#NEXUS 
[MacClade 4.08 registered to Tomoaki Nishiyama, National Institute for Basic Biology]


BEGIN DATA;
	DIMENSIONS  NTAX=43 NCHAR=965;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
[                                                                                                                                             10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960   ]
[                                                                                                                                             .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]

'gi|22331028|ref|NP 187874.2| HUA1 (ENHANCER OF AG-4 1) [Arabidopsis thaliana] >gi|16797661|gb|AAK01470.1| floral homeotic prote'    M-----------------------------------------------------------------AHRQLYSYALQPSYAAAASTVSPAPPPPQQPLPPKTGLSSLYGSSADHYFPDTTYRFLARDGSEALSNYSGTLASSSSMYHHLPNTTASHLAYPQLLQHQEVAWPPGVEVPGAASAVEPLPPGVKRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPKLESTSHLPIYPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAV--------------------------------------------------------------------------------------SVETQ--------DSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVT-------FTPALYHNSKGLPVRS---GEVDCPFYLKTGSCKYGATCRYNHPERTAF--------------------------------------------------------------------------------------------------------------------------------------------IPQAAGVNYSLVSSNTANLNLGLVTPATSFYQT---------LTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAM--TKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDH-----PP--------------------------------------------PGEVMAKTTSEADAAGATNTDTTQ------------------------------------------------------------------------   [524]
'gi|12321969|gb|AAG51026.1| zinc finger protein, putative, 5'' partial; 146-2518 [Arabidopsis thaliana]'                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAV--------------------------------------------------------------------------------------SVETQ--------DSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVT-------FTPALYHNSKGLPVRS---GEVDCPFYLKTGSCKYGATCRYNHPERTAF--------------------------------------------------------------------------------------------------------------------------------------------IPQAAGVNYSLVSSNTANLNLGLVTPATSFYQT---------LTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAM--TKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDH-----PP--------------------------------------------PGEVMAKTTSEADAAGATNTDTTQ------------------------------------------------------------------------   [328]
'gi|54290410|dbj|BAD61280.1| zinc finger protein 3-like [Oryza sativa (japonica cultivar-group)]'                                    M---------------------------------------------------------------------------------------------------SDPFYPHGHGGAAGGEGAAAAGYSSYEVDLIAARYGGRPLANPSSA---------------------------------AADLDARLAGARRSMGVLYHQPIMGSHSTVEQIEALYSSNTMTKRPRLESS--LPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNA------------------------------------------------------------------------------------LASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRP---GEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFP---------------------------------------------------------------------------------------------------------------------------------------------LPLGQTILPT-PESM---LLNSSANFMQG-----FDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDH-----PP--------------------------------------------PQEAIAKVSNSGS-----------------------------------------------------------------------------------   [462]
'gi|54290411|dbj|BAD61281.1| zinc finger protein 3-like [Oryza sativa (japonica cultivar-group)]'                                    M---------------------------------------------------------------------------------------------------SDPFYPHGHGGAAGGEGAAAAGYSSYEVDLIAARYGGRPLANPSSA---------------------------------AADLDARLAGARRSMGVLYHQPIMGSHSTVEQIEALYSSNTMTKRPRLESS--LPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKE-AANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNA------------------------------------------------------------------------------------LASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRP---GEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFP---------------------------------------------------------------------------------------------------------------------------------------------LPLGQTILPT-PESM---LLNSSANFMQG-----FDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDH-----PP--------------------------------------------PQEAIAKVSNSGS-----------------------------------------------------------------------------------   [461]
lcl|Smo_HUA1_1_1_unnamed_protein_product                                    ?GRRRADRRRMDY------------YQPVAPPGGSP-------------------------------------------------------------FVGYEQPGGVVDHPSSFQEWRQEGSSQQQAAAPPNPTGLEE-------AMW-GLSLQSAGDHPGMVDMAAPGGGGGGGGGG-----------------------------------------------------------------------------------------------------GGGG-GPYPERPGEQDCVYYMRTGLCAFGMSCKFNHPPNRKLA------------------------------------------------------------------------------------AAIARG-K-------GEYPERPGQPECQYFLKTGTCKFGSTCKYDHPRDKAG---------------------------------IQSRVQLNIVGLPYRP---GEKECAYYMRTGSCKYGVTCKFHHPQPAVVPSI-------------------------Y-AAAAAAAAAGASQPGTPNAATGTPQHFQPGWPTMRP---FPSPRLQAGASSYTPLLLPSPQGVVSIPGWS---------TY-----------HDQQLYLPGASSP---------------------------TTADYSPFVPGSPTMGLPAGLREHKGGGGGDAFPERPGVAECQYYLKTGDCKYGASCRFHHPRDRISASA---------PTMLSPMGLPLRTGVQPCSYYIRFGICKFGPTCKFDH-----PL---AAIYGFGSEVPASPPSIHHHHHHHLASRATLVELEGQDQQQ-QQHIQGSSSSGSLSSTSTAA------GSSTSTMGLSTTTSVDSASVSSPAAAPPPISAEI-----------------------------------   [519]
lcl|Smo_HUA1_2_1_unnamed_protein_product                                    M----------DY------------YQPVAPPGASA-------------------------------------------------------------FVGYEQPGGVVDHPSSFQEWRQEGSSQQQAAAPPNPTGLEE-------AMW-GLSLQSAGDHPGMVDMAAPGGGGGGGGGG-----------------------------------------------------------------------------------------------------GGGG-GPYPERPGEQDCVYYMRTGLCAFGMSCKFNHPPNRKLA------------------------------------------------------------------------------------AAIARG-K-------GEYPERPGQPECQYFLKTGTCKFGSTCKYDHPRDKAG---------------------------------IQSRVQLNIVGLPYRP---GEKECAYYMRTGSCKYGVTCKFHHPQPAVVPSI-------------------------YAAAAAAAAAAGASQPGTPNAATGTPQHFQPGWPTMRP---FPSPRLQAGASSYTPLLLPSPQGVVSIPGWS---------TY-----------HDQQLYLPGASSP---------------------------TTADYSPFVPGSPTMGLPAGLREHKGGGGGDAFPERPGVAECQYYLKTGDCKYGASCRFHHPRDRISASA---------PTMLSPMGLPLRTGVQPCSYYIRFGICKFGPTCKFDH-----PL---AAIYGFGSEVPASPPSIHHHHHHHLASRATLVELEGQDQQQ-QQHIQGSSSSGSLSSTSTAA------GSSTSTMGLSTTTSVDSASVSSPAAAPPPIS--------------------------------------   [507]
'gi|30690809|ref|NP 182306.2| nucleic acid binding [Arabidopsis thaliana] >gi|62901446|sp|Q84W91|ZFNL1 ARATH Zinc finger CCCH ty'    M------------------------------------------------------------------------------------------------------------YARNPPLNGSQSAQAPDWTPADADTGLQE-------SMWR----------------------------------------------------------------------------------------------------------------------------------LGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASV------------------------------------------------------------------------------------EATVRAT--------GQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGG---------------------------------SMSHVPLNIYGYPVRE---GDNECSYYLKTGQCKFGITCKFHHPQPAGTTVP-----------------------------------PPPASAPQFYPSVQSLMPDQYGGPSSSLRVARTLLPGSYMQGAYGPMLL--TPGVVPIPGWS---------PYS-----------APV----SPALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYP---------------SLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRA---------NCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDH-----PM--GTIRYNPSASSLADAPVAPYPVSSLLGALAAAP------SSSSTELIAGGAKDAYMTGVPTSR------STSNISAGLIFSQSGGSIPFSELQLSSQSSLPLTGSRITRQGREIRRSF--------------------   [468]
'gi|57900442|dbj|BAD87735.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)] >gi|62901482|sp|Q5JLB5|ZFNL2'     M--------------------------------------------------------------------------------DDAGRASAPAVVTVTASAAAPTPPLPPPPPPPPPSQLPATAAATDEPSHDPAALYGE-------GMWQQMTM---------------------SGSG-----------------------------------------------------------------------------------------------------AMQP-GPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLA------------------------------------------------------------------------------------IASARM-K-------GEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAG---------------------------------IAGRVQLNTLGYPLRP---SEKECAYYLKTGQCKYGNTCKFHHPELFNAMAS---------------------------SRGSPIYPSVHS----SATAGPPYTGTMASWAFPR-GSFIPS-PRWQNPSNYAPMIV--PQGLVQVPSWN---------SY-----------TGQMM---PVSSSESRLQSPGAQQTYGTSQQVDASAG---NQGMLSPYRSS------SYPV-PQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTP---------DCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM--GVYAYGSASTNVPMV----------------------------RRLLQSPSASAYTS---------------------------------------------------------------------------------   [439]
'gi|77554746|gb|ABA97542.1| zinc finger protein [Oryza sativa (japonica cultivar-group)]'                                    M------------AAGAGAGGGGGEGDSNGGGTSPGGVSAAAPAIGPH---------------------------------------------------------------------------------HLGVAAAEE-------AMW-QMTL---------------------GGGE-----------------------------------------------------------------------------------------------------SMES-TPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLA------------------------------------------------------------------------------------VAAARM-N-------GEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAA---------------------------------LANRVQLNVLGYPMRP---NEKECAYYLRTGQCKFASTCKFHHPQPSNTMVA---------------------------VRNSMYSPGQSA----TSPGQHTYPGAVTNWTLSRSASFIAS-PRWPGHSGYAQVIV--PQGLVQVPGWN---------PY-----------AAQM----GSSSPDDQQRTPVTTQYYG-SRQSETGGMG--DHGMYQSYQGG------SVPV-GVYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAP---------NCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDH-----PM--GTLMYGSATSPRGDVSSMHYQL--------------SPSPGHPGILLDGGSGRSHRVPQSDSQ------QIPSGDGNAEREAS-------------------------------------------------------   [454]
'gi|3738297|gb|AAC63639.1| unknown protein [Arabidopsis thaliana]'                                    M--------------------------------------TDVSPLSDQTTLLPELASEVRKLSVCHMLATRALSPPKDLTVILVGNYLVRGVFTSIFFTVHQIPKFKDMYARNPPLNGSQSAQAPDWTPADADTGLQGLACALILSNW-------------------------------------------------------------------------------------------------------------------------------------LGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASV------------------------------------------------------------------------------------EATVRAT--------GQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGG---------------------------------SMSHVPLNIYGYPVRE---GDNECSYYLKTGQCKFGITCKFHHPQPAGTTVP-----------------------------------PPPASAPQFYPSVQSLMPDQYGGPSSSLRVARTLLPGSYMQGAYGPMLL--TPGVVPIPGWS---------PYSSLTVSLLLLLQAPV----SPALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYP---------------SLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRA---------NCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDH-----PM--GTIRYNPSASSLADAPVAPYPVSSLLGALAAAP------SSSSTELIAGGAKDAYMTGVPTSR------STSNISAGLIFSQSGGSIPFSELQLSSQSSLPLTGSRITRQGREIRRSF--------------------   [553]
'gi|18396338|ref|NP 566183.1| ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding [Arabidopsis thaliana] >gi|26451016|dbj|BAC4261'    M-----------------------------------------------------------------------------------------------------------------------DFNAGVPMSSLSPLMNQD-------AMW-QMNL---------------------SSDE-----------------------------------------------------------------------------------------------------TMET-GSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELV------------------------------------------------------------------------------------IATARM-R-------GEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAG---------------------------------IAGRVSLNMLGYPLRS---NEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMM------------------------------------------VPTSGQQSY-------PWSR-ASFIAS-PRWQDPSSYASLIM--PQGVVPVQGWN---------PY-----------SGQL----GSVSPSGT----GNDQNYRNLQQNETIESGSQSQGSFSGYNPG-----SSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPP---------DCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDH-----PM--RVFTYDNTASETDEV-------------------------------VETSTGKSRRLSVSETR------QAATTSSGKDTTIDNTQQ---------------------------------------------------   [397]
'gi|6728979|gb|AAF26977.1| zinc finger protein 1 (zfn1) [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------MW-QMNL---------------------SSDE-----------------------------------------------------------------------------------------------------TMET-GSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELV------------------------------------------------------------------------------------IATARM-R-------GEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAG---------------------------------IAGRVSLNMLGYPLRS---NEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMM------------------------------------------VPTSGQQSY-------PWSR-ASFIAS-PRWQDPSSYASLIM--PQGVVPVQGWN---------PY-----------SGQL----GSVSPSGT----GNDQNYRNLQQNETIESGSQSQGSFSGYNPG-----SSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPP---------DCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDH-----PM--RVFTYDNTASETDEV-------------------------------VETSTGKSRRLSVSETR------QAATTSSGKDTTIDNTQQ---------------------------------------------------   [377]
'gi|4928917|gb|AAD33769.1| zinc finger protein 1 [Arabidopsis thaliana]'                                    M-----------------------------------------------------------------------------------------------------------------------DFNAGVPMSSLSPLMNQD-------AMW-QMNL---------------------SSDE-----------------------------------------------------------------------------------------------------TMET-GSYPERPGEPDCSYYIRTGLCRFGSTCRVNHPRDRELV------------------------------------------------------------------------------------IATARM-R-------GEYPERIGHPECEYYLKTGTCKFGVTCKFHHPRNKAG---------------------------------IAGRVSLNMLGYPLRS---NEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMM------------------------------------------VPTSGQQSY-------PWSR-ASFIAS-PRWQDPSSYASLIM--PQGVVPVQGWN---------PY-----------SGQL----GSVSPSGT----GNDQNYRNLQQNETIESGSQSQGSFSGYNPG-----SSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPP---------DCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDH-----PM--RVFTYDNTASETDEV-------------------------------VETSTGKSRRLSVSETR------QAATTSSGKDTTIDIHSSEGNKGRRRRAFKQEKNKSFLIFQKRNL------------------------   [424]
'gi|5616313|gb|AAD45720.1| zinc finger protein [Pisum sativum] >gi|62901479|sp|Q9SWF9|ZFNL PEA Zinc finger CCCH type domain cont'    M---------------------------------------------------------------------------------------------------------------------------------EFDTIPQE-------AMW-QMNL---------------------RSSE-----------------------------------------------------------------------------------------------------TMES-GPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLA------------------------------------------------------------------------------------IATARM-K-------GEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAG---------------------------------VAGRVALNILGYPLRP---NESERAYYLRTGQCKFGNTCKFHHPQPSNMVLS---------------------------MRGSTVYPTVQS---PTTPGQQSYAAGITNWSS---SSYVPS-PRWQGPSSYAPLIL--PQGVVSVPGWS---------TY-----------GGQM-------GSESPQQTMRNDQTYGTSHQGELENAG--LQGAYSQYRSG------SVPV-GFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAP---------DCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDH-----PM--GIFTYNV-ASPLADTPGRRLLG---------SSSGTAALSLSSEGLVESGTAKPRRLSLSETR------PIPPGDDNIDDEG--------------------------------------------------------   [417]
'gi|87162574|gb|ABD28369.1| Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula]'                             M---------------------------------------------------------------------------------------------------------------------------------EYDAIPQE-------AMW-QMSL---------------------RPSE-----------------------------------------------------------------------------------------------------TMES-GPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLA------------------------------------------------------------------------------------IATARM-K-------GEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAG---------------------------------VAGRVALNILGYPLRP---NESECAYYLRTGQCKFGNTCKFHHPQPSNMVLP---------------------------MRGSPVYPTVQS---PTTAGQQSYAAGITNWST---SSYIPS-PRWQGPSSYAPLIL--PQGVVSVPGWS---------TY-----------NGQM-------GSDSPQQTMRNDQTYGTSHQGDPENAG--LQGVYSQYRSG------SVPV-GFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIPAP---------DCVLSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDH-----PM--GIFTYNVSASPLAEAAGRRLLG---------SSSGTAALSLSSEGLVESGSVKPRRLSLSETR------PNPSGDDDIDDEG--------------------------------------------------------   [418]
'gi|56783956|dbj|BAD81393.1| putative floral homeotic protein HUA1 [Oryza sativa (japonica cultivar-group)] >gi|62901483|sp|Q5NA'    ME---PYAAAEGG------------GGGGGGGSTDTGLEE---------------------------------------------------------------------------------------------------------SMW-RMGL----------------GGGGGGGGE-----------------------------------------------------------------------------------------------------AVAA-GRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAA---AVLNG----------------------------------------------------------------------------GGKTTH-S-------AEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPRE-G----------------------------------SVQAVMLNSSGYPLRS---GEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSET------------------------------PNMYPPVQP---QPISSSHPYQ-HLAGWQMGRPPVLPGS----FLSGSYPPMML--PSTVVPMQGWN---------PY-----------ISPV----NQVASAGGHQTVQAGPFYGLSHQGPSAAVT--YGSQYAPLSSS-----TM----PSSSSKQEPAFPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKS---------NCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDH-----PM--GTLSYSPSASSITDLPIAPYPLNY--AVAPVAP-----PSSSSDLRPEYLLTKEFSANQSASP------GTTCGPAGAMLKAYA----------PHMLIRPQTSGA------------GGM---------VTTHGGEL   [466]
'gi|34902926|ref|NP 912810.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)]'                                 --------------------------------------------------------------------------------------------------------------------------------------------------MW-RMGL----------------GGGGGGGGE-----------------------------------------------------------------------------------------------------AVAA-GRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAA---AVLNG----------------------------------------------------------------------------GGKTTH-S-------AEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPRE-G----------------------------------SVQAVMLNSSGYPLRS---GEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSET------------------------------PNMYPPVQP---QPISSSHPYQ-HLAGWQMGRPPVLPGS----FLSGSYPPMML--PSTVVPMQGWN---------PY-----------ISPV----NQVASAGGHQTVQAGPFYGLSHQGPSAAVT--YGSQYAPLSSS-----TM----PSSSSKQEPAFPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKS---------NCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDH-----PM--GTLSYSPSASSITDLPIAPYPLNY--AVAPVAP-----PSSSSDLRPEYLLTKEFSANQSASP------GTTCGPAGAMLKASTYPLSISSLGPPLIVNKASTDFD------------KGMAK-------VVILPPE-   [451]
'gi|34906988|ref|NP 914841.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)]'                                 M--------------------------------------------------------------------------------DDAGRASAPAVVT-----------------------LPATAAATDEPSHDPAALYGE-------GMWQQMTM---------------------SGSG-----------------------------------------------------------------------------------------------------AMQP-GPYPERSGEPDCTYYLRTGLC---------------------------------------------------------------------------------------------------------RM-K-------GEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAG---------------------------------IAGRVQLNTLGYPLRP---SEKECAYYLKTGQCKYGNTCKFHHPELFNAMAS---------------------------SRGSPIYPSVHS----SATAGPPYTGTMASWAFPR-GSFIPS-PRWQNPSNYAPMIV--PQGLVQVPSWN---------SY-----------TGQMM---PVSSSESRLQSPGAQQTYGTSQQVDASAG---NQGMLSPYRSS------SYPV-PQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTP---------DCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM--GVYAYGSASTNVPMIVGIGFSG---------------SWQQGAKDPTDSSGAPPNTHVLGEDPIPYRKI---------------------------------------------------------------------   [420]
'gi|77550853|gb|ABA93650.1| Zinc finger C-x8-C-x5-C-x3-H type, putative [Oryza sativa (japonica cultivar-group)]'                    M----------------AAAPSAGGVGEGSSSSAAAAAAAAAATIGPHVVDEGALCFGHSHNADMFYNVDTLSVIDGMVVITTQNFELQYIKGLWRIWQATPLMGRISFGAAREGLSAAATAVAVAASVIGPHSSDEE-------AMW-QMNL-----------------------GE-----------------------------------------------------------------------------------------------------AMEA-GPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMA------------------------------------------------------------------------------------VAAARM-K-------GEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAA---------------------------------IATRVQLNALGYPLRP---NEKECAYYLRTGQCKFGSTW------------------------------------------------------------------AVTNWPLSRSASFIAS-PRWPGHSSYAQVIV--PPGLVQVPGWN---------PY-----------AAQI----GSSSSDDQQRTAGGAQYYTGSRHSETPNMG--DQGMFSSYQAG------SVPL-GLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTP---------NCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDH-----PM--GTVMYGLATSPTGDVSARRMLA---------------PVPAHSEVSPDNVSGRSRRITHSDSQ------QIPSGERGTEREAS-------------------------------------------------------   [494]
'gi|56783964|dbj|BAD81401.1| putative floral homeotic protein HUA1 [Oryza sativa (japonica cultivar-group)] >gi|62901411|sp|Q5NA'    MEQPHAAAAAAGG------------GEGEGGASPDTGLEG---------------------------------------------------------------------------------------------------------PMW-RMGLGGGG-----------GGGGGGGGGD-----------------------------------------------------------------------------------------------------GDAA-GRLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGT---E-FGG----------------------------------------------------------------------------GARNAA-A-------LDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDG----------------------------------AVLPVMLNNSGFPIRL---GEKECSYYMKTGQCKFGTTCKFHHPEFGGVPMT------------------------------PGIYPPLQS---PSIASPHPYA-SLANWQMGRPPVVPGS----YIPGSYTPMML--SSGMIPLQGWS---------PY-----------PASV----NPVVSGGAQQNVQAGPVYGMGHHGSSSTIA--YGGPYVPYASS-----TG----QSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKS---------GYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDH-----PM--GTLGYSPSALPLSDMPIAPYPIGF--SIATLAP-----SSPSPDLRPEYISTKDQSVNQVTSP------VAASEPVGSILPKGVFP--------ADTMMRAQTNTT------------SGG---------SSSPGGGR   [476]
'gi|56783965|dbj|BAD81402.1| putative floral homeotic protein HUA1 [Oryza sativa (japonica cultivar-group)]'                         --------------------------------------------------------------------------------------------------------------------------------------------------MW-RMGLGGGG-----------GGGGGGGGGD-----------------------------------------------------------------------------------------------------GDAA-GRLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGT---E-FGG----------------------------------------------------------------------------GARNAA-A-------LDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDG----------------------------------AVLPVMLNNSGFPIRL---GEKECSYYMKTGQCKFGTTCKFHHPEFGGVPMT------------------------------PGIYPPLQS---PSIASPHPYA-SLANWQMGRPPVVPGS----YIPGSYTPMML--SSGMIPLQGWS---------PY-----------PASV----NPVVSGGAQQNVQAGPVYGMGHHGSSSTIA--YGGPYVPYASS-----TG----QSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKS---------GYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDH-----PM--GTLGYSPSALPLSDMPIAPYPIGF--SIATLAP-----SSPSPDLRPEYISTKDQSVNQVTSP------VAASEPVGSILPKGVFP--------ADTMMRAQTNTT------------SGG---------SSSPGGGR   [447]
'gi|79516213|ref|NP 197356.2| nucleic acid binding [Arabidopsis thaliana] >gi|38603838|gb|AAR24664.1| At5g18550 [Arabidopsis tha'    MERYG-----------------------------------------------------------------------------------------------------------GAGEDESRSDPSHEWSAQGTETGIEA-------SMW-RLGL-------------------R---GG-----------------------------------------------------------------------------------------------------GGGG-ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPV------------------------------------------------------------------------------------LGGLRTEA-------GEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGD-------------------------------SVTPVSLNYMGFPLRP---GEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQ-QQQQLS---------------AGP---TMYPSLQS---QTVPSSQQYGVVLAR------PQLLPG-SYVQSPYGYGQMVL--PPGMVPYSGWN---------PY-----------QASV----SAMPSPGTQPSMGTSSVYGITPLSPSAPA----YQSGPS---------------STGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEA---------S-TLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH-----SLGSSSLSYSPSPSSLTDMPVAPYPSSL--GTLAPSS-----SSDQCTELISSSSIEPITT---TTG------GSETVAAGVSSMTSDVSHP--EPAETNKGDSASN-----------------------------EAKTSS   [465]
'gi|57900443|dbj|BAD87736.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)]'                                  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-K-------GEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAG---------------------------------IAGRVQLNTLGYPLRP---SEKECAYYLKTGQCKYGNTCKFHHPELFNAMAS---------------------------SRGSPIYPSVHS----SATAGPPYTGTMASWAFPR-GSFIPS-PRWQNPSNYAPMIV--PQGLVQVPSWN---------SY-----------TGQMM---PVSSSESRLQSPGAQQTYGTSQQVDASAG---NQGMLSPYRSS------SYPV-PQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTP---------DCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM--GVYAYGSASTNVPMV----------------------------RRLLQSPSASAYTS---------------------------------------------------------------------------------   [322]
'gi|79395677|ref|NP 187292.2| nucleic acid binding [Arabidopsis thaliana]'                                    MERYG-----------------------------------------------------------------------------------------------------------RPGEEGSRSDPSLEWTSHGGETAVEA-------PMW-RLGL-------------------SGGGGG-----------------------------------------------------------------------------------------------------GGGG-ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAV------------------------------------------------------------------------------------IGGVRGEA-------GALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGG-------------------------------SVAPVSLSYLGYPLRP---GEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQ---------------PQPQLQTIYPTLQS---QSIPSSQQYGLVLTR------PSFLTG-SYLQSPYG-PPMVL--PPGMVPYSGWN---------PY-----------QASL----SAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPS---------------SNSTS---KEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKT---------GIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH-----SM-SSSLSYSPSASSLTDMPVAPYPIGS--SSLSGSS-----AP-------VSSSNEPT---------------KEAVTPAVSSMVSGLSRP--EPAETS-GDSASVSGS-------------------------IEAKTSS   [462]
'gi|6437560|gb|AAF08587.1| hypothetical protein [Arabidopsis thaliana] >gi|62901473|sp|Q9SQU4|ZFNL2 ARATH Zinc finger CCCH type'     MRVF------------------------------------------------------------------------------------------------------------------------------------VA-------PMW-RLGL-------------------SGGGGG-----------------------------------------------------------------------------------------------------GGGG-ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAV------------------------------------------------------------------------------------IGGVRGEA-------GALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGG-------------------------------SVAPVSLSYLGYPLRP---GEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQ---------------PQPQLQTIYPTLQS---QSIPSSQQYGLVLTR------PSFLTG-SYLQSPYG-PPMVL--PPGMVPYSGWN---------PY-----------QASL----SAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPS---------------SNSTS---KEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKT---------GIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH-----SM-SSSLSYSPSASSLTDMPVAPYPIGS--SSLSGSS-----AP-------VSSSNEPT---------------KEAVTPAVSSMVSGLSRP--EPAETS-GDSASVSGS-------------------------IEAKTSS   [437]
'gi|15242694|ref|NP 201131.1| nucleic acid binding [Arabidopsis thaliana] >gi|10177307|dbj|BAB10568.1| unnamed protein product ['    MSKPEETSD---P------------NPTGPDPSRSSSDEVTVTVADRAPSDLNHVSEELSDQLRNVGLDDSAKELSVP-ISVPQGNVETDSRALFGSDQKEEEEG-----------------------------------------------------------------------SE-----------------------------------------------------------------------------------------------------KRMM-MVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQ-----IGR----------------------------------------------------------------------------E-RVRE-R-------DEDVENPKLMECKYYFRTGGCKYGESCRFSHMKEHNS---------------------------------PASVPELNFLGLPIRP---GEKECPFYMRNGSCKFGSDCKFNHPDPTA-----------------------------IGGVDSPLYRGNNG---GSFSPKAPSQASSTSWSSTRHMNGTGT-------APFIPSMF--PHSRGVTPQAS---------DW-----------NGYQ----ASSAYPPERSPLAPS-SYQVNNSLAETSS-FSQY----------------------QHQMSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQA---------AFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH-----SI------------------PPTFSPSS--SQT-VEA-----RQVG-ANGNEDDSWH-------------------------------------------------------------------------------------   [435]
'gi|56790210|gb|AAW30022.1| At5g63260 [Arabidopsis thaliana] >gi|55819798|gb|AAV66094.1| At5g63260 [Arabidopsis thaliana]'           MSKPEETSD---P------------NPTGPDPSRSSSDEVTVTVADRAPSDLNHVSEELSDQLRNVGLDDSAKELSVP-ISVPQGNVETDSRALFGSDQKEEEEG-----------------------------------------------------------------------SE-----------------------------------------------------------------------------------------------------KRMM-MVYPVKPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQ-----IGR----------------------------------------------------------------------------E-RVRE-R-------DEDVENPKLMECKYYFRTGGCKYGESCRFSHMKEHNS---------------------------------PASVPELNFLGLPIRP---GEKECPFYMRNGSCKFGSDCKFNHPDPTA-----------------------------IGGVDSPLYRGNNG---GSFSPKAPSQASSTSWSSTRHMNGTGT-------APFIPSMF--PHSRGVTPQAS---------DW-----------NGYQ----ASSAYPPERSPLAPS-SYQVNNSLAETSS-FSQY----------------------QHQMSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQA---------AFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH-----SI------------------PPTFSPSS--SQT-VEA-----RQVG-ANGNEDDSWH-------------------------------------------------------------------------------------   [435]
'gi|18403134|ref|NP 565758.1| ZFN2 (ZINC FINGER PROTEIN 2); nucleic acid binding [Arabidopsis thaliana] >gi|2702272|gb|AAB91975.'    ----MSETQQQVQ------------NSTGSIRSPDKIEDTFRRMKVNED--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMEQSSPYPDRPGERDCQFFLRTGQCGYGNSCRYNHPLTNLP-------------------------------------------------------------------------------------QGIIYY-R-------DQLPERVGQPDCE----TGACKYGPTCKYHHPKDRNG----------------------------------AGPVLFNVLGLPMRQ---GEKPCPYYMQTGLCRFGVACKFHHPHPHSQPSNGHS-AYAMS---------------------------------SFPSVGFPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWA---------TY---------------------------------------------------MTASNPIYNMKTQ---LDSSSSASVAVTVTSHHHSFSERAECRFFMNTGTCKYGDDCKYSHPKERLLQSP---------PTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDH-----SM--LLNPYNNTGLAM-SSLPTPYPYAPPVSTNLRISSPPSPSDMTTLSNGKPAAAEAQSLETEKQD------DSPTEPEKSEVEDSLPPNGSDSTSLPNDKPDAETEKQ------------DDDSAELDSSKVQDSSDKST   [453]
'gi|42573387|ref|NP 974790.1| ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding [Arabidopsis thaliana] >gi|21536865|gb|AAM61197'    --------------------------------------------------------------------------------------------------------------------------------------------------MW-QMNL---------------------GSDD-----------------------------------------------------------------------------------------------------TMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLV------------------------------------------------------------------------------------IATARI-K-------GEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAG---------------------------------IDGSVSVNVLSYPLRP---NEDDCSYFLRIGQCKFGGTCKFNHPQTQSTNLM-------------------------VSVRGSPVYSALQS-----LTGQPSY-------SWSR-TSFVANPPRLQDPSGFASG----SQGGL-----------------------------------------------------------------------FSSGFHSG-----NSVPL-GFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPP---------DCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDH-----PM--RVFTYNNNTASPSPSSSLHQET---------------AITTELRNLLVSSSVEAKPTSLPETT------------SAKDTIVDAQH----------------------------------------------------   [354]
'gi|30685903|ref|NP 851041.1| ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding [Arabidopsis thaliana] >gi|62901381|sp|Q8L7N8|Z'    M----------------------------------------------------------------------------------------------------------------------DFDSISRESTFLSPLLNQN-------AMW-QMNL---------------------GSDD-----------------------------------------------------------------------------------------------------TMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLV------------------------------------------------------------------------------------IATARI-K-------GEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAG---------------------------------IDGSVSVNVLSYPLRP---NEDDCSYFLRIGQCKFGGTCKFNHPQTQSTNLM-------------------------VSVRGSPVYSALQS-----LTGQPSY-------SWSR-TSFVANPPRLQDPSGFASG----SQGGL-----------------------------------------------------------------------FSSGFHSG-----NSVPL-GFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPP---------DCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDH-----PM--RVFTYNNNTASPSPSSSLHQET---------------AITTELRNLLVSSSVEAKPTSLPETT------------SAKDTIVDAQH----------------------------------------------------   [375]
lcl|Ppa_HUA1_7_1_unnamed_protein_product                                    M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RIDAWKRSKLTMCVVLQG------------------------------------------------------------------------------------------------AVVARG-K-------GEYPERVGQPEC----QTGTCKFGATCKYHHPREKAG---------------------------------STGRVLLNVLGLPLRL---GEKECAYYMRTGSCKYGVTCKFHHPQPATGYAA----------------------------------------------------GALPSWPLARSPYPL---PRLQTHSSYGPM-LPLQQGIMSMPGWSYQGPVGPPDSHQQGYVFGGAPQGEHV----SGYGPYVQGSSAVGLLAHQAT---------------------------------QSVGPQKESLFPERPGQPECQYYMKTGDCKFGTTCRYHHPKDRTTPSP---------TCHLSPIGLPLRPGNLPCSFYTRYGICKFGPTCKFDH-----PL-VGSFPYSMSAGSLADGPVATYPIGS--SPMNLAP-----SAYS-EGLLEQQGS?-------------------------------------------------------------------------------------   [329]
gi|7211990|gb|AAF40461.1|_Contains_similarity_to_zinc_finger_protein_from_Arabidopsis_thaliana_gb|AC018363.__EST_gb|AA713271_co      ----MSDT-QHVQ------------SSLVSIRSSDKIEDAFRKMKVNET--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHP-THLP-------------------------------------------------------------------------------------QDVAYY-K-------EELPERIGQPDCE----TGACKYGPTCKYHHPKDRNG----------------------------------AQPVMFNVIGLPMRL---GEKPCPYYLRTGTCRFGVACKFHHP----QPDNGHSTAYGMS---------------------------------SFPAADLRYASGLTMMS----TYGTLPRPQVPQS--YVPILVSPSQGFLPPQGWA---------PY---------------------------------------------------MAASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPP---------PSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDH-----PM--LPYP----GLTMATSLPT--PFASPVTTHQRISPTPNRSDSKSLSNGKPDVKKESS-ETEK-------------PDNGEVQD------------------------------------------------LSEDASSP   [396]
'gi|42571337|ref|NP 973759.1| nucleic acid binding [Arabidopsis thaliana] >gi|18390466|ref|NP 563725.1| nucleic acid binding [Ar'    MRTPMSDT-QHVQ------------SSLVSIRSSDKIEDAFRKMKVNET--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHP-THLP-------------------------------------------------------------------------------------QDVAYY-K-------EELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNG----------------------------------AQPVMFNVIGLPMRL---GEKPCPYYLRTGTCRFGVACKFHHP----QPDNGHSTAYGMS---------------------------------SFPAADLRYASGLTMMS----TYGTLPRPQVPQS--YVPILVSPSQGFLPPQGWA---------PY---------------------------------------------------MAASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPP---------PSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDH-----PM--LPYP----GLTMATSLPT--PFASPVTTHQRISPTPNRSDSKSLSNGKPDVKKESS-ETEK-------------PDNGEVQD------------------------------------------------LSEDASSP   [404]
'gi|15228379|ref|NP 190414.1| nucleic acid binding [Arabidopsis thaliana] >gi|4678344|emb|CAB41154.1| putative protein [Arabidop'    MVNSEEIADGFEP------------KPVSRSYSGDSS-------HDRSLSDLNHAAEDLSDKLKNVGLNEVTKEQSEKMMSVSESNGGLDSNAVVTINQEEEEEEEDRDGY--------------------------------------GYGD-------------------GW--SE-----------------------------------------------------------------------------------------------------NESE-NVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQ-----IAR----------------------------------------------------------------------------DNKVRE-K-------EDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTIPKSG---------------------------------LASAPELNFLGLPLRP---GEVECPYYMRNGSCKYGAECKFNHPDPTT-----------------------------IGGTDSPSFRGNNGVSIGTFSPKATFQASSTSWSSPRHVN--GT-------SPFIPVML--SQTHGVTSQNP---------EW-----------NGYQ----A-SVYSSERGVFSPSTTYLMNNSSAETSMLLSQY----------------------RHQMPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLP---------PYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH-----SV------------------QPPYSTES--SQAIVEP-----PQVS-ANGNESDGWN-------------------------------------------------------------------------------------   [448]
'gi|77554315|gb|ABA97111.1| hypothetical protein LOC Os12g18120 [Oryza sativa (japonica cultivar-group)]'                            MADADARAPPKSD------------PGATPIGSISPSSAA---------------------------------------------------------------------PAAGEDEVEVEVEVEEQLAGLAIADQGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAVGVEGA-----------------------------------------------------------------------------------------------------AADSRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNKASSPDDE-QAPKEEYGSYVPDISPEVDSL--------------------IIDVKKGRVEPKELKVAKEKR-K-------EFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKT-------------------------------DAEKVDLNFLGLPLRP---GEKECPYYMRTGSCKYATNCKFHHPDPSNVASK------------------------------DPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLP--PQGMYPPPEWN---------GY-------------HQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEI---------------------------PGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAG-----------ALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNH-----PF-----NFSPVPAAGPPLLPAQYPTPGNYTL--------------------------------------------------------------------------------------------------------------   [508]
'gi|34902952|ref|NP 912823.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)]'                                 MEQPHAAAAAAGG------------GEGEGGASPDTGLEG---------------------------------------------------------------------------------------------------------PMW-RMGLGGGG-----------GGGGGGGGGD-----------------------------------------------------------------------------------------------------GDAA-GRLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGT---------------------------------------------------------------------------------------------------------------EYYMKTGTCKFGTNCKYHHPKQDG----------------------------------AVLPVMLNNSGFPIRL------------------------------------------------------------------------------------------------------------------------------------------------------------ASV----NPVVSGGAQQNVQAGPVYGMGHHGSSSTIA--YGGPYVPYASS-----TG----QSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKS---------GYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDH-----PM--GTLGYSPSALPLSDMPIAPYPIGF--SIATLAP-----SSPSPDLRPEYISTKDQSVNQVTSP------VAASEPVGSILPKGVFP--------ADTMMRAQTNTT------------SGG---------SSSPGGGR   [360]
'gi|77554313|gb|ABA97109.1| hypothetical protein LOC Os12g18120 [Oryza sativa (japonica cultivar-group)]'                            MADADARAPPKSD------------PGATPIGSISPSSAA---------------------------------------------------------------------PAAGEDEVEVEVEVEEQLAGLAIADQGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAVGVEGA-----------------------------------------------------------------------------------------------------AADSRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNKASSPDDEQQAPKEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELKVAKEKR-K-------EFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKT-------------------------------DAEKVDLNFLGLPLRP---GEKECPYYMRTGSCKYATNCKFHHPDPSNVASK------------------------------DPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLP--PQGMYPPPEWN---------GY-------------HQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEI---------------------------PGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAG-----------ALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNH-----PF-----NFSPVPAAGPPLLPAQYPTPGNYTL--------------------------------------------------------------------------------------------------------------   [529]
'gi|77554314|gb|ABA97110.1| hypothetical protein LOC Os12g18120 [Oryza sativa (japonica cultivar-group)]'                            MADADARAPPKSD------------PGATPIGSISPSSAA---------------------------------------------------------------------PAAGEDEVEVEVEVEEQLAGLAIADQGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAVGVEGA-----------------------------------------------------------------------------------------------------AADSRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNKASSPDDE-QAPKEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELKVAKEKR-K-------EFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKT-------------------------------DAEKVDLNFLGLPLRP---GEKECPYYMRTGSCKYATNCKFHHPDPSNVASK------------------------------DPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLP--PQGMYPPPEWN---------GY-------------HQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEI---------------------------PGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAG-----------ALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNH-----PF-----NFSPVPAAGPPLLPAQYPTPGNYTL--------------------------------------------------------------------------------------------------------------   [528]
lcl|Ppa_HUA1_10_1_unnamed_protein_product                                    MAMQGQE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GV-----------------------------------------------------------------------------------------------------DGGQ-GPYPERPGEPDCVYYMRTGLCGFGMTCRYNHPPNRKLA------------------------------------------------------------------------------------AAATRG-K-------GEYPERVGHPECQ----TGTCKFGATCKYHHPREKAG---------------------------------STGRVHLNVLGLPLRL---GEKECAYYMRTGSCKYGVTCKFHHPQPATNASA----------FELRHNDAVAARNHVDGGVELPSGGGERE------AVRGRAWCGESESEEEIQKNGGGG-------SKGSGACD--AMSVGGVKVNE---------QN-----------GGDQ----SGRRKGTSRGTSSEERRRESTCRVTVLTCKGHQQW--------------DFPL-IRRRRRWETVFPERPGQPECQYYMKTGDCKFGSTCRYHHPKDRATPSP---------TCHLSPMGLPLRPGNPPCSFYSRYGICKFGPTCKFDH-----PL-GGSLTYSPSAGSLTDLPVAPYPVGS--SPMNLAP-----SGYS-EVPVERQDAVEGGGYGEDGS------SGGHHRVGRGN------SEA--------ATASPPTVG------------EGGAR-------DVKVVCKK   [436]
lcl|Ppa_HUA1_1_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCKFGATCKYHRSAGEGG---------------------------------VNRASAFERAGASAETGICG--GSAAFVATGKISVSAT--------------------------------------------------------------------------------------------KAADTFELRSNAATAARDHVDARVELPNGHQQGYVFGGAPQGEHV----SGFGPYMQGSSAAT----------------------------------------QSVVGQKESLFPERLGQPECQYYMKTGECKFGTTCRYHHPKDRSTPSS---------TCHLSAMGLPLRPGNPPCSFYTRYGICKFGPTCKFDH-----PL-VGSLTYSPSAGSLADVPVAPYPIGS--SPMNLAP-----SAYS-EGLLERQGS?-------------------------------------------------------------------------------------   [248]
'gi|47499870|gb|AAT28673.1| zinc finger protein [Oryza sativa (japonica cultivar-group)] >gi|47559177|gb|AAT35591.1| zinc-finger'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGHHGSSSTIA--YGGPYVPYASS-----TG----QSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKS---------GYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDH-----PM--GTLGYSPSALPLSDMPIAPYPIGF--SIATLAP-----SSPSPDLRPEYISTKDQSVNQVTSP------VAASEPVGSILPKGVFP--------ADTMMRAQTNTT------------SGG---------SSSPGGGR   [207]
'gi|42571795|ref|NP 973988.1| nucleic acid binding [Arabidopsis thaliana]'                                    M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEP---------QCTLNDKGLPLRPGQAICPHYSRFGICRSGPTCKFDHFT-------------------------------------------------------------------------------------------------------------------------------------------------   [82]
lcl|1640_Cre_unnamed_protein_product                                    E-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FPRRPGKQLCDFYVKTGHCKFADTCVFDHPVEH--------------AVRLTALGLPLRPAEPVCTFYLKNNECGFGPACKFNH---------------------------------------------------------------------------------------------------------------------------------------------------   [71]
;
END;


BEGIN CODONS;
	CODESET  * UNTITLED = Universal: all ;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
	EXSET * UNTITLED  =  1-734 768-783 819-965;
END;


BEGIN MacClade;
	Version 4.0  87;
	LastModified -1021315839;
	FileSettings editor  '0' '0' '1' '1';
	Singles 100;
	Editor 00011001111111100100010010 '1' '8' Geneva '8' '490' '1' all;
	EditorPosition  '44' '6' '1083' '1373';
	TreeWindowPosition  '46' '6' '1135' '1550';
	ListWindow Characters open Geneva '9' '50' '25' '273' '366' 000;
	ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000;
	ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ;
	ChartWindowPosition  '52' '30' '818' '1380';
	StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220';
	WindowOrder  Data List Characters;
	OtherSymbols &/ 00 ?-;
	Correlation  '0' '0' '1000' '0' '0' 10011010;
	Salmo 00000001;
	EditorFile  '4';
	ExportHTML _ MOSS  '100' 110000;
	PrettyPrint 10;
	EditorToolsPosition  '971' '42' '115' '165';
	TreeWindowProgram 10;
	TreeWindow 0000;
	Continuous  '0' '3' 1;
	Calculations 0000001;
	SummaryMode  '0' '0' 0;
	Charts  Geneva '9' (normal) 0010;
	NexusOptions  '0' '0' '50' 001011001;
	TipLabel  '1';
	TreeFont  Geneva '9' (normal);
	TreeShape  1.0 1.0 0100;
	TraceLabels 0101;
	ChartColors  '0' '0' '65535' '9' '0' 1;
	ChartBiggestSpot 1;
	ChartPercent 10;
	ChartBarWidth  '10' 1;
	ChartVerticalAxis 10101;
	ChartMinMax  '0';
	TraceAllChangesDisplay  '1' 1;
	BarsOnBranchesDisplay  '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101;
	ContinuousBranchLabels 0;
	AllStatesBranchLabels 1;
	IndexNotation  '2' 1;
	PrintTree  10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '32767' '-1' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000;
	MatchChar 00 .;
	EntryInterpretation 01;
	ColorOptions 00;
	TreeTools  '0' '5' '4' '0' '10' '4' '0' 00100111111101110;
	EditorTools  '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011;
	PairAlign  '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010;
	BothTools  '1';
END;