP-MMMTPLMSSSSA------HHHHRANEG--------DSSVSNTLFLPLPPTNNQGHNRIHSN------------------------------------------------ASGSSSMIIDDHN---HNNTVTATGCYFM-------------------------------------------------------------------------------DNND-GSSS---------SVKAKIMAHP--------HYHRLLAAYAN-------------------------------CQK--VGAPP-EVVARLEEACASAASMA--P---ANTG---------------CIGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----LK----EAMLFLQRVEC--------------------------------------------QFKALTVSSPISG--------------------------------------------------------------------CGDGNDR--NVS-SE-EEVDV---NNN-----F--ID--------------------PQ-AEDQEL-KGQLL-----------RRYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AGH------------------------------------------------P------------------------HYYMD--NVLGNP-FPMDISPTLL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [361]
'gi|11037020|gb|AAG27464.1| knotted class I homeodomain KNOX [Medicago truncatula]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GSSNGSC----------------------SYVMGAFGEN------------------SGGLCPPMMMMPLVTSSHHNAHHPINSNNNNNNNN----NNTNANNTTGLFLPIPNSTNNNNNHYTNC------------------------------------------------NNNTSSIMLQNNH-----QNTPGLGYYFM---------DN--------------------------------------------------------------INNH-GSSSS-SSSS---------SVKSKIMAHP--------HYHRLLEAYIN-------------------------------CQK--VGAPS-EVVARLEEACATAVRMG--G---DAVGSG-------------CLGED-P--AL------DQFM---------EAYCEMLIKYEQELSKP----LK----EAMLFLQRIEV--------------------------------------------QFKNLTVSSSSDNIA------------------------------------------------------------------CSEGGDR--NGS-SEEDHVDL---YNN-----M--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLEWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-PSH------------------------------------------------P------------------------HYYMD--NVLTNS-YPMDLSNTML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [381]
'gi|7340350|gb|AAF23753.2| shoot meristemless [Brassica oleracea] >gi|20139943|sp|Q9M6D9|STM BRAOL Homeobox protein Shootmeriste'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--SGSNSTS----------------------CPMAFAGDNS------------------DGPMCPMMMMMMPVITSHQQHHGHDQQHQHQQQHDGYAYQSHHQHSSLLFLQSLTPPSQEAKNKVRSS--------------------------------------------CSPSSGAPAYSFMEINH---------------------QNELLA--------------------------------------------------------------GGLQ---SPV-LSSL---------LVKAKIMAHP--------HYHRLLLAYVN-------------------------------CQK--VGAPP-EVQARLEETCSSAAAAA--A---SMGPTG-------------SLGED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQHVEC--------------------------------------------QFKSLSLSSPSSL-GY-----------------------------------------------------------------GEAAIERNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-ATH------------------------------------------------PL-----------------------HYFMG--NVLGNPFPIDHISGTML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [383]
'gi|6016221|sp|O22299|LET6 LYCES Homeobox protein knotted-1-like LET6 >gi|2529701|gb|AAC49917.1| class I knotted-like homeodomai'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GGSSGNTSTSC-------------------LMMMGYGDHENNNNNNGNGNGNGNGNVTICAPPMMMMMPPPPPSLTNNNNA------------------ETSNNNILFLPFMDNN----------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNPQEDNN-SSSS---------SIKSKIMAHP--------HYHRLLTAYLN-------------------------------CQK--IGAPP-EVVARLEEICATSATMG--R---SSSSSGGG-----------IIGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLAPNSSHESA-----------------------------------------------------------------LGEAMDR--NGS-SD-EEVDV---NNS-----F--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLVDWWLRHI-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAH------------------------------------------------P------------------------HYYMD--NVLANH-FPMDMTPSLL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [355]
'gi|15667619|dbj|BAB68310.1| transcription factor OSH3 [Oryza sativa (indica cultivar-group)]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--ELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGG-------------ARQAVAPATRDGGDGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------AAG-VLDD---------PVKARIVSHP--------RYHRLLAAFLD-------------------------------CHK--VGCPA-EAAEEIAAAARVREARQ--R---AAAAASRMP----------PAPED-P--EL------DQFM---------EDYCKLLVECKEELSRP----LQ----EAEEFLRTVES----------------------------------------------ELNSINSGPPLTALISESKAGLDSSDDD----------------------------------------------------------------EHEDGSGMEMMEAAEDEDLG--II--------------------DPRSDDKAL-KRHLL-----------RKYS----GYLGGLR---KELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWKPT-------------------------------------------------------------E--EMQFAVME-AYHH-----------------------------------------------QSTDAAAAFYVDVDARLVGATAA-APASAVYTARPDHGVWRA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [365]
'gi|26185808|emb|CAD58394.1| putative knotted-1-like protein [Helianthus tuberosus]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--SGGDGGGTSSC---------------------LMSFGDT-----------------------------------------NNNINNSSSNN--------NNSNNNIGSLCLPPNPPGAYNTTTNNNNLIFS------------------------------------------DHHPSAMMLEDNN----ININDGVGLAFM------------------------------------------------------------------------------------NPSS---------SVKAKIMSHP--------HYPRLLSAYLN-------------------------------CQK--IGAPP-EVVERLEEACRASVVAA--M---SSRSGGAGTSDGSGGGMNMIIGQD-P--AL------DQFM---------EAYCEMLIKYEQELSKP----FK----EAMLFLSRMES--------------------------------------------QFKAITFSNSDSGCG-------------------------------------------------------------------EGGMDR--NGS-SE-EELDVDM-NNG-----M--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------EAQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAH------------------------------------------------P------------------------HYFID--NIFGNP-YPMDVSLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [362]
'gi|3046821|dbj|BAA25546.1| homeobox gene [Nicotiana tabacum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MG--GGGSSGNTSSC---------------------LMGYGDDNNNNN---------SGNAALCPPP--MMMPPPPINNNNGESSNNIG--------------GNNNNNILFLPFMAN-----------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNPHEDANCSSSS---------SIKSKIMAHP--------HYPRLLSAYVN-------------------------------CQK--IGAPP-EVVARLEEVCATSATIG--R---NSGG---------------IIGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLTSSSESVAA-----------------------------------------------------------------LGEAIDR--NGS-SE-EEVDV---NNG-----F--ID--------------------PQ-AEDQEL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAH------------------------------------------------P------------------------HYYMD--NVLGNP-FPMDITPTLL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [342]
'gi|4098240|gb|AAD00251.1| knotted 2 protein [Lycopersicon esculentum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GGSSGNTSTSC-------------------LMMMGYGDHENNNNNNGNGNGNGNGNVTICAPPMMMMMPPPPPSLTNNNNA------------------ETSSNNILFLPFMDN-----------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNPQEDNN-SSSS---------SIKSKIMLNP--------HYHRLLTAYLN-------------------------------CQK--IGAPP-EVVARLEEICATSATMG--R---SSSSSGGG-----------IIGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLAPNSSHESA-----------------------------------------------------------------LGEAMDR--NGS-SD-EEVDV---NNS-----F--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLVDWWLRHI-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAH------------------------------------------------P------------------------HYYMD--NVLANH-FPMDMTPSLL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [354]
'gi|18389212|gb|AAL67665.1| invaginata [Antirrhinum majus]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GGGGSSS----------------------NSCMIGFGEN--TSS-------------NNGFCPMTMMMMPPPSMAS-----------------------SHPNGNTLFFPLPSTNNSHQGLNHRT---------------------------------------------------SASTMLEDQH---NNNTITSTGYYFM---------------------------------------------------------------------------------DG-NDND---------SVKAKIMAHP--------YYHKLLAAYIN-------------------------------CQK--IGAPP-EVAVKLEEACASAATMG--R---NSVS---------------RIGED-P--AL------DQFM---------EAYCEMLSKYEQELSKP----FR----EAMLFLSRIEC--------------------------------------------QFKALTLSSSDSA--------------------------------------------------------------------CGEAMDR--HGS-SE-EEIDV---DNS-----L--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAEQTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAH------------------------------------------------P-----------------------GHYYMD--NVLGNP-FAMDILPTLL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [351]
'gi|57116570|gb|AAW33773.1| STM1 protein [Streptocarpus dunnii]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSAGNVNMTSS---------------FKGANSYMGFGDN------------------VNGLCPMMMMMPANDP--------------------------NGDCSQPLFLPLPAANQQGINRNSSS------------------------------------------------------AAACGGSMMPEHQSNTSTGYYFM------------------------------------------------------------------------------EGDGV-AGGG---------SVKSKIMAHP--------HYPRLLAAYVN-------------------------------CQK--IGAPP-EVVAKLEEACASTITIG------GRNERS-------------CVGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMLFLSRIEC--------------------------------------------QFKALTLSHSSDSGAC-----------------------------------------------------------------GEAVMER--NGS-SE-EEFDV---NNS-----F--ID--------------------PQ-AEDREL-KGQLL-----------RRYS----GYLGNLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-ATH------------------------------------------------P------------------------HYYMD--NFIGTP-FPMDISPSFL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [356]
'gi|57116572|gb|AAW33774.1| STM1 protein [Streptocarpus rexii]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GSAGNMNMTSS---------------FKGANSYLGFGDN------------------VNGFCPMMMMMPANNP--------------------------NGDCSQPIFQPLPAANQQGINRNSSS------------------------------------------------------AAACGGSMMPEHQSNTSTGYYFM------------------------------------------------------------------------------EGDGD-AGGG---------SVKSKIMAHP--------HYPRLLAAYVN-------------------------------CQK--IGAPP-EVVAKLEEACASTITIG------GRNERS-------------CVGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMLFLSRIEC--------------------------------------------QFKALTLSHSSDSGAC-----------------------------------------------------------------GEAVLER--NGS-SE-EEFDV---NNS-----F--ID--------------------PQ-AEDREL-KGQLL-----------RRYS----GYLGNLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-ATH------------------------------------------------P------------------------HYYMD--NFMGTP-FPMDISPSFL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [358]
'gi|22074785|gb|AAM47027.1| shootmeristemless-like [Petunia x hybrida]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GGGNSSGNNTS--------------------SLMAYGDHENNNN-------------AICPPMMMMMMPPPPLSITNTSNNGESS--------------SNNNNNILFLPFMEN-----------------------------------------------------------------------------------------------------------------------------------------------------------------NSNTIHEDGN-SCSS---------NIKAKIMAHP--------HYPRLLAAYIN-------------------------------CQK--IGAPP-EVVARLEEVCATSAHMG--R---NGGGGGGGGNN--------VIGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLASTSESVAA-----------------------------------------------------------------FGEAMDR--NGS-SE-EEVDV---NNS-----L--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAH------------------------------------------------P------------------------HYYID--NVLGNP-FPMDMTPTLL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [347]
'gi|7581979|emb|CAB88029.1| knotted1-like homeobox protein [Dendrobium grex Madame Thong-In]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDEMYSIPPDSTFAAADDLHGLIAASGYGA-AAAAA-AAEE---------EMKARIASHP--------RYPHLLEAYID-------------------------------CQK--VGAPP-DIASLLEEIRRENAGGE-----RLASSSV-------------ILGSD-P--EL------DEFM---------EMYCDVLVKYRRDLERP----FD----EATAFLNTMEV--------------------------------------------QLSDLCKPTCRAALGPYVS--------------------DEA------------------------------------------------VGS-S-DEELSG-GEGE-APESHL--------------------------KGEERDL-KEKLL-----------RKYS----GYLSSLK---QEFSKKKKK--GKLPKEARQILFEWWTAHY-KWPYPT------------------EADKIALAEATGLDQKQINNWFINQRKRHWKPA-------------------------------------------------------------E--NMHFSVMD-NSS------------------------------------------------------------------------TSSLFADD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [286]
'gi|50918411|ref|XP 469602.1| knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|41469271|gb|AAS07153.1'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--ELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGG-------------ARQAVAPATRDGGDGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------AAG-VLDD---------PVKARIVSHP--------RYHRLLAAFLD-------------------------------CHK--VGCPA-EAAEEIAAAARVREARQ--R---AAAAASRMP----------PAPED-P--EL------DQFM---------EDYCKLLVECKEELSRP----LQ----EAEEFLRTVES----------------------------------------------ELNSINSGPPLTALISESKAGLDSSDDD----------------------------------------------------------------EHEDGSGMEMMEAAEDEDLG--II--------------------DPRSDDKAL-KRHLL-----------RKYS----GYLGGLR---KELSKKRKK--GKLPKEARQKLLTWWELHY-RWPNPS------------------EMEKIALAESTGLEQKQINNCFINQRKRHWKPT-------------------------------------------------------------E--EMEFAVME-AYHH-----------------------------------------------QSTDAAAAFYVDVDARLVGATAA-APASAVYTARPDHGVWRA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [365]
'gi|27413549|gb|AAO11694.1| Knotted-1-like homeobox protein H1 [Nicotiana tabacum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GGGSSGNT-SC---------------------LMGYNGDDNNNN---------SGNAALCPPPMMMMMMPPPINNNNAESSNNIG--------------GNNNNNILFLPFMDN-----------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNPHEDAN-CSST---------SIKSKIMAHP--------HYPRLLSAYVN-------------------------------CQK--IGAPP-EVVARLEEVCATSATIG--R---NSGG---------------IIGED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLTSSSESVAA-----------------------------------------------------------------LGEAIDR--NGNGSS-EEVDV---NNG-----F--ID--------------------LQ-AEDQEL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAH------------------------------------------------P------------------------HYYMD--NVLGNP-FPMDITPTLL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [343]
'gi|57116574|gb|AAW33775.1| STM1 protein [Streptocarpus saxorum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GSAGNLNLNSY----------------RGANSFMGFGDN------------------VNGFSPMMMMMHANDP--------------------------NGDCSQPIFLPLPAANHQGINRNTGG----------------------------------------------------------GGGLTPEHHSNMSTGYYFM------------------------------------------------------------------------------EGDGD-AGGS---------SVKSKIIAHP--------HYPRLLAAYVS-------------------------------CQK--IGAPP-EVVAKLEEVCASATSTG------CRNERS-------------CVGED-P--AL------DQFM---------EAYCGMLTKYEQELSKP----FK----DAMLFFSRFEC--------------------------------------------QFKALTLSHSADSGAC-----------------------------------------------------------------DEAVLEQ--NGS-SE-EEFDV---NNS-----F--ID--------------------PQ-AEDHEL-KGQLL-----------RKYS----GYLGNLK---QEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLEQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAH------------------------------------------------P------------------------HYYMD--NIMATP-FPMDISSSFL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [353]
'gi|50917689|ref|XP 469241.1| putative KNOTTED-1-like homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|40538935|gb|'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--QQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPLLAPDSKAATSSPLCL---TLDNPTSTSTSPAVPSSAPPPAAALE--------------PSR-QSFHE-RETD---------AIKAKIMSHP--------LYPALLRAFID-------------------------------CQK--VGAPP-EVVGRLSALAGELDSRA--E---DRY--LQ------------GQSSD-P--EL------DEFM---------ETYIDMLVSYRQELTRP----IQ----EADQFFRNMEA--------------------------------------------QIDSFTLD--------------------------------------------------------------------------DNGSEG--GNS-SE-DEQEAGGGDMASAGLPE--IT--------------------SPCAEDKEL-KSHLL-----------NKYS----GYLSSLW---RELSKKKKK--GKLPRDARQKLLHWWQLHY-RWPYPS------------------ELEKAALAESTGLDAKQINNWFINQRKRHWKPTP------------------------------------------------------------P--AMEYRSLQPAGAA-----------------------------------------------SYGGASAGASTSGGGSAVVRGME-GQHFTGGGAYPRGDP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [337]
'gi|18389214|gb|AAL67666.1| hirzina [Antirrhinum majus]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GSGGGG--------------------------MMAFGENNNNNS-------------NNGFCPSNMMMPQLASNC------------------------EGGYSTTPFVPLVPFTNHHHHHQEMN-------------------------------------------RQRSTVVGGSSMVYEEGH-QNNSNAITSTGYYFM-------------------------------------------------------------------------------DSTN-CDES---------SLKAKIMAHP--------HYHRLLAAYVN-------------------------------CHK--IGAPP-EVVSRLEEAAAAMARHG----------TI-------------SVGED-P--GL------DQLM---------EAYSEMLSKYEQELSKP----FK----EAMLFLSRIES--------------------------------------------QFKALTVSAA-----------------------------------------------------------------------RGEAMFR--NGS-SE-EEIDV---NNS-----F--ID--------------------PQ-AEDIEL-KGQLL-----------RKYS----GYLGSLK---QEFMKKRKK--GKLPKEARQQLLEWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQFVVMD-AAN------------------------------------------------P------------------------QYYME--NILGNP-FPMDISPALL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [353]
'gi|9295701|gb|AAF87007.1| F26F24.25 [Arabidopsis thaliana] >gi|15991300|dbj|BAB69678.1| homeodomain transcription factor KNAT6'     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNFHSA-GDYSDKSVLMMSPES---LMFPSDYQALL-------------------CSSAGENRVSDVFGSDELLSVAVSALSSEAASIAPE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-RNDDN-VSLT---------VIKAKIACHP--------SYPRLLQAYID-------------------------------CQK--VGAPP-EIACLLEEIQRESDVYK--Q---EVVPSS-------------CFGAD-P--EL------DEFM---------ETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT---GVESARGVS--------------------EDG------------------------------------------------VIS-S-DEELSG-GDHEVAEDGRQ--------------------------RCEDRDL-KDRLL-----------RKFG----SRISTLK---LEFSKKKKK--GKLPREARQALLDWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMPFAMMD-DSS------------------------------------------------------------------------GSFFTEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [324]
'gi|42570557|ref|NP 850951.2| KNAT6; DNA binding / transcription factor [Arabidopsis thaliana] >gi|28393913|gb|AAO42364.1| putat'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--DGMYNFHSA-GDYSDKSVLMMSPES---LMFPSDYQALL-------------------CSSAGENRVSDVFGSDELLSVAVSALSSEAASIAPE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-RNDDN-VSLT---------VIKAKIACHP--------SYPRLLQAYID-------------------------------CQK--VGAPP-EIACLLEEIQRESDVYK--Q---EVVPSS-------------CFGAD-P--EL------DEFM---------ETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT---GVESARGVS--------------------EDG------------------------------------------------VIS-S-DEELSG-GDHEVAEDGRQ--------------------------RCEDRDL-KDRLL-----------RKFG----SRISTLK---LEFSKKKKK--GKLPREARQALLDWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMPFAMMD-DSS------------------------------------------------------------------------GSFFTEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [327]
'gi|8778590|gb|AAF79598.1| F28C11.2 [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNFHSA-GDYSDKSVLMMSPES---LMFPSDYQALL-------------------CSSAGENRVSDVFGSDELLSVAVSALSSEAASIAPE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-RNDDN-VSLT---------VIKAKIACHP--------SYPRLLQAYID-------------------------------CQK--VGAPP-EIACLLEEIQRESDVYK--Q---EVVPSS-------------CFGAD-P--EL------DEFM---------ETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT---GVESARGVSGGMSPHGDKTISPLLTNDNGEDG------------------------------------------------VIS-S-DEELSG-GDHEVAEDGRQ--------------------------RCEDRDL-KDRLL-----------RKFG----SRISTLK---LEFSKKKKK--GKLPREARQALLDWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMPFAMMD-DSS------------------------------------------------------------------------GSFFTEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [344]
'gi|11463937|dbj|BAB18582.1| CRKNOX1 [Ceratopteris richardii]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDYDGHMRASMSSNICNVMNYAEGQVGSMVA-------------LMTTDHGTEGEQNRNHNPQHTSQHEQPQNQSSHSRNDRRQQLRSLNQTTMSSSLPTSSLTYYNAAMVEPYLQSALLQST----------------------HTFNQSNNVETHPHIISALDQLETSVVVSAEEEKPHIGIRPKPVQSAQFPSSIDCNYVLSSSGQSVLVSPGANST---THESQAAVASV-SR-------------------------DMEN-AHASA-DRSD---------VIRSKIMSHP--------TYPRLVMAYVN-------------------------------CHK--IGAPP-EVATSLEEISKKYQSFR--S---SSPA---------------PTGAD-P--EL------DNFM---------ETYCNVLQKYHDELMQP----YK----EAMTFFRKIEL--------------------------------------------QLNALSKGTVRLCHTGDDKADAN----------------------------------------------------------CNSGQHGLISGGSSGEEDAEEGDVSCGEVDFHEEMID--------------------PL-ADDQKV-KEQLL-----------RKYS----GYIYKLK---QEFLKKKKK--GKLPKNAREKLLDWWNQHY-KWPYPS------------------EAEKAALAETTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQYVMVD-SPTA-----------------------------------------------HHHHHVLHGHAHLTPHPLAPYAV-METMDAAAAAAAAVTMLPSLQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [512]
'gi|3327269|dbj|BAA31698.1| PKn1 [Ipomoea nil]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--DGMFGFHSTP-DYGSRA--LMSPEN----LMDCGYSYNGL-------------IS----PSAPDRI--PVFASDDPTATGSFPCSVVSEAASVAPDVYR-----------RGGGGGRREDA------------------------------------------------------------------------------------------------------------------------------------------------------AGEK-EDDDD-HGIG---------LIKAKIASHP--------SYPKLLEAYID-------------------------------CQK--VGAPP-EIASFLDEIRRENDLFK--H---DSRVST-------------CFGDD-P--EL------DIFM---------ETYCDILVKYKSDLSRP----FD----EAKTFLNKIET--------------------------------------------QLSNLCK-----------D--------------------DGV------------------------------------------------VSS-D-DDEYSG-GEAE-EQDSAV--------------------------KGEDREL-KSRLL-----------QKYG----GHISSLK---LEFSKKKKK--GKLPKDARQILLEWWKGHY-RWPYPT------------------EDDKISLAELTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--HMQLAVMD-NLA------------------------------------------------------------------------GQFFTQD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [333]
'gi|4589884|dbj|BAA76905.1| homeobox 22 [Nicotiana tabacum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDDE-IYGFHST-SEYADKA--LMSPEN---LMMQTEYNMTY--------------HNY---NTLSTPP--MMFGSDDVQLSSEAANS-------ENNNIHHQIRGSC------------------------------------------------------------------------------------------------------------------------------------------------------------------------SR-RDDTE-DASN---------IIKAKVVSHP--------FYPKFVRAYID-------------------------------CQK--VGAPP-EIATVLEEIRQQND-FR--K---PNATSI-------------CIGAD-P--EL------DEFM---------ETYCDILVKYKSDLSRP----FD----EATTFLSKIEL--------------------------------------------QLSNLCK-----------D--------------------DGG-------------------------------------------------VS-S-DEELSC-GEVEGQDASQ---------------------------RSEDNEL-KDRLL-----------RKFG----SHLSTLK---LEFSKKKKK--GKLPKEARQMLLAWWNDHY-RWPYPT------------------EADKNSLAESTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMQLAVMD-NLS------------------------------------------------------------------------GQFFSDD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [319]
'gi|22329749|ref|NP 173752.2| KNAT6; DNA binding / transcription factor [Arabidopsis thaliana] >gi|15991302|dbj|BAB69679.1| home'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNFHSA-GDYSDKSVLMMSPES---LMFPSDYQALL-------------------CSSAGENRVSDVFGSDELLSVAVSALSSEAASIAPE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-RNDDN-VSLT---------VIKAKIACHP--------SYPRLLQAYID-------------------------------CQKKQVGAPP-EIACLLEEIQRESDVYK--Q---EVVPSS-------------CFGAD-P--EL------DEFM---------ETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT---GVESARGVS--------------------EDG------------------------------------------------VIS-S-DEELSG-GDHEVAEDGRQ--------------------------RCEDRDL-KDRLL-----------RKFG----SRISTLK---LEFSKKKKK--GKLPREARQALLDWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMPFAMMD-DSS------------------------------------------------------------------------GSFFTEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [326]
'gi|3327271|dbj|BAA31699.1| PKn2 [Ipomoea nil]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDETTYGFPSTSCDYADKA--LMSPDNNNLMMMDYPYAYNYN-------------YNYHPGGAAADTIPFCGASTEVAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCVD-NEDDD-VSSV---------MIKAKIASHP--------CYPKLLHAYID-------------------------------CQK--VGAPP-EIATVLDEIRREDDELR--KRGGGGAVSS-------------CLGAD-P--EL------DEFM---------ETYYDMLVKYKSDLSKP----FH----EATTFLNTIET--------------------------------------------QLSNLCKD-------------------------------ESG------------------------------------------------AVS-S-DEEDSG-GETDIQQESIT--------------------------KTEERQL-KNTLL-----------RKYG----SHLSSLK---LEFSKKKKK--GKLPKEARQTLLDWWSDHY-KWPYPT------------------EADKIALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--SMQLAVME-NLT------------------------------------------------------------------------GQFFSSDDS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [322]
'gi|5103723|dbj|BAA79223.1| knotted1-type homeobox protein OSH3 [Oryza sativa]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--ELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGG-------------ARQDCC-----TGDAGR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RRRR-RPRRG-VLDD---------PVKARIVSHP--------RYHRLLAAFLD-------------------------------CHK--VGCPA-EAAEEIAAAARVREARQ--R---AAAAASRMP----------PAPED-P--EL------KLVT---------EDYCKLLVECKEELSRP----LQ----EAEEFLRTVES--------------------------------------------ELELNSINSGPPLTALISESKAGLDSSDDD----------------------------------------------------------------EHEDGSGMEMMEAAEDEDLG--II--------------------DPRSDDKAL-KRHLL-----------RKYS----GYLGGLR---KELSKKRKK--GKLPKEARQKLLTWWELHY-RWPNPS------------------EMEKIALAESTGLEQKQINNCFINQRKRHWKPT-------------------------------------------------------------E--EMEFAVME-AYHH-----------------------------------------------QSTDAAAAFYVDVDARLVGATAA-APASAVYTARPDHGVWRA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [367]
gi|1814234|gb|AAB41849.1|_POTH1                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDDE-MYGFHSTRDDYADKA--LMSPEN---LMMQTEYN-NF--------------HNYTNSSILTSNP--MMFGSDDIQLSSEQTNSFSTMTLQNNDNIYQIRSGNCGGGSGSGGSSKDHNDN------------------------------------------------------------------------------------------------------------------------------------------------------NNNN-EDYDE-DGSN---------VIKAKIVSHP--------YYPKLLNAYID-------------------------------CQK--VGAPA-GIVNLLEEIRQQTD-FR--K---PNATSI-------------CIGAD-P--EL------DEFM---------ETYCDILLKYKSDLSRP----FD----EATTFLNKIEM--------------------------------------------QLGNLCK-----------D--------------------DGG-------------------------------------------------VS-S-DEELSC-GEA---DASM---------------------------RSEDNEL-KDRLL-----------RKFG----SHLSSLK---LEFSKKKKK--GKLPKEARQMLLAWWDDHF-RWPYPT------------------EADKNSLAESTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMQLAVMD-NLS------------------------------------------------------------------------SQFFSSD-D---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [345]
'gi|5103727|dbj|BAA79225.1| knotted1-type homeobox protein OSH43 [Oryza sativa]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFASLAGGGSSSTTARLPELISPENPDHISPPPLLYQLLAGPESSARQHGHDGHHHGGGGGEAAAAAVQG-QVSPA-GAEA---------AVKAEIMSHP--------QYSALLAAYLG-------------------------------CKK--VGAPP-DVLTKLTAVPAA-QQLDEADGHPRRRHEP-------------QRDDD-PD-QL------DQFM---------DAYCSMLTRYREELERP----IL----EAAEFFSRVET--------------------------------------------QLDSLAESNC--------------------------------------------------------------------------------EGTGSSEEEQD----------------------------------------PSDKQL-KHQLL-----------RKYG----GSLGDLR---QVFSKRTKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------EMEKMTLAQTTGLDQKQINNWFINQRKRHWKPT-------------------------------------------------------------PVAGTAFPTMEAAGGGFRHSGHGGGL---AAAAALPLYMGR-PFVVDGMYRLGS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [341]
'gi|11463941|dbj|BAB18584.1| CRKNOX2 [Ceratopteris richardii]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATNAVSSTHSASSLSYYSTRIVEPYLQSELLQGT----------------------QGFHRPHTSHCQRQVTSSVESLELS-AVAGERGKADTAIAIDRSQGFEILSPT-CNYVVSSNGETVLANPSLDST---GHANHEEGPSLPSR-------------------------SM-------A-DRDD---------LIRTKIVSHP--------SYPRLVMAYVN-------------------------------CYK--IGAPE-DAALILEEVSRKYQEIR--S---SSSE---------------VIGAD-P--EL------DNFM---------ELYCNVLQRYHEELTHP----YK----EAMAFFKKIEL--------------------------------------------QLDAISKGSLSLSQSGETKTEAN----------------------------------------------------------SDSAWHGQTGAAPSIEDEPEEGDMSSGEVDFHDEMID--------------------PL-AEDQKL-KEQLL-----------RKYS----GYIFKLK---QEFLKKKKK--GKLPREARQMLLDWWTQHY-KWPYPS------------------EAEKTALAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMQYVMMD-SPAG-----------------------------------------------QTQHTFLRPHSHIASQHLSPYTV-LQTMEVAAGAAPSATMMSSLH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [430]
'gi|984046|emb|CAA57122.1| ATK1 [Arabidopsis thaliana] >gi|984048|emb|CAA57121.1| ATK1 [Arabidopsis thaliana]'                       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--DRMCGFRST-EDYSEKATLMM----------PSDYQSLI-------------------CSTTGDNQ--RLFGSDEL----ATALSSE---LLPR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-KAEDN-FSLS---------VIKSKIASHP--------LYPRLLQTYID-------------------------------CQK--VGAPM-EIACILEEIQRENHVYK--R---DVAPLS-------------CFGAD-P--EL------DEFM---------ETYCDILVKYKTDLARP----FD----EATTFINKIEM--------------------------------------------QLQNLCT---GPASATALS--------------------DDG------------------------------------------------AVS-S-DEELRE-DDDIAADDSQQ--------------------------RSNDRDL-KDQLL-----------RKFG----SHISSLK---LEFSKKKKK--GKLPREARQALLDWWNVHN-KWPYPT------------------EGDKIALAEETGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMPFDMMD-DSN------------------------------------------------------------------------ETFFTEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [311]
'gi|50872441|gb|AAT85041.1| knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)]'                                 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFASLAGGGSSSTTARLPELISPENPDHISPPPLLYQLLAGPESSARQHGHDGHHHGGGGGEAAAAAVQG-QVSPA-GAEA---------AVKAEIMSHP--------QYSALLAAYLG-------------------------------CKK--VGAPP-DVLTKLTAVPAA-QQLDEADGHPRRRHEP-------------QRDDD-PD-QL------DQFM---------DAYCSMLTRYREELERP----IL----EAAEFFSRVET--------------------------------------------QLDSLA-------------------------------------------------------------------------------------GTGSSEEEQD----------------------------------------PSDKQL-KHQLL-----------RKYG----GSLGDLR---QVFSKRTKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------EMEKMTLAQTTGLDQKQINNWFINQRKRHWKPT-------------------------------------------------------------PVAGTAFPTMEAAGGGFRHSGHGGGL---AAAAALPLYMGR-PFVVDGMYRLGS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [336]
'gi|55416167|gb|AAV50045.1| homeobox protein [Saccharum hybrid cultivar]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR--VGGAA---SEAS-----------------------------------------------------------------------------------TAGVGAGGPS-----------------------------------------------------------------------------------------------------------------------------------------------------------------PS-DLTE---------LMKAQIASHP--------RYPSLLSAYIE-------------------------------CRK--VGAPP-QVASLLEEVSRERSPGA--A---GAGE----------------IGVD-P--EL------DEFM---------DSYCRVLVRYKEELSRP----FD----EAASFLSSIQA--------------------------------------------QLSNLCSAGSSP-AATATH-------------------SDDM------------------------------------------------MGS-S-EDEQCS-GDTD-VPDIGQ--EH--------------------SSRLADHEL-KEMLL-----------KKYS----GCLSRLR---SEFLKKRKK--GKLPKDARTVLLEWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQKKKHWKPS-------------------------------------------------------------E--DMRFALME-GVA------------------------------------------------------------------------GG--SSGTTSTSIQAQLDPESHTIWDDNWPIQSVVRPGM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [315]
'gi|42563111|ref|NP 177208.2| KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor [Arabidopsis thaliana] >gi|'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--DRMCGFRST-EDYSEKATLMM----------PSDYQSLI-------------------CSTTGDNQ--RLFGSDEL----ATALSSE---LLPR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-KAEDN-FSLS---------VIKSKIASHP--------LYPRLLQTYID-------------------------------CQK--VGAPM-EIACILEEIQRENHVYK--R---DVAPLS-------------CFGAD-P--EL------DEFM---------ETYCDILVKYKTDLARP----FD----EATTFINKIEM--------------------------------------------QLQNLCT---GPASATALS--------------------DDG------------------------------------------------AVS-S-DEELRE-DDDIAADDSQQ--------------------------RSNDRDL-KDQLL-----------RKFG----SHISSLK---LEFSKKKKK--GKLPREARQALLDWWNVHN-KWPYPT------------------EGDKISLAEETGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMPFDMMD-DSN------------------------------------------------------------------------ETFFTE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [310]
'gi|4240539|gb|AAD13611.1| knotted class 1 homeodomain protein liguleless3 [Zea mays]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR-VVGGAASEAS--------------------------------------------------------------------------------------VAGAGAGGPS-----------------------------------------------------------------------------------------------------------------------------------------------------------------PS-DLTE---------LMKAQIASHP--------RYPSLLSAYIE-------------------------------CRK--VGAHP-HVTSLLEEVSRERRPDAGAG----------------------EIGVD-P--EL------DEFM---------DAYCRVLVRYKEELTRP----FD----EAASFLSSIQA--------------------------------------------QLSDLCSGGSSP-AATATH-------------------SDDM------------------------------------------------MGS-S-EDEQCS-GDTD-VPDMGQ--EH--------------------SSHLGDHEL-KEMLL-----------KKYS----GCLSRLR---SEFLKKRKK--GKLPKDARTVLLEWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMRFALME-GVA------------------------------------------------------------------------GG--SSGTTLYFDTGTIGP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [295]
'gi|30348863|gb|AAP31409.1| knotted1-like homeodomain protein liguleless4a [Zea mays]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR--AGGAATAASEVS-----------------------------------------------------------------------------------GVAGGPGSPPPPP------------------------------------------------------------------------------------------------------------------------------------------------------SQPP-PPPPA-DLTE---------LVKAQIAGHP--------RYPSLLSAYIE-------------------------------CRK--VGAPP-EVATLLEEIGRERCAAA--S---AGGE----------------VGLD-P--EL------DEFM---------EAYCRVLERYKEELSRP----FD----EAASFLSSVRT--------------------------------------------QLSSLCGA-------AASL-------------------SDEM------------------------------------------------VGS-SEEDEACSGGDTEATEPGQQ--EH--------------------SSRLADREL-KEMLL-----------KKYS----GCLSRLR---SEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAATGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMRFALME-GVT------------------------------------------------------------------------GGGPSSGTTLYFDTGTIGP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [307]
'gi|12325041|gb|AAG52468.1| homeotic protein (ATK1); 26548-32058 [Arabidopsis thaliana] >gi|25386225|pir||A96729 homeotic protei'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--DRMCGFRST-EDYSEKATLMM----------PSDYQSLI-------------------CSTTGDNQ--RLFGSDEL----ATALSSE---LLPR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-KAEDN-FSLS---------VIKSKIASHP--------LYPRLLQTYID-------------------------------CQK--VGAPM-EIACILEEIQRENHVYK--R---DVAPLS-------------CFGAD-P--EL------DEFM---------ETYCDILVKYKTDLARP----FD----EATTFINKIEM--------------------------------------------QLQNLCT---GPASATALS-------------------ADDG------------------------------------------------AVS-S-DEELRE-DDDIAADDSQQ--------------------------RSNDRDL-KDQLL-----------RKFG----SHISSLK---LEFSKKKKK--GKLPREARQALLDWWNVHN-KWPYPT------------------EGDKISLAEETGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMPFDMMD-DSN------------------------------------------------------------------------ETFFTE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [311]
'gi|34896868|ref|NP 909778.1| putative knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|31745219|gb|A'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFASLAGGGSSSTTARLPELIPPENPDRISPPPLLYQLLAGSASSARHG--HGHHHGGGGG-AAAAAVQGLQVSPA-GAEA---------AMKAEIMSHP--------QYSALLAAYLG-------------------------------CKK--VGAPP-DVLTKLTAVPAAQQQLDAADGHPRRRHEP-------------RRDDDVPDHQL------DQFM---------DAYCSMLTRYREELERP----IL----EAAEFFSLIRS--------------------------------------------LVNSNC------------------------------------------------------------------------------------EGTGSSEEEQDTSCPEAEEID------------------------------PSDKQL-KHQLL-----------MKYG----GSLGDLR---QAFSKRTKK--GKLPKEARLKLLHWWELHYDKWPYPS------------------EVEKMTLAQTTGLDQKQISNWFINQRKRHWKPT-------------------------------------------------------------PVAGMTFPTVEAAGGGFRHSGHDGGLAAAAAAAALPLYMGSWPFVVDGMYRLGS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [353]
'gi|50900828|ref|XP 462847.1| putative knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|21104563|dbj|'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR--VGGAASEASGVG-----------------------------------------------------------------------------------VVVGGGGGSS-----------------------------------------------------------------------------------------------------------------------------------------------------------------SS-DLTE---------LMKAQIAGHP--------RYPTLLSAYIE-------------------------------CRK--VGAPP-EVASLLKEIGRERRAGG--G---GGGA-G-------------QIGVD-P--EL------DEFM---------EAYCRVLVRYKEELSRP----FD----EAASFLSSIQT--------------------------------------------QLSNLCSGATSPPATTATH-------------------SDEM------------------------------------------------VGS-S-DEDQCS-GETD-MLDIGQ--EQ--------------------SSRLADHEL-KEMLL-----------KKYS----GCLSRLR---SEFLKKRKK--GKLPKDARSALLEWWNTHY-RWPYPT------------------EEDKLRLAARTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------D--GMRFALME-GVA------------------------------------------------------------------------GG--SSGTTLYFDTGTIGP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [301]
'gi|4098242|gb|AAD00252.1| knotted 3 protein [Lycopersicon esculentum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDDEIMYGFNSTRDDYADKA--LMSPEN---LMMQTEYN-NF--------------HNYTNSSI--------MFGSDPIQLSSEQ-------TLQNN-----IYRGNCCGGSGSGG------DN------------------------------------------------------------------------------------------------------------------------------------------------------NNNN----DE-DGSN---------IIKAKILSHP--------YYPKLLNAYID-------------------------------CQK--VGAPA-SIVNLLEEIRQQND-FR--K---PNATCL-------------CIGAD-P--EL------DEFM---------ETYCDILLKYKSDLSRP----FD----EATTFLNNIEM--------------------------------------------QLGNLCK-----------D--------------------DDE--------------------------------------------------E-E-EEELSC-GDA---SSSMR--------------------------RSEDNEL-KDRLL-----------RKFG----SHLSSLK---LEFSKKKKK--GKLPKEAREMLLAWWYDHF-RWPYST------------------EADKNSLAESTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMQLAVMD-NLS------------------------------------------------------------------------AQFFSSDVD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [320]
'gi|5103725|dbj|BAA79224.1| knotted1-type homeobox protein OSH6 [Oryza sativa]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR--VGGAASEASGVG-----------------------------------------------------------------------------------VVVGGGGGSS-----------------------------------------------------------------------------------------------------------------------------------------------------------------SS-DLTE---------LMKAQIAGHP--------RYPTLLSAYIE-------------------------------CRK--VGAPP-EVASLLKEIGRERRAGG--G---GGGA-G-------------QIGVD-P--EL------DEFM---------EAYCRVLVRYKEELSRP----FD----EAASFLSSIQT--------------------------------------------QLSNLCSGATSPPATTATH-------------------SDEM------------------------------------------------VGS-S-DEDQCS-GETD-MLDIGQ--EQ--------------------SSRLADHEL-KEMLL-----------KKYS----GCLSRLR---SEFLKKRKK--GKLPKDARSALLEWWNTHY-RWPYPT------------------EEDKLRLAARTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------D--GMRFAFME-GVA------------------------------------------------------------------------GG--SSGTTLYFDTGTIGP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [301]
'gi|58011285|gb|AAW62517.1| KNOTTED1-like protein [Selaginella kraussiana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--LRGRRSTSQSPASTQDSTEVSMEQHLPPPRHPHPQQHEMGAMMV-------------LMEESSNAHHHHLGSTS------SMPPHQEQQQNPYRPSAAGEHQQQFFLPGMIKEESSPHHQQQQQNFLLPSSVFSME----------------------NICWPTNDQADLMESMSPESADLCRNLSSQLEHFRKEIGTYHGAESSSQQHHLVSSASGSSSGSYGVDKSLSVVP---AVSLASD--------------------------------LLGS-TSSQS-SESE---------MLRAAIVSHP--------HYPELVVAHMN-------------------------------CHK--VAASP-EVVSQIDEIIQNFKDFQ--P---PVAA---------------SLGAN-P--EL------DQFM---------VAYYSMLLKCEKEVRKT----FK----EAVAFCKKLDQ--------------------------------------------QFQVITNGSASSVTSV-------------------------------------------------------------------ESDDRNEAYDSSEDED------SGAEVEI-E--VD--------------------PM-AKDKEL-KEQLM-----------RKYS----GYISSLK---HEFLKKKKK--GKLPKDSRQILLNWWSVHY-KWPYPS------------------ESEKASLAESTGLDQKQINNWFINQRKRHWKPS-------------------------------------------------------------D--ELTALSGQPSQST-----------------------------------------------EASSGS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [460]
'gi|28195122|gb|AAO33774.1| knotted protein TKN4 [Lycopersicon esculentum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDELSKLHSAIVCSHSRRQ---------------------------------------------------------------QEVEVEAEAGPTIINNTTTSFAAVHHHYCQLEAAVAADHNH------------------------------------------------------------------------------------------------------------------------------------------------------HQNN-TKSTT-NMSD---------LIKAQIANHP--------LYPNLLSAYLQ-------------------------------CRK--VGAPQ-EMTSILDEISKENNLIS------SSRHSS-------------EIGAD-P--EL------DEFM---------ESYCAVLVKYKEEFSKP----FD----EATSFLSNIES--------------------------------------------QLSSLCK-----------DNLITST-------SFNNYISDEA------------------------------------------------GGS-S-DEDLGC-EEMEAADS-QE--SP--------------------ANCEGDNEL-KEMLM-----------RKYS----GYLSSLR---KEFLKKRKK--GKLPKEARIVLLDWWKNHY-RWPYPT------------------EEEKNRLSEMTGLDQKQINNWFINQRKRHWRPS-------------------------------------------------------------E--DMKFALME-GVS----------------------------------------------------------------------------AGSMYFDGSGGTGNIGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [335]
'gi|31323451|gb|AAP47027.1| knotted homeodomain protein 4 [Lycopersicon esculentum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AV--LMMDELSKLHSAIVCSHSRRQ---------------------------------------------------------------QEVEVEAEAGPTIINNTTTSFAAVHHHYCQLEAAVAADHNH------------------------------------------------------------------------------------------------------------------------------------------------------HQNN-TKSTT-NMSD---------LIKAQIANHP--------LYPNLLSAYLQ-------------------------------CRK--VGAPQ-EMTSILDEISKENNLIS------SSRHSS-------------EIGAD-P--EL------DEFM---------ESYCAVLVKYKEEFSKP----FD----EATSFLSNIES--------------------------------------------QLSSLCK-----------DNLITST-------SFNNYISDEA------------------------------------------------GGS-S-DEDLGC-EEMEAADS-QE--SP--------------------ANCEGDNEL-KEMLM-----------RKYS----GYLSSLR---KEFLKKRKK--GKLPKEARIVLLDWWKNHY-RWPYPT------------------EEEKNRLSEMTGLDQKQINNWFINQRKRHWRPS-------------------------------------------------------------E--DMKFALME-GVS----------------------------------------------------------------------------AGSMYFDGSGGTGNIGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [338]
'gi|4589880|dbj|BAA76903.1| homeobox 9 [Nicotiana tabacum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--KMYEFVSSSSDVYSVEDNLQPPYFGSPPAFCDGLAPMGFGSGNM-------------SWACPETSAANLVVDKSGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSSN-LQLED-HPET---------DIRAKISSHP--------LYPKLLRTYID-------------------------------CHK--VGAPSDEIVDMLDNINIVHENDL-------SRRSN-------------RLSDD-S--EL------DAFM---------ETYCDVLAKFKSDLERP----FN----EATTFLNDIET--------------------------------------------QLTNLCAAPATTISNISD------------------------------------------------------------------------EGAAGTEEEEEVADTSGGGGNTND--M-----------------------CRSENEI-KDKLM-----------RKYS----GYISSLK---QEFSKKNKK--GKLPREARQILLNWWTTHY-KWPYPT------------------EGEKICLAESTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------E--NMQYAVME-SIY------------------------------------------------------------------------GHFSE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [322]
'gi|51854371|gb|AAU10751.1| KNOX class homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|2935573|gb|AAC32817.1| K'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISRGGGGGGGGAASEAS-----------------------------------------------------------------------------------GVAGGGSSPPHPP------------------------------------------------------------------------------------------------------------------------------------------------------PPAT-TAAAA-DLTE---------LMKAQIAGHP--------SYPSLLSAYIE-------------------------------CRK--VGAPP-EVTTLLEEIGREGRGGG--G---GATAGG-------------EIGLD-P--EL------DEFM---------ETYCRVLERYKEELTRP----FD----EAASFLTGIHT--------------------------------------------QLASLCGGAPPP----TDN-------------------SDEM------------------------------------------------VGS-S-EDEPCS-GDAD-AADFGQ--EH--------------------SSRLADHEL-KEMLL-----------KKYS----GCLSRLR---SEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMRFALME-GVT------------------------------------------------------------------------GGS-SSGTTLYFDTGTIGP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [311]
'gi|3327275|dbj|BAA31701.1| PKn3 [Ipomoea nil]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD--ELYGIHSVLAPSNAPSNNNNNVFSLGVDDIHHHHNHHHHQSSMM-------------NGGIVISGDEGQLQGQHHHHHHLLVTSSNDNYYNSDEN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKGG-GGGVE-MMSD---------VVKAQIASHP--------LYPNLVSAYIQ-------------------------------CRK--VAAPP-EMAALLEELSKVTQPIT----------TA-------------EIGAD-P--EL------DEFM---------ESYCEVLYKYKEELSKP----FD----EAKTFLSSIES--------------------------------------------QLSNLCKDTFPTTSFNS----------------------------------------------------------------YHSGDEA--GGT-SE-EDLSC-GEVEVAESQEH--LN--------------------NNSEGDQQI-KEMLM-----------RKYS----GYLSSLR---KEFLKKRKK--GKLPKDARVALLDWWNSHY-RWPYTT------------------EEEKNKLSEATGLDQKQINNWFINQRKRHWRPS-------------------------------------------------------------E--DMRFALME-GVS-------------------------------------------------------------------GDVA-GSMFFDAGGGTGNLGI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [358]
'gi|30348865|gb|AAP31410.1| knotted1-like homeodomain protein liguleless4b [Zea mays]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR--HGAAAT--SEAS-----------------------------------------------------------------------------------GVAGGPGSPP-----------------------------------------------------------------------------------------------------------------------------------------------------------PP-PPPAA-DLTE---------LVKAQIAGHP--------RYPSLLSAYID-------------------------------CRK--VGAPS-EVATLLEEIGRERCAAA--S---AGGE---------------VVGMD-P--EL------DEFM---------ETYCRLLERYKEELSRP----FD----EAASFLSSVRT--------------------------------------------QLSSLCGG-------AASL-------------------SDEM------------------------------------------------VES-S-EDEPCS-GDTDATTDPGQ--EH--------------------SSRLADREL-KEMLL-----------KKYS----GCLSRLR---SEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------E--DMRFALME-GGV------------------------------------------------------------------------SGS-SSGTTLYFDTGTIGP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [298]
'gi|50917693|ref|XP 469243.1| putative KNOX class homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|40538948|gb|A'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQLHLLLASGGGSKASTTITPFCLARDHASTSSPSPAAVAAPAPPPEATSGSEQSIHGS---------------GTGLQ-SSEA---------MIKAKIMSHP--------LYPSLLRAFVD-------------------------------CKK--VGAPP-EVVGRLSSLAVVTDVPQYSGDRCLPAQ---------------QPAAD-P--EL------DQFM---------ETYCYMLTRYGQELARP----IQ----EAEEFFRGIEE--------------------------------------------QIDSLALDE---------------------------------------------------------------------------------DVSYDYEDEVAGGLPEKSAAFGEN---------------------------EVTTTT-RRHLM-----------NKYS----GYLNSLW---TEISNKKKNSTGHLPRDARHKLLQWWHLHY-RWPYPS------------------EAEKAALAESTGLDKKQVTNWFINQRKRHWKPKPA-----------------------------------------------------------AAMDAGFLQMHPRYGASSSSSPAAALRVEDGGGRRSAYHPRGGP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [337]
'gi|4589449|dbj|BAA76750.1| KN1-type homeobox protein [Nicotiana tabacum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDELSKLHSAIACSSNNNH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVGVLEHITGQQQEGPINNSSVDNNLEKASL-EMSD---------LIKAQIANHP--------LYPNLLSAYLQ-------------------------------CRK--VGAPQ-EMASILEEISKENHLIS-------SGHNT-------------EIGTD-P--EL------DDFM---------ESYCAVLLKYKEELSKP----FD----EATTFLNNIES--------------------------------------------QLSSLCKENLTTTTTTTTS-----------FNSNNNYLSDEA------------------------------------------------GGT--SDEDLCC-GEMEAADSTQE----------------------SPANREGDNEL-KETLM-----------RKYS----GYLSSLR---KEFLKKRKK--GKLPKDARTALLEWWNTHY-RWPYPT------------------EEEKNRLSEITGLDPKQINNWFINQRKRHWRPS-------------------------------------------------------------E--DMKYALME-GVS------------------------------------------------------------------------SGSIAGSMYFDGAGGTGSIGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [327]
'gi|33333544|gb|AAQ11888.1| knotted 1 [Nicotiana tabacum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDELSKLHSAIACSSNNNH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVGVLEHITGQQQEGPINNSSVDNNLEKASL-EMSD---------LIKAQIANHP--------LYPNLLSAYLQ-------------------------------CRK--VGTPQ-EMASILEEISKENHLIS-------SCHNT-------------EIGTD-P--EL------DDFM---------ESYCAVLLKYKEELSKP----FD----EATTFLNNIES--------------------------------------------QLSSLCKENLTTTTTTTTS-----------FNSNNNYLSDEA------------------------------------------------GGT--SDEDLGC-REMEAVDSTQE----------------------SPANREGDNEL-KETLM-----------RKYS----GYLSSLR---KEFLKKRKK--GKLPKDARTALLDWWNTHY-RWPYPT------------------EEEKNRLSEITGLDPKQINNWFINQRKRHWRPS-------------------------------------------------------------E--DMKYALME-GVS------------------------------------------------------------------------SGSIAGSMYFDGAGGTGSIGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [327]
'gi|4887612|dbj|BAA77819.1| homeobox gene [Oryza sativa (japonica cultivar-group)]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLLVECKEELSRP----LQ----EAEEFLRTVES----------------------------------------------ELNSINSGPPLTALISESKAGLDSSDDD----------------------------------------------------------------EHEDGSGMEMMEAAEDEDLG--II--------------------DPRSDDKAL-KRHLL-----------RKYS----GYLGGLR---KELSKKRKK--GKLPKEARQKLLTWWELHY-RWPNPS------------------EMEKIALAESTGLEQKQINNCFINQRKRHWKPT-------------------------------------------------------------E--EMEFAVME-AYHH-----------------------------------------------QSTDAAAAFYVDVDARLVGATAA-APASAVYTARPDHGVWRA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [222]
lcl|Smo_At4g08150_6_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEWLVEGLIEQAAEGLTTS-PPPPPPPLAPTSSMAAPRTEHEDMDPR-GSKVS-LSDS---------EIMSAISGHP--------QYKELLRAHMN-------------------------------CYK--VGASA-DLAAQMDELVRKREFESAVKT---------------------SIGVD-P--EL------DQFMLQSLTVFYQVAYCNVLNAYEIELRRT----FK----EAIEFCKKQEH--------------------------------------------QLSVIAVSNIDVLSSAE-------------------------------------------------------------------------NEDASETYEDFMEEAESGGIGEVDTDLD--------------------PL-AGDKEL-KKVLM-----------KRYG----GYIKGLT---QEYLKKKKK--GKLPKESRQQLLDWWSQHQ-DHPYPN------------------ENQKSNLAQSTGLDPKQINNWFINQRKRHWNPQAV-----------------------------------------------------------RGESSQQRDAKSSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [309]
'gi|58011287|gb|AAW62518.1| KNOTTED1-like protein [Selaginella kraussiana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSAAASSSSKFTAP---ASTMDEWYMLSSYQSLIDANEGLEHAAGALEHHQQQQSSSSKQ-KSSLQ-LSEK---------EMKAAISGHP--------QYLELIKAHMS-------------------------------IKK--VGASS-QKVAEINEVIRMHQDSQPSSVHT-------------------NIGAN-P--EL------DQFM---------VAYCDVLNMYENQLNKA----FT----GAIEYCKQQEQ--------------------------------------------ELKLVSVSDEPIDAL---------------------------------------------------------------------------SSVELDDDVEDDEEAESDDVAADGGDID--------------------PL-IGDKEI-KRALM-----------KKYG----GYLGGLT---QEYLKKKKK--SKLPSAATKTLRDWWFQHL-EHPYPS------------------EAQKATLAATTKLDPKQINNWFINQRKRHWDPS-------------------------------------------------------------A--AAASARGESLQQQGSQDGD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [315]
'gi|15637047|dbj|BAB68189.1| transcription factor OSH3 [Oryza sativa (japonica cultivar-group)] >gi|15636985|dbj|BAB68158.1| tra'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDDKAL-KRHLL-----------RKYS----GYLGGLR---KELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWKPT-------------------------------------------------------------E--EMEFAVME-AYHH-----------------------------------------------QSTDAAAAFYVDVDARLVGATAA-APASAVYTARPDH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [138]
'gi|15637043|dbj|BAB68187.1| transcription factor OSH3 [Oryza sativa (japonica cultivar-group)] >gi|15636989|dbj|BAB68160.1| tra'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDDKAL-KRHLL-----------RKYS----GYLGGLR---KELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWKPT-------------------------------------------------------------E--EMEFAVME-AYHH-----------------------------------------------QSTDAAAAFYVNVDARLVGATAA-APASAVYTARPDH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [138]
'gi|15637027|dbj|BAB68179.1| transcription factor OSH3 [Oryza sativa (japonica cultivar-group)] >gi|15636977|dbj|BAB68154.1| tra'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDDKAL-KRHLL-----------RKYS----GYLGGLR---KELSKKRKK--GKLPKEARQKLLTWWELHY-RWPNPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWKPT-------------------------------------------------------------E--EMEFAVME-AYHH-----------------------------------------------QSTDAAAAFYVDVDARLVGATAA-APASAVYTARPDH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [138]
'gi|29788837|gb|AAP03383.1| putative homeobox, 5''-partial [Oryza sativa (japonica cultivar-group)]'                                 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNGSEG--GNS-SE-DEQEAGGGDMASAGLPE--IT--------------------SPCAEDKEL-KSHLL-----------NKYS----GYLSSLW---RELSKKKKK--GKLPRDARQKLLHWWQLHY-RWPYPS------------------ELEKAALAESTGLDAKQINNWFINQRKRHWKPTP------------------------------------------------------------P--AMEYRSLQPAGAA-----------------------------------------------SYGGASAGASTSGGGSAVVRGME-GQHFTGGGAYPRGDP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [175]
'gi|15636953|dbj|BAB68142.1| transcription factor OSH3 [Oryza sativa (japonica cultivar-group)]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDDKAL-KRHLL-----------RKYS----GYLGGLR---KELSKKRKK--GKLPKEARQKLLTWCELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWKPT-------------------------------------------------------------E--EMEFAVME-AYHH-----------------------------------------------QSTDAAAAFYVDVDARLVGATAA-APASAVYTARPDH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [138]
'gi|14456343|gb|AAK62559.1| class 1 KNOTTED1-like protein MKN4 [Physcomitrella patens]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNRDMVGIVSSASARLEENPRLESYIASTGELAGWVEKSASVEATRSSLQLSQSQAFFEQYSTQYPQSDISSSSQADISAHDYLNIFKGTHAQAKADMKPRITQFMIPVQNQLEAGSYLLPHMAHDDSNNFSTSSNIGRATQSLCTMHQDMETLRQVPKSNDLL---IAITASAAAAVNQERGSGSETGQ--------------HDRDDD-EKNKA-TDRGKLPENEEEQLLRDAIVDHP--------LYPELVVAHIS-------------------------------IFK--IGAPK-GLLIKLDEMEKKFQRFQYGESSWNVLHVTKFG-------------QD-P--SL------DFFM---------RSYIDLLTKFREDLENP--------YNKFAQYKDKVTK--------------------------------------------DLEDLCGHY---------------------------------------------------------------------------------IETTPDEEDNFGSDIGTKDM-SQDLNDLEILGEENLMYTADIDESIVIDPDAADEEL-KKMLR-----------LKYG----KHIAGLK---AEFNRVRKK--GKLPTNARQILKDWFSRHS-YWPYPS------------------EMEKAYLQRLCGLNLKQINNWFINERKRHWSCK-------------------------------------------------------------G--KCMYPNTKFYPRDGHVDPNNHGEGYLEQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [488]
'gi|1805617|dbj|BAA08552.1| OSH45 [Oryza sativa (japonica cultivar-group)]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAF-HGHL---PH--EMTM-----------QALGADDAAVAAAAAAGGVGAG---------------------------------------------------------------------------------------------GAPAWMRYNDGSFLH------LQTTSDSSASPSGAA------------AAAAAAAAAAAAGVQQWMGGGG------------------------------------GGEDAVAAAM--------------------------GGGGEA---------DAA---------RCKAEILAHP--------LYEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQGVVAKYSALAAAA-AG----D----------DG-R--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------NLQSLTGASPGEG-----------------------------------------------------------------------------TGATMSDGEDD---QADSEANMYDPSLD-GAD-NMGFG--LPTESERSLMERVRQEL-KHELK-----------QGYK----EKLIDIR---EEILRKRRA--GKLPGDTTSTLKAWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTSV-KTKRKR-------------------------------------------------AG-------------------------------GIHPKQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [375]
'gi|1805618|dbj|BAA08553.1| OSH45 [Oryza sativa (japonica cultivar-group)]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAF-HGHL---PH--EMTM-----------QALGADDAAVAAAAAAGGVGAG---------------------------------------------------------------------------------------------GAPAWMRYNDGSFLH------LQTTSDSSASPSGAA------------AAAAAAAAAAAAGVQQWMGGGG------------------------------------GGEDAVAAAM--------------------------GGGGEA---------DAA---------RCKAEILAHP--------LYEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQGVVAKYSALAAAA-AG----D----------DG-R--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------NLQSLTGASPGEG-----------------------------------------------------------------------------TGATMSDGEDD---QADSEANMYDPSLD-GAD-NMGFG--LPTESERSLMERVRQEL-KHELK-----------QGYK----EKLIDIR---EEILRKRRA--GKLPGDTTSTLKAWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTSV-KTKRKS-------------------------------------------------NA-------------------------------GDNNS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [374]
'gi|60100884|gb|AAK61308.2| class 1 KNOTTED1-like protein MKN2 [Physcomitrella patens]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MASEGSINRDTEKF-----QQELAYKCPRSSDLL---LAITTSANTAV-REHGSSAERRRRGNSGLFGNMSLLTEDEDDA-PDAQD-HEFEDNPQSEQDLELRAAIIDHP--------FYPEMVLAHVR-------------------------------VFK--IGAPG-RLRRKLDELAKKFQRFQ??D------HTSKIG-------------SD-P--EL------DHF?---------RSYVGVLTKFAEDLEEP--------FNKFIQFTDNTSK--------------------------------------------ALEEICGHY---------------------------------------------------------------------------------VDTTPD-EDNCGFDIGPLEYGAQEGDDLDTLGDENVMYPLDIDESVIVDPMASDEDI-KKALR-----------KKYG----RHIGELK---AEFNRVRKK--GKLPTSARTILKDWFNRHS-HWPYPS------------------EMEKQYLQRICGLNLKQINNWFINERKRHWSCE-------------------------------------------------------------G--KCMHPNAKFYGTS-----NGQCRGHLE?EQSNRLQ?S------------------------------------------------------------------SEETIYVKCSHAALIFEVSM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [384]
'gi|33333542|gb|AAQ11887.1| knotted 7 [Hordeum vulgare]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAYQYHHH---QD--H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGMDAAAAAAAGG----------------------------------------------------------------------------NPGGGGFAPGL-SAGGA-WE-----------GEKAAVEAHP--------LYERLLEAHVA-------------------------------CLR--VATPV-DQLPRIDAQIAARAPPPMPPASAL----------S----------GG-E--EL------DLFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------TLQSLTGASPGEG-----------------------------------------------------------------------------TGATMSDDEDN---PVDSESNMFDGN-D-VSD-GMGFG--MLTEGERSLVERVRQEL-KHELK-----------QGYR----EKLVDIR---EEILRKRRA--GKLPGDTASTLKAWWQAHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--TSSSSD-KSKRKR-----------------------------------------------YNSRLKTPFS?AR??SLSLSLSP-GWISFPLHSQKQNKKEQCR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [340]
'gi|4887614|dbj|BAA77820.1| homeobox gene [Oryza sativa (japonica cultivar-group)]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDQCS-GETD-MLDIGQ--EQ--------------------SSRLADHEL-KEMLL-----------KKYS----GCLSRLR---SEFLKKRKK--GKLPKDARSALLEWWNTHY-RWPYPT------------------EEDKLRLAARTGLDPKQINNWFINQRKRHWKPS-------------------------------------------------------------D--GMRFALME-GVA------------------------------------------------------------------------GG--SSGTTLYFDTGTIGP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [138]
'gi|1946222|emb|CAA96512.1| knotted1-like homeobox protein [Malus x domestica] >gi|3023961|sp|O04136|KNAP3 MALDO Homeobox protei'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAY-HNHL---SQ--DLPLHHFTDQTHHQHQQYQSDQPDPNSKPPEPHHSFQ---------------------------------------------------------------------------------------------PAPNWL---NSALLR------NFTNTDTNPTNSNNANNNGGGVSNFLNLHVTASDSAASQASNQWLSQSHRPIL------HRNHSD----VN------DDVTV---AGDSMIAAALS---------HDSADLKPDSILNKNEGGGGDG---GVMN-WQNA---------RHKAEILAHP--------LYEPLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQNVVAKYSALGNGM-VG---------------DD-K--EL------DQFM---------RNYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------TSATMSDDEDD---QVDSDANLFDEGME-GHD-SMGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--STSTVL-KSKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [427]
lcl|Smo_At4g08150_1_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MHGPCGMARWMGGPKCGLVRKW---------------------------------------------------------------------------------------------AATWPIVSVDR--------------------------------------------ELIYLCF--------------SKVE--------------------------------------------------------SEEPETTTTGGGAEIEEDISSSEVGNE--------VD--------------------PL-AKDENL-KEYLA-----------QRYG----AYIKGLK---QEFLKKKKK--GKLPKHSTEKLYEWWEAHI-KWPYPS------------------EQEKANLATDTGLDQKQINNWFINQRKRHWNPS-------------------------------------------------------------E--HDRPLSSVSARGN-----------------------------------------------TEG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [181]
'gi|15238743|ref|NP 197904.1| KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription factor [Arabidopsis thaliana] >gi|4063731|gb|'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHHNHL---SQ--DLSFNHFTDQ-----HQPPPPQPPPPPPQQQQHFQEA---------------------------------------------------------------------------------------------PPPNWL---NTALLRSSDNNNNFLNLHTATANTTTASSSD-----------SPSSAAAAAAANQWLSRSSSFLQ------RNNNNN----ASIVGDGIDDVTG---GADTMIQGEMK---------TGGGE-------NKNDGGGATAA-DGVVS-WQNA---------RHKAEILSHP--------LYEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQHVVAKYSALGAAA-QG--LVG----------DD-K--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------MGATMSDDEDE---QVESDANMFDG----GLD-VLGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTVL-KNKRKS-----------------------------------------------NAGD-------------------------------NSGRERFA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [431]
'gi|79328660|ref|NP 001031938.1| KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) [Arabidopsis thaliana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHHNHL---SQ--DLSFNHFTDQ-----HQPPPPQPPPPPPQQQQHFQEA---------------------------------------------------------------------------------------------PPPNWL---NTALLRSSDNNNNFLNLHTATANTTTASSSD-----------SPSSAAAAAAANQWLSRSSSFLQ------RNNNNN----ASIVGDGIDDVTG---GADTMIQGEMK---------TGGGE-------NKNDGGGATAA-DGVVS-WQNA---------RHKAEILSHP--------LYEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQHVVAKYSALGAAA-QG--LVG----------DD-K--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------MGATMSDDEDE---QVESDANMFDG----GLD-VLGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTVL-KNKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [419]
'gi|21554222|gb|AAM63298.1| KNAT3 homeodomain protein [Arabidopsis thaliana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHHNHL---SQ--DLSFNHFTDQ-----HQPPPPQPPPPPPQQQQHFQEA---------------------------------------------------------------------------------------------PPPNWL---NTALLRSSDNNNNFLNLHTATANTTTASSSD-----------SPSSAAAAAAANQWLSLSSSFLQ------RNNNNN----ASIVGDGIDDVTG---GADTMIQGEMK---------TGGGE-------NKNDGGGATAA-DGVVS-WQNA---------RHKAEILSHP--------LYEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQHVVAKYSALGAAA-QG--LVG----------DD-K--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------MGATMSDDEDE---QVESDANMFDG----GLD-VLGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTVL-KNKRKS-----------------------------------------------NAGD-------------------------------NSGRERFA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [431]
'gi|23197862|gb|AAN15458.1| KNAT3 homeodomain protein [Arabidopsis thaliana] >gi|21539535|gb|AAM53320.1| KNAT3 homeodomain prote'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIQGEMK---------TGGGE-------NKNDGGGATAA-DGVVS-WQNA---------RHKAEILSHP--------LYEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQHVVAKYSALGAAA-QG--LVG----------DD-K--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------MGATMSDDEDE---QVESDANMFDG----GLD-VLGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTVL-KNKRKS-----------------------------------------------NAGD-------------------------------NSGRERFA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [306]
'gi|4098246|gb|AAD00253.1| homeobox 2 protein [Lycopersicon esculentum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQEEGGLGLMGSSNTSGLGGGDIS-SMMIS-SEDHHNRNLNHYNQLKSEIATHP--------LYEQLLSAHVA-------------------------------CLR--VRTPI-DQLPLIDAQLTQSHNLLRSYASSQQQQQQHSLSHH----------ER-Q--EL------DNFL---------AQYLLVLCSFKEQLQQH----VRVHAVEAVMACREIEQ--------------------------------------------NLQLLTGATLGEG-----------------------------------------------------------------------------TGATMSDDEDELQMDFSLDVSGGD-----AHD-LMGMGFGLPTESERSLMERVRQEL-KIELK-----------QGFR----SRIEDVR---EEILRKRRA--GKLPGDTTTVLKNWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------S--QSVTSL-KSKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [310]
'gi|51535639|dbj|BAD37613.1| KNOX family class 2 homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|51535417|dbj|B'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHYQDHA------------LAMDAAAAAAETGGHHHPGFVG------------------------------------AG-----GVV--------------------------GGGGGG---------GWE---------REKAAIAAHP--------LYERLLEAHVA-------------------------------CLR--VATPV-DQLPRIDAQIAARPPPLAAATAAAAAA-AAGGAPS----------GG-E--EL------DLFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------TLQSLTGASPREG-----------------------------------------------------------------------------SGATMSDDEDN---QVDSESNMFDGN-D-GSD-GMGFGPLMLTEGERSLVERVRQEL-KHELK-----------QGYR----EKLVDIR---EEILRKRRA--GKLPGDTASTLKAWWQAHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--ASSSSD-KSKRKR-----------------------------------------------YRVV-------------------------------DF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [317]
'gi|3116212|dbj|BAA25921.1| homeobox gene [Nicotiana tabacum]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAYNPNHM---SQ--EMDMHHFSDENSAVLRSILPEQLAQSSPDVKP-LDHQ---------------------------------------------------------------------------------------------QPPTWL---NSAILR-------------QESHYTGTGGRGVGENFLNLHSNSESSAAASQASNQWLSRS----------------------ILRRNVSDVQTS---NNSSAVIAAADLKNDDGNNNNDNGNNNAGGQLTDSEVVGGGGT-DGILN-WQNA---------GYKAEILAHP--------LFEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQQVVAKYSTLGQNI-------G----------DD-K--EL------DQFL---------THYVLLLCPFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------TGATMSDDEDD---QVDSEANLFDGSLD-GHD-GMAFG--LPTESERSLMERVRQEL-KHDLK-----------QGYK----EKLVDIR---EEILRKRRA--GKLPGDTTSVLKAWWQSHA-KWPYPT------------------EEDKAKLVQETGLQLKQINNWFINQRKRDWHSN-------------------------------------------------------------A--SSSTTS-KSKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [422]
'gi|4098244|gb|AAD09582.1| homeobox 1 protein [Lycopersicon esculentum]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DARK---------------------------------------------------------------------------------------------SPPTWL---NTSLLR---------QQHSQFGNSSSPS--------------SAAAAAAVAGGNNFLHLQTSNSD------SSNSNQWLSPTAAAGGGGNGGGG---GHNDELSESMNFAKKMSQQHSGGGEENN----NNNNNNNNNNN-EEENS-WERE---------KCKADILNHP--------LYDQLLSAHVS-------------------------------CLR--IATPV-DQLPRIDAQLAQSQNVVAKYSVLGQGQ-PP----L----------DD-K--DL------DQFM---------THYVLLLSSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------SLQSLTGVAPGEG-----------------------------------------------------------------------------TGATMSDDDDD---QADSDTNFLDGGFD-GPD-SMGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLARETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--STSSSQ-KSKRKS-----------------------------------------------AGEI-------------------------------KQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [392]
'gi|30683467|ref|NP 196667.2| KNAT4; transcription factor [Arabidopsis thaliana] >gi|26451634|dbj|BAC42914.1| putative homeobox'     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHNNHF---NH--FT-------------DQQQHQPPPPPQQQQQQHFQES---------------------------------------------------------------------------------------------APPNWLLRSDNNFLN---------------------------LHTAASAAATSSDSPSSAAANQWLSRSSSFLQ------RGNTAN-NNNNETSGDVIEDVPG---GEESMI----------------------------------GEK-KEAER-WQNA---------RHKAEILSHP--------LYEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQNVVAKYSTLEAAQ---GLLAG----------DD-K--EL------DHFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSFTGVSPGEG-----------------------------------------------------------------------------TGATMSEDEDE---QVESDAHLFDGSLD-G----LGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKSWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTVS-KNKRR-----------------------------------------------------------------SNAGEN------------SGRD---R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [393]
'gi|9795158|emb|CAC03454.1| HOMEOBOX PROTEIN KNOTTED-1 LIKE 4 (KNAT4) [Arabidopsis thaliana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHNNHF---NH--FT-------------DQQQHQPPPPPQQQQQQHFQES---------------------------------------------------------------------------------------------APPNWLLRSDNNFLN---------------------------LHTAASAAATSSDSPSSAAANQWLSRSSSFLQ------RGNTAN-NNNNETSGDVIEDVPG---GEESMI----------------------------------GEK-KEAER-WQNA---------RHKAEILSHP--------LYEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQNVVAKYSTLEAAQ---GLLAG----------DD-K--EL------DHFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSFTGVSPGEG-----------------------------------------------------------------------------TGATMSEDEDE---QVESDAHLFDGSLD-G----LGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKSWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTVS-KNKRRR-----------------------------------------------YMESLNLEGFLYEAMQVKTAEET-VEIKL------ACRDPKAL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [419]
'gi|1045044|emb|CAA63131.1| KNAT4 homeobox protein [Arabidopsis thaliana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHNNHF---NH--FT-------------DQQQHQPPPPPQQQQQQHFQES---------------------------------------------------------------------------------------------APPNWLLRSDNNFLN---------------------------LHTAATAAATSSDSPSSAAANQWLSRSSSFLQ------RGNTAN-NNNNETSGDVIEDVPG---GEESMI----------------------------------GEK-KEAER-WQNA---------RHKAEILSHP--------LYEQLLSAHVA-------------------------------CLR--IATPV-DQLPRIDAQLAQSQNVVAKYSTLEAAQ---GLLAG----------DD-K--EL------DHFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSFTGVSPGEG-----------------------------------------------------------------------------TGATMSEDEDE---QVESDAHLFDGSLD-G----LGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKSWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTVS-KNKRR-----------------------------------------------------------------SNAGEN------------SGRD---R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [393]
'gi|6016226|sp|O22300|LET12 LYCES Homeobox protein knotted-1-like LET12 >gi|2529703|gb|AAC49918.1| class II knotted-like homeodo'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEF-QDHF---SQ--EMVLHQQQQQQ----QQQQNAVLRSMLPESPHHDARK---------------------------------------------------------------------------------------------SPPTWL---NTSLLR---------QQHSQFGNASSPS--------------SAAAAAAVAGGNNFLHLQTSNSD------SSNSNQWLSPTAAAGGGSNGGGS---GHNDELSESMNFAKKMSQQHSGGGEENN----NNNNNNNNNNN-EEENS-WERE---------KCKADILNHP--------LYDQLLSAHVS-------------------------------CLR--IATPV-DQLPRIDAQLAQSQNVVAKYSVLGQGQ-PP----L----------DD-K--DL------DQFM---------THYVLLLSSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------SLQSLTGVAPGEG-----------------------------------------------------------------------------TGATMSDDDDD---QADSDTNFLDGGFD-GPD-SMGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVDIR---EEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--STSSSQ-KSQTQE-----------------------------------------------C-----------------------------------R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [426]
'gi|15236649|ref|NP 194932.1| KNAT5 (ARABIDOPSIS THALIANA HOMEOBOX 1 GENE); transcription factor [Arabidopsis thaliana] >gi|1722'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSFNSSHLLPPQE--DLPLRHFTDQSQQPPPQRHFSETPSLVTASFLNLPTT------------------------------------------------------------------------------------------------------------------------------------LTTADSDLAPPHRNGDNSVADTNPRWLSFHSEM---------------QNTGEVRSEVIDGVNA---DGETIL-----------------------------------GV-VGGED-WRSA---------SYKAAILRHP--------MYEQLLAAHVA-------------------------------CLR--VATPV-DQIPRIDAQLSQLHTVAAKYSTLGVVV------------------DN-K--EL------DHFM---------SHYVVLLCSFKEQLQHH----VCVHAMEAITACWEIEQ--------------------------------------------SLQSLTGVSPSES-----------------------------------------------------------------------------NGKTMSDDEDDN--QVESEVNMFDGSLD-GSDCLMGFGPLVPTERERSLMERVKKEL-KHELK-----------QGFK----EKIVDIR---EEIMRKRRA--GKLPGDTTSVLKEWWRTHS-KWPYPT------------------EEDKAKLVQETGLQLKQINNWFINQRKRNWNSN-------------------------------------------------------------S--STSSTLTKNKRKR-----------------------------------------------TGKS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [383]
'gi|453949|emb|CAA82314.1| homeodomain-containing protein [Brassica napus] >gi|1170191|sp|P46606|HD1 BRANA Homeobox protein HD1'     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEAALGMIGATV---GGGGDGD-AAVVA-EQNR---------QMKGEIATHP--------MYDQLLAAHVA-------------------------------CLR--VATPI-DQLPIIEAQLSHSHHLLRSYASTAVGF-----SHH----------DR-Q--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLQMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESERSLMERVRQEL-KLELK-----------QGFK----SRIEDVR---EEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN-------------------------------------------------------------S--HSLTSL-KSKRKH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [294]
'gi|11463943|dbj|BAB18585.1| CRKNOX3 [Ceratopteris richardii]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDKSYVE---SK--LGAPTWLSGAVQQQQVRASQQGTTNSAGSSFVNEATQ---------------------------------------------------------------------------------------------QQQSHDTPRKWCGCEAGGQCVQCSFMHLSGGGAGGGGSSVAGNGIAMTANHNQQHSAAEAAGLLAIARSGGDLAQSGQGGRGNLLDLHSDTANSSDLVEGEHG---GGE-------------------------------HGGGGHNQQ-DSQVL-WQNA---------RLKADITMHP--------LYDQLLAAHVA-------------------------------CLR--IATPV-DQLPRIDAQIAQASQIVAKYAVLGQNN---LLVGE----------EK-D--EL------DQFM---------AHYVLLLCTFKEQLQQH----VKVHAMEAVMACWELEQ--------------------------------------------SLLTLTGVSPGEG-----------------------------------------------------------------------------TGATMSDDDDD---PAESDPSIYDPAFD-THD-SGAFGPLIPTETERTLMERVRQEL-KNELK-----------NGYK----DRIVDVR---EEILRKRRA--GKLPGDTTSVLKAWWHAHS-KWPYPT------------------EDEKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSTAAM-KTKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [436]
'gi|58011289|gb|AAW62519.1| KNOTTED1-like protein [Selaginella kraussiana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGDQEQQ---AR--Q----------------------------------------------------------------------------------------------------------------------HNNDDREAAAKQMPTWL-----------------------------------------LSSRQQPPPSAQCDEEAWSSHH-----------HHQQQQASSSSYENP------RT---TTQGLLQDDDKAEHGL-------------------GVGSGDMV-EECAR-MQSA---------KLKADIVTHP--------LYEQLLEAHVS-------------------------------CLR--IATPV-DQLGKIDGQIAQCHQLIAKYYILANHQ---LLCGN----------SK-D--EL------DQFM---------AHYVMLLRSFKDQLQHH----VRVHAKEAVMACWELEQ--------------------------------------------SLLGLTGVSPGEG-----------------------------------------------------------------------------SGATMSDDETT---EQEQQCES-----DLWQD-NLGFGPLIPTETERTLMERVRQEL-KHELK-----------HGYR----ARIVDVR---?EILRKRRA--GKLPGDTTSVLKAWWHAHS-KWPYPT------------------EDEKARLVQETGLELKQINNWFINQRKRNWHHH-------------------------------------------------------------P--SSSAST-TSKLKC-----------------------------------------------KS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [363]
'gi|8493589|gb|AAF75812.1| Strong similarity to Homeobox Protein HD1 from Brassica napus gi|1170191, and contains a lactate/mala'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGATV-----GGDGD-TAVVA-EQNR---------QLKGEIATHP--------MYEQLLAAHVA-------------------------------CLR--VATPI-DQLPIIEAQLSQSHHLLRSYASTAVGY------HH----------DR-H--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLPMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESERSLMERVRQEL-KLELK-----------QGFK----SRIEDVR---EEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN-------------------------------------------------------------S--HSLTSL-KSKRKH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [283]
'gi|26451690|dbj|BAC42940.1| putative homeodomain transcription factor KNAT6 [Arabidopsis thaliana]'                                 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMGATV-----GGDGD-TAVVA-EQNR---------QLKGEIATHP--------MYEQLLAAHVA-------------------------------CLR--VATPI-DQLPIIEAQLSQSHHLLRSYASTAVGY------HH----------DR-H--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLPMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESERSLMERVRQEL-KLELK-----------QGFK----SRIEDVR---EEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN-------------------------------------------------------------S--HSLTSL-KSKRKH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [284]
'gi|18407708|ref|NP 564805.1| KNAT7; DNA binding / transcription factor [Arabidopsis thaliana] >gi|11878230|gb|AAG40858.1| homeo'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEAALGMMGATV-----GGDGD-TAVVA-EQNR---------QLKGEIATHP--------MYEQLLAAHVA-------------------------------CLR--VATPI-DQLPIIEAQLSQSHHLLRSYASTAVGY------HH----------DR-H--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLPMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESERSLMERVRQEL-KLELK-----------QGFK----SRIEDVR---EEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN-------------------------------------------------------------S--HSLTSL-KSKRKH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [291]
'gi|21618231|gb|AAM67281.1| homeodomain-containing protein HD1, putative [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGASV-----GGDGD-AAVVA-EQNR---------QLKGEIATHP--------MYEQLLAAHVA-------------------------------CLR--VATPI-DQLPIIEAQLSQSHHLLRSYASTAVGY------HH----------DR-H--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLPMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESEKSLMERVRQEL-KLELK-----------QGFK----SRIEDVR---EEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN-------------------------------------------------------------S--HSLTSL-KSKRKH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [283]
'gi|5802260|gb|AAD51632.1| KNOX1 homeodomain protein [Acetabularia acetabulum]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN---DMDFAALFNQHEGNNPDNLQPNAPPYMLSPQQNAAATMPKSHC-SGDNT-LMLS---------DMGEQVIMHP--------LYPDLVKAIMD-------------------------------CRK--VGGMD-ESRHHIQIRTEQVLEDLHRKREQYQITGR-------------MPALD-P--EL------DQFL---------RQYIQVLDELHAELLNI----NR----EADNILHMFTT--------------------------------------------QIAEVINMPMDPRSMHA-------------------------------------------------------------------------RNAFNAQSNIDMTW----------------------------------FEIRNEQEQ-RVLLK-----------QKYR----QELLALK---EEFSKRKKR--GKLPTHSIEVLKSWWKEHI-AWPYPT------------------DSAKRSLASQTNLTSIQINNWFINQRKRHWHKLFPEGVP----------------------------------------------------------NSQEEALRSLKARGMLGMDSSGPMRLMSMDIESQETQEVEQETEDIQTPNEFQFQSAFLNEHEQMMDEAGFTSRPNVQLPDAI-SQFQSQLGQIRKDSDE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [382]
'gi|14348597|gb|AAK61309.1| class 2 KNOTTED1-like protein MKN1-3 [Physcomitrella patens]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMAFNNLSHDVSLQ--QFPELWESSRFSQRHDTLDADQHTQGFDDTQFPKEPLEPNTNLH-------------QVAMEIQPNATIIGDESSRGRNPVVNESDDREDDNHLLGTEDGIVKNGRTWLNSALLREQNQASEDRSGYGDHNAAERW----------------------CPVCSASGSQSCMCGMPMHAGDSSTISFPNQSTYTHWLSMQGANMLASQHRTGGEVDAKAAGFTVSPQSTKMATELNLSPAGHGRDNHALFTDPRHSVAQGGSRYAEDYERTEHQTDWEGA-TQKME-WEQA---------RDKFLIVAHP--------LYPDLLNAHAS-------------------------------CLR--VGTPV-DQLPHIEAQLTQARHVTSKYSVLHPDHLEI---------------TEDEKTEL------DQFM---------AQYIMLLCSFKDHLQQH----VYYDVTEAMMSCWELEQ--------------------------------------------ALHNLTGVSAGES-----------------------------------------------------------------------------TGATMSEEDED----YDSDYGAYDAHMD-PQD-SGGFGPLVPTESERTLMERVRQEL-KYELK-----------QGYR----ARIVDVR---EEILRKRRA--GKLPEGTTTVLKAWWQAHS-KWPYPT------------------EDEKERRIQETGLELKQVNNWFINQRKRNWHSN-------------------------------------------------------------P--LSSSSELKSKRKK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [533]
lcl|Smo_At4g08150_12_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGSSSQSG---DE--AAAADSSKQQQQQM--------------------------------------------------------------------------------------------------------------------GMPTWL--------------------------NSALSRQTSSQQQAQDQQQQAWPNPSSSSYTNWLSAAGATSTGVR---RLEQQQASATTNTSPATA-TTTT---TTELLVEQDRKAAVAAAAMLMGAVEADVTSHGSVPGDPDLDEC-AAARY-QMNA---------GLKADIVTHP--------LYEQLLEAHVA-------------------------------CLR--IATPV-DQLSRIDGQISQCHHAIAKYSILANHQ---LLCGS----------SK-E--EL------DHFM---------AHYVMLLKSFKDQLQHH----VRVHAKEAVMACWELEQ--------------------------------------------SLISLTGAAPGEG-----------------------------------------------------------------------------TGATMSDDEDEQQQPQQEQQQQQQSDSDYWQD-NLGFGPLIPTETERTLMERVRQEL-KHELK-----------QGYR----ARIVDVR---EEILRKRRA--GKLPGDTTSVLKAWWHAHS-KWPYPT-------------VEMWQEDEKARLVQETGLELKQINNWFINQRKRNWHHH-------------------------------------------------------------P--SSSTNS-STKAKC-----------------------------------------------KR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [425]
'gi|14149141|dbj|BAB55660.1| KNOX family class 2 homeodomain protein [Oryza sativa (japonica cultivar-group)]'                       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQGGDHGGMEMGVGSFTGGGGGGECSSSSATAAAAAAAAAAAAAAEAEERQLLKGEIAVHP--------LCEQLVAAHVG-------------------------------CLR--VATPI-DHLPLIDAQLAQSSGLLHSYAAHHRPFLSPHDKQEL-----------------------DSFL---------AQYMMLLCSFREQLQQH----VRVHAVEAVMACREIEQ--------------------------------------------SLQDLTGATLEEG-----------------------------------------------------------------------------TGATMSEDEDE---TAPMLEGPMDMGSD-GHD-LMGFGPLMPTDSERSLMERVRQEL-KIELK-----------QGFK----SRIEDVR---EEILRKRRA--GKLPGDTTTILKQWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN-------------------------------------------------------------S--QTSTL--KSKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [314]
lcl|Smo_At4g08150_5_2_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?FNASTAA---AS--DTRHAGTTTSSTAITIATAGSTKDQAATDATVSRARSRQHDDDG-------------DGGVEDEDDEEEQAVEAGGGRRREEDGGGRDQREQALDEGGDQDDQGGDSRNPSLLLLRGKNHKAGGGGGLAPSGPTWL---SNAVMPRQPSPSPVAAAGAPNYSQWLAMPQPQVTSTDLGEQSHDAAAAAAAAAKGFLEH------------------------LHGDTANSGGG---GGGDMVAEEQ---------------------------GGGGGG-MDSKL-WQSA---------RLKADLVTHP--------LYEQLLSAHIS-------------------------------CLR--TATPV-DQLPKIDAQLAHSSQVAAKYSILAANE---QGLSK----------DK-D--EV------NEFM---------AHYVTLLRSFKDQLQQH----VRVHAMEAVVACWELEQQREEEEEEEEEEEEEASITQSHDLKAPPFSSKRENSRRVPAFSTAFSSVPGVSPGEG-----------------------------------------------------------------------------TGATMSEDEDDQ--QADSDSGYYDAGMD-GHD-FTGFGPLIPTETERTLMERVRHEL-KIELK-----------QGYK----AKINDVR---EEILRKRRA--GKLPGDTTSVLKTWWHAHS-KWPYPS------------------EDDKARLVQETGLELKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTSL-KNKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [538]
lcl|Smo_At4g08150_9_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?AGRAGIHNIVTAVAARINIIGLHQEHL-------------------------------------------------------HWNTTGC-GSNVS-LSDS---------EI---ISGQL--------QYNEPCR------------------------------------------------------------------------------------------------------------------------------------------------------AQKFL---------------------------------------------SGTNARSWVFSLVLAAE-------------------------------------------------------------------------NE--------VMEKAD---LGEVDTDLD--------------------PL-AGNKELMMKTLM-----------KRV-----------------CFKKKRK--KKIPKEARQQLLDWWSQHQ-DHPYPN------------------GDEKSNLAQSTGLEPKQINNWFINQRKRHW-PQAA-----------------------------------------------------------RGESSQQRHSKSRK------------------------------------------LSTTKKK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [201]
lcl|Smo_At4g08150_6_2_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?LFISIDWIGLDCNTLSLDQTGIANPIAKDHHNRQQRQQQEQWWS---------------------------------------------------------------------------------------------------------------------------------------------DRDGSIDRRST-------------------------------------EEPAVVRLFSAERILLLLTVLSAE-------------------------------------------------------------------------NEDASETYEDFMEEAESGGIGEVDTDLD--------------------PL-AGDKEL-KKVLM-----------KRYG----GYIKGLT---QEYLKKKKK--GKLPKESRQQLLDWWSQHQ-DHPYPN------------------ENQKSNLAQSTGLDPKQINNWFINQRKRHWNPQAVPFLREVSHRFLSKARYTTLKRVSPPHSLPMDWFSLLFCLAPISFGVVFFTSEECANSCQEAEGAVYKIAKRNSEVTFLRLKVEEEGIQEIVRQITTLSFLSFCVANLLFLQGRRCGGKADRT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [323]
'gi|5103731|dbj|BAA79227.1| knotted1-type homeobox protein OSH10 [Oryza sativa]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EL-KSHLL-----------NKYS----GYLSSLW---RELSKKKKK--GKLPRDARQKLLHWWQLHY-RWPYPS------------------ELEKAALAESTGLDAKQINNWFINQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [77]
'gi|14149137|dbj|BAB55658.1| KNOX family class 2 homeodomain protein [Oryza sativa (japonica cultivar-group)]'                       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEL------DLFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMGCWELEQ--------------------------------------------SLQSLTGASPGEG-----------------------------------------------------------------------------TGATMSDDEDN---QVDSEANMFDGN-D-GSD-GMGFGPLMLTEGERSLVERVRHEL-KNELK-----------QGYK----EKLVDIR---EEILRKRRA--GKLPGDTASILKAWWQAHS-KWPYPT------------------EDDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--ASSGE--KTKKKRNVTGDGGAEQSW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [212]
lcl|Smo_At4g08150_2_1_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?E--------------------------------------------------------SEEPETTTTGGGAEIEEDISSSEVGNE--------VD--------------------PL-AKDENL-KEYLA-----------QRYG----AYIKGLK---QEFLKKKKK--GKLPKHSTEKLYEWWEAHI-KWPYPS------------------EQEKANLATDTGLDQKQINNWFINQRKRHWNPS-------------------------------------------------------------E--HDRPLSSVSARGN-----------------------------------------------TEG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [139]
'gi|4887620|dbj|BAA77823.1| homeobox gene [Oryza sativa (japonica cultivar-group)]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQ---------AQYMMLLCSFREQLQQH----VRVHAVEAVMACREIEQ--------------------------------------------SLQDLTGATLEEG-----------------------------------------------------------------------------TGATMSEDEDE---TAPMLEGPMDMGSD-GHD-LMGFGPLMPTDSERSLMERVRQEL-KIELK-----------QGFK----SRIEDVR---EEILRKRRA--GKLPGDTTTILKQWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN-------------------------------------------------------------S--QTSTL--KSKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [196]
'gi|50916376|ref|XP 468590.1| Putative homeobox gene [Oryza sativa (japonica cultivar-group)] >gi|25446694|gb|AAN74841.1| Putati'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSEDEDE---TAPMLEGPMDMGSD-GHD-LMGFGPLMPTDSERSLMERVRQEL-KIELK-----------QGFK----SRIEDVR---EEILRKRRA--GKLPGDTTTILKQWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN-------------------------------------------------------------S--QTSTL--KSKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [143]
lcl|Ppa_At4g08150_2_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTRIKT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDYAGTAYDQSMD-YHD-SGGYGPLVPTETERSLMER-----------------------GYR----SKIEDVR---EEILRKRRA--GKLPEGTTTVLKAWWQAHS-KWPYPT------------------EDEKEQLIQETGLELKQVNNWFINQRKRNWHSN-------------------------------------------------------------P--LVSSSDMKNKVRK-----------------------------------------------?-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [133]
lcl|Ppa_At4g08150_1_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD-PQD-SGGFGPLVPTESERTLMERVRQEL-KYELKQAYFVVMHYHYQGYR----ARIVDVR---EEILRKRRA--GKLPEGTTTVLKAWWQAHS-KWPYPT------------------EDEKERLIQETGLELKQVNNWFINQRKRNWHSN-------------------------------------------------------------P--LSSSSELKSKRKK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [137]
'gi|14090233|dbj|BAA77821.2| homeobox gene [Oryza sativa (japonica cultivar-group)]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAVMGCWELEQ--------------------------------------------SLQSLTGASPGEG-----------------------------------------------------------------------------TGATMSDDEDN---QVDSEANMFDGN-D-GSD-GMGFGPLMLTEGERSLVERVRHEL-KNELK-----------QGYK----EKLVDIR---EEILRKRRA--GKLPGDTASILKAWWQAHS-KWPYPT------------------EDDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--ASSGE--KTKKKRNVTGDGGAEQSW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [183]
'gi|14090235|dbj|BAA77822.2| homeobox gene [Oryza sativa (japonica cultivar-group)]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAVMACWELEQ--------------------------------------------TLQSLTGASPREG-----------------------------------------------------------------------------SGATMSDDEDN---QVDSESNMFDGN-D-GSD-GMGFGPLMLTEGERSLVERVRQEL-KHELK-----------QGYR----EKLVDIR---EEILRKRRA--GKLPGDTASTLKAWWQAHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--ASSSSD-KSKRKR-----------------------------------------------YRVV-------------------------------DF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [178]
'gi|50943641|ref|XP 481348.1| OSH45 [Oryza sativa (japonica cultivar-group)] >gi|28564620|dbj|BAC57787.1| OSH45 [Oryza sativa (j'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAVMACWELEQ--------------------------------------------NLQSLTGASPGEG-----------------------------------------------------------------------------TGATMSDGEDD---QADSEANMYDPSLD-GAD-NMGFG--LPTESERSLMERVRQEL-KHELK-----------QGYK----EKLIDIR---EEILRKRRA--GKLPGDTTSTLKAWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTSV-KTKRKR-----------------------------------------------YQIN-------------------------------LCTSVI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [181]
'gi|1805619|dbj|BAA08554.1| OSH45 [Oryza sativa (japonica cultivar-group)]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAVMACWELEQ--------------------------------------------NLQSLTGASPGEG-----------------------------------------------------------------------------TGATMSDGEDD---QADSEANMYDPSLD-GAD-NMGFG--LPTESERSLMERVRQEL-KHELK-----------QGYK----EKLIDIR---EEILRKRRA--GKLPGDTTSTLKAWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN-------------------------------------------------------------P--SSSTSV-KTKRKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [171]
lcl|Ppa_At4g08150_4_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?TPDEEDNFGSDIGTKDM-SQDLNDLEILGEENLMYTADIDESIVIDPDAADEEL-KKMLR-----------LKYG----KHIAGLK---AEFNRVRKK--GKLPTNARQILKDWFSRHS-YWPYPS------------------EMEKAYLQRLCGLNLKQINNWFINERKRHWSCE-------------------------------------------------------------G--KCMYPNTKFYPRDGHVDPNNHGEGYLEQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [166]
'gi|1045046|emb|CAA63132.1| KNAT5 homeobox protein [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KEL-KHELK-----------QGFK----EKIVDIR---EEIMRKRRA--GKLPGDTTSVLKEWWRTHS-KWPYPT------------------EEDKAKLVQETGLQLKQINNWFINQRKRNWNSN-------------------------------------------------------------S--STSSTLTKNKRKR-----------------------------------------------TGKS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [104]
lcl|Ppa_At4g08150_7_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?TPDEDDNNGFDIGPMEYGAQASDDLYLPADENLMYPLDIDESVVVDPMASDEEI-KKALR-----------KKYG----RHIGELK---AEFNRVRKK--GKLPSSARSILKDWFNRHS-YWPYPS------------------EMEKQYLQKLCGLNLKQINNWFINERKRHWSCE-------------------------------------------------------------G--KCMHPNTKFYSNA-----NGQCNGHLDAGKNPAFSSYVIPPSLNESMSRLTSAHTSTGLRPKIFDQTPADNCFEGYSFFPTFR-NEPVFHRRCIRSQLGSPVDTEIDLMLSTQLNNPSEFGKA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [256]
lcl|2866_Cre_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RYG----SQLVQVA---ASLAQRPKV--GKLPPAATQLLKGWWDDNF-VWPYPS------------------EEDKKQLGEAAALNNTQINNWFINQRKRHWHKV-------------------------------------------------------------S--PAAVGRLRA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [87]
lcl|Ppa_At4g08150_3_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?LLSESIEKPKGAKYGILLIKLRSNHDLTES--------------------------------------------V--EVCA-------------------------------------------------------------------------------------ATPD-EDNCGFDIGPLEYGAQEGDDLDTLGDENVMYPLDIDESVIVDPMASDEDI-KKALR-----------KKYG----RHIGELK---AEFNRVRKK--GKLPTSARTILKDWFNRHS-HWPYPS------------------EMEKQYLQRICGLNLKQINNWFINERKRHWSCE-------------------------------------------------------------G--LVSVRTMSSLDAIKQAITRKLEKDLMKMLSRVRLQMF------------------------------------------------------------------EDLEEYFSSIAESLD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [226]
;
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