#NEXUS 
[MacClade 4.08 registered to Tsuyoshi Aoyama, NIBB]


BEGIN DATA;
	DIMENSIONS  NTAX=81 NCHAR=1490;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|18398572|ref|NP 565429.1| WUS (WUSCHEL); DNA binding / transcription factor [Arabidopsis thaliana] >gi|20197596|gb|AAD20131.'    -------------MEP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PQHQHHHHQADQESGNNNNNKS-------------------GSGGYTCRQTSTRWTPTTEQIKILKELYYNNAI-RSPTADQIQKITARLRQ-FG-KIEGKNVFYWFQNHKARERQKKRFNGTNMTTPSSSPNSVMMAANDHY------------------------------------HPLLHHHHGVPMQRPANSVN--------------VKLNQDHHLYHHNKPYPSFNNGNLNHASSG------T-ECGVVNASNGYMSSHVYGS----MEQDCSMN----------------------------------------------------------------------------------------------------YNNVGGGWANMDHHYSSAPYNFFDRAK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLFGLEGHQEEEECGGDAYLEHRRTLPLFPMHGEDHINGGSGAIWKYGQSEVRPCASLELRLN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [292]
'gi|4090200|emb|CAA09986.1| WUSCHEL protein [Arabidopsis thaliana]'                                    -------------MEP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PQHQHHHHQADQESG-NNNNKS-------------------GSGGYTCRQTSTRWTPTTEQIKILKELYYNNAI-RSPTADQIQKITARLRQ-FG-KIEGKNVFYWFQNHKARERQKKRFNGTNMTTPSSSPNSVMMAANDHY------------------------------------HPLLHHHHGVPMQRPANSVN--------------VKLNQDHHLYHHNKPYPSFNNGNLNHASSG------T-ECGVVNASNGYMSSHVYGS----MEQDCSMN----------------------------------------------------------------------------------------------------YNNVGGGWANMDHHYSSAPYNFFDRAK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLFGLEGHQDEEECGGDAYLEHRRTLPLFPMHGEDHINGGSGAIWKYGQSEVRPCASLELRLN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [291]
'gi|37604222|gb|AAO23113.1| ROSULATA [Antirrhinum majus] >gi|61216997|sp|Q6YBV1|WUS ANTMA Protein WUSCHEL (Protein ROSULATA)'        -------------MEP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QQQQQQQGNEQQDSQGIGKINNGS-------------------GGSSFLCRQSSTRWTPTTDQIRILKDLYYNNGV-RSPTAEQIQRISAKLRQ-YG-KIEGKNVFYWFQNHKARERQKKRFTADHHHHMNVPTIH----------------------------------------------------------------------------------------NHHYKPPPVYNKFSNMNSGSFPSSSN-G-SPGFLTTPGSHVGNYGYGS----VAMEKSFRECTISSTTDANVGG--------------------------------------------------------------------------------------SMSQNIAWIGINNEYHNPYTFIDTRK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YMNGYDQTLEIEEEAEENYTAEIETLPLFPMHADIKQDTADYFNGRLENGCPRASLELTLNSWFGNSKYN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [281]
'gi|22087128|gb|AAM90847.1| wuschel protein [Petunia x hybrida] >gi|61217028|sp|Q8LL11|WUS PETHY Protein WUSCHEL (PhWUS) (Protei'    -------------MET--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AQH--QQNNQQHYLHQHLSIGQGTNIEDGSNKN-------------------NSSNFMCRQNSTRWTPTTDQIRILKDLYYNNGV-RSPTAEQIQRISAKLRQ-YG-KIEGKNVFYWFQNHKARERQKKRLIAAATTDNTNLPMQMQFQRGVWRS-----SADDPI--------------------------------------------------------------------HHKY----TNPGVHCPSASS-----------HGVLAVGQNGNHGYGA----LAMEKSFRDCSISPGSSMSH----------------------------------------------------------------------------------------HHHQNFAWAGVDPY-----SSTTTYPFLEKT--KHFENETL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EADEEQQEEDQENYYYQRTTSAIETLPLFPMHEENISSFCNLKHQESSGGFYTEWYRADDNLAAARASLELSLNSFIGNSS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [307]
'gi|28070968|emb|CAD61961.1| wuschel protein [Lycopersicon esculentum] >gi|61217026|sp|Q84VT7|WUS LYCES Protein WUSCHEL (LeWUS)'     -------------ME-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HQH-------NIEDGG-KN-------------------SNNSFLCRQSSSRWTPTSDQIRILKDLYYNNGV-RSPTAEQIQRISAKLRQ-YG-KIEGKNVFYWFQNHKARERQKKRLIAAASATDNNNISSMQMIPHLWRS-----PDD-----------------------------------------------------------------------HHKYNTATTNPGVQCPSPSS-----------HGVLPVVQTGNYGYGT----LAMEKSFRECSISPPGG-------------------------------------------------------------------------------------------SYHQNLTWVGVDPYNNMSTTSPATYPFLEKSNNKHYE-ETL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DEEQEEEN-----YQRGNSALETLSLFPMHEENIISNFCIKHHESSGG----WYHSDNNNLAA---LELTLNSF----P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [272]
'gi|81686885|dbj|BAE48303.1| OsWUS protein [Oryza sativa (japonica cultivar-group)]'                                    -------------MDH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQQQRQQVGGGGGEEVAG-------------------RGGVPVCRPSGTRWTPTTEQIKILRELYYSCGI-RSPNSEQIQRIAAMLRQ-YG-RIEGKNVFYWFQNHKARERQKKRLTTLDVTTTTAAAADADASHLAVLS-----LSPTAAGATAPSFPGFYVG-----------------------------------------------------------------------------------NGGAVQTDQANVVNWDCTA----MAAEKTFLQDYMGVSGGGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAPTPWAMTTTTREPETLPLFPVGGGGGDGAHRHAGHGGFPSNFQRWGSAAATTNTITVQQHLQQHNFYSSSSSQLHSQDGPAAGTSLELTLSSYYCSCSPYPAGSM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [289]
'gi|50929413|ref|XP 474234.1| OSJNBa0084K01.18 [Oryza sativa (japonica cultivar-group)] >gi|38346078|emb|CAE04846.2| OSJNBa0084K'    -------------MDH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQQQRQQVGGGGGEEVAG-------------------RGGVPVCRPSGTRWTPTTEQIKILRELYYSCGI-RSPNSEQIQRIAAMLRQ-YG-RIEGKNVFYWFQNHKARERQKKRLTTLDVTTTTAAAADADASHLAVLS-----LSPTAAGATAPSFPGFYVG-----------------------------------------------------------------------------------NGGAVQTDQANVVNWDCTA----MAAEKTFLQDYMGVSGVGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAPTPWAMTTTTREPETLPLFPVVFVGGDGAHRHAVHGGFPSNFQRWGSAAATSYTITVQQHLQQHNFYSSSSSQLHSQDGPAAGTSLELTLSSYYCSCSPYPAGSM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [289]
'gi|9294502|dbj|BAB02721.1| homeodomain transcription factor-like protein [Arabidopsis thaliana] >gi|61217290|sp|Q6X7K0|WOX1 ARA'    -------------MWT------------------------------------------------------------------------------------------------------------------------MG--------------------YNEGGADSFNGG--------------------------RKLRPLIPRLTSCPTAAVNTNSD--HRFNMAVVTMTAEQN-----KRELMMLN-------------------SEPQHPPVMVSSRWNPTPDQLRVLEEL-YRQGT-RTPSADHIQQITAQLRR-YG-KIEGKNVFYWFQNHKARERQKRRRQMETGH---EETVLSTASLVSNHG-----FDK---------------------------KDPPGYKVEQVKNWICSVGC--------------DTQPEKPSRDYHLEEPANIRVEHNARCGGD------E-RRSFLGINTTWQMM-------------------QLPPSFYSSS----------------------------------------------------------------------------------------HHHHQRNLILNSPTVSSNMSNSNNAVSASKDTVTVSPVFL-RTREATNTETCHRN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GDDNKDQEQHEDCSNGELD-HQEQTLELFPLRKE--GFCSDGEKDKNISGIHCFYEFLPLKN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [350]
'gi|37909316|gb|AAP37133.1| WOX1 protein [Arabidopsis thaliana]'                                    -------------MWT------------------------------------------------------------------------------------------------------------------------MG--------------------YNEGGADSFNGG--------------------------RKLRPLIPRLTSCPTAAVNTNSD--HRFNMAVVTMTAEQN-----KRELMMLN-------------------SEPQHPPVMVSSRWNPTPDQLRVLEEL-YRQGT-RTPSADHIQQITAQLRR-YG-KIEGKNVFYWFQNHKARERQKRRRQMETGH---EETVLSTTSLVSNHG-----FDK---------------------------KDPPGYKVEQAKNWICSVGC--------------DTQPEKPSRDYHLEEPANIRVEHNARCGGD------E-RRSFLGINTTWQMM-------------------QLPPSFYSSS----------------------------------------------------------------------------------------HHHHQRNLIL-SPTVSSNMSNSNNAVSASKDTVTVSPVFL-RTREATNTETCHRN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GDDNKDQEQHEDCSNGELD-HQEQTLELFPLRKE--GFCSDGEKDKNISGIHCFYEFLPLKN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [349]
'gi|79406679|ref|NP 188428.2| transcription factor [Arabidopsis thaliana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAVVTMTAEQN-----KRELMMLN-------------------SEPQHPPVMVSSRWNPTPDQLRVLEEL-YRQGT-RTPSADHIQQITAQLRR-YG-KIEGKNVFYWFQNHKARERQKRRRQMETGH---EETVLSTASLVSNHG-----FDK---------------------------KDPPGYKVEQVKNWICSVGC--------------DTQPEKPSRDYHLEEPANIRVEHNARCGGD------E-RRSFLGINTTWQMM-------------------QLPPSFYSSS----------------------------------------------------------------------------------------HHHHQRNLILNSPTVSSNMSNSNNAVSASKDTVTVSPVFL-RTREATNTETCHRN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GDDNKDQEQHEDCSNGELD-HQEQTLELFPLRKE--GFCSDGEKDKNISGIHCFYEFLPLKN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [306]
'gi|34908148|ref|NP 915421.1| P0408C03.16 [Oryza sativa (japonica cultivar-group)] >gi|21104626|dbj|BAB93218.1| putative WOX2 pr'    -------------MET------------------------------------------------------------------------------------------------------------------------TT--------------------TTLGGGGGGRAGGFSDPPSPLSPPLSPASAA------------------------------------------------------------------------------------AAALANARWTPTKEQIAVLEGL-YRQGL-RTPTAEQIQQITARLRE-HG-HIEGKNVFYWFQNHKARQRQKQKQQSFDYF---SKLFRRPP-------------------------------------------PLPVLHRPLARPFPLAMAP--------------TAMPPPPPPPATTTTAACNAGGVMFRTPSF------M-PVATNNAS--YYPQ-------------------QQTPLLYP-----------------------------------------------------------------------------------------------------GMEVCPHDKSTAQPPATTTMYLQAPPSSA-HLAAAAGRGAAEAE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GHGRRGGGA-----------GGRETLQLFPLQPT--FVLPDHKPLRAGSACAAVSPTTPSASASFSWESESSDSPSSEAP----PFYDFFG---------VHS-GGR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [313]
'gi|37909278|gb|AAP37131.1| WOX2 protein [Arabidopsis thaliana]'                                    -------------MEN------------------------------------------------------------------------------------------------------------------------EV--------------------N------------------------------------------------------------------------------------------------------------------AGTASSSRWNPTKDQITLLENL-YKEGI-RTPSADQIQQITGRLRA-YG-HIEGKNVFYWFQNHKARQRQKQKQERMAYF---NRLLHKTSRFF---------------------------------------YPPPCSNVGCVSPYYLQQAS--------------DH--------HMNQHGSVYTNDLLHRNNVM------I-PSGG-----------------------------------YE-----------------------------------------------------------------------------------------------------KRTVTQHQKQLSDIRTTAATRMPISPSSL-RFDRFALRDHCYA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEDINVNS-----------SGRKTLPLFPLQ-----------PLNASNADGM-------GSSSFALGSDSPVDCSSDGAGREQPFIDFFSGGSTSTRFDSNG-NGL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [260]
'gi|79540980|ref|NP 200742.2| WOX2; transcription factor [Arabidopsis thaliana] >gi|37909289|gb|AAP37132.1| WOX2 protein [Arabid'    -------------MEN------------------------------------------------------------------------------------------------------------------------EV--------------------N------------------------------------------------------------------------------------------------------------------AGTASSSRWNPTKDQITLLENL-YKEGI-RTPSADQIQQITGRLRA-YG-HIEGKNVFYWFQNHKARQRQKQKQERMAYF---NRLLHKTSRFF---------------------------------------YPPPCSNVGCVSPYYLQQAS--------------DH--------HMNQHGSVYTNDLLHRNNVM------I-PSGG-----------------------------------YE-----------------------------------------------------------------------------------------------------KRTVTQHQKQLSDIRTTAATRMPISPSSL-RFDRFALRDNCYA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEDINVNS-----------SGRKTLPLFPLQ-----------PLNASNADGM-------GSSSFALGSDSPVDCSSDGAGREQPFIDFFSGGSTSTRFDSNG-NGL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [260]
'gi|39841617|gb|AAR31212.1| narrow sheath 2 [Zea mays] >gi|39841615|gb|AAR31211.1| narrow sheath 2 [Zea mays] >gi|61217577|sp|Q6'    -------------M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PQTPSTRWCPTPEQLMILEEM-YRSGV-RTPNAAEIQQITAHLAY-YG-RIEGKNVFYWFQNHKARERQRLRRRLCARHQQQYAQQQQQATAAAPAS-----SPN---------------------------SSATLLAPPAAGGSSAPCVH--------------PAVMQL---HHHHHPYAT------------------------------SFSMPHLGY----LGQQAATVTPVLNPAAAGMV----------------------------------------------------------------------------------------DLAG--AGAGNRATGAG-GAYGGGAGLYNSCSSNQLEVWD-ATEPMDHCNASCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASGSSDEGGAAHLQLPACCRRPLKTLDLFPTKST--GLK-DECSSSKSSSCSTSTN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [265]
'gi|81686872|dbj|BAE48302.1| OsWOX3 protein [Oryza sativa (japonica cultivar-group)] >gi|77548299|gb|ABA91096.1| narrow sheath 2'    -------------M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PQTPSTRWCPTPEQLMILEEM-YRSGV-RTPNAAEIQQITAHLAY-YG-RIEGKNVFYWFQNHKARERQRLRRRLCARHQQQPSP----------------------------------------------PSSTVPPAPTAAAAGAVVQVH--------------PAVMQLHHHHHHHHPYAA----------------------------AAAAQSHHLQQ----QQQQQAEWPAAVDYCS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TASASASATAADMAIPPCC-RPLKTLELFPTKSTSGGLKEDCCSSSKSSSCSTSTN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [203]
'gi|15226914|ref|NP 180429.1| PRS (PRESSED FLOWER); transcription factor [Arabidopsis thaliana] >gi|37954308|gb|AAP37135.1| PRS/'    -------------MSP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VASTRWCPTPEQLMILEEM-YRSGI-RTPNAVQIQQITAHLAF-YG-RIEGKNVFYWFQNHKARDRQKLRKKLAKQLHQQQHQLQLQLQQIK--------------------------------------PKPISSMISQPVNKNIIDHH--------------NPYHHHHHNHHHNHHRPYDHMSFDCCSHPSPMCLPHQ-GTGVGEAPSKVMNEYYCTK----SGAEEILMQKSITGPNSSYG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDWMMMMDMGPRPSYPSSSSSPISCCNMMMSSPKIPLKTLELFPISSINSKQDSTKL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [244]
'gi|46917143|emb|CAD60454.1| homeodomain transcription factor [Zea mays] >gi|61217580|sp|Q70UV1|WOX3A MAIZE WUSCHEL-related home'    -------------M--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PQTPSTRWCPTPEQLMILEEM-YRSGV-RTPNAAEIQQITAHLAY-YG-RIEGKNVFYWFQNHKARERQRLRRRLCARHQQQYA--QQQATAAAPAS-----SPN---------------------------SSATV--PSLAAGGSSAGVH--------------PAVMQL---HHHQHPYAT------------------------------NFMPHQLGY----MGQQVATVPPVLNPAAAGMV----------------------------------------------------------------------------------------DLAAARAGGGNKATAAGSGAYGGGAGLYNSCSSNQLEEWE-ATDAMEHCDASCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASGSSDEGGA--LQLPPCCRRPLKTLDLFPTKST--GLK-DECSSSKSSSCSTSTN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [262]
'gi|30693997|ref|NP 175145.2| transcription factor [Arabidopsis thaliana] >gi|37933928|gb|AAP37134.1| WOX4 protein [Arabidopsis'     -------------MKV-----------------------------------------------------------------------------------------------------------------------------------------------------HEFSNGFSSSWDQHDSTSSL-------SLSCKRLRPLAPKLSGSPPSPPSSSSG--VTSATFDLKNFIRPDQTGPTKFEHKRDP-------------------PHQLET-HPGGTRWNPTQEQIGILEML-YKGGM-RTPNAQQIEHITLQLGK-YG-KIEGKNVFYWFQNHKARERQKQKRNNLISL---SCQSSFTTTGV---------------------------------------FNPSVT--MKTRT---------------------------------------SSSLDIMREPMV------E-KEELVEEN--EYKR-------------------TCRSWGFE-----------------------------------------------------------------------------------------------------NLEIENRRNKNSSTMATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FNKI-----------IDNVTLELFPLHPE--GR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [251]
'gi|12321002|gb|AAG50620.1| hypothetical protein [Arabidopsis thaliana]'                                    -------------MKV-----------------------------------------------------------------------------------------------------------------------------------------------------HEFSNGFSSSWDQHDSTSSL-------SLSCKRLRPLAPKLSGSPPSPPSSSSG--VTSATFDLKNFIRPDQTGPTKFEHKRDP-------------------PHQ--T-HPGGTRWNPTQEQIGILEML-YKGGM-RTPNAQQIEHITLQLGK-YG-KIEGKNVFYWFQNHKARERQKQKRNNLISL---SCQSSFTTTGV---------------------------------------FNPSVT--MKTRT---------------------------------------SSSLDIMREPMV------E-KEELVEEN--EYKR-------------------TCRSWGFE-----------------------------------------------------------------------------------------------------NLEIENRRNKNSSTMATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FNKI-----------IDNVTLELFPLHPE--GR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [249]
'gi|30681653|ref|NP 187735.2| WOX5; transcription factor [Arabidopsis thaliana] >gi|37955172|gb|AAP37136.1| WOX5 protein [Arabid'    -------------MS-----------------------------------------------------------------------------------------------------------------------------------------------FSVKGRSLRGNNN--G---------------------------------------------------------------------------------------------------GTGTKCGRWNPTVEQLKILTDL-FRAGL-RTPTTDQIQKISTELSF-YG-KIESKNVFYWFQNHKARERQKRRKISIDFDHHHHQPS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRDVFEIS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEDCQEEE-----------KVIETLQLFPVNSF--EDSNSKVDKMRARGNNQYREYIRETTTTSFSPYSSCGAEMEHPPPLDLRLSFL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [182]
'gi|18379236|ref|NP 565263.1| PFS2 (PRETTY FEW SEEDS 2); transcription factor [Arabidopsis thaliana] >gi|40889020|gb|AAP37137.2|'    -------------MGY------------------------------------------------------------------------------------------------------------------------IS--------------------NN----------------------------------------------NLINYLPLSTTQP--PLLLTHCDINGNDHHQLITASSGEHDID-------------------ERKNNIPAAATLRWNPTPEQITTLEEL-YRSGT-RTPTTEQIQQIASKLRK-YG-RIEGKNVFYWFQNHKARERLKRRRREGGAIIKPHKDVKDSSSGGHRVD-----QTK---------------------------LCPSFPHTNRPQP-------------------------------QHELDPASYNKDNNANNEDH------G-----------------------------------------------------------------------------------------------------------------------------------------------TTEESDQRASEVGKYATWRNLVTWSIT-------QQPEEINIDE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NVNGEEEET-----------RDNRTLNLFPVREY--QEKTGRLIEKTKACNYCYYYEFMPLKN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [271]
'gi|55168346|gb|AAV44211.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]'                                    -------------MAP------------------------------------------------------------------------------------------------------------------------AV--------------------QQQQSGGGGGSTGA-----------------------------------------------------------------------------------------------------AAVGSTTRWCPTPEQLMMLEEM-YRGGL-RTPNAAQIQQITAHLST-YG-RIEGKNVFYWFQNHKARDRQKLRRRLCISH---HLLSCAHYYHHHLAA-----AAA---------------------------VVPPPQLLPPLHPSSSSSSC--------------GGGLIDHANSLLSPTSATTPTSAAAA------------------AAAAAYTTSYYYP----FTAAAAPPPPRTSPAASPLF----------------------------------------------------------------------------------------HYNQGGGGVVLPAAEAIGRSSSSSDYSLGKLVDNFGVALE-ETFPAQPQQPATTM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMTAVVDTTAVAAAAGGFC-RPLKTLDLFPGGLK--EEQHDVV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [286]
'gi|89330201|emb|CAJ84159.1| WOX2A protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LANARWNPTKEQVAVLEGL-YEHGL-RTPSAEQIQQITGRLRE-HG-AIEGKNVFYWFQNHKARQRQRQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|50929195|ref|XP 474125.1| OSJNBa0010D21.16 [Oryza sativa (japonica cultivar-group)] >gi|32488911|emb|CAE04492.1| OSJNBb0059K'    -------------MRL------------------------------------------------------------------------------------------------------------------------HH--------------------LHVAYLDHKASSSSSSPAPPSISPSSIPGSAAFPAFSFKCLRPLAPKISLPEPR-----------------KMIAPPDFVVPRARNASKLL-------------------NYTVQVPAAGTTRWNPSAEQIKVLEML-YRGGM-RTPNSVQIERITEELGK-YG-RIEGKNVFYWFQNHKARERQKQKRAALLTL---S---------T---------------------------------------LDPSLL--PATAN---------------------------------------ET-----KEAPE------K-KEKDVEDGLASCKR-------------------RCKAWG-----------------------------------------------------------------------------------------------------------DGAGDGDAVVATEA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGC-----------TDEVTLELFPLHPQ--GKA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [236]
'gi|12321880|gb|AAG50976.1| hypothetical protein; 64772-65429 [Arabidopsis thaliana]'                                    -------------MS-----------------------------------------------------------------------------------------------------------------------------------------------FSVKGRSLRGNNN--G---------------------------------------------------------------------------------------------------GTGTKCGRWNPTVEQLKILTDL-FRAGL-RTPTTDQIQKISTELSF-YG-KIESKNVFYWFQNHKARERQKRH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VFEIS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEDCQEEE-----------KVIETLQLFPVNSF--EDSNSKVDKMRARGNNQYREYIRETTTTSFSPYSSCGAEMEHPPPLDLRLSFL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [165]
'gi|46408855|emb|CAD88982.1| Homeobox protein HB3 [Oryza sativa (japonica cultivar-group)]'                                    -------------MRL------------------------------------------------------------------------------------------------------------------------HH--------------------LHVAYLDHKASSSSSSPAPPSISPSSIPGSAAFPAFSFKCLRPLAPKISLPEPR-----------------KMIAPPDFVVPRARNASKLL-------------------NYTVQVPAAGTTRWNPSAEQIKVLEML-YRGGM-RTPNSVQIERITEELGK-YG-RIEGKNVFYWFQNHKARERQKQKRAALLTL---R---------T---------------------------------------LDPSLLRRPLTKP---------------------------------------NR-----HRTTR------R-R---------TWKM-------------------DWRAAS-----------------------------------------------------------------------------------------------------------GGARRGLTAPAMETRWWRRRRRRL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HRRSVPGA-----------LPVASQIVGPVG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [238]
'gi|89330199|emb|CAJ84158.1| WOX5/7B protein [Populus trichocarpa]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TKCGRWNPTTEQVKLLTDL-FRSGL-RTPSTDEIQNISTQLSF-YG-KIESKNVFYWFQNHKARERQKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|89330205|emb|CAJ84161.1| WOX5A protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKCGRWNPTPEQVKVLTEL-FHAGL-RTPSADQIQRISAHLGA-FG-KVESKNVFYWFQNHKARERHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|50949065|ref|XP 493890.1| similar to a putative homeodomain transcription factor of Arabidopsis thialiana (AC007171) [Oryza'     -------------MAP------------------------------------------------------------------------------------------------------------------------AV--------------------QQQQSGGGGGSTGA-----------------------------------------------------------------------------------------------------AAVGSTTRWCPTPEQLMMLEEM-YRGGL-RTPNAAQIQQITAHLST-YG-RIEGKNVFYWFQNHKARDRQNAAAAS---------------------------------------------------------ASPTTSSPAPTTTTTTSPPP--------------PPSFRRRSFCRRCTPPPPPPPAAVASSTTL------I-PFSPPPAAAAAYTTSYYYP----FTAAAAPPPPRTSPAASPLF----------------------------------------------------------------------------------------HYNQGGGGVVLPAAEAIGRSSSSSDYSLGKLVDNFGVALE-ETFPAQPQQPATTM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMTAVVDTTAVAAAAGGFC-RPLKTLDLFPGGLK--EEQHDVV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [275]
'gi|15239229|ref|NP 196196.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|9759102|dbj|BAB09671.1| unnamed prot'    -------------MSS--------------------------------------------------------------------------------------------------------------------------------------------RGFNIKARGLCNNNNGGG---------------------------------------------------------------------------------------------------GTGAKCGRWNPTVEQVKLLTDL-FKAGL-RTPSTDQIQKISMELSF-YG-KIESKNVFYWFQNHKARERQKCRKISTVKFDHRQDTDLSKPR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDNVRRHQLPAKG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [122]
'gi|34908404|ref|NP 915549.1| P0529E05.28 [Oryza sativa (japonica cultivar-group)] >gi|56784417|dbj|BAD82456.1| putative homeodo'    -------------ME---------------------------------------------------------------------------------------------------------------------------------------------------------ALS--G---------------------------------------------------------------------------------------------------RVGVKCGRWNPTAEQVKVLTEL-FRAGL-RTPSTEQIQRISTHLSA-FG-KVESKNVFYWFQNHKARERHHHKKRRRGAS---SPDS--------------------------------------------------------------------------------------------------GSNDDDGRAAAH------E-GDADLVLQPPESKR-------------------EARSYGHH-----------------------------------------------------------------------------------------------------HRLMTCYVRDVVE-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAMWERPT-----------REVETLELFPLKSY--DLEVDKVRYVRGGGGEQCRE------------ISFFDVAAGRDPPLELRLCSFGL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [200]
'gi|89330197|emb|CAJ84157.1| WOX5/7A protein [Populus trichocarpa]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TKCGRWNPTIEQGKLLTDL-FRSGV-RTPSTDEIQNISTRLSF-YG-KIESKNVFYWFQNHKARERQKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|89330207|emb|CAJ84162.1| WOX5B protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKCGRWNPTAEQVKVLTEL-FRAGL-RTPSTEQIQRISTHLSA-FG-KVESKNVFYWFQNHKARERHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|89330203|emb|CAJ84160.1| WOX4 protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTRWNPSPDQIRVLEML-YRGGM-RTPNSFQIEQITEELGK-YG-RIEGKNVFYWFQNRKARERQKQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|89330211|emb|CAJ84164.1| WOX9B protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPKPRWNPRPEQIRILEAI-FNSGM-VNPPRDEIPRIRMRLQQ-YG-QVGDANVFYWFQNRKSRSKNKL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|79530393|ref|NP 199410.2| WOX8; DNA binding / transcription factor [Arabidopsis thaliana] >gi|37955180|gb|AAP37138.1| WOX8 p'    -------------MSS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SNKNWPSMFKSKPCNNNH------HHQHEIDTPSYM-----------------HYSNCNLSSSFSS-----------------------DRIPDPKPRWNPKPEQIRILESI-FNSGT-INPPREEIQRIRIRLQE-YG-QIGDANVFYWFQNRKSRAKHKLRVHHKSPKMSKKDKTVIP--------------------------------------------------------------------------------------------------STDADHCFG------F-VNQETGLYPVQNNELVVTE----PAG------------FLFPV----------------------------------------------------------------------------------------HNDPS------AAQSAFGFGDFV---VPVVTEEGMAFSTVNNGV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLETNENFDKIPAINLYG--------------------------------------------------------------------------------------------------------------------------------------------------------GDGNGGGNCFPPL--------------TVPLTINQSQEKRDVGLSGGEDVGDNVYPV--------------------------------------------------------------RMTVFINEMPIEVVSGL-FNVKAAFGNDAVLINSFG----QPILTDEFGVTYQPLQNGAIYYLI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [325]
'gi|9757718|dbj|BAB08243.1| unnamed protein product [Arabidopsis thaliana]'                                    -------------MSS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SNKNWPSMFKSKPCNNNH------HHQHEIDTPSYM-----------------HYSNCNLSSSFSS-----------------------DRIPDPKPRWNPKPEQIRILESI-FNSGT-INPPREEIQRIRIRLQE-YG-QIGDANVFYWFQNRKSRAKHKLRVHHKSPKMSKKDKTVIP--------------------------------------------------------------------------------------------------STDADHCFG------F-VNQETGLYPVQNNELVVTE----PAG------------FLFPV----------------------------------------------------------------------------------------HNDPS------AAQSAFGFGDFV---VPVVTEEGMAFSTVNNGV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLETNENFDKIPAINLYG--------------------------------------------------------------------------------------------------------------------------------------------------------GDGNGGGNCFPPL--------------TVPLTINQSQGKLIISK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [253]
'gi|34910936|ref|NP 916815.1| OSJNBb0063G05.13 [Oryza sativa (japonica cultivar-group)]'                                    -------------MAS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SNRHWPSMFRSKHATQ-PW-----QTQPDMAGSPPS------LLSGSSAGSAGGGGYSLKSSPFSS-------------------VGE-ERVPDPKPRWNPRPEQIRILEAI-FNSGM-VNPPRDEIPRIRMQLQE-YG-QVGDANVFYWFQNRKSRSKNKLRSGG-TGRAGLGLGGNRASAPAAA--------HREAVA----------------PSFTPPPPILPAPQPVQPQQQLVSPVA--------------APTSSSSSS---------SDRSSGSSKPAR------A-TSTQ-AMSVTTAMDLLSPL----AAACHQQMLYQGQPLESPPA----------------------------------------------------------------------------------------PAPKVHGIV--PHDEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAPNNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASI----------------------------------------------------------------------------------------------------------------------------------------------ATVSRPEEAHDVDA----------TK----------------------------------------------------------------------------------------------------------------------------------HGLLQYGFGITTPQVHV-DVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAVANNQFQGLADFGLVAGACSGAGAAAAAAAPEAG--------SSVAAVVCVSVAGA-APP-----------------------LFYPAA-HFNVRHYGDEAELLRYRGGSRTEPVPVDESGVTVEPLQQGAVYIVV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M   [533]
'gi|30685885|ref|NP 180944.2| WOX9 (STIMPY); transcription factor [Arabidopsis thaliana] >gi|37955182|gb|AAP37139.1| WOX9 protei'    -------------MAS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SNRHWPSMFKSKPHPH--------QWQHDINSPLLP-------------------SASHRSSPFSS-------------------GCEVERSPEPKPRWNPKPEQIRILEAI-FNSGM-VNPPREEIRRIRAQLQE-YG-QVGDANVFYWFQNRKSRSKHKLRLLHNHSKHSLPQTQPQP----------------------------------------------------QPQ-----PSA--------------SSSSSSSSS---------SSKSTKPRKSKN------K-NNTNLSLGGSQMMGMFPPE----PA-------------FLFPV----------------------------------------------------------------------------------------STVGGFEGITVSSQLGFLSGDMIEQQKPAPTCTGLLLSEIMNGSVSYGTHHQQH-----------------------------------------LSEKEVEEMRM----------------------------------------------------------------------------------------------------------------------------------------------KMLQQPQTQICYAT----------TN----------------------------------------------------------------------------------------------------------------------------------HQIASYNNN---------NNNNNIMLHIPPTTSTATTITTSHSLATVPSTSDQLQVQADA-----------------------------------------------------------------------------RIRVFINEMELEVSSGP-FNVRDAFGEEVVLINSAG----QPIVTDEYGVALHPLQHGASYYLI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [378]
'gi|2253582|gb|AAC69146.1| putative homeodomain transcription factor [Arabidopsis thaliana]'                                    -------------MAS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SNRHWPSMFKSKPHPH--------QWQHDINSPLLP-------------------SASHRSSPFSS-------------------GCEVERSPEPKPRWNPKPEQIRILEAI-FNSGM-VNPPREEIRRIRAQLQE-YG-QVGDANVFYWFQNRKSRSKHKLRLLHNHSKHSLPQTQPQP----------------------------------------------------QPQ-----PSA--------------SSSSSSSSS---------SSKSTKPRKSKN------K-NNTNLSLGGSQMMGMFPPE----PA-------------FLFPV----------------------------------------------------------------------------------------STVGGFEGITVSSQLGFLSGDMIEQQKPAPTCTGLLLSEIMNGSVSYGTHHQQH-----------------------------------------LSEKEVEEMRM----------------------------------------------------------------------------------------------------------------------------------------------KMLQQPQTQICYAT----------TN----------------------------------------------------------------------------------------------------------------------------------HQIASYNNN---------NNNNNIMLHIPPTTSTATTITTSHSLATVPSTSDQLQVQGNV-----------------------------------------------------------------------------NI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [321]
'gi|89330209|emb|CAJ84163.1| WOX9A protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPKPRWNPRPEQIRILEAI-FNSGM-VNPPRDEIPRIRMRLQE-YG-QVGDANVFYWFQNRKSRSKNKQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|50942791|ref|XP 480923.1| putative homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|40253638|dbj|BAD05582.1|'    -------------MDR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATASWEVMSRRGEQQQQLMMQAPASH-------------------NGGSGGGEPARSRWAPKPEQILILESI-FNSGM-VNPAKDETARIRRLLER-FG-AVRDANVFYWFQNRRSRSRRRARQLQQACGAALHQLPSAAAAAGAGGGGDYYHHHHQPSSSPFLMHGGGGGGVVTSTTAAPAVAASG--------HFLADEVDGGGDDDLFAISRQMGLMARHGGGDHHYSSYADSDATQLSYQPTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TIQVFINGVAYDVPSGGALDMAGTFGRDAMLVHSSG----EVLPVDEHGVLINSLQMGECYYLVSKSI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [284]
'gi|50511480|gb|AAT77402.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]'                                    -------------MAS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------PNRHWPSMFRSNLACNIQQ-----QQQPDMNGNGSS--SSSFLLSPPTAATTGNGKPSLLSSGCEE---------------------G-TRNPEPKPRWNPRPEQIRILEGI-FNSGM-VNPPRDEIRRIRLQLQE-YG-QVGDANVFYWFQNRKSRTKNKLRAAGHHHHHGRAAALPRASAPPST--------N--IVL----------------PSAAAAAPLTP------PRRHLL------------------AATSSSSSS---------SDRSSGSSKSVK------P-AAA--ALLTSAAIDLFSPA----PAPTTQLPACQ-LYYHSHPT----------------------------------------------------------------------------------------PLARDDQLITSPESSSLLLQWPASQYMPATELGGVLGSSSHTQTPAAITTHPSTI-SPSVLLGLCNE----------------ALGQHQQETMDDMMITCSNPSKV----------------------------------------------------------------------------------------------------------------------------------------------FDHHSMDDMSCTDAVSAVNRDDEKAR----------------------------------------------------------------------------------------------------------------------------------LGLLHYGIGVTAAANPAPHHHHHHHHLASPVHDAVSAADASTAAMILPFTTTAAATPSNVVATSSALADQLQGRLFRDWTCAWHPSSQKDAFNIASLSGLDFRMHRYASFLAVINLPEGGA-APPPPSATVVAVSRDDETMCTKTTSYSFPATM-HLNVKMFGEAAVLVRYSG----EPVLVDDSGVTVEPLQQGATYYVLDGPLLRQRGGSGSSGGRQGQRERVPRRSRRRTAECGPLQHEDGGAEATDELKDDLAVLLPDVGPQLGEEVAGSCKGEQRGGALEDGDGKFGGLVIDHTKKKKKAKGTVIGSSALEQLSSVPEIIVCRSTSKPLANKFIWRNFINRRRSKSITPRPWAAAAVGGGTAGCPLAATLADPGGGRVLVLERGGAPAEFPPLATAGGFVRTLAMADPAPELDAPAQTFVSEDGVPNVRARVLGGATSVNAPILFHNHGEKRQRRNEEEEGEPRPPYLFFYR   [821]
'gi|15218015|ref|NP 173494.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|8886931|gb|AAF80617.1| F2D10.20 [Ara'    -------------MEQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ESLNGRYGSRVMTDEQMETLR--KQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRG-----EYFDPMVASSSAHGMSTRPRWTPTTTQLQILENI-YKEGS-GTPNPRRIKEITMELSE-HG-QIMEKNVYHWFQNRRARSKRKQPPTTTITSSQADDAAVTTTEERGRCG-----DDSGG-----------------------------------------------------------------------------FESYEHILFPSPDLGIEHL-LNRDKFID--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [197]
'gi|89330213|emb|CAJ84165.1| WOX9C protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPRPRWNPRPEQIRILEGI-FNSGM-VNPPRDEIRRIRLQLQE-YG-PVGDANVFYWFQNRKSRTKHKL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
lcl|Smo_WUS_5_2_unnamed_protein_product                                    -------------MDL--------------------------------------------------------------------------------------------------------GSRQHFQTQPPASSSSPPPQPPPAEEQQHHGLVDMESIWTEDSAAMAAAAADAAGVVVDDAFQMPHFLLPPPNLPHNFAQSCLANPAQVMTEEQLETLR--RQISVYATICQQLVEMHKATISHQHTYNGLL-LGHQSPAIQDSSPM-LLGIHHKPTSRQRWTPSQNQLRILERL-FKQGN-GTPNRQRIKEITSELSQ-HG-QISETNVYNWFQNRKARAKRKQRHNNATPST-----TTTSSQHKDAES-----EVETDGD-HSPEE----------KRSKVSSSTPQQQL---QMDQSNTTTE--------------AIGTRYAVVMLNGKAWKVKPGRINVRSNFGDNAVLLD-PRGHVVATSEQGLTLDPLQ----PGGSYTVAV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [342]
'gi|50508276|dbj|BAD32125.1| putative homeodomain transcription factor [Oryza sativa (japonica cultivar-group)]'                     -------------MVADLNSLSSENKSFKLDRSANGKCLSNGRYGDGKVVVKDELMESSLHKYVFVRDIHGEAEPQESGGSNSFAGKRVDALVGAQFRRFDRPDMDGVAVQQQRLGGVAQQRRGVPPPPSRAYVSGPLRDDDTFGGDRVRRRRRWLKEQCPAIIVHGGGRRGGVGHRALAAGVSKMRLPALNAATHRIPSTSPLSIPQTLTITRDPPYP------MLPRSHGHRTGGGGFSLKSSPFSS-------------------VGE-ERVPDPKPRRNPRPEQIRILEAI-FNSGM-VNPPRDEIPRIRMQLQE-YG-QVGDANVFYWFQNRKSRSKNKLRSGG-TGRAGLGLGGNRASEPPAAAT-----AHREAVA----------------PSFT-PPPILP-PQPVQPQQQLVSPVA--------------APTSLSSSS---------SDRSSGSSKPAR------A-TLTQ-AMS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGHGKSSA---------------------------------------------------------------------------------------------------------------------------------------------------MSRPEEAHDVDA----------TK----------------------------------------------------------------------------------------------------------------------------------LGLLQHGFGIITLAVHV-DVASSAAGVLPPIPSSPSPPDAAVTVASVAITASLTDFAASAISTGHWRR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R   [478]
lcl|Smo_WUS_1_1_unnamed_protein_product                                    -------------MTM------------------------------------------------------------------------------------TLRSLICSSPMKDGWIVALPRGGTLAAPLAVSSNLFHFPDAFPGRGTKPRQEIGLRRSMDRQENPRYSKRLRAKAEEKSPVKREPPNADEILLRSALDRPEYHPDFGIVMSAQQLDELR--RQIAVYATICQQLVEMHKASMANPNGTS----SSRPPPPS-------PLPPPVKATTRQRWAPSQAQVKLLESL-YDVGM-GTPHKQRVREITAELSQ-LG-PVNESNVYNWFQNRKARTRRRNRQQPSALGGLEPQN-------FPHRE-----LEEVDSEVDAMEGGGARGSPGVLKRLKPEGAGPSTEHAPHSNASLL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [296]
lcl|Smo_WUS_8_1_unnamed_protein_product                                    -------------M-------------------------------------------------------------------------------------------------KDGWIVALPRGGTLAAPLAVSSNLFHFPDAFPGRGTKPRQEIGLRRSMDRQENPRYSKRLRAKAEEKSPVKREPPNADEILLRSALDRPEYHPDFGIVMSAQQLDELR--RQIAVYATICQQLVEMHKASMANPNGAS----SSRPPPPSPLPPPPLPPPPPVKATTRQRWAPSQAQVKLLESL-YDVGM-GTPHKQRVREITAELSQ-LG-PVNESNVYNWFQNRKARTRRRNRQQPSALGGPEPQH-------FPHRE-----LEEVDSEVDAMEGGGARGSPGVVKMLKPEGAGPSTEHAPHSNTSLL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [290]
'gi|89330193|emb|CAJ84155.1| WOX11/12A protein [Populus trichocarpa]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PVRSRWTPKPEQILILESI-FNSGM-VNPPKDETVRIRKLLEK-FG-SVGDANVFYWFQNRRSRSRRRQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|89330217|emb|CAJ84167.1| WOX11/12B protein [Zea mays] >gi|89330215|emb|CAJ84166.1| WOX11/12A protein [Zea mays]'                 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PVRSRWTPKPEQILILESI-FNSGM-VNPPKDETVRIRKLLER-FG-AVGDANVFYWFQNRRSRSRRRQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|37955223|gb|AAP37140.1| WOX11 protein [Arabidopsis thaliana] >gi|61217578|sp|Q6X7J3|WOX11 ARATH WUSCHEL-related homeobox 11'     -------------MDQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EQTP----------HSPTRHSRSPPSS-------------------ASGSTSAEPVRSRWSPKPEQILILESI-FHSGM-VNPPKEETVRIRKMLEK-FG-AVGDANVFYWFQNRRSRSRRRQRQLQAAAAAAAATTNTCDQTMMVSNS-----LPHHSGS----DLGFGGCST-SSNYLFASSS-----------SSYGGGCDNQSNSGMENLLTMSGQMSYHEATHHHYQNHSSNVTSILCPSDQNSNFHYQQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAITVFINGVPTEVTRGG-IDMKATFGEDLVLVHSSG----VPLPTDEFGFLMHSLQHGEAYFLVPRQT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [268]
'gi|15228599|ref|NP 187016.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|6091768|gb|AAF03478.1| hypothetical'     -------------MDQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EQTP----------HSPTRHSRSPPSS-------------------ASGSTSAEPVRSRWSPKPEQILILESI-FHSGM-VNPPKEETVRIRKMLEK-FG-AVGDANVFYWFQNRRSRSRRRQRQLQAAAAAADATTNTSSSS-----------------------------------------------------SSYGGGCDNQSNSGMENLLTMSGQMSYHEATHHHYQNHSSNVTSILCPSDQNSNFQYQQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCFRVGKKSI------------------------------------------LGGFQPENRFVFIWRLS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [199]
lcl|Ppa_WUS_1_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTEEQLETLR--RQISVYATICQQLVEMHKASVSQQASLPGILASGQ----IVSMDHL-TGTPPHKSTARQRWTPSQHQLQILEKL-FEQGS-GTPNKQRIKEITAELSQ-HG-AISETNVYNWFQNRKARAKRKQQLVTP----------------RDGES-----EADTDVE--SPKE----------KRTRQEGEQNQDESGGVGDTNGGGNSD--------------GAGNGVP-----------EQRAANFDQQDAASSALLH-SQTDTKPDISSFNRSAGFD----PHNVSQ?----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [225]
'gi|9759058|dbj|BAB09580.1| unnamed protein product [Arabidopsis thaliana]'                                    -------------MNQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGASH-------------------SPSSTSTEPVRARWSPKPEQILILESI-FNSGT-VNPPKDETVRIRKMLEK-FG-AVGDANVFYWFQNRRSRSRRRHRQLLAATTAAATSIGAEDHQHMTAMS-----MHQYPCSNNEIDLGFGSCSNLSANYFLNGSSSSQIPSFFLGLSSSSGGCEN--NNGMENLFKMYGHESDH---NHQQQHHSSNAASVLNPSDQNSNSQYEQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GESFIHL----------------------------------------------------HGSYFFLTP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [219]
'gi|30686531|ref|NP 197283.2| DNA binding / transcription factor [Arabidopsis thaliana] >gi|37955225|gb|AAP37141.1| WOX12 protei'    -------------MNQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGASH-------------------SPSSTSTEPVRARWSPKPEQILILESI-FNSGT-VNPPKDETVRIRKMLEK-FG-AVGDANVFYWFQNRRSRSRRRHRQLLAATTAAATSIGAEDHQHMTAMS-----MHQYPCSNNEIDLGFGSCSNLSANYFLNGSSSSQIPSFFLGLSSSSGGCEN--NNGMENLFKMYGHESDH---NHQQQHHSSNAASVLNPSDQNSNSQYEQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGFMTVFINGVPMEVTKGA-IDMKTMFGDDSVLLHSSG----LPLPTDEFGFLMHSLQHGQTYFLVPRQT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [268]
'gi|89330195|emb|CAJ84156.1| WOX11/12B protein [Populus trichocarpa]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PVRSRWTPKPEQILILESI-FNSGM-VNPPKNETVRIRKLLEK-FG-SVGDANVFYWFQNRRSRSRRRQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
'gi|15237035|ref|NP 195280.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|37955227|gb|AAP37142.1| WOX13 protei'    ------------MMEW----------------------------------------------------------------------------------------------------------------------------------------------------------------DNQLQPNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLR--KQIAIYGTICERLVEMHKTLTAQQD-LAGGR-MGG-----LYADPM-MSSLGHKMTARQRWTPTPVQLQILERI-FDQGT-GTPSKQKIKDITEELSQ-HG-QIAEQNVYNWFQNRRARSKRKQHGGGSSGN-------------NNGES-----EVETEVE--ALNE----------KRVVRPESL-------LGLPDGNSNNN--------------GLGTTTATTT--------APRPEDLCFQSPEISSDLH--------LLDVLSNPRDEH----LVGKMGLAESYNL--YDHVEDYGMSG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [268]
lcl|Ppa_WUS_2_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTEEQLETLR--RQISVYATICQQLVEMHKASVSQQASLPGILAGGQ----IVSMDQM-TGTPTHKSTARQRWTPSQHQLQILEKL-FEQGS-GTPNKVRIKEITAELSQ-HG-AISETNVYNWFQNRKARAKRKQQLIMPGGPLEVGL-ISSDVTPKDGES-----EADSDGE--SPKE----------KRTRQKGDQNQDESVGIGDPHGGGSFD--------------GAGNGVP-----------EQKAVNSDQQDATSSALLH-PQADTKPDISSFNRGAGFD----PYNMPQ?----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [240]
'gi|56201899|dbj|BAD73349.1| putative HB2 homeodomain protein [Oryza sativa (japonica cultivar-group)]'                              -------------MEW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------DKAKASSGEAVDDRGGGEGGLGYVKVMTDEQMEVLR--KQISIYATICEQLVEMHRALTAQQDSIAGMR-LGN-----LYCDPL-MVPGGHKITARQRWTPTPMQLQILENI-FDQGN-GTPSKQKIKDITAELSQ-HG-QISETNVYNWFQNRRARSKRKQAALPN----------------NNAES-----EAEADEE--SPTD----------KKPKSDRPLHQN----IAMRDHNSERI--------------SEMHHFDTE---------HEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSNPRIDH----FLGKVESPGSFPHMRSGESFDMY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [267]
'gi|34909272|ref|NP 915983.1| putative HB2 homeodomain protein [Oryza sativa (japonica cultivar-group)]'                             -------------MEW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------DKAKASSGEAVDDRGGGEGGLGYVKVMTDEQMEVLR--KQISIYATICEQLVEMHRALTAQQDSIAGMR-LGN-----LYCDPL-MVPGGHKITARQRWTPTPMQLQILENI-FDQGN-GTPSKQKIKDITAELSQ-HG-QISETNVYNWFQNRRARSKRKQAALPN----------------NNAES-----EAEADEE--SPTD----------KKPKSDRPLHQN----IAMRDHNSERI--------------SEMHHFDTE---------HEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSNPSTSYKHPCFI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [250]
'gi|3955021|emb|CAA09367.1| HB2 homeodomain protein [Populus tremula x Populus tremuloides]'                                    KLVFYDCQSIAGRMDW------------------------------------------------------------------------------------------------------------------------------------------------------DNNQENHQDSHQNQRECRNGINGT--NVNVNGNGGTNMLYVKVMTDEQLETLR--KQIAVYAAICEQLVEMHKTLSAQQD-LAGGR-LGN-----LYCDPL-MASGGHKITARQRWTPTPVQLQILERI-FDQGN-GTPSKQKIKEITSELSQ-HG-QISETNVYNWFQNRRARSKRKQLVASS----------------NNAES-----EVETEVD--SLNE----------KKKPEIFHAQQN-----------------------------------------------PPRAEDLCFQSPEISSELH-FLG-------------DDH----LTGKVGVPGNYNL--YDQAEDYGMAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [261]
'gi|40233087|gb|AAR83341.1| homeodomain protein HB2 [Populus tomentosa]'                                    ------CQSIAGRMDW------------------------------------------------------------------------------------------------------------------------------------------------------DNNQENHQDSHQNQRECRNGINGTNVNVNVNGNGGNNTLYVKVMTDEQLETLR--KQIAVYAAICEQLVEMHKTLSAQQD-LAGGR-LGN-----LYCDPL-MASGGHKITARQRWTPTPVQLQILERI-FDQGN-GTPSKQKIKEITSELSQ-HG-QISETNVYNWFQNRRARSKRKQLVASS----------------NNAES-----EVETEVD--SLNE----------KKKPEIFHAQQN-----------------------------------------------PPRAEDLCFQGPEISSELH-FLG-------------DDH----LTGKMGVPGNYNL--YDQAEDYGMAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [257]
'gi|30686974|ref|NP 173493.2| DNA binding / transcription factor [Arabidopsis thaliana] >gi|20152544|emb|CAD29665.1| homeodomain'    -------------MVK----------------------------------------------------------------------------------------------------------------------------------------------------------------------KKKEKEKSKEIEEMDREIQNGAYSGRVMTEEQMEILR--KQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVG-----GYFDPMGASSSSHRISTRHRWTPTSTQLQILESI-YDEGS-GTPNRRRIREIATELSE-HG-QITETNVYNWFQNRRARSKRKQPQTTTANGQADDVA--VTTEERRSCG-----DSGG------------------------------------------------------------------------------LESYEHILFPSPDLGIEHL-LSIGKFMET-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [211]
lcl|Smo_WUS_2_1_unnamed_protein_product                                    -------------MGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FEDGGPCDYNVK--RIVNFTGLDRLRAVSVHLCVFTGASQTPLSFLSFFAVDRSPYLQIECRGAQAAGIAGIQRWEPNSDQLQILEEF-YANST--PPSP----EITDLVGR-YG-AVDHSNVYYWFTNKNSREKRKRRRLEEAPASPAIAPTRFITYIASHAA-----SDEEWITTSLSLSLSF--------------DQSHRSFTFLSLRDREVSER--------------ALLSSFFSSNKNGSLHQSYAPQIVNDGSSLP?----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [224]
lcl|Smo_WUS_11_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------?LSLTVFTRPAKVQKNLPNTYRVGENFSGYVLKYAQGNVGRSAGNRSIPGRMRRCEQQAASSPASSESDQIDQERDINTELLELKALHMHHRSRRKHIEISSV---------------------PAPPAPTRPAQQRWRPNSQQLAILEEF-YAKGT--PPSQENVTEIAELIGH-HG-PVDESKVYYWFQNKKSREKRKRRRIEEANAVSGASASSSPAAASATAA-----FQQ-------------------------------------DLSSSAPSAS--------------ASASSGSEQLHHPAAQSYAAAQIVIDGGVV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIIDDKSPFDLVGHFGDGAALFDPALGRIVPTNERGVTLEPLESRAYTLVWLIPLGARSIADRELRQYGDPPWRL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [319]
lcl|Smo_WUS_17_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MICGKVFTGVTKSIDPGRMRRCEQQAASSPASSESDQIDQERDINTELLELKALHMHHRSRRKHIEISSV---------------------PAPPAPTRPAQQRWRPNSQQLGILEEF-YAKGT--PPSQENVTEIAELIGH-HG-PVDESKVYYWFQNKKSREKRKRRRIEEANAASGASASSSPAAASATAA-----FQQ-------------------------------------DLSSSAPSAS--------------ASASSGSEQLHHPAAQSYAAAQIVIDGGVV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIIDDKSPFDLVGHFGDGAALFDPALGRIVPTNERGVTLEPLESRAYTL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [260]
lcl|Smo_WUS_9_1_unnamed_protein_product                                    -------------MAP-------------------------------------------------------------------------------------------------------------------GSATPSPSRPTGFVVAESQAQAPAVMPIPVIPVAVPGSSSPSLLLMQRQQLPMPAALPTTGDSRVMTEDQLAQFAEQIRQFSEISRFS--IQRQKASMDAERQRRTHKSGFRGSS----------------------SNTERPPGATRPRWKPTPVQISILEYI-FENSD-LLPGDKDITIITDGLRL-YG-PVEEVNVFYWFQNRRARAKRTANQEHHPKFVSSSKQISHAPVVLNPWS-----YS----------------------------KLGSHSCKELSASVNQTSMT--------------TSAENTNESYHIWLHTFVLHSPPRIKHQSSVSLTIGC-HCLVFKAMPAHLRVNFSSD----FDQACCSTSLQRSD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [307]
'gi|89330219|emb|CAJ84168.1| WOX13A protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TARQRWQPTPMQLQILENI-FDQGN-GTPSKQRIKEITAELSH-HG-QISETNVYNWFQNRRARSKRKQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [65]
lcl|Ppa_WUS_3_1_unnamed_protein_product                                    -------------MAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EQRASTNPPTRSRWSANQQQLQNLESI-FEQGNGNTPNKARIKDITIELNQ-FG-HISETNVYNWFQNRKARAKRKLQQRVGRTRRLSCTATGSTCKMRSGEA-----EISGDVQPYLPDA------------KRLKAVGPQSQSATGSAATPASALD--------------AGSS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IAAAEIDTELRSRPALMPLTSISGIL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [171]
'gi|3955019|emb|CAA09366.1| HB1 homeodomain protein [Populus tremula x Populus tremuloides]'                                    -------------MEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRFQNGGGLGVKVMTDEQMEMLR--KQISVYATICEQLVEMHKAVSAQQD-FAGMG-LGN-----PYCDPL-LSSAVHKIGSRQRWTPKPAQLQILEQI-FEQCN-ATPGRQKIKDITRELAQ-HG-QISETNVYNWFQNRRARSKRKQSAVVP----------------NNGES-----EMETDIE--SLKE----------KKTRAEDSQPDENT---------------------------------------------TPMADHMYFNSPDIGFD---------------------Q----LMGKIESPGPGSCIPYWQMEQYDLFG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [217]
'gi|40233103|gb|AAR83342.1| homeodomain protein HB1 [Populus tomentosa] >gi|40233067|gb|AAR83340.1| homeodomain protein HB1 [Pop'    -------------MEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRFQNGGGLGAKVMTDEQMEMLR--KQISVYATICEQLVEMHKVVSAQQD-FAGMG-LGN-----PYCDPL-LSSAVHKIGSRQRWTPKPAQLQILEQI-FEQCN-ATPGRQKIKDITRELAQ-HG-QISETNVYNWFQNRRARSKRKQSAVVP----------------NNGES-----EMETDIE--SLKE----------KKTRAEDSQPDENT---------------------------------------------TPMADHMYFNSPDIGFD---------------------Q----LMGKIESPGPGSCIPYWQMEQYDLFG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [217]
lcl|Smo_WUS_3_1_unnamed_protein_product                                    -------------MCR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIEPSERAGVRS--INRCRDGSIGDFREESRKEGIASSVPEP-------------------PSPPGPARPAQPRWRPNEEQLAILEDF-YKQGT--PTSQENIDTITELLRH-RG-PAELNKVYSWFQNKKSRDKRKRRRIEEGAGTSGSFAIATTVAFQSSAA-----SS?-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [144]
lcl|Smo_WUS_15_1_unnamed_protein_product                                    --NRIADHIFAFRMSR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAVSPRASSQVDR--RTQILELKALHKEHRIRSRSVHFFAFVCCLTDTAIVLSQGQRENN--DLVAASARPPHERWLPNREQLAVLEDL-YSKGT--MPSQENIAEIVDLVDHDHG-PVSESKVYFWFQNKKARERRQRRRIEEANAASGACASAIATTAAASAS-----SGSGPESSLITLRNVDDGVAPAIVPTNERGALECSLEHFNDRMKSPSRKT--------------SPSIAQFEVMNHAIRLRPWSSSSMVALHINNMSTAKA-AIYFQ?----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [264]
lcl|Smo_WUS_16_1_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?SHRRSHF--CKQILELKALHKEHRIRS----------------------QRENN--DLVASPARPPHERWLPNREQLAVLEDL-YSKGT--MPSQENIAEAVSLVGHDHG-PVSESKVYFWFQNKKARERRQRRRIEEANAASGACASAIATTAAASAS-----SGSGPESSLITLRNVGDGVAPAIVPPTSAALWSAV?----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [166]
lcl|Smo_WUS721095303_1_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?SHRRSHF--CKQILELKALHKEHRIRS----------------------QRENN--DLVASPARPPHERWLPNREQLAVLEDL-YSKGT--MPSQENIAEAVSLVGHDHG-PVSESKVYFWFQNKKARERRQRRRIEEANAASGACASAIATTAAASAS-----S?--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [132]
lcl|Smo_WUS_4_1_unnamed_protein_product                                    -------------MPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKQQASRASSVSDQIDQER--REMRLEIKALHVHHRSQRNNTNISS----------------------EPAPPRPVGVQQRWEPNSYQLQILEEF-YAKAT--PPSPENIANIAELV----G-QVDHSKVYYWFSNKKSREKRKRRRLEEAAASASSSPAFSAIA-----------------------------------------------------------TT--------------AAASSGSEQSHHQS----YADQIVNDGSFLPDACLFE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TNVTLEQPRIIPSHEEESPLQLSLGWSFANLDEHWEFS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [209]
lcl|Smo_WUS_13_2_unnamed_protein_product                                    -------------MPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKQQASRASSVSDQIDQER--REMRLEIKALHVHHRSQRNNINISS----------------------EPAPPRPVGVQQRWEPNSYQLQILEEF-YAKAT--PPSPENIANIAELV----G-QVDHSKVYYWFSNKKSREKRKRRRLEEAGASASSSPAFSAIA-----------------------------------------------------------TT--------------AAASSGSEQSHHQS----YADQIVNDGSFLPDACLFE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TNVTLEQPRIIPSHEEESPLQLSLGWSFANLDEHWEFS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [209]
'gi|15237356|ref|NP 199413.1| transcription factor [Arabidopsis thaliana] >gi|9757721|dbj|BAB08246.1| unnamed protein product [A'    -------------MSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSNKNSN--KDHDDHHNDQGQHNTIHTPSFMHTFEISNIS----------------SPSSPVVSDPKPEWKPNQHQAQILEEL-FIGGT-VNPSLTSIKQITIKLQS-YGEEVDDADVYKWFHNRKYSRKPKLVSYFMFL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [122]
lcl|Smo_WUS_6_1_unnamed_protein_product                                    -------------MME---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ESHYQQQQQQQQQQ-------------------ALQELPPAVVKVRWKPNEEQLRMLVRL-FEEEG-DSINKQRIKEIAVDLAR-QG-DVTEANVHNWFHNRKARAKRKQKQMQQNDGESEVDTDVDSKGKRSKLD-----HH----------------------------HHHHHHHHEANATSKIAAAT--------------SPPNGTLFLPEFSQPEPQQASQASIRRHQL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYENVRKLTDAYSSPPPLGSSATTAAATPPPPPPPSCHRYRAHGQVSDASVRILLLGFS?------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [228]
lcl|Smo_WUS_10_1_unnamed_protein_product                                    -------------MME---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ESHY----QQQQQQ-------------------ALQELPPAVVKVRWKPNEEQLRMLVRL-FEEEG-DSINKQRIKEIAVDLAR-QG-DVTEANVHNWFHNRKARAKRKQKQMQQNDGESEVDTDVDSKGKRSKLD-----HH----------------------------HHHHHHHHEANATSKIAAAT--------------SPPNGTLFLPEFSQPEPQQASQASIRRHQL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYENVRKLTDANSSPPPLGSSTTTAAATPPPPPPPSCHRYRAHGQVSDAS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [214]
;
END;


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