#NEXUS 
[MacClade 4.08 registered to obaramari, ERATO hasebe project]


BEGIN DATA;
	DIMENSIONS  NTAX=38 NCHAR=4885;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|42569166|ref|NP 179582.2| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    M----MTTTMDYNSSDQGFSWSEIALLGSVETMLEKVYGKHNHHPPIKV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ETRRRLSSISEELALETLRKVLNMPN--VKTLDGIIIYFLNDAVTVDGSPRLW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGESPVQFPRTPGKKSCRASQAEVSLDREDPSPKFLRGDENGESKHISLL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LALGELEFKKAFLLLTYLGG------KS----------------------------------------------------------------LGEVISGDEIRQWKDLPMVAYERAVWFKLGQ-----NEERMQLESD-----------------------------------------SGKTHYYQCHVAPDGSYRLK------------GYFLENTGTHLHKVLG---DDNVLTVRFDQLPK----------------------------------------------------------------ESTYCDNPYSKYKEIAKNGIMV-------GLRRYQFFVFKDGGKAEKKKRN--------STKQVKCYFIRTGSTASS-------------------------------------DMENPYI---------LSGMSIHEARMHFM---HVHT----LP--SPANYMARFSL-----IL-------------------SKTKKL--------------EVDMTEITVMQ---IDDIHCHDQSNNDVL--------DKNGKPRIHSDGTGYISEDLARMCPLNIFK-------------------GKSMRSNNI---------QGTCVQEPPLLIQIRMFNDGSAVKGIFLL--NK-N-------------------------LP-----PQTVQVR-PSMIKV---------------------YKDKNLS--NFSTFNSLEVVTT----------SNPPKRAKLSKNLVALLSYGG----------VPNDFFLDILLNTLEKK---------KTIFFKVRAAGK----AALHYGNMD-----------------------DKNALQMIMAGIPL---DEPYLKHYLSKLLKLEK-DDLK-AGKLPIDE--SYYLMGTVDPTG--ELKED---------------------EVSGLA-------------------------------------------------KSQDV-LVYRNPGLHF--GDIHILKATYVKS----------LEQ----------YVGNSKYGVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPKL--LEHY--KPSEPWVSSSPR--SKIYTGRQP---------SELSPEQ------------------------LEEELFK----------------------------------------------------------------------------------------IFLKTGFSPSS-VIGQAADSWLAIM---DRFLTLGDENV--KEKAEMKKKML---------------------------KLTDIYY----DAIDAPKTGTE---------VN---------------LPLD----VKVD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LF-P---HYMERN-----------------------------------KT---FK--------------------------------------------STSILGLIFDTVDFHNAEDTTP---------------------------------SGISKLQCFED----------------------------------------------EPVSEFDMEKCKLW---HKDYRKEMCQAMNSDD------------------------------------------------------------------------------DDSCNEVIQKYKQEFYS-----------------------AAGFKESKKILEELYPKALALYNVT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [927]
'gi|42569164|ref|NP 179581.2| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    M---------MNNGCDEVSPRSEIALLGSVETMLEKIYEKHNHRLPISV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ETRRKLSSISEELALETLRKVFNKPY--LKTLDGLIMYFVKGTVTVDGSPRLS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------PGESPVQSPRTPAKKSCRASQ-DVSLDLETPSPKFMKREENGGSKYIPPL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LALGELEFKKAFLLLSYIGGESL---------------------------------------------------------------------VEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGD-----------------------------------------SGMTHYYQCHVATDGSYKFK------------GHLLENTGTHLHKVLG---DDNVLTVKFDKVLG----------------------------------------------------------------VETYCNDLYSTYKGIAKNGIMV-------GLRRYRFFVFKDGGKEEKKKDV--------STKGVKCYFIRTDSTASI-------------------------------------DMQNPYI---------FAGKSMHEARMHFM---HVNT----LS--SLPNYMSRFSL-----IL-------------------SKTKTL--------------EVDMTGITFEQ---IDDIHCHDQDDKDVL--------DKNGKPCIHSDGTGYISEDLARMCPVNIFK-------------------GKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLT--NK-K-------------------------LP-----PRTVQVR-PSMIKV---------------------YEDRTLS--NLSTFNSLEVVTT----------SNPPRKARLSRNLVALLSYGG----------VPNDFFLNILRNTLEES---------KTIFYSERAAFK----AAINYGD-------------------------DQYTADMILVGIPL---DEPYLKDRLSYLLKTER-NALK-AGRFPIDE--SYYIMGTVDPTG--ELKEN---------------------EICVIL---------------------------------------------HSGQISGDV-LVYRNPGLHF--GDIHVLKATYVKA----------LED----------YVGNAKFAVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPKL--LEHF--KPSEPWVSSSKP--SKIYCGRKP---------SELSEEE------------------------LEEELFK----------------------------------------------------------------------------------------MFLKARFCKRD-VIGMAADCWLGIM---DPFLTLGDESA--KEKYERKKNIL---------------------------KLIDIYY----DALDAPKKGAK---------VD---------------LPPD----LEIK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NF-P---HYMERDP---------------------------------KRD---FR--------------------------------------------STSILGLIFDTVDSHNAEEPPP---------------------------------SEISKLWYFED----------------------------------------------EPVPKSHMDKFTSW---YENYRSEMSQAMMETDK--------------------------------------------------------------------------VKRNQLTNEVIQRYKQDFYG-----------------------AAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAKC------------------------------------------------------------------------------------------------------------------TFAWNV----------------------------------------------------------------------------------------------------AGPVLCKFYL-KKTKDKSVVASTSVL-----KKLLG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [992]
'gi|42569168|ref|NP 179583.3| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    M--------------NQASSRIRIALSGRIETALENIYRKHN-LTPIND-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ETRQRLSSIPENLGFELVRKVFSLQAGLIYNLDSFIVSKVNQAVSFTGYPQPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSLSP------SGRHVSRVLQEEMSVDSDAPSPKSLKSEDKGGSLHIPQL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VALGELEFKKVFLLLSYIPG------QH----------------------------------------------------------------VGQVITADEIRLWKDLPMVEYEAAVWDRLGRHYC-PQKDRRMLQWD-----------------------------------------SGKTHYYQCNVAPNGSYTFKVLSA------LQGPLLEHTGTHLHKVLG---DDNVLTVKFADVQK---------------------------------------------------------------SSSTYSIDHYFTYKGIAKNGIMI-------GLRRYQFFVFKDGGKEEKKKDL--------STKKVKCYFIRTDSTAFY-------------------------------------DMQNPYI---------LTGKSIYEARMHFM---HVHR----AP--TLANYMARFSL-----IL-------------------SKTKTL--------------EVDMTGITFDQ---IDDIHCHDQDGKDVL--------DKNKKPCIHSDGTGYISEDLARMCPLNIFK-------------------GKCLRSESI---------QEACYQDPPLLIQFRMFYDGYAVKGTFLL--NK-K-------------------------LC-----PRTVQVR-PSMIKV---------------------SKDPSLS--NFSTFNALEVVTT----------SNPPKRTKLSKNLVALLSYGG----------IPNEFFLDILLNTLEES---------KSIFYNKRAALN----AALNYGEMD-----------------------DQNAAQMILVGIPL---DEPHLKNYLSILLKTEK-NDLK-AGKLPVTE--SYYLMGTVDPTG--ALKED---------------------EVCVIL---------------------------------------------ESGQISGEV-LVYRNPGLHF--GDIHILKATYVKA----------LEE----------YVGNSKFAVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPEL--LENF--KPSEPWVSLTPP--SKSNSGRAP---------SQLSPEE------------------------LEEELFE----------------------------------------------------------------------------------------MFLTAGFHASN-VIGIAADSWLTIM---DRFLILGDDRA--EEKAEMKKKML---------------------------ELIDIYY----DALDAPKKGDK---------VY---------------LPNK----LKPD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IF-P---HYMERD-----------------------------------KK---FQ--------------------------------------------STSILGLIFDFVKSQTTEEPSPSS--------------------------------EISKLPCFED----------------------------------------------EPVSEFHMQKCRLW---YDNYRTEMTQAMKTDK------------------------------------------------------------------------------DESANEVIQRYKQEFYG-----------------------AAGFEDSKKSLEELYPQALALYKIVYDYAIHAGVSKC------------------------------------------------------------------------------------------------------------------RFVWKV----------------------------------------------------------------------------------------------------AGPVLCRFYLNKKMQEKCLVCAPSVL-----KELWG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [977]
'gi|34903600|ref|NP 913147.1| P0419B01.13 [Oryza sativa (japonica cultivar-group)]'                                    M----YNPIGSAEAREPAELPAAVAAELERLEGRLRQLAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EARRHLAVLGEAGAARVLRAVAESRR--VRTLPGFIKYLAKREAAITRRDARGVPTALSAPAFISGPSREEESVYTQLFDNEVQMYDQSPSNEMATSLSNHGMVEVGSPNQQMPFHLHGNGGSVRQIARLVPQLAQLTVESPCGHTSSV-SQNQGCIEVGTPTQAM-----------IDSPARAMAPAVPNDVMMQV-GSPCRCMPSGLQNYIEIDSPIQPMISTPR---RVSTPSSVQDISRLIENMAGPSVSPPSPITAMPQNPTTTCHTTDNALREAASPQM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LALEELGFRKIFMVFAYLA----------------------------------------------------------------------SEKIENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAASDRAK------------------------------------------------------------------------------GPYIENTRTHLQKVVG---DDNVLVVKFMGKLS---------------------------------------------------------------DTKTDFSTYCEHYHKVAEDGIVL-------GLRRYRFFVYKDGGKEEKLKQEKIEDKNK-CTSPVMCYFVRTESGW---------------------------------------NMDEPYI---------LSGRTVGQARELFM---HISS----AP--TLAKYMARFAL-----IL-------------------SKTITW--------------DADLSAVYVRR---IKDEPCMDRHGNVV---------HKDQEPLIHTDGTGLVSVDLALNCPTSIFK--------------------------------------GKFLKPQPLLMQFRLFYNGSAVKGTVLV--DR-R-------------------------LP-----PATILIR-PSMVKIETHPELSGVRSVNSSEIVSARNAKKSLS--GVQSVNSFEIVST----------SNRPRRTLTSRFLITLLCYGG----------VPEEYFLELLQSAIEGA---------ENACYDYEDALR----IAFSYADME-----------------------DSMSARMILSGIPL---EESYLQHRLDFMAQQER-KGIK-QGKIPIDE--CYYLMDTTDPTG--TLRPN---------------------EVCVIL---------------------------------------------ENGQFSGDV-LVYKHPGLHF--GDIHVLKATYIRD----------LEK---------EYVGYAKYAILFPISGP----RSLADEMANSDFDGDIYWVSKNPKL--LEHF--KPSEPWVQAIKPKKTK---QKKP---------QDCNESK------------------------LERLLFH----------------------------------------------------------------------------------------EFLKTRFTPSF-ALGTAADSWLAYM---DRLLTDSLDE---IEKKLIEEKML---------------------------KLVDLYY----LALDAPKTGNK---------VN---------------IPSD----LMVK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QY-P---HFMGR-----------------------------------SFS---YH--------------------------------------------SSSILGQIYDKAEDVESLRSCN------------------------------VQPIGVSLLPCFME----------------------------------------------REAPPAARHLWQHR---YEEYLTDSTMLYRAMVD------------------------------------------------------------KEERNM-------------KFQELYEKYKHMLYD-----------------------ASEFEQTQRDPDDVFSEACVIYQIVYEKARWSNDASRC-----------------------------------------------------------------------------------------------------------------GFAWKV----------------------------------------------------------------------------------------------------AGRALCHFYALKNEGDTALCSLPLLR-----KI-IKKDHRRNQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1148]
'gi|34903602|ref|NP 913148.1| P0419B01.14 [Oryza sativa (japonica cultivar-group)]'                                    M-----NPHGGGNQMREPALPAAVGAELERLEARLGQLACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EARRQLAELGEPAAARVLRAIGEARQ--VRTLSGFIRHMANQERMKRNARGIP---TAHSAACISGPCREEESISTPLYYNEVQMDAQTPND----------MVEVGSPNQQMPLRLHDNGGSVGHIARVVPDLANPAVGSPYGRISSVLLQNQNCVEGYTPSRGMVSPASNQVAVQINFPTQPMAHALPNDVMMQV-GSPGHRMPSGLQRHMEIDSPIQPIVSTPE---RVSTPSPVRDLSRCVENMAGPSGSPPCPIWVMPQIPPAICPDTTNVLREVVSPQM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LALGELEFRKIFMIFAYLSWNKKGVKPP--------------------------------------------------------LSTPKSSKIEDVLSVDSIRSLKSMSMAQFESRIWSTFGHDNISSSDRAKNLDSG-----------------------------------------PGMSKVYHCNVEIRGGTVVKIFK---------GPYIENRRTHLQKVLG---DDNVLVVKFMEISS---------------------------------------------------------------DTETDLSTYLEHYHKVAEEGIVL-------GLRCYRFFLYKDGGKENKMKEENREEENKKCTSSVRCYFVRTESGW---------------------------------------NMDEPYI---------LSGRTIGQARDLFM---HIRT----VL--TLAKYMLRFAL-----IV-------------------SKTITL--------------DVDLSEVLVKL---IDDEPCLDEHGKEV---------FRDGERLIHTDGTGLISEDLAQKCTYSNSK--------------------------------------GKLLEPQPLLIQLRLFYNGSAVKGTVLV--DK-RNTQENFIIYDYVKVVYKKSRIYPCFIQ-----DRTIHIR-PSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLS--GVQSVNSFEIVSTSYTSRITCHLSNRSGRTFTSNNLIALLHYGG----------VPEEFFMELLQTAIEEA---------DNARFDYAGALN----IAFNYADME-----------------------DSMPARMILSGIPL---EESYLQSRLDFLSLLER-KGIK-NGKIPIDD--CYYLMGTADPTG--KLGPN---------------------EVCVIL---------------------------------------------DYGQVSGDV-LVYKYPGLHP--GDIHVLKATYSSD----------IEK----------VVGNSKHAILFPTTGQ----RSLADEMANSDFDGDIYWVSLNPKL--LEHF--KPSKPWVPAITPNGTK---QKGP---------EDFNESE------------------------LERVLFH----------------------------------------------------------------------------------------EFLKTRFAPSY-ARATAATNWLVYM---DRLLTVSLDE---SEKKLIEKKML---------------------------KLVDLYY----LALDAPKMGNK---------VN---------------IPRD----LMVK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QY-P---HFMDR-----------------------------------SPS---YH--------------------------------------------SSSILGKIYDKAGDPKPLRSDN------------------------------VQPTSISSLPCFAE----------------------------------------------RDVPPAIKQLWQHR---YNEYLADSSLLYAEEAD------------------------------------------------------------EEEKKI-------------KFQELYEKYKHLLYG-----------------------ASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARC-----------------------------------------------------------------------------------------------------------------GFAWKV----------------------------------------------------------------------------------------------------AGRALCHFYTVKNEGNAVVCSLQLLR-----NFRFTKKYRK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1222]
lcl|Smo_RDR4_3_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSAPRVPKSLMYTCDVDEHGRISYQ------------RPYYEDGRTPLQRAFG---DDKVLQVRFNCQGV----------------------------------------------------------------------TSPEMYRDIIERGFDV-------GLRHFEYFVHKEEKKRKNMRKVK-------QTRQQRSFFVCTKSIAAS-------------------------------------DLVDPHF---------LKFRSMDACRKYIM---HIHT----VP--CLQLYNKRLQL-----AL-------------------SKTWTANHDPGGEIAV-----------------------------------------GCNGKPLIHTDGTGFISEDLAKQVAVNTSE-------------------------------------------EYPALLQVRLFYHGIAVKGTLLT--LK-T-------------------------LQ-----HKTIVYR-DSMLKV---------------------KADPKLA--NCPSFNSLEICTT----------SHKPPVASLSRYVIALLLEGG----------VPESFFIQVVQEAIAKA---------MTPLQDIAAAHR----LCSRFSF-------------------------GDMPRRMILAGIPL---TDHFLRNSLMTMIRTQL-KRYA-KANVPLEG--SYYLMGSADPTN--TLARN---------------------QVAILL--------------------------------------------ENGPLHRHKV-LVYKHPGMHP--GDVHVFEATWNQE----------LES----------CLGNSKYVIIFPTKGP----RSVVHEIANSDLDGDLYWICTNEQV--SNLY--KPQLPWQEKRTNGTTAVPSC------------LGMSPEV------------------------IMSRLVA----------------------------------------------------------------------------------------MFLRAIFKPNF-AISRAATNWLIHM---DKYLSTSF--DNVREREFRQNCLL---------------------------ELADLYY----LALDADKTGEMVILVGVKTLVT---------------IEDR----LLCD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIKP---HFLVEENSNNPNRRKI------------------------QQQDNVYR--------------------------------------------STSIFGKIYNLVTEVIENEAKE-----------------------------------FTGPLMFYE----------------------------------------------EFVYGNYLSYKDLWRQHFNNYRLEISLALTRNRP-------K-----------------------------------------------------------------------TAEEIPAPYWQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [685]
lcl|Smo_RDR4_5_1_unnamed_protein_product                                    M----GDAREEEPVARKRLFHGWSQDDVEEFLEQDDAVMSQLPVSPED-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RALGELDFYKRYLIQCLAKGR---------------------------------------------------------------------------LGVEELRQMKDVKCEAFESYLCSLVNARQR--------------------------------------------LPLNNSASGVPKSLMYTCDVDEHGRISYQ------------RPYYEDGRTPLQRAFG---DDKVLQVRFNCQGV----------------------------------------------------------------------TSPEMYRDIIERGFNV-------GLRHFEYFVHKEEKKRKNMSKVK-------QTRQQRSFFVCTKSIAAS-------------------------------------DLVDPHF---------LKFRSMDACRKYIM---HIHT----VP--CLQLYNKRLQL-----AL-------------------SKTWTAN---------------------------------------------------------------------------------------------------------------------------EYPALLQVRLFYHGIAVKGTLLT--LK-T-------------------------LQ-----HKTIVYR-DSMLKV---------------------KADPKLA--NCPSFNSLEICTT----------SHKPPVASLSRYVIALLLEGG----------VPESFFIQVVQEAIAKA---------MTPLQDIAAAHR----LCSRFSF-------------------------GDMPRRMILAGIPL---TDHFLRNSLMTMIRTQL-KRYA-KANVPLEG--SYYLMGSADPTN--TLARN---------------------QVAILL--------------------------------------------ENGPLHRHKV-LVYKHPGMHP--GDVHVFEATWNQE----------LES----------SLGNSKYVIIFPTKGP----RSVVHEIANSDLDGDLYWICTNEQV--SNLY--KPQLPWQEKRTNGTTAVPSC------------LGMSPEV------------------------IMSRLVA----------------------------------------------------------------------------------------MFLRAIFKPNF-AISRAATNWLIHM---DKYLSTSF--DNVREREFRQNCLL---------------------------ELADLYY----LALDADKTGEM---------VT---------------IEDR----LLCD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIKP---HFLVEENSNNPNRRKI------------------------QQQDNVYR--------------------------------------------STSIFGKIYNVVTEVIENEAKE-----------------------------------FTGPLMFYE----------------------------------------------EFVYGNYLSYKDLWRQHFNNYRLEMSLALDEKSA-------E-----------------------------------------------------------------------KTDEIAAQYCQMLYT----------------------GSTNLDGAKKSIYQIYQESCAIYSVVHDH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [769]
lcl|Ppa_RDR4_4_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KEWLTKGPFSFECNVDKHGVCKFKASTSTSMILNVEVVKPRPASTLLHRTFG---EDRVMPVYFNESPT-------------------------------------------------------------------------EDKFQLVRDGILV-------GLRRYRLWNV---------------------------------------------------------------------------DLADSNF---------KYFKTIEAARCHIV---HIHT----VP--TMSKFASRLQL-----AL-------------------SKSVTA--------------NLNWDEIKVRQ---IPDILSTTL--------------DNSGKFMSHTEGTAEISPDVARLIPCSVFK------------------------------------GKVNKSMGYPTLIQGRLFWKGMAIKGTWQV--NH-Q-------------------------LK-----GLQILYR-PSMVKV---------------------TTDAALK--DFPTINSFEIVNTNTC-------YKLKEEAKLSQDLIFLLSVNN----------VPASFFLEHVEKALENL---------HSFFTTRGQVFRELKRCSQDYDV-------------------------GDQTLRMIMANIPM---NNPQMQKNLKKISQDKI-ALLR-KGCVPLPQ--SCYLMGTCDPTKERVLKPN---------------------EVAVI---------------------------------------------KNGDKVLGKV-LVYKNPGKHW--GDVHVFDAVWDER----------LNP----------YVGPANQTIFFSVRGN----RPVVDEIANSDLDGDFYWVFGLLQL--ISLF--TPSPPWTRIGER--TSYPVGNGP---------SSLTPRA------------------------AEYALFE----------------------------------------------------------------------------------------KFLNSRFKTYK-PMPLSATYWIAHM---DRYLTLKYADEYSEELELLSETIL---------------------------ELIDIFY----RALDADKTGEE---------VK---------------LRRG----LEPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CY-P---HFMRKQNQ--------------------------------TSRRTYYT--------------------------------------------STSILGQIYDMVDKNADRLGYRPE?---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [620]
'gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae]'                                    M----QRATEK---------------PQLSEREHGRGSRKQRSRKGKKHHKRSSTLGPSSQTSSSTNKGSEDRSSSTATYQTGVSP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HRALTTSTSRQPQNSSRLQQQPA--QLLLAPWTFWDTVAVNLFNLPRE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IN-----TRILWQ-TFSSEGYV---------------------------------------------------------------------------------------SSIDLFEDSHGNRDS------RGKIRFK-----------------PPPKT-DFWRKGLYTIKLPNGRTSVINIGLDL------NREEPQIASPVRSGVSYPVEVK---------------LPI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSMDIGVLLSETTMLP------MR-----------------------SVGSGENES-SRLVLNLKQKALFVYFQLPIFTPGYKPTPASGMLQ---------EYRLKIPFVQLSWIFQVR----------DTVTGDISHFIVLDS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PP---LYHRRINNIDVTHSEENNTW-----RESETWYRQTYIVRNALELPY-LPIGLKKAK---AVIDIGRWNTFKITYPRDADFKG-------KLTLLCDILKDYNVTFQDTDRFTQWDTNVEMNPPIWKWIDLS-----DSQPPRK-ACSLEDLFD----------------------------------------------------------------------------------------------------------------HNFVHLPFQVRYQLEVCISNGYLSEFTM-----------------------------------TREFAVKLS-------EL---GETQAVKLLEHVSAK-----KQ---------VYYDPMKIFDLKF-IKGV----TQAKIPPY-------------------------CCYMHSARITPSTIYYN-------------------------TPTVDISNRVIRRFI-EHADRFLRVRFTDEKL------------------------------------------LGRINSTTD---------------STMDEIFTRIKRALTNGIVI-------GDRRYEFLAFGNS-----------------QFREHGAYFFA--P---------------------------------------------------------LPNLTAANIRAWMG---HFNS----IR--NVAKHAARLGQ-----CF-------------------STTRAI----------A---GCP--V-DVVK---IEDVER-----------------N-G---YNFSDGVGRISRFLAQMSMSELKI----------------------KTPTGE----------------PPSAFQFRL----GGCKGMLAV--SS-E-------------------------AQ-----RQEVHIR-KSQFKF---------------------AAI---------HNG-LEIVRW-----------SQFSMATLNRQLIIVLSTLG----------IPDQVFHAKLHTMLQGL---------DQALESDPQAIY----WLKKYVDPNQM---------------------TLTISQMVLDGFRRS--KEPFLTSVLTLWRAWHL-KYLKEKARIAVDQ--GACLLGCMDETG--LLQGYFHDK-VPGNDASVEEKTAALPEIFVQV----------------------------------S----RPEADKKSEVIEGVC-ILARNPSLHP--GDIRVVRAVNVPQ----------LRH--------------LQDVVVLPQTGD----RDIASMCSGGDLDGDDYIVIWDQDL--LPKD--WFREP-MKYTS---NK----AQ-----------DLDRDV------------------------TVNDITS----------------------------------------------------------------------------------------FFVT--YMKND-FLPRIAHAHLALA---DF-----------LEDGVNEEKCI---------------------------RLAQLHS----DAVDYNKTGIP---------AI---------------LTRN----LEPR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KW-P---HFMEK-FN--------------------------------KPKDRIYH--------------------------------------------SNKILGQLYDAVERIDF--VPS-------------------------------------LEMPFDK-----------------------------RLLNCEI----E---VPDDLLTFAKN-LKGQ------YDDAMRRIMAQHEI-------K-----TE-FEIWSTFVLG---------------HANTSKD---------YKFHEEIGA-------------ISATLRDTFKKQCYE---KVGGR------------------------NFDQLAPLALAMYRVTNEEMSDALNKYRAE---------------------------------------------------------------------------------------N-STTGNKFFHKPTPKIDQLPLI--SFPW----------------------------------------------------------------------I-------------------------------FPHILGKIALG------------HFE-------VPGGIPVV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DND-----------------------PFGL-FTDDLD-P-TSPLPCRCSIVPAASMPLSFSDNVESLEQL-LDFGLSTSGPHELASSTDAAL---------------------------SDVPIEADLSLLDFSDIPKYSQSPSCNGSIGGGCVIQSMDTTTPAMAVD------------------------------------------------------------------------------------------------------------------------------T-IQRSGSPSGGSTG--GGCVVQSADVSNSTFNEVVSEKWVEIVEEEDDLKPTALDKLN--ELLGF----   [1458]
'gi|71000487|ref|XP 754927.1| RNA-directed RNA polymerase Sad-1 [Aspergillus fumigatus Af293] >gi|66852564|gb|EAL92889.1| RNA-di'    M----T-----------------------------QGSRPRSTL----LRERKRSLQPSRQQVPS-------QAPSSGQHVPPVTP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QRS-------QWQQIPQVLQHPS--T-ILCPWRLWESVAVHVFNIPRE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AD-----TYCLWQ-AFSKEGHV---------------------------------------------------------------------------------------FSIDIFEDFHGNRES------RGKIRFKSADSPLHSINWPNPFSRPPPQK-DFWCHGTYPITLSDGKPTFVSITLDL------KRPDVQIQSPLRPNTMYPAEVK---------------LPI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASMDIGVPISETSMLP------MR-----------------------TVGNERNER-AFLVIDLKRRDLSVHFQLPSFKNKPKSASTGETYN---------QYRLSIPFVRLVKIYQTR----------DPKSGKVSHLTFLGS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PA---IYHQRIQETWVTFN-DDMSW-----RESDSWYRQTSVVHNPDELST-LPVSLNRSR---PVIDIGRWNAFRITYPEALSKKDE-----ERFELFCNILNDYNIAIENTTRFSVLDQTQERPPPIWRWIDFA-----DLQGSKKIVSSVEELGD----------------------------------------------------------------------------------------------------------------ETYVHLPFPVRYQLEVCLSHNYLSEFTM-----------------------------------SREFAVKLL-------NL---GESEAVKLLEHVAIK-----EE---------VYHDPMKIFDLKF-AKGS----TRAKIPSY-------------------------CCYMRSARITPTTIYYN-------------------------TPSVDISNRVIRYYI-EYADRFLRVRFTDEKL------------------------------------------LGRINSTID---------------NTMDEVFTRIKRALANGIVI-------GDRRYEFLAFGNS-----------------QFREHGAYFFA--P---------------------------------------------------------LPSLTAANIRAWMG---TFND----IR--NVAKHAARLGQ-----CF-------------------STTRAI----------A---GCP--V-QIRL---IDDVVR-----------------N-G---YTFSDGVGRISKFLAQMAASELKI----------------------RTPSGD----------------PPSAFQFRL----GGCKGMLTV--SP-E-------------------------AQ-----RQEVHIR-KSQYKF---------------------ASV---------HNG-LEIIRW-----------SQYSMATLNRQLIIVLSSLG----------IQDSVFHDKLRAMLQSL---------NESMESDSQALC----WLKKYVDPNQM---------------------TLVVSQMVLDGFRSS--REPFVTSIMRLWKAWHL-KYLKEKAKIVIEK--GANLLGCMDETG--ILRGY-SEW-IPAKGASDEEKLAALPEIFVQI----------------------------------H----HPDT-GKCEVIEGVC-ILARNPSLHP--GDIRVVRAVNVPQ----------LSH--------------LKDVVVFPQTGD----RDIPSTCSGGDLDGDDYLVIWDQDL--VPED--WFRKP-MKYTS---DK----AQ-----------DLDQDV------------------------TVNHITS----------------------------------------------------------------------------------------FFVL--YMKND-FLPRIAHAHLAWA---DR-----------LEDGVNEEKCI---------------------------RLAQLHS----DAVDYNKTGKP---------AN---------------MARS----LQPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VW-P---HFMEK-KH--------------------------------KPKEMIYK--------------------------------------------SNKILGQLYDAVERIDF--VPS-------------------------------------LEMPFDE-----------------------------RILTCSL----G---VSDDLVQFARD-LKAD------YDAAMHRIMAQHEI-------T-----TE-FEVWSTFVLS---------------HSNMSKD---------YKFHEELGL-------------ISSSLRDMYRKKCYE---KVGGR------------------------SFELLAPLAVAMYRVTHEEMTSALEKCRSK---------------------------------------------------------------------------------------N-HSDG-QLFHKPTPKIDQLPFI--SFPW----------------------------------------------------------------------I-------------------------------LYNILGKIALG------------HYE-----DSEPGSAPTVIA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PATASVDP--------LDPVPGQAVSVHKENSNRTEPTSDSLNGIHED-----------------------PFGL-FEGDQE-SRPSSRPSREAEVSATQ---NRRESIPSLDQL-LDFGLVE---LSLPISSDRLH---------------------------LSAQAPDGFNLLELND-------------------NTALDKPTEGRAEE------------------------------------------------------------------------------------------------------------------------------TDLEKQMSLVSGSTSITGGCI---------------------DIMEEDDVKPSALDMLY--QILDS----   [1440]
'gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGKTLQVSGFPAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VN-----VHHVKDLLEQIVG-L--------------------------------GKV----------------------------------------------------------------------------CAVK----------------LRPPKNISANSRSFAIVQFETEAHASLV---------------VNAARG--NAL-RSGSNYLKV------------------------RPAERDII----LK-----------------------------PRTALFNLED--------------------------------------------------------------------------------------------------------------------------ATLHFGCLLRERVLS--------V-----------------------LW----SGTGVSVEFGFAMKKIDFCLTYN-L-------------K---------KYKLELSYESIWEIQLYH----PPGS--QKK--F--LLIQVMA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---KIYEQNL-WHSGSMYDDPLFNYFRDDTDDQWTRTTDFT---------------------PLASIGQSYILCLELPAD-----------CYLPNIREYFVYYKNHNHDFHCMRGHSY----------------------------------------SSNSCFVPIVKSQ-------------------------------------------------------------------------------------------------YFTDVPYEILFKINNLVQNGILSG-PTL----------------------------------DDNFYSLVSPG-----YV---CIDHIKHALENMSYL-----KK---------TCLNPINWLSEKY-KEIQIS-RHMLTSPNIA-LDD----------DG--------LAYVYRVQITPAKVYFY-------------------------GPEINVSNRVVRNYS-ADLENFLRISFVDEDC------------------------------------------EKLRSTDLSPRSAP-----GNNAS--RTALYNRILSVLSNGITI-------GNKHFEFLAFSSS-----------------QLRDNSAWMFA--S---------------------------------------------------------RTGLSASDIREWMG---NFRN----IR--NVAKYAARLGQ-----SF-------------------SASTET----------L---KVH--KYEVQA---LPEV---T--N------------GTK---YVFSDGIGTISADFADEVSRKCKL-------------------A--R----F----------------TPSAFQIRY----GGYKGVVAI--DP-R---------------------------S----HWKLSLR-SSMSKF---------------------PSE---------NIT-LDVLAY-----------SKYQPCFLNRQLITLLSTLG----------VRDNIFELKQQAAVMQL---------NRLVTEPQAAID----AIELMPM-GEI---------------------TNVVKELLLCGYQPD--VEPYLSMILQTFRASKL-LELKTKSRIFIPE--GRAMMGCLDETR--TLKYG---------------------EVFIQA--S------------------------------------NSANESDKFVVTGKV-VVAKNPCLHP--GDIRILEAVYTPV----------LDH--------------MVNCVVFPQQGP----RPHPNECSGSDLDGDIYFVSWDPDL--IPT---RMVAP-MDYTP---AP----TE-----------TLDHDV------------------------VIEEVHE----------------------------------------------------------------------------------------YFAN--YIVNE-SLGIIANAHVVFA---DK-----------ESLKAESTQCI---------------------------KLAELFS----IAVDYPKTGVP---------AQ---------------IPSK----LHVR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMEK-LD--------------------------------RAT---YI--------------------------------------------SKGVIGKLYREIKKQSPH---I----------------GHF----TKDV--------ARRS--YDT-----------------------------DLIVDGY----------QDYITEAVW-FKGE------YDFKLGNLMEHYGI-------K-----SE-AEIISGCILK---------------MAKNFTK--SSD----ADAIR---L-------------AVKSLRKEARSWFSD---MS-------------------ADESGDVH--EASYAKASAWYHVTYHPEYYGCYNKI-------------------------------------------------------------------------------------------YE--------------RPHLI--SFPW----------------------------------------------------------------------C-------------------------------VYDKLLHIKQRKSLR--RRLLDLQN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMRRNNILG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1115]
'gi|39975737|ref|XP 369259.1| hypothetical protein MG06205.4 [Magnaporthe grisea 70-15]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVFLSGLPTEQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LT-----ARSLEQQLTPLILKL--------------------------------------------------------------------------------------------------------------------------------GIGKHDFGCEKAARSKFANLTFRHPEQARLFLRHYGEVPESSTNKISSLPQGQAQPSPFGRDR-------APRSTARLRLLGKPIWCRKSIRAVNPIT--LRGMDESHRRHQEKESKALTG--------HRDQDKHQHGVDFDV--------------------------------------------------------------------------------------------------------------------------MGVACGHYAFVS----------QQ-----------------------LAYFPEREWPWMCKASFTKLNLHVRRSDG-------------------------TIRMRIPLSTIHEIVWYT----HDDR--QGT-----LTLTLDS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VP---WFLTEECTLDDLMAR----------------------IAIGSGKIKENQQNRMQALDEQHAEIVGTCLTYHFNISS------------HSISRDIKMLERKSFTNITRYKLAIWNTP---------------------------HPTLGSFKDKALQLRQELKAATSAS-----------------------------------------------------------------------------------------------INSGKSLPHSHLFVLQALFYNGYLHPATV------------------------------------LEILHQLFRRFYEDRLSG--RTFIAPEAVKSLMDAECIPWPSPY----EDPEYFEVSSLMKWIYEKNEEFQGGFDLRTGQL--RQN----------SN--------LTHIYRVVVTPTRITLH-------------------------GPEIENKNRVLRKYP-KHQDCFVRVQFCDENT------------------------------------------QDIRFSPK----------------ISYDRVYSRFLDVLNRGIQI-------AGRVYNFLGFSHS-----------------SLRTHSAWFSA--PFFDQ-----------------------------------------------------GSQHTHASIIKSLG---EFSS----IQ--CPAKCAARIGQ-----AF-------------------SETPSV----------V---DLR--DHDVEVVTHFPDITNR----------------DGS---RVFSDGVGKISESMMHIIWENIPM-------------------------KKN----------------APTCFQVRW----GGAKGMLAL--DM-T-------------------------LK-----GTKVCFR-DSMTKF---------------------ESD---------DVHQLEICDS----------GSKPIPLVLNRQMIKILEDMG----------TDRSWFMRLQSYRLQEL---------RSITASAYNTWH----FLDAQNVGQAIKL-------------------GKFINFADKHGMDYR--TDDFMRSVVEAVVLREL-RLLKHKARIPVKY--GKTLFGIIDETG--YLREG---------------------EVVISFGFSQ------------------------------------TGEDQPTPPQDGQIVIVTRSPALHP--GDIQIAKQVVPPP-------SHPLSH--------------HINCIIFSQHGQ----RDLPSQLSGGDLDGDIYNVIWDGDA--MPK---ETFDP-ADYPR---VE----AQ-----------DIGRRV------------------------VSADMAQ----------------------------------------------------------------------------------------FFID--FMKTD-HLGVIATRHVILA---DQ-----------LDDGTLSQECR---------------------------TLAGLHS----TAVDFSKSGIP---------AE---------------LKAL----PRAN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFRP---DFLSPGPITNYHDKGKITLEEYTISEEAEEEEEEGDGPR-YGY---YR--------------------------------------------SEKVLGQLYREIDEEKIWNENI----------------RVA----VDHNK-----PSFWETFIDWA-----------------------------IKSAATV-----GAVSWPVRIDSARR-LKSA------YDDHVRGHMSKYSD-------HPVNPISE-REVFIGAILN---------------KTGVQTHRQRDAS---HKLRDEFER-------------TANHFARQMRMGNEG-------------------PDCVPLTGYMAELGPSAALDLCLACVCVASEQDVPLVASRLGI---------------------------------------------------------------------------------------SKSPSRRAAGRNGRKDGENSELQ--SFRL----------------------------------------------------------------------V-------------------------------AATQFLRELRVKERELGVGEAGGKGG-----GGFQLQIGPALQVGKVV-------NSSVWWLCKGMGIFGSHEFGGKRYPEDVGLKYSKAGELH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1338]
'gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG 06459 [Chaetomium globosum CBS 148.51]'                                    M----ADPMSG------NYQNLLL--------------------KGADNGRLQAQKQARPAT--------------------PASA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRFPNP------------------------R--------------------------------------------------------------------------------------HVERPSFVR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPGPAAGQSKPIPTQQA--AVVPPAWASKKSATMIIKPIPAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AS-----PWDIRE-FFEKFGNV---------------------------------------------------------------------------------------VWVEL----DGARVS----HRSAKIRFE-----------------PPPTDVSFFQQGKCKLSIGGSVS---W---ALIKFPRQSDQEPTMTTPG--GNACPTSMV---------------FGP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRLTFGLLIQPTTFMA------KK-----------------------EILKLDGNLELKFTADFRRQKLTVHFPISV--YG-E-------RQ---------YYRIEMKFGIIKSIYRMA----------------SVLVVHLAD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PP---LARKKQTGMDGAGWVDRLVW-----GEDELWYRAVDVGTNSQNPPT-KPVSLDEDP---GIIDFGRWTTYWVDL-DNKS--AQ-----EQWSVIEGHLRDWNIATKTEAIFTRIPST---KPELWDLLADPH-FDVSTAASPTWDNGLILLSA----------------------------------------------------------------------------------------------------------------MTHISLPYEVRYQLEVCISRGILSEYNI-----------------------------------RRDFLEKLFEM-SKPRDL---KPNRARLVLEYAADE-----GK---------PVYNPMELFEDRG-AMAYYP--TTLHIPDY-------------------------CALVRKVTVTPTRIFFS-------------------------TPTVETTNRVVRRYK-DVQDHFIRVQFTDELL------------------------------------------DGRIRAS-DV--------------DRDDELYARVCRVMTQGIRM-------GKWHWKFLAFGNS-----------------QIRENGAFFFCEPE---------------------------------------------------------DGTTTCHSIREWMG---NFDH----IS--SVAKLAARLGQ-----CF-------------------STTRLL----------N---CIS--APRIVK---IPDIES-----------------NDG---FCFTDGVGKISFPLASLVSEAWKI----------------------D----T----------------RPSAFQFRM----GGCKGVLVT--WP-D-------------------------AK-----GTEVHVR-PSQEKF---------------------SAE---------YNG-LEIIRC-----------SQFSCPTLNRQTILILSCLG----------VPDDVFIDMMAGQIASY---------DTAMTNQDRAIE----LLSKYVDGNMT---------------------TTTIATMILNGFMHT--REPFVRTLLQLWRSWSI-KGLKEKARLVVDQ--GAFLLGCVDETG--TLRGH-----SRATEGRNGITQNDLPQIFLQV----------------------------------P----DRKDRGAYKVVTGIC-IVGRNPSLHP--GDIRVVEAVDVPE----------LRH--------------LRDVVVFPLKGD----RDVPSMCSGGDLDGDDFFVIWDPKL--IPPE--WSHPP-MNYTA---PE----PL-----------NESQES------------------------IVNSLAF----------------------------------------------------------------------------------------FFVL--FMKND-RLPLIAHAHLATA---DY-----------EVTGAKHWKCL---------------------------QLASLHS----IAVDYVKTGIP---------AR---------------WNKK----LDPR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KY-P---HFMEK-AK--------------------------------AKS---YR--------------------------------------------STSVLGKLYDMIDKEVFDNRDN-------------------------------------YKLPFDD-----------------------------RILK-RF----E---LGHPLLKEARK-IKTQ------YDISMRRIMGQLEI-------R-----TE-FEIWAAFVMS---------------KPRVGTD---------YKVQEKVGR-------------ESAGLKKQFRDLCLKVVEEHGFN----------------------------RQEFVAAMYKVTWEETRIALHEARQP---------------------------------------------------------------------------------------HVLPDGTVGLRRVTAR--SMPLI--SFPW----------------------------------------------------------------------L-------------------------------FPDDMGKIA----------------L-----GT--ERLPNLME--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGIVPPSTNPMPKGPNMAQLETEPDLAG--MDYTKTSDGQFIHRGEILH-LFRHNDDGEDGFYYDD-GSDSPDPSGDSAS-DTASKQEQEVKKMADDFATLLDSDASLDAESPIQENADIMQVLSSPKLSDHAAESALLDLLSSDMDTNLDSTPCLTPVRIYAQQPDTVATTETVQSINRSVEEASVAVATDHKDKD-------GAARNPDAASVVSDSNTSSWNRATPPVSEPPAELPVDYIPVSSHRARRGGQRLNQVEL-----------------------------------------WADGAGSGLGKGIVGAPGYALNEREAAAALPAYVDPFAPAKALAVEEVVGGVPDEE-VEYQEDVIEVEAETTLEK-AARFA---------   [1572]
'gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa] >gi|85074682|ref|XP 964248.1| hypothetical protein'    --------MSGIPNWVEQAQHAILVSPDRSPKDQDARPRHPSRRRSSQQGHRENTPTPRPPSRP---------------TSRPSSS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPKPPP------------------------R--------------------------------------------------------------------------------------AFRQFS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RGKPASFASLPSLT-QP--VFISREWKCARTAAIRVKDVPPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AK-----LQDLHD-LFSEYGHI---------------------------------------------------------------------------------------SYIEL----DEDRQDVSDRGRRALIRFE-----------------PPPLSTDFLCRGICRLRIGLVDH---WLPLETVDPKREDRKERTIKTQL--GNTCPQTLY---------------VFP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STLSFGLLVQPAVFMK------KQ-----------------------SVQTLSSDSFLRLEFDFKRMRLVIKFSLHY--QR-ELSGFRRQNE---------HYKLHIKFGVIKELCRTM----------VGEEHRQALVITLRD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PP---VAYRKRDVSKTFG-EDRLTW-----SENDLWERVVDI-SPGLDVSK-NPVSLAENH---QYIDLGRWLTYWIEL-DQQS--TR------VWDQVQQYLLDWNLRTKLTVFPEPLPNQ---KPKVWDFLDDRYGHDIQQVSSRSWSNDFSLLAA----------------------------------------------------------------------------------------------------------------PPRISLPFDVRYQLEVCISQGIINEHNI-----------------------------------DRPFLEKLMEFCDNDNSF---GKDRARLILEYVADEY---AGK---------RIFDPMELFKDHA-ALAYFP--TSFMIPNH-------------------------CAWVRRVTITPTRIYFS-------------------------TPCVEPTNRVIRQWK-HAQDYFIRIQFTDEVL------------------------------------------EGRIKSG-EA--------------EL--PLFLRVYRVLEKGVAM-------GPWHWKFLAFGNS-----------------QIREAGAFMFC--E---------------------------------------------------------QSNLTGDMMRAWMG---RFSH----IK--VIAKYAARLGQ-----CF-------------------STTRLV----------P---GIP--APRIVT---IPDVE------------------KDG---FCFTDGVGKISPLLAKIVAHDWSI----------------------D----P----------------PPSAYQFRM----GGCKGVLVT--WP-D-------------------------VK-----GMEVHIR-KSQEKF---------------------VAE---------FNG-LEVVRC-----------SQFSTATLNRQIIAVLSSLG----------VPDQVFVDMMEQQLSDF---------NAAMEDKQKATA----ILKTFIDENHM---------------------TPIIAEMLAYGFMGS--QEPFVRTLLQLWRSWSI-KTLKEKARLNVEK--SAFVLGCVDETG--TLKGH-----MKVIEDWKDVSSEKLPQIFLQI----------------------------------P----DDVN-GGYRVITGTC-VVGRNPSLHP--GDIRVVEAVDVPA----------LRH--------------LRDVVVFPLTGD----RDVPSMCSGGDLDGDDFFVIWDPLL--IPKE--RSHPP-MISEP---IA----GK-----------ELATEP------------------------TVNNLIT----------------------------------------------------------------------------------------FFVL--YMKYN-NLPLIAHAHLATA---DA-----------EVEGVKSPKCL---------------------------ELASLHS----MAVDYVKTGVA---------AE---------------FPRR----LDPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TW-P---HFMEK-NR---------------------------------HT---YH--------------------------------------------SVTALGKLYDMVKRETFDMKEN-------------------------------------YQLPFDN-----------------------------RILK-HT----KCRALRDGTLAKARR-IKSQ------YDTAMRRVMCQLEI-------A-----TE-FEVWTAFVMS---------------KPRVGSD---------YKLQDNVGR-------------ESSALKQHFKDQCKK---EAGGD----------------------------LLSFVSAMYRVTYEEVRIALFEAKQP---------------------------------------------------------------------------------------HVRPDGRLGTRKITPK--TMPLV--SFPW----------------------------------------------------------------------L-------------------------------FWDKLGELA----------------R-----AG--AVLQRRLD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DGSEDMDL--------LSDVPLVSQRRRGKHNASGSSDFMDEHGDPLSYTRTSDGKIIHYGQILN-LFSHDD--EDGDERND-ARDRNSSSEDSTHVSNSSKSSSNLSPVAEEDLLTFESPPASPGVTPASPQVDLL----GPTLTLTKAELAI--GLAGPVATTYTPPPTDEETVICHGHSNRASHLSASSS---SLDPQPLIEETSGENEDLLLDIYSASPPRADGARLASAVGSDVPVKGGPP-------------PVWMEQVIRMGHRIPTPPLDSIAIPNVIGVPQFESPLTGTVVASAIQDPFVSPSPAVATPATSGSGGGWGGGGGGGGG-------------GYIGIGGPINKELVMGLDGGIKEEDREETDEEAEEVELEIDEDPIAVRYAQMAAL----   [1638]
'gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila SB210]'                             M----SESLQQQLDKEININQTLNFFQTQL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LFILLINKCYINGKITSKNFTTS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LC-----FASIQKYLQEQQHRF--------------------------------KSIKCVSIYTPKKEQQQIGLDTIDDVKEKIKEIQKSIDHNYLNIPQHLKEERYREGQQSLDNDDDSNLLGSEYQFLKNFITKENDDIHLKEEMASFNKIESFCQNVLKNSKNESKINTVNQQKDQYARINSWIIILSGTEQDLEVLNDSKIDVKTKHEKYYFFLKTKHNDNEKKNYLKICTDELSNYAKEQMNFVNIKLLQ-----------------------------VSLGIFELYG--------------------------------------------------------------------------------------------------------------------------GALYYNCQFQFEENI-----------------------------------DYVNTISIYMQNDESEQSVSIVLAYND--------------Y---------QLKIEFPYLYCNEIRFDQ----RGKN--M-------YYFQLVV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PP---KYFVRENSANIQENLD---------QKKNTWIRVDNFFA-HDISNEL------------KRIEFVNNTVICIEIENETVNTFQT----ILKNSFSNVFKDTD-------------------------------------------PIPISNVSQHFPQEPENDLDQQWE------------------------------------------------------------------------------------------------RLLNRYSFNLSYSILTLISHNKLSVVKL------------------------------------REFLDYIDL------QI---RDGKSEYILEKGIQYYYNQKKE---------INRLNFTAFQILF-QDVQRQENYFKIQEIRA-KRD----------VK--------VIATRRVSITPSGLIYN-------------------------LKELELSNRVLRIFQ-DSTDSFIRGTFQDDSL------------------------------------------EN----------------------AKHMKYVSRYFRQKLKSFKV-------LNWEFINFGWSAS-----------------QLRNSSSWFFH--E---------------------------------------------------------TEVLKKQDVITRIG---DFSG----IN--PPAKKSARIGQ-----CF-------------------SSSTPY----------I---LKE--RPNIEF---IDDITTPSAVQEVDANGNICYFRQKK---KVFTDGIGTISQDLIRKISDHLNA---------------------------F----------------FMCAIQVRY----GGAKGVLTI--DY-K-------------------------SDK----KNTIQLR-ESMIKY--------KITD---------EQD---------ELI-IDILDR-----------NKYRFGYLNRQVIILLRSLG----------IENEQFIQAQQEYIEEL---------NKSALKDASIFT----LFNTDYSKDGTR----------------LFPITHLLRSMQTSRIDMA--QDIFCKGVIHTLKKRGF-YILRKKSNIFLKK--SARLMGVIDEYN--VLEQD---------------------EVFAYI--SQ----------------DS---------------------EKSFFQVEGDV-IVVKNPCLHP--GDIRKLKAVTLET----------ISQRLGE--GKINPFKKLRNILIFPQKGK----EPITSQIAGSDLDGDCYFICWDQRF--IPL---EQKEP-FNYDEDDNSQ----KK-----------QISQEQYDIEISKKPNTQFKTKNPVREVIDDNEQMLD----------------------------------------------------------------------------------------FFID--FINNE-NLGKIDNSHLVFA---DK-----------SPLYAEDPKCL---------------------------KLASLHA----QAVDYAKTGIS---------PQ---------------LPKN----LAIK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMEK-DD--------------------------------KPS---YQ--------------------------------------------SQSILGILYRQVKDQYEKHCKN----------------DIE----GDRSQ-----TFIDNNLIFNP-----------------------------PTFVNEIVDEQENKTYLEQEIDFAIE-ANNQ------WNIEINNLKQFFGA-------Q-----NE-FEIYTGNFSK---------------LIKVERKKKMSA----EIVQQRILS-------------TLLAIKNRFELLFFK--------------NLDEDRDRFYDETNRKKYYSKKCKIRATLWYIICYLRKPEHIVQYAVN---------------------------------------------------------------------------------------FE----------------KDSLLGQTFTFLSQQKYFGE----------------------------------TIIRGNRNPKTIQFFNENNDYVGLSWFI-------------------------------ISNVLLEIKKDNDNYKMNEQKQQKSE-----QQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKEFEDYKKKFYQNDLNGYHSDEYL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1439]
'gi|50924896|ref|XP 472792.1| OSJNBb0048E02.13 [Oryza sativa (japonica cultivar-group)] >gi|32492169|emb|CAE04828.1| OSJNBb0048E'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPTAAAAATASLRVSNIPPS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AV-----AAELLAFFDSAVAVA--------------------------------GGA----------------------------------------------------------------------------FACE----------------IAA-AHRGWLSRGHGTVQFGSAAAAAAA---------------AGLASS--GRLPRFLGALLSV------------------------SPSPVDLL----PR-----------------------------ASDLSLRAAG--------------------------------------------------------------------------------------------------------------------------AGLVVGDRVAERVFE--------A-----------------------AD----AWDGVRAEVIPGKRRVDLYLEHD-S-------------Q---------RYKLEVLFEDMKDCLGCT----LDG------MGA--ILLQLNY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---RIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFT---------------------PNYSFGRCSTLVLKLGKS-----------ALVSDILKSLPFSGN-LGELTMNSMDGV----------------------------------------GASSNVVPLVHCP-------------------------------------------------------------------------------------------------RDYSVPYEVLFRLNSLMHMGKIVA-KHV----------------------------------NADLFKALQE-------L---PVDVSRRIFEKMHKL-----ES---------TCYGPLQFIQQEA-YSMKRSHNVLLSNEGEG-EGE----------RK--------LMKCYRVNITPSKIFCF-------------------------GPEEEVTNYVVKHHS-AYASDFVRVTFVDEDW------------------------------------------SKLSSNAISARIEQ-----GFFSKPFKTGLYYRILSILKKGFSI-------GPKNFEFLAFSAS-----------------QLRGNSVWMFA--S---------------------------------------------------------NASLNAGGIRRWMG---HFEN----IR--SVSKCAARMGQ-----LF-------------------SSSRQT----------F---EVL--RWDVEV---IPDI--EITTD------------GSK---YIFSDGIGKISLRFAKRVAHHVGL-------------------D-PT----N----------------LPSAFQIRY----GGYKGVIAI--DP-M---------------------------S----SIDLSLR-PSMKKF---------------------ESE---------SRM-LNITSW-----------SKSQPCYVNREIISLLSTLG----------IRDEIFVAMQQDEMRET---------EEMLTNKEVALS----VLGKLGG-SET---------------------KT-AVKMLLQGYEPS--SEPYLSMILKAHQENRL-TDIRTRCKIHVPK--GRVLIGCLDETG--VLEYG---------------------QVYIRI--TK----------------NSKEQKD-----SNQSYFYND--DGKTATVVGKV-AITKNPCLHP--GDIRVLEAIYDPD----------L--------------VGMVDCLVFPQRGE----RPHPNECSGGDLDGDLYFITWDDKL--IPE---KVDTP-MDYTA---TR----PR-----------IMDHVV------------------------TLEEIQK----------------------------------------------------------------------------------------HFVD--YMIND-SLGAISTAHLIHA---DR-----------SPLKARSPECL---------------------------QLATLHS----MAVDFAKTGAP---------AE---------------MPRT----LRPR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMER-WE--------------------------------KPM---YI--------------------------------------------SNGVLGKLYRSAMGHMEKSGDS----------------GAL----SSSS--------AQPSPTYDP-----------------------------DLEVPGS----------DEFLQAAEE-YYEL------YEEKLTTLMNYYRA-------E-----LE-DEILTGNIRN---------------KMLYLKRDNKRY----FEMKDRIVA-------------AVDALHREARGWLLS---SR-------------------K-EED-------ASRMASAWYRVTYHPDR--------------------------------------------------------------------------------------------------RRG-------------K-RFW--SFPW----------------------------------------------------------------------I-------------------------------ACDNLLAIKASSQLRRRRQKDDDSTA-----VV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QMDCSA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1136]
'gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGKTLQVSGFPST----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VN-----ADHVKDLLEQIVG-T--------------------------------GNV----------------------------------------------------------------------------FAVK----------------LRPPKNISANSRSFAIVQFQSEAHASLV---------------LNAAQR--NAL-RSGSHYLKA------------------------RYAERDIV----PR-----------------------------PRTTIFNLQG--------------------------------------------------------------------------------------------------------------------------AKLHFGCLLKERVLS--------V-----------------------LW----SGTDVSVEFGFAMKRIDFCLIYN-S-------------K---------KYKLELSYESIWEIQLHR----PPGL--QKK--F--LLIQVQA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---KIYEQNI-RLSGSMYDDPLFNYFRDDTDDQWTRTTDFT---------------------PSASIGQSYILSLELPHI-----------CYLPNIREYFVYYEVHNDIFNLQPGYSY----------------------------------------SSNTCFVPVVKSH-------------------------------------------------------------------------------------------------YFTDVPYEILFKINHLVQNGTLSG-PTL----------------------------------DDNFYRLVSPG-----YE---RIDRIKRALEKMSYL-----KK---------TCLNPTNWLSEQY-KKMRRS-R-VLTSPNIT-LDD----------DG--------LVYVYRVQITPAKVYFY-------------------------GPEINVSNRVVRNYA-ADLDNFLRISFVDEDC------------------------------------------EKLRSTDLSQRSAP-----GNNTR--RTALYNRVLSVLSNGITI-------GDKHFDFLAFSSS-----------------QLRDNSAWMFA--S---------------------------------------------------------RPGLSASDIREWMG---NFRN----IR--NVAKYAARLGQ-----SF-------------------SSSTET----------L---KVH--KYEVKE---APDV---T--N------------GTE---YVFSDGIGTISADFADEVSKKCNL-------------------T--R----F----------------TPSAFQIRY----GGYKGVVAI--DP-T---------------------------S----QWKLSLR-KSMSKF---------------------QSD---------NIT-LDVLAY-----------SKYQPCFLNRQLITLLSTLG----------VIDSIFELKQQEAVQQL---------NRMVAEPQAAID----AIELMPM-GEI---------------------TNIVKELLLCGYRPD--VEPYVSMLLQTFRASKL-LELKTRSRIFVPK--GRAMMGCLDETR--TLKYG---------------------QVFIQA--S------------------------------------NSADDRGKSVVTGKV-IVAKNPCIHP--GDIRILQAVHSPL----------LGH--------------MVNCVVFPQLGP----RPHPNECSGSDLDGDIYFVSWDPDL--IPT---RMVAP-MDYTP---AP----TE-----------TLDHDV------------------------MIEEVHE----------------------------------------------------------------------------------------YFTN--YIVNE-SLGIIANAHVVFA---DR-----------QSLKAESTQCI---------------------------KLAELFS----IAVDYPKTGVP---------AQ---------------IPHE----LHVK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMEK-LD--------------------------------RAT---YV--------------------------------------------SEGVIGKLYREIKKQNPH---I----------------RHF----TKDV--------ATLS--YDT-----------------------------DLIVDGY----------QDYITEAVW-FKEE------YDFKLGNLMEHYGI-------N-----SE-AEIISGCILK---------------MAKNFTK--KSD----ADAIR---L-------------AVKSLRKEARSWFSE---MG-------------------SDESGDGH--KALVAKASAWYHVTYHPQYWGCYNEG-------------------------------------------------------------------------------------------YDH-------------RPHLI--SFPW----------------------------------------------------------------------C-------------------------------VYDKLILIKQKKNIA--RKMLDLQN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RMRRNTILG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1115]
'gi|34913398|ref|NP 918046.1| putative RNA-directed RNA polymerase [Oryza sativa (japonica cultivar-group)] >gi|21328146|dbj|BAC'    ------------------------------MRSPRGGAAAQPSGRRG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DTTAAAAGDLVTTQVSLGGFDAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VA-----AGDLADFLEHEVGLV--------------------------------WRCR-------------------------------------------------------VKTSWTPPDSYPDFALPTAPASAS----------------AAAAPPRYDRVPPHAFVHFARPEGARRA---------------ADLAGE--TRL-ILRGKPLRV------------------------ASAPDSSLRVS-RR-----------------------------SSIAPFRFPD--------------------------------------------------------------------------------------------------------------------------VRLEVGALPSPGAFLA------AW-----------------------RG----PDAGLDLSVDPFDGCCRLVFTRDTAFTFPGFREVAAIRC---------DVKLEFPVRDVLEVRLYR----L--D--C----S--LLLRLAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---LVHYRTADDDFHEPVPFDLL-----DDDDPWIRTTDIT---------------------PSGAIGRCGVYRISF-SA-----------RFWPKMDRALDYMRERRVAIVDCGGGWGP-----------------------------RRGLTVRDELEFGEPMQDVFFCL------------------------------------------------------------------------------------------------QHAEGLKFPLLFMVNALVHKGIINQ-HQL----------------------------------TPEFFSLLGR-------S---EENVNVAALRDFWGD-----KF---------PVFDACGRLKKAL-NRVARN----PKLLCS--KVG----------DD--------HAEVRRLVITPTRAYCL-------------------------PPEVERSNRVLRHYH-EVADRFLRVTFMDEGM------------------------------------------QVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHM-------CGRKYSFLAFSSN-----------------QLRDKSAWFFA--E---------------------------------------------------------DRKTTVEAIRKWMG---RFTS-----K--NVAKHAARMGQ-----CF-------------------SSTYAT----------V---TMR--PDEVDE---SFDD-----VV------------HNE---YIFSDGIGKITPDLALEVAERLQL---------------------TD----N----------------PPSAYQIRF----AGFKGVIAVWQGH-G---------------------------D----GTRLFLR-PSMRKF---------------------ESN---------HLV-LEVVSW-----------TKFQPGFLNRQIIILLSSLN----------VPDSIFWQMQETMLSNL---------NNILSDRDVAFE----VLTTSC--ADD---------------------GNTAALMLSAGFEPR--TEPHLKAMLLAIRSAQL-QDLLEKARIFVPK--GRWLMGCLDELG--VLEQG---------------------QCFIRA--TV----------------PSLNSYFV----KHGSRFSST--DKNTEVILGTV-VIAKNPCLHP--GDVRILEAVDVPE----------LHH--------------LVDCLVFPQKGE----RPHANEASGSDLDGDLYFVTWDEKL--IPPGK-KSWNP-MDYSP---PE----AK-----------QLPRQV------------------------SQHDIID----------------------------------------------------------------------------------------FFLK--NMISE-NLGRICNAHVVHA---DL-----------SEYGAMDEKCI---------------------------HLAELAA----TAVDFPKTGKL---------AI---------------MPPH----LKPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VY-P---DFMGK-ED--------------------------------GQS---YK--------------------------------------------SEKILGRLYRSIQEASNGD--V----------------VSQ----E-VC--------TPNDLPYDI-----------------------------DLEVPGA----------SDFLASAWQ-CKCS------YDAQLSALLSQYRV-------R-----TE-AELVTGHITF---------------LVKNSSK---KQ----GDIKDRLKT-------------AYSALRKEFKSTFES---IA---------------SDQCEIGDDEKN--LLYEMKASAWYQVTYHPKWVEKSRGILG---------------------------------------------------------------------------------------PDGEE-------------IPASL--SFAW----------------------------------------------------------------------I-------------------------------PVDYLARIKLRCHGKVRVEGQKPVER-----LA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AYISERI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1218]
'gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGVEKRVT-ATVRVSNIPQT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AI-----AKQLFDFFESSIG-K--------------------------------GSV----------------------------------------------------------------------------FACD----------------IFS-EHKNWKSRGHGRVQFETSQSKLQS---------------LSLSEQ--GKL-VFKGHQLIL------------------------TSSFDDII----AR-----------------------------PIELNYRFQK--------------------------------------------------------------------------------------------------------------------------GILHTGILLENDYME--------V-----------------------LE----TWENVKTLIMPERKSLEFWVSHAKG-------------E---------CYRLEVQFGDIIETCECS----LEDE--KT---A--LLLKLKH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---KLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFS---------------------AMKSIGCSSSPCWEIEDG-----------LLSSDLLSGLPYCNNDVMDLVLDEVGDI----------------------------------------YSASELVPLASFP-------------------------------------------------------------------------------------------------SDLKLPYEILFQLNSLIHTHKISL-GAV----------------------------------KTDLIEVLSK-------L---ELDTAMMILQKMHKL-----QS---------TCFEPVPFIKTRL-HVLGKNSKNQPSSSYSR-LVN----------QN--------MMSVHRVLVTPSKVYCL-------------------------GPELETSNYIVKNFA-LHASDFLRVTFVEEDW------------------------------------------GKLSPNAISMSVEQ-----GIFAKPYRTKIYHRILSILRDGLVI-------GSKRFLFLAFSAS-----------------QLRSNSVWMFA--S---------------------------------------------------------NEHVKAEDIREWMG---CFNK----IR--SVSKCAARMGQ-----LF-------------------STSFQT----------M---EVQ--SPHVEI---LPDI--EVTSD------------GVS---YCFSDGIGKISQAFASQVAQKCGL----------------------S----Y----------------TPSAFQIRY----GGYKGVIAV--DR-N---------------------------S----FRKLSLR-GSMLKF---------------------ESK---------NRM-LNITKW-----------SDAMPCYLNREIVILLSTLG----------VEDKVFEDLLDNHLHLL---------GKMLTTNEAALD----VLESIGG-GDV---------------------KKILMRMLHQGYAPN--LEPYLSMMLQSHFENQL-SDLRSRCRIFIHK--GRVLVGCLDETG--ILNYG---------------------QVYARI--TM----------------TKAELQS-----AQQSFFQKV--DETTAVVRGNV-VVTKNPCLHP--GDVRVLEAVYEVA----------LEE------------KAWVDCIIFPQKGE----RPHPNECSGGDLDGDLYFISWDENL--IPR---QTVTP-MDYTG---RR----TR-----------IMDHEV------------------------TLQEIQR----------------------------------------------------------------------------------------FFVD--YMISD-TLGAISTAHLVHA---DR-----------EPDKALNPKCL---------------------------QLATLHS----MAVDFAKTGAA---------AE---------------MPRF----LKPR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EF-P---DFLER-WD--------------------------------KPM---YI--------------------------------------------SEGVLGKLYRAIVNSSVRSNSD----------------DLG----SVRA--------IQDA--YDH-----------------------------ALLFDGY----------EAFIETAKN-HKET------YLDRMNSLLNYYGA-------E-----KE-VEILTGNLRQ---------------KSVYLQRDNRRY----FELKDRILV-------------SAKSLQKEVKGWFTG---CC-------------------K-EDE-------HKKLASAWYHVTYHPSY--------------------------------------------------------------------------------------------------CEG-------------SANCL--GFPW----------------------------------------------------------------------V-------------------------------VGDILLDIKLHNT--RK---------------I---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1120]
'gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LS-----AEAVKKFLENHTG-N--------------------------------GTV----------------------------------------------------------------------------YALE----------------VKQ-S--KGGRRAFAKVQFANNKSAEFI---------------IDLA-S--KGL-YYGPSYLKA------------------------WEMKTDIV-----Q-----------------------------PRTYVEHMDG--------------------------------------------------------------------------------------------------------------------------VTLNFGCQISDKKFA--------V-----------------------LG----SK-DVSIKFGIGLKKIYFFLSHA-S-------------A---------DYKLQLSYENIWQVVLHR----PYGQ--NAQ--F--LLLQLFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---RIYKR---------LEDSCYSFFKETPDDQWVRTTDFT----------------------PSWIGLSSSLCLEFRNG-----------VQLPNFSESFFYYKESMNQFILQTGFTFS-----------------------------F---------SQKLALVPIVHLP-------------------------------------------------------------------------------------------------EGIELPYKILFKISSLIQHGCFPG-LAL----------------------------------NFNFFQLVDPR-----RR---NIACIEHALEKLYYL-----KE---------CCYDPVRWLTEQY-DEYLKG-RQLPKSPPIT-L-D----------DG--------LVYVRRVVVTPCKVYFC-------------------------GPEVNVSNRVLRNYS-EDINNFLRVSFVDEEW------------------------------------------EKIHSTDLLPRAST-----GNGT---RTDIYERILSTLRNGFII-------GDKRFEFLAFSSS-----------------QLRDNSVWMFA--S---------------------------------------------------------RPGLTANDIRTWMG---DFRQ----IR--NVAKYAARLGQ-----SF-------------------GSSRET----------L---SVG--RHEVEV---IPDVACSL--H------------GTN---YIFSDGIGKISADFAHRVTIKCGL----------------------Q----Y----------------TPSSFQIRY----GGYKGVVAV--DP-Y---------------------------S----SMKLSLR-KSMLKY---------------------ESN---------NIK-LDVLGW-----------SKYQPCYLNRQLVTLLSTLG----------VIDDVLEQKQNEAVDQL---------DAILHDSLKAQE----ALELMSP-GEN---------------------TNILKEMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTRTRIFIPN--GRTMMGCLDESR--TLEYG---------------------QVFVQF--S-----------------GAGRRQFF----EESHPFNDSGSANCDFILKGNV-VVAKNPCLHP--GDIRVLRAVDVPA----------LHH--------------MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDPDL--IPP---RQVQS-MDYTP---AP----TT-----------QLDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFTN--YIIND-SLGIIANAHVVFA---DR-----------EPDMAMSDPCK---------------------------QLAQLFS----IAVDFPKTGVP---------AE---------------IPSQ----LRPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMEK-PD--------------------------------KPT---YP--------------------------------------------SEKVIGKLFQKVKNKTPQASSI----------------ATF----TRDV--------ARKS--YDS-----------------------------DMIVDGF----------EDYIDEAFY-YKSE------YDNKLGNLMDYYGI-------K-----TE-AEILSGGIMK---------------ASKTFDR--RKD----AEAIG---V-------------AVRCLRKEARAWFKR---RS-------------------DIDD--------MLAKASAWYHVTYHHTYWGLYNEG-------------------------------------------------------------------------------------------LK--------------RDHFI--SFPW----------------------------------------------------------------------C-------------------------------VYDQLIQIKKAKARK--RPVPHLSSL-----GS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLSRKLVIW-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1116]
'gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVFLHHVPAD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LN-----RHGFKRELQPFMKTL----------------------------------------------------------------------------------------------------------------------------------RIQDFICEKPRKKRFGTITFLHVDDAERFLQAHGEKPNP-----------------------------LGGFKSNLKLMGVSVCCKSSRYPPKPFA-------LRTLEHEAQERAKG----------HRERPEESVVFGM----------------------------------------------------------------------------------------------------------------------------QQYSCGRCDFVG----------EQ-----------------------LTYNPELQWSARGTIKFKTRSMIVHVIP--------------------------DCRIRIPLSTIVSLIYST----------DGT-----LTVTLSD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VP---FFFKVIGTSYNSLGI-------------------------------ESSRVRLSNLGNGHDQIVGQCLVYQFKVSV------------VHFRANIEKLKDWEIT-IYRYNLTTARPL----------------------------LCSQAVSVEFHKLLSELAECT----------------------------------------------------------------------------------------------------RNRSVPFGILFQLQALAQNAYLHPTTS------------------------------------RKLAEGLRKRFAEDEAAG--RDPITVDGMRKLFNM--IGWPFPG----DDPRVYEVDFLVATLEANHREIQDGFAYREGLHENTVN--------------------MTKVHRVNVTPTRITLH-------------------------GPEMEPQNRILRKFP-NHHEYFIRVQFCDENG------------------------------------------EDLLFNAN----------------VDYKDIFGRFIDIMTRGIQI-------AGRTYNFLGFSHS-----------------SLRSRAVWFSS--PFVDDN----------------------------------------------------GHMQTYFSIVSAIG---KFSH----IT--SPARCAARIGQ-----AF-------------------TETPFM----------V---PLE--KHGVLVST-IPDLTSP----------------DGS---RVFSDGVGAISREVVASIWADIPL-------------------------KRG----------------NPTCFQIRL----GGAKGMLAA--DS-R-------------------------LR-----TAVIQIR-PSMIKF---------------------DSE---------DMKNLEICNM----------ASRPYPMVLNRQVIKILEDMG----------ASKDWFFQMQNEELTRL---------QSITVSTDKTAR----FLKDKSVAECIGL-------------------YRLYRQCYWTRLNYK--KDGFLRAIVEAVVLREL-RLLKHKARIPVKK--GMTLYGVIDETG--FLQEG---------------------EVYVTF--DR------------------------------------MEGRYAAPPGPGHI-LVTRSPALHC--GDIQRAQNVIPPE-------DHPLRY--------------HRNCIVFSQKGS----RDLPSKLSGGDLDGDLYHVIWDPEL--ESV---ETFAP-ADYPR---PT----SI-----------DIGRDV------------------------RVDDMAA----------------------------------------------------------------------------------------FFVE--FMRSD-ILGMIAIRHMVMA---DQ-----------AASGTRDTSCR---------------------------LLAGLHS----KAVDFSKTGIP---------VN---------------MEDM----PRVN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RYRP---DFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDDADVEEPYRY---YK--------------------------------------------SEKILGKLYRAIDEQSIWRKHV----------------LSE----SETDE-----EFFWNSVIDDC-----------------------------LRRCKSL-----PRTPKEEHLDEAKR-IRAA------YDDAIISAMDTYSD-------HPTKPISE-LEVVIGSIIN---------------RRGVQTRRQRDRS---NKLHEEFDR-------------IATWITSIMRRQEIE-------------------------------DPDPNGLELSLACLYHGIQGSDS-----------------------------------------------------------------------------------------------------------GHRKEVYGELK--SFRV----------------------------------------------------------------------V-------------------------------AACALLAELDHRDKADPKNCFTM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1188]
'gi|8248473|gb|AAF74208.1| RNA-dependent RNA polymerase [Arabidopsis thaliana]'                                    ------------------------------MGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGNMKKSVVTQVSIGGFGES----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----AKQLTDYLEDEVGIV--------------------------------WRCR-------------------------------------------------------LKTSWTPPGSYPNFEI----ADTS----------------NIPSIDEYKKVEPHAFVHFAVFESAGRA---------------MDAAGQ--CNL-ILDGQPLKV------------------------SLGPKNPYSLNQRR-----------------------------RTTVPYKLAG--------------------------------------------------------------------------------------------------------------------------ITLEIGTLVSRDDFFV------SW-----------------------RA------EGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVINC---------DYKLELLVRDIQTVRQYK----TLHG--F----V--LILQLAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SP---RVWYRTADDDIYDTVPGDLL-----DDDDPWIRTTDFT---------------------QVGAIGRCHSYRVLI-SP-----------RYENKLRTALDYFRMRRVQ--EERVRWPP-----------------------------R----IRNEPCFGEPVSDHFFCI------------------------------------------------------------------------------------------------HHKEGISFEIMFLVNSVLHRGVFNQ-FQL----------------------------------TERFFDLLRN-------Q---PKDVNIASLKHLCTY-----KR---------PVFDAYKRLKLVQ-EWIQKN----PKLLGSH-EQS----------ED--------ISEIRRLVITPTRAYCL-------------------------PPEVELSNRVLRRYK-AVAERFLRVTFMDESM------------------------------------------QTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKL-------CGRKYSFLAFSAN-----------------QLRDRSAWFFA--E---------------------------------------------------------DGKTRVSDIKTWMG---KFKD-----K--NVAKCAARMGL-----CF-------------------SSTYAT----------V---DVM--PHEVDT---EVPD-----IE------------RNG---YVFSDGIGTITPDLAGEVMEKLKL-------------------D-VH----Y----------------SPCAYQIRY----AGFKGVVARWPSK-S---------------------------D----GIRLALR-DSMKKI---------------------FSK---------HTI-LEICSW-----------TRFQPGFLNRQIITLLSVLG----------VPVEIFWDMQESMLYKL---------DRILVDTDVAFE----VLTASC--AEQ---------------------GNTAAIMLSAGFKPK--TEPHLRGMLSSVRIAQL-WGLREKSRIFVTS--GRWLMGCLDEAG--ILEHG---------------------QCFIQV--SK----------------PSIENCFS----KHGSRFKET--KKDLEVVKGYV-AIAKNPCLHP--GDVRILEAVDVPQ----------LHH--------------MYDCLIFPQKGD----RPHTNEASGSDLDGDLYFVAWDQKL--IPPNR-KSYPA-MHYDA---AE----EK-----------SLGRAV------------------------NHQDIID----------------------------------------------------------------------------------------FFAR--NLANE-QLGTICNAHVVHA---DR-----------SEYGAMDEECL---------------------------LLAELAA----TAVDFPKTGKI---------VS---------------MPFH----LKPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LY-P---DFMGK-ED--------------------------------YQT---YK--------------------------------------------SNKILGRLYRPVKEVYDEDAEA----------------SSE----E-ST--------DPSAIPYDA-----------------------------VLEIPGF----------EDLIPEAWG-HKCS------YDGQLIGLLGQYKV-------Q-----KE-EEIVTGHIWS---------------MPKYTSK---KQ----GELKERLKH-------------SYNSLKKEFRKVFEE---TI---------------PDHENLSEEEKN--ILYEKKASAWYHVTYHPEWVKKSLELQD---------------------------------------------------------------------------------------PDESS-------------HAAML--SFAW----------------------------------------------------------------------I-------------------------------AADYLARIKIRSREMGSIDSAKPVDS-----LA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFLAQRL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1196]
'gi|15229153|ref|NP 190519.1| RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); nucleic acid binding [Arabidopsis thaliana] >gi|6899955|emb'    ------------------------------MGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGNMKKSVVTQVSIGGFGES----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----AKQLTDYLEDEVGIV--------------------------------WRCR-------------------------------------------------------LKTSWTPPGSYPNFEI----ADTS----------------NIPSIDEYKKVEPHAFVHFAVFESAGRA---------------MDAAGQ--CNL-ILDGQPLKV------------------------SLGPKNPYSLNQRR-----------------------------RTTVPYKLAG--------------------------------------------------------------------------------------------------------------------------ITLEIGTLVSRDDFFV------SW-----------------------RA------EGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVINC---------DYKLELLVRDIQTVRQYK----TLHG--F----V--LILQLAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SP---RVWYRTADDDIYDTVPGDLL-----DDDDPWIRTTDFT---------------------QVGAIGRCHSYRVLI-SP-----------RYENKLRTALDYFRMRRVQ--EERVRWPP-----------------------------R----IRNEPCFGEPVSDHFFCI------------------------------------------------------------------------------------------------HHKEGISFEIMFLVNSVLHRGVFNQ-FQL----------------------------------TERFFDLLRN-------Q---PKDVNIASLKHLCTY-----KR---------PVFDAYKRLKLVQ-EWIQKN----PKLLGSH-EQS----------ED--------ISEIRRLVITPTRAYCL-------------------------PPEVELSNRVLRRYK-AVAERFLRVTFMDESM------------------------------------------QTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKL-------CGRKYSFLAFSAN-----------------QLRDRSAWFFA--E---------------------------------------------------------DGKTRVSDIKTWMG---KFKD-----K--NVAKCAARMGL-----CF-------------------SSTYAT----------V---DVM--PHEVDT---EVPD-----IE------------RNG---YVFSDGIGTITPDLADEVMEKLKL-------------------D-VH----Y----------------SPCAYQIRY----AGFKGVVARWPSK-S---------------------------D----GIRLALR-DSMKKF---------------------FSK---------HTI-LEICSW-----------TRFQPGFLNRQIITLLSVLG----------VPDEIFWDMQESMLYKL---------NRILDDTDVAFE----VLTASC--AEQ---------------------GNTAAIMLSAGFKPK--TEPHLRGMLSSVRIAQL-WGLREKSRIFVTS--GRWLMGCLDEAG--ILEHG---------------------QCFIQV--SK----------------PSIENCFS----KHGSRFKET--KTDLEVVKGYV-AIAKNPCLHP--GDVRILEAVDVPQ----------LHH--------------MYDCLIFPQKGD----RPHTNEASGSDLDGDLYFVAWDQKL--IPPNR-KSYPA-MHYDA---AE----EK-----------SLGRAV------------------------NHQDIID----------------------------------------------------------------------------------------FFAR--NLANE-QLGTICNAHVVHA---DR-----------SEYGAMDEECL---------------------------LLAELAA----TAVDFPKTGKI---------VS---------------MPFH----LKPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LY-P---DFMGK-ED--------------------------------YQT---YK--------------------------------------------SNKILGRLYRRVKEVYDEDAEA----------------SSE----E-ST--------DPSAIPYDA-----------------------------VLEIPGF----------EDLIPEAWG-HKCL------YDGQLIGLLGQYKV-------Q-----KE-EEIVTGHIWS---------------MPKYTSK---KQ----GELKERLKH-------------SYNSLKKEFRKVFEE---TI---------------PDHENLSEEEKN--ILYEKKASAWYHVTYHPEWVKKSLELQD---------------------------------------------------------------------------------------PDESS-------------HAAML--SFAW----------------------------------------------------------------------I-------------------------------AADYLARIKIRSREMGSIDSAKPVDS-----LA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFLAQRL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1196]
'gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CIEHALEKLYNL-----KE---------CCYDPVRWLTKQY-DEYLKR-RQLPKSPSIT-L-D----------DG--------LMYVRRVLVTPCKVYFL-------------------------GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKIFSMDLLPRANR------NGI---RTDIYERILSTLQNGLVI-------GAKKFEFLAFSSS-----------------QLRDNSVWMFA--S---------------------------------------------------------RPGLTAYDIRTWMG---DFQQ----IR--NVAKYAARLGQ-----SF-------------------GSSRET----------L---SVG--RHEIKY---IPDV--EV--H------------GTN---YVFSDGIGKISADFAHRVAKKCGL----------------------Q----H----------------TPSAFQIRY----GGYKGVVAV--DP-Y---------------------------S----PMKLSLR-KSMLKY---------------------ESN---------NTK-LDVLGW-----------SKYQPCYLNRQLVTLMSTLG----------VKDEVFKRKQNEAVAQL---------DAILHDSLKAQE----ALDLMSP-GEN---------------------TNILKEMLNCGYLPD--AEPFLSMMLQTFRASKL-LDLRTRTRIFIPK--GRSMMGCLDESR--TLEYG---------------------QVFVQF--T-----------------GAGGRQFY----EESHHFNDSGSANYNFILKGNV-VVAKNPCLHP--GDIRVLKAVDVPA----------LHH--------------MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDPDL--IPP---RQVQP-MDYTP---AP----SI-----------QLDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFTN--YMVND-GLGVIANAHVVFA---DR-----------EPNMAMSDPCI---------------------------ELAQLFS----IAVDFPKTGVP---------AE---------------IPSQ----LRPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMEK-PD--------------------------------KTT---YH--------------------------------------------SEKVIGKLFREVKDKTTQASSI----------------TTF----TRDV--------ARRS--YDT-----------------------------DLEVDGF----------EDYIDEAFD-YKSE------YDKKLGNLMDYYGI-------K-----TE-AETLSGGIMK---------------ASKTFDR--RRD----AEAIG---V-------------AVRSLRKEARTWFKR---RS-------------------DIDD--------LLAKASAWYHVAYHPTYWGCYNEG-------------------------------------------------------------------------------------------LK--------------RDHFI--SFPW----------------------------------------------------------------------C-------------------------------VYD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [775]
'gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VS-----AEEVKKFLERLTG-S--------------------------------GTV----------------------------------------------------------------------------YAIK----------------VRQPK--KGGPRVYAIVQFTSERHTRLI---------------ITAA-A--ERL-YYGRSYLKA------------------------FEVEQDIV----PK-----------------------------PRASLHTISG--------------------------------------------------------------------------------------------------------------------------LKMFFGCQVSTKKFL--------T-----------------------LW----SAQDVCVSFGIGMRKLHFSFSWY-Q-------------K---------DYRLELSYENIWQIDLHS----PQGR--SSK--F--LVIQVIG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---KIFEKED-QPIN--LLFGIMDFYSDGSDEQWIRTTDFT---------------------SSSCIGQSTAFCLELPVH-----------LNVPDFRENFANYAEHRASSFLIESGSSY-----------------------------S---------SNANTLVPVVDPP-------------------------------------------------------------------------------------------------PGFSLPFEILFKLNTLVQNACLSG-PAL----------------------------------DLDFYRLLNQK-----KY---DRALIDHCLEKLFHL-----GE---------CCYEPAHWLRDEY-KKWISK-GKLPLSPTIS-L-D----------DG--------LVYMYRVQVTPARVYFS-------------------------GPEVNVSNRVLRHYS-KYINNFLRVSFVDEDL------------------------------------------EKVRSMDLSPRSST-----QR-----RTKLYDRIYSVLRDGIVI-------GDKKFEFLAFSSS-----------------QLRENSAWMFA--P---------------------------------------------------------IDRITAAHIRAWMG---DFDH----IR--NVAKYAARLGQ-----SF-------------------SSSRET----------L---NVR--SDEIEV---IPDV--EIISL------------GTR---YVFSDGIGKISAEFARKVARKCGL-------------------T--E----F----------------SPSAFQIRY----GGYKGVVAV--DP-N---------------------------S----SKKLSLR-KSMSKF---------------------ESE---------NTK-LDVLAW-----------SKYQPCYMNRQLITLLSTLG----------VTDSVFEKKQREVVDRL---------DAILTHPLEAHE----ALGLMAP-GEN---------------------TNILKALILCGYKPD--AEPFLSMMLQNFRASKL-LELRTKTRIFISG--GRSMMGCLDETR--TLEYG---------------------QVVVQY--S--------------------------------DPMRPGR----RFIITGPV-VVAKNPCLHS--GDVRVLQAVNVPA----------LNH--------------MVDCVVFPQKGL----RPHPNECSGSDLDGDIYFVCWDQEL--VPP---RTSEP-MDYTP---EP----TQ-----------ILDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFAN--YIVND-SLGIIANAHTAFA---DK-----------EPLKAFSDPCI---------------------------ELAKKFS----TAVDFPKTGVA---------AV---------------IPQH----LYVK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMEK-PD--------------------------------KPT---YE--------------------------------------------SKNVIGKLFREVKERAPPLISI----------------KSF----TLDV--------ASKS--YDK-----------------------------DMEVDGF----------EEYVDEAFY-QKAN------YDFKLGNLMDYYGI-------K-----TE-AEILSGGIMR---------------MSKSFTK--RRD----AESIG---R-------------AVRALRKETLSLFNA---SE-------------------EEEN--------ESAKASAWYHVTYHSSYWGLYNEG-------------------------------------------------------------------------------------------LN--------------RDHFL--SFAW----------------------------------------------------------------------C-------------------------------VYDKLVRIKKTNLGR-----RQRQET-----LE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLDHVLRFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1107]
'gi|2330856|emb|CAB11093.1| SPAC6F12.09 [Schizosaccharomyces pombe] >gi|19114207|ref|NP 593295.1| hypothetical protein SPAC6F12.'    M----AVSLNDFISVKLKRYSRESPWERLRVPYRNKKQKKWASVHNNEAQLHSANKRNDNCL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IQRSSTWRLGDMITLVIKDIPVT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WLSNEGGK-----LYNLWE-PLHDYGTI--------------------------------EFMK-------------------------------------------------------INEPLNGQTST------TAIVQFA-----------------PPPKVPFWEPNGKINVKGVDLAVQIDI---------------------------------------------------------TAHRSHISRQVFSKNSF-----------------------------RSDQLVKIPL--------------------------------------------------------------------------------------------------------------------------SSFKLGQVYDER-IVP------LF-----------------------GVDCGITVTESNLLVYFNFKKLCVLFDASF----------DKQIE---------TFRLDFDFHSIIGDVGTD----YYDD--HIS-----LVFRFRF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SP---LIFRKSK--NATESRVQTFW-----TASHLWRRHYDILPFNVSPTTASPIELLNC----HNAPIGRCNVLVLSF--SIRDESDK----DDIAFLLHNLEKFNLKSQLDKVVFHLVPDYKHRCSLI---------------------------------------------------------------------------------------------------------------------------------------------NDKEIEEEIAYLLQACLSKNLLSEIDL------------------------------------PIILANLK-------KL---SKERAKKFLRLILTS-----KT---------ALINPSELDFTKS-------------FVFYD-LSS----------AS--------SIHIKKLYVTPTTLRIV-------------------------EDSLEAGNRVIRNFK-DFANRFMRVQITDEYY------------------------------------------KQKIRGGSDG--------------FRNEKLYSRIQQLLTYGIKV-------GNQIYEFLAFGNS-----------------QLREHGAYFFA--S---------------------------------------------------------GSDLNAKQIREWMG---DFSE----IN--SVSKYAARMGQ-----CF-------------------STTKEI----------N---RFC---VDISL---QDDI------------------VRNN---HCFTDGVGMASLSVIRRLSLEVKN-------------------H-D-----M----------------FPSAFQFRM----GGYKGVLSL--AP-P-------------------------TKLEYHQGNLVFPR-RSQDKF---------------------KSF---------HST-LEVIKI-----------SRFSNAHLNMQLITLLEGLG----------VEKTVFLELTRSQLSKM---------NESINSKQKSIL----MLRDNVDEYHS---------------------TLIIADFIQAGFLER--DDAFTENLLNLYYEWVL-RLIKEKQKVSVPK--GAYLLGVADETG--TLKGH------------YDDAVLSVPEIFIQI--TD----------------TSTSFGSYSTG------------KLKTRVIVGLC-IVARNPSLHP--GDVRVCKAVRCDE----------LMH--------------LKNVIVFPTTGD----RSIPAMCSGGDLDGDEYTVIWDQRL--LPK-I-VNYPP-LLESS---PK----KSI---------DFLEGKP------------------------LIDSVKE----------------------------------------------------------------------------------------FFVN--YIKYD-SLGLISNAWKAWAHDHDN-----------NPEGIFGNVCL---------------------------ELAEMHS----KAVDFAKSGVA---------CK---------------MQAK----YHPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RY-P---DFMQK-TK--------------------------------TRS---FR--------------------------------------------SETAVGKIFRYAARFQRESGRP----------------AT-----YNPI--------MNTV--YDP-----------------------------CMKLPRF---------KTEYLNVAEE-VKKH------YDNDLRSIMARFDI-------S-----TE-YEVYTAFILF---------------KDDLAKTVNE------YGLREEVSF-------------QFDLLKKKYTQEYLE---KCALS---------------NQSAFDSSEYEERINSAVAATYDVTYDQRVKSVGNGT-----------------------------------------------------------------------------------------------------------TEVLI--SFPY----------------------------------------------------------------------L-------------------------------FSSRLCQLSRKAMLTANNF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1215]
'gi|15223906|ref|NP 172932.1| RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding [Arabidop'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VS-----AEEVKKFLERLTG-S--------------------------------GTV----------------------------------------------------------------------------YAIK----------------VRQPK--KGGPRVYAIVQFTSERHTRLI---------------ITAA-A--ERL-YYGRSYLKA------------------------FEVEQDIV----PK-----------------------------PRASLHTISG--------------------------------------------------------------------------------------------------------------------------LKMFFGCQVSTKKFL--------T-----------------------LW----SAQDVCVSFGIGMRKLHFSFSWY-Q-------------K---------DYRLELSYENIWQIDLHS----PQGR--SSK--F--LVIQVIG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---KIFEKED-QPIN--LLFGIMDFYSDGSDEQWIRTTDFT---------------------SSSCIGQSTAFCLELPVH-----------LNVPDFRENFANYAEHRASSFLIESGSSY-----------------------------S---------SNANTLVPVVDPP-------------------------------------------------------------------------------------------------PGFSLPFEILFKLNTLVQNACLSG-PAL----------------------------------DLDFYRLLNQK-----KY---DRALIDHCLEKLFHL-----GE---------CCYEPAHWLRDEY-KKWISK-GKLPLSPTIS-L-D----------DG--------LVYMYRVQVTPARVYFS-------------------------GPEVNVSNRVLRHYS-KYINNFLRVSFVDEDL------------------------------------------EKVRSMDLSPRSST-----QR-----RTKLYDRIYSVLRDGIVI-------GDKKFEFLAFSSS-----------------QLRENSAWMFA--P---------------------------------------------------------IDRITAAHIRAWMG---DFDH----IR--NVAKYAARLGQ-----SF-------------------SSSRET----------L---NVR--SDEIEV---IPDV--EIISL------------GTR---YVFSDGIGKISAEFARKVARKCGL-------------------T--E----F----------------SPSAFQIRY----GGYKGVVAV--DP-N---------------------------S----SKKLSLR-KSMSKF---------------------ESE---------NTK-LDVLAW-----------SKYQPCYMNRQLITLLSTLG----------VTDSVFEKKQREVVDRL---------DAILTHPLEAHE----ALGLMAP-GEN---------------------TNILKALILCGYKPD--AEPFLSMMLQNFRASKL-LELRTKTRIFISG--GRSMMGCLDETR--TLEYG---------------------QVVVQY--S--------------------------------DPMRPGR----RFIITGPV-VVAKNPCLHP--GDVRVLQAVNVPA----------LNH--------------MVDCVVFPQKGL----RPHPNECSGSDLDGDIYFVCWDQEL--VPP---RTSEP-MDYTP---EP----TQ-----------ILDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFAN--YIVND-SLGIIANAHTAFA---DK-----------EPLKAFSDPCI---------------------------ELAKKFS----TAVDFPKTGVA---------AV---------------IPQH----LYVK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMEK-PD--------------------------------KPT---YE--------------------------------------------SKNVIGKLFREVKERAPPLISI----------------KSF----TLDV--------ASKS--YDK-----------------------------DMEVDGF----------EEYVDEAFY-QKAN------YDFKLGNLMDYYGI-------K-----TE-AEILSGGIMR---------------MSKSFTK--RRD----AESIG---R-------------AVRALRKETLSLFNA---SE-------------------EEEN--------ESAKASAWYHVTYHSSYWGLYNEG-------------------------------------------------------------------------------------------LN--------------RDHFL--SFAW----------------------------------------------------------------------C-------------------------------VYDKLVRIKKTNLGR-----RQRQET-----LE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLDHVLRFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1107]
'gi|46109400|ref|XP 381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1] >gi|42544625|gb|EAA67468.1| hypothetical pro'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVICRNVPLD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LS-----EDNFKRELLPFMKAL----------------------------------------------------------------------------------------------------------------------------------NISDFYCEKPRRKSQAWIKFLSAQDGSAFLARHGKQRRCENHGKENI----DPSNPLNNFTGSHIFRSVPRDIARLHILKTAVFVEQSTKPVDKYA-------IAHLKHEREKKK-------QSTTTSNNKGRHAPEKAFQV--------------------------------------------------------------------------------------------------------------------------SAISCGGNTFHGPNEVITFVDHHK-----------------------LLFRPEA-----VTGKFTSQWLTIQVEH--------------------------AHRMDFHNETIQDLIATR--------------SDMSITLVLTE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PP---KMYTYRPPTFERS-------------------------------MQEWSRVHGLHAWGLPADCTLSCLVYRIYFYDT-----------ISFDQVLVTLKNKNILAITNHDLPSVRWI------------------------------EIGAESNHTIGRQTLVEKSKNL------------------------------------------------------------------------------------------------LTSGRVHFALLFQVQALVWNNFINPASG------------------------------------IKLLDLLECVIEDHKKRKV-AVPVTTDAMKKLFQT--IPYPCPG----TEPKELDVVSIMTNIMDAEYEARKDDPERDRIYGGKLP----------PN--------QIWVFKALVTPTRLLLD-------------------------GPEAESKNRVLRKYA-DYNDYFLRVLFCEEGG------------------------------------------QDLRFHPK----------------VDNEPIYSQFRRMMDHGIQI-------AGRKFDFLGFSHS-----------------SLRSHSAWFSA--PFIDKD----------------------------------------------------RQLQSPEAILQALG---DFRD----IR--VPAKCAARIGQ-----AF-------------------SETPYA----------V---PIF--ENNIVPRY-IPDVKSE----------------DGS---RVFSDGVGTISQEALEAIWPYLSM-------------------------NSA----------------APTCLQIRW----GGCKGMLSL--DT-R-------------------------LE-----GKVFCIRQESMMKF---------------------KSE---------DTGELGICDT----------ASKPLRLVLNRQMIKILEDMG----------TRDEWFFELQNNALDIL---------RNVTADATNTSS----FLEHQAIGINMGL-------------------PRLVKQLEKMDIDYR--RDKFLKAAVEHVVLREL-RLLKHKARIPVDN--GVTLFGIMDETG--FLKEG---------------------EVYVTY--DK----------------TYGRNNSR---------------GIKSTLTDGEI-IVTRSPALHP--GDIQLVKQVTPPQ-------GHSLRS--------------LQNCIVFSQKGK----RDLPSMLSGGDLDGDIYNIIWDPEA--MPS---RVFRP-ADYPR---VT----PQ-----------PLDRQV------------------------EPKDIAD----------------------------------------------------------------------------------------FFIN--FMRTD-ILGVIATRHVILA---DY-----------NDLGSIDRDCI---------------------------ALAELHS----TAVDFSKTGIP---------VN---------------VKAL----PRAP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RFRP---DFLATAPPLKLYDKGQLA---HIGEDDEMDDADDMARTK-TNY---YQ--------------------------------------------SEKILGQLYRNVDEKKIWDEDI----------------HRR----INTAG-----PSVWDQLLTIV-----------------------------ENEAIKY----KLDIDWKRQSQEAWK-IRGL------YESSIEDKRWHFSE-------NPRVPLTE-VEVFCGFILN---------------KRGAQTRRQGDAS---IKLKEEIDR-------------TMTWIVKQIRDRGVG--------------DGAETLSTVTEADGTTSRWREDVVELCWACVAVSCIKKDNAPELYHG----------------------------------------------------------------------------------------------------------NGELE--SFHI----------------------------------------------------------------------V-------------------------------AASCLVRELNNLARKMETAAGGGFVG-----VGCDGRSGRGGRGGKNG-------IECCLMEIKDMDMDTGMSTEGLCASDDLRQERALNARIHGGSDSVECVSEEHRLDFAQTNTWIVNSKLPDSLAKTIEHQKNKNQFPNRVDPYPSAVPWFSEEDRNRLSNKALLAISAAPRDSNTGVHGRANQLKKIRVPGMRNMTINRDLWQVKASYTRMASLKRNAFTPLLLVATMMTISDKLSAWKCLRYVGI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1467]
'gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa] >gi|85110327|ref|XP 963405.1| hypothetic'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVYIRNLPQG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LS-----ERSLTAHLKPFMDNL----------------------------------------------------------------------------------------------------------------------------------GIRHYDCNKRSNQPFGKVIFITAREALNFIAKH----------------------------------------PRLYIMNQQAECRVSKPQPKDLKNLVNGILYEAEEKERRKKA------WEENTSNNARPARTPTLALDA--------------------------------------------------------------------------------------------------------------------------DVLDCGHWSYIDGN---------------------------------LTFITEWSSSLRVSAKFAKHDLVITSLA--------------------------ESQVSIPYRYIHELVWSN----------GGH-----VAVTLAH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---TFLSPPIPLLR---------------------------------PGQPKRMRLEACDSNHAKVSKFCLVYHFKVSDKHLKQNQGSYRGSDFRTAINGLNEQEMFWVTHYTFAIQTTS-----------------------------PQDAYAVAVDRLRAALLEYE----------------------------------------------------------------------------------------------------GRDTLPYSLLFNLQALVYMSYLHPTTV------------------------------------LKLAKRLADMFETARRSGQRQDPISVDAFKDLFKT--IDWPSPSLSSAEELAQFEVEGIIEHLKKTEKRMREGYTLRLNEEIPPG---------------------LTKIYRALVTPTRIELH-------------------------GPELEAKNRILRKFP-EHQDHFLRVQFAEEDG------------------------------------------QDLFFNSA----------------VSMDAIYQRFKDVLTNGISV-------GGRVYRFLGFSHS-----------------SLRAHSLWLAA--PFIYD-----------------------------------------------------GKLQLASNIIEDLG---DFRN----IM--SPARRAARIGQ-----AF-------------------SETPYS----------V---SLY--DHGIDVIR-QRDVK------------------RNE---RVFSDGVGIISQGALEVIHREIPE-------------------------SKG----------------YPNCLQVRW----AGAKGMLAL--DA-R-------------------------LT-----GRQICIR-DSMEKF---------------------RSR---------DEEHLEICDM----------ASKPIPLMLNRQMIKILEDMR----------APAQWFLELQEKELQRL---------RAITDNVQNVAT----FLKLQCVGDSVHL-------------------SQFLKDLDKMNIDYR--RDQFLRGIVEAVVLREL-RLLKHKARIPVPY--GVTLFGVMDETG--LLREG---------------------EVYVTF--ET------------------------------------VDGRFKDPPTAGPV-VVTRSPALHP--GDIQIAHNAIPPA-------GHPLRE--------------LKNCIVFSQNGE----RDLPSQLSGGDLDGDTFNVIWDQSI--VATL--RTFAA-ADYPR---VE----PL-----------KLNREV------------------------ESKDMAD----------------------------------------------------------------------------------------FFVE--FMKAD-HLGVIAVRHMILA---DE-----------RNEGTLDADCL---------------------------KLAALHS----KAVDFSKSGIH---------VD---------------ITEL----PRPP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYRP---DFLVNGPDIKIHDKSTIDMEEQYLR-QDDDDGDDTPR---YKY---YK--------------------------------------------SDKILGRLFRAVDEKKIWTKNI----------------KLE----VPSGG-----VPFWKEVESSL-----------------------------LKRVRGI-----GQVQWQHRLDEARR-ICES------YEDGIKDAMVEFAD-------SPTQPLKE-LEVVMGFILN---------------KKGIQSRRQRDKS---SKLSDAFAR-------------ITKMVTNVLRPSTPP----------------------------EEATSELHALELCLACFYVAGEKKSQPQE--------------------------------------------------------------------------------------------------------SWKRQIATGLE--SFRL----------------------------------------------------------------------V-------------------------------AGSALLLEIKAQEQKIRLRHAARSGGFVGVRGGSRVAGRGGRGGHRQPARVDVNTAAEAATLQTADTGAAFGLGSPSSTSAPTTPSSGSNYTPSSGSDMRDGIFNSPTGPYAGYQPELVHAQAGARTAGTSGGQVPSAAPANMPVRLAPADKVAHLAALYAQMQIYQRH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1351]
'gi|15237051|ref|NP 192851.1| RDR2 (RNA-DEPENDENT RNA POLYMERASE 2); RNA-directed RNA polymerase [Arabidopsis thaliana] >gi|7267'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVSETTTNRSTVKISNVPQT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IV-----ADELLRFLELHLG-E--------------------------------DTV----------------------------------------------------------------------------FALE----------------IPT-TRDNWKPRDFARVQFTTLEVKSRA---------------QLLSSQ--SKL-LFKTHNLRL------------------------SEAYDDII----PR-----------------------------PVDPRKRLDD--------------------------------------------------------------------------------------------------------------------------IVLTVG-FPESDEKRF------CA-----------------------LE----KWDGVRCWILTEKRRVEFWVWES-G-------------D---------CYKIEVRFEDIIETLSCC----VNGD--ASEIDA--FLLKLKY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GP---KVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFS---------------------GSKSIGTSTCFCLEVHNG-----------STMLDIFSGLPYYREDTLSLTYVDGKTF----------------------------------------ASAAQIVPLLNAA------------------------------------------------------------------------------------------------ILGLEFPYEILFQLNALVHAQKISLFAAS----------------------------------DMELIKILRG-------M---SLETALVILKKLHQQ-----SS---------ICYDPVFFVKTQM-QSVVKKMKHSPASAYKR-LTE----------QN--------IMSCQRAYVTPSKIYLL-------------------------GPELETANYVVKNFA-EHVSDFMRVTFVEEDW------------------------------------------SKLPANALSVNSKE-----GYFVKPSRTNIYNRVLSILGEGITV-------GPKRFEFLAFSAS-----------------QLRGNSVWMFA--S---------------------------------------------------------NEKVKAEDIREWMG---CFRK----IR--SISKCAARMGQ-----LF-------------------SASRQT----------L---IVR--AQDVEQ---IPDI--EVTTD------------GAD---YCFSDGIGKISLAFAKQVAQKCGL----------------------S----H----------------VPSAFQIRY----GGYKGVIAV--DR-S---------------------------S----FRKLSLR-DSMLKF---------------------DSN---------NRM-LNVTRW-----------TESMPCFLNREIICLLSTLG----------IEDAMFEAMQAVHLSML---------GNMLEDRDAALN----VLQKLSG-ENS---------------------KNLLVKMLLQGYAPS--SEPYLSMMLRVHHESQL-SELKSRCRILVPK--GRILIGCMDEMG--ILEYG---------------------QVYVRV--TL----------------TKAELKS-----RDQSYFRKI--DEETSVVIGKV-VVTKNPCLHP--GDIRVLDAIYEVH----------FEE------------KGYLDCIIFPQKGE----RPHPNECSGGDLDGDQFFVSWDEKI--IPS---EMDPP-MDYAG---SR----PR-----------LMDHDV------------------------TLEEIHK----------------------------------------------------------------------------------------FFVD--YMISD-TLGVISTAHLVHA---DR-----------DPEKARSQKCL---------------------------ELANLHS----RAVDFAKTGAP---------AE---------------MPYA----LKPR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EF-P---DFLER-FE--------------------------------KPT---YI--------------------------------------------SESVFGKLYRA-VKSSLAQRKP----------------EAE----SEDT--------V--A--YDV-----------------------------TLEEAGF----------ESFIETAKA-HRDM------YGEKLTSLMIYYGA-------A-----NE-EEILTGILKT---------------KEMYLARDNRRY----GDMKDRITL-------------SVKDLHKEAMGWFEK---SC-------------------EDEQQ-------KKKLASAWYYVTYNPNH--------------------------------------------------------------------------------------------------RDE-------------KLTFL--SFPW----------------------------------------------------------------------I-------------------------------VGDVLLDIKAENA--QRQSVEEKTSG-----LV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1133]
'gi|67524519|ref|XP 660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4] >gi|40743829|gb|EAA63015.1| hypotheti'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVFVHNLPGN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FT-----KDSLKHQLEPFMRSL----------------------------------------------------------------------------------------------------------------------------------AITDYDCEKPRKKRFGHILFLNQSDGKRFLAHHGEERRAGRR----------------------------RPLSKLNLLGSQVLCKPSHRKPDEFD-------LRALENEVQERTNP----------SRIIEEEGGSVSFIL--------------------------------------------------------------------------------------------------------------------------STASCGYTVFVDNE---------------------------------FSYVPEVELQQYDSIIFRKRNITVHLGN--------------------------TPRIKIPLNTIYELVWSK----------HGS-----LLLTLVT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VP---LFFQ----------------------------------------CDGHSRIRLTSPGGPQAAVVGQCLVYQFQVVSSS----------SNLRARMGKVAEYDLS-VINYEFKTVHNF-------------------------------DSWQSQLTLLRDRLGEYT----------------------------------------------------------------------------------------------------RAGTLPFGILFQLQALVYNGYLPPNIV------------------------------------LRLTRKLASITKTRKVQG--RRPISVNSMKRLFNL--IDWPSPF----GDPEEFSIKRLLEVITGNDKDLGEGASEAEALFQPAPH--------------------LAHIHRVVVTPSRITLH-------------------------GPETEPLNRILRRFP-NHHEYFIRVQFCDENG------------------------------------------EDIYFNPR----------------INNSLIFARFKNVFANGFQI-------AGRTYTFLGFSHS-----------------SLRSRSAWFSA--PFIDDD----------------------------------------------------GSLQSYFTIIKAIG---RFSE----IT--SPARCAARIGQ-----AF-------------------SETPFA----------V---NLK--ENGIRVLR-IPDVQ------------------VGG---RVFSDGVGTISAKAVDIIHGVLPP-------------------------RNG----------------APTCFQIRL----GGAKGMLSL--DP-R-------------------------LR-----GSKICIR-PSMTKF---------------------QTD---------DQVNVEICGS----------GSKPIPLFLNRQVIKILEDMG----------VDREWFMTLQELRIEQL---------RKATATTKNTAT----FVKGQSVADCVKL-------------------YRLFLLFHNLKLDYK--KIPFLRAVVEAMVLREL-RLLKHKARIPVHK--GITLYGVMDETG--FLNEN---------------------EVFVTY--QA-------------------------------------MDRLAAPPQNCRL-LVTRSPALHN--GDIQYPYNVVPPK-------GHPLQQ--------------QRNCIVFSQKGT----RDLPSQLSGGDLDGDLYNIIWDPAA--APK---RVFTP-ANYPR---NP----PL-----------DIKRVV------------------------EREDMAN----------------------------------------------------------------------------------------FFVE--FMQSD-RLGVIATKHMILA---DQ-----------MELGTSHSDCK---------------------------KLAQLHS----TAVDFSKTGIP---------VR---------------LKEM----PFVN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSRP---DFLAPGPLAKIHDRQNIQLEARYVHPYPDDDIDFSPV---HKY---YR--------------------------------------------SEKILGKLYRAINEHEIWTKDI----------------HTT----VNSNP-----TAVWKRIIDSL-----------------------------TGRCIAL----GAPVNWKAHVETARQ-LRSLYYILPTYEDSMSNAMANFSK-------HPIYPLTE-LEVFIGQVLN---------------NSGAQTNRQRERS---IKLNDEFER-------------IASFILSQMRPSGLI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGYV----------------------------------------------------------------------V-------------------------------SACALLMEVEELEKSRRLYGENRRPLLDAFTSSRKEKNDYEPKGLDRATQKTTFEYGERWTAADVEAMLRQLELNTIV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1203]
'gi|53749452|gb|AAU90307.1| RNA-directed RNA polymerase [Solanum tuberosum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LP-----AEVVKSFLEKHTG-Y--------------------------------GTV----------------------------------------------------------------------------CALD----------------VKQ-S--KGGSRAFAKVQFVDNISADKI---------------INLA-S--KRL-YFGSSYLKA------------------------WEMKTDIV-----Q-----------------------------V-AYVDHMDG--------------------------------------------------------------------------------------------------------------------------ITLNFGCQISDDKFA--------V-----------------------LG----ST-EVSIKFGIGLKKIYFFLSRG-S-------------A---------DYKLQLSYENIWQVVLHR----PYGQ--NAQ--F--LLIQLFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---RIYKR---------LENSCYSFFKETPDDQWVRTTDFA----------------------PSWIGLSSSLCLQFRRG-----------VHLPNFQESFFHYAERENNITLQTGFTFF-----------------------------I---------SQKSALVPNVQPP-------------------------------------------------------------------------------------------------EGIAIPYKILFKISSLVQHGCIPG-PSL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY-DGYLKG-RQPPKSPSIT-L-D----------DG--------LVYVRRVLVTPCKVYFC-------------------------GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELLPKAST-----GNGI---RTNIYERILSTLRKGFVI-------GDKKFEFLAFSSS-----------------QLRDNSVWMFA--S---------------------------------------------------------RPGLTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SF-------------------GSSTET----------L---SVL--RHEIEV---IPDV--KV--H------------GTS---YVFSDGIGKISADFARRVASKCGL----------------------Q----Y----------------TPSAFQIRY----GGYKGVVAV--DP-Y---------------------------S----SMKLSLR-KSMSKY---------------------ESD---------NNK-LDVLGW-----------SKYQPCFLNRQLITLLSTLG----------VKDDILEQKQKEAVDQL---------DAILHDSLKAQE----ALELMSP-GEN---------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQF--T-----------------GAGHREFS----EDLHPFNNSRSTNCNFILKGNV-VVAKNPCLHP--GDIRVLRAVNVPA----------LHH--------------MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDPDM--IPP---RQVQP-MEYPP---AP----SI-----------QLDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFTN--YIVND-SLGIISNAHVVFA---DR-----------EPDMAMSDPCK---------------------------KLAELCS----IAVDFPKTGVP---------AE---------------IPSQ----LRPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMDKPPD--------------------------------KTT---YI--------------------------------------------SERVIGKLFRKVKDKAPQASST----------------AIF----TRDV--------ARRS--YDA-----------------------------DLEVDGF----------EDYIDEAFD-YKTE------YDNKLGNLMEYYGI-------K-----TE-AEILSGGIMK---------------TSKTFDR--RKD----AEAIS---I-------------AVRALRKEARTWFKR---RN-------------------DIDD--------MLPKASAWYHVTYHPTYWGCYNQG-------------------------------------------------------------------------------------------LK--------------RDHFI--SFPW----------------------------------------------------------------------C-------------------------------VYDQLIQIKKEKARN--RPVLNLSYL-----RA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLSRKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1114]
'gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Lycopersicon esculentum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LS-----AEVVKSFLEKYTG-Y--------------------------------GTV----------------------------------------------------------------------------CALE----------------VKQ-S--KGGSRAFAKVQFADNISADKI---------------ITLA-N--NRL-YFGSSYLKA------------------------WEMKTDIV-----Q-----------------------------LRAYVDQMDG--------------------------------------------------------------------------------------------------------------------------ITLNFGCQISDDKFA--------V-----------------------LG----ST-EVSIQFGIGLKKFFFFLSSG-S-------------A---------DYKLQLSYENIWQVVLHR----PYGQ--NAQ--F--LLIQLFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---RIYKR---------LENSCYSFFKETPDDQWVRTTDFP----------------------PSWIGLSSSLCLQFRRG-----------VRLPNFEESFFHYAERENNITLQTGFTFF-----------------------------V---------SQKSALVPNVQPP-------------------------------------------------------------------------------------------------EGISIPYKILFKISSLVQHGCIPG-PAL----------------------------------NVYFFRLVDPR-----RR---NVACIEHALEKLYYI-----KE---------CCYDPVRWLTEQY-DGYLKG-RQPPKSPSIT-L-D----------DG--------LVYVRRVLVTPCKVYFC-------------------------GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTDLLPKAST-----GSGV---RTNIYERILSTLRKGFVI-------GDKKFEFLAFSSS-----------------QLRDNSVWMFA--S---------------------------------------------------------RPGLTANDIRAWMG---DFSQ----IK--NVAKYAARLGQ-----SF-------------------GSSRET----------L---SVL--RHEIEV---IPDV--KV--H------------GTS---YVFSDGIGKISGDFAHRVASKCGL----------------------Q----Y----------------TPSAFQIRY----GGYKGVVGV--DP-D---------------------------S----SMKLSLR-KSMSKY---------------------ESD---------NIK-LDVLGW-----------SKYQPCYLNRQLITLLSTLG----------VKDEVLEQKQKEAVDQL---------DAILHDSLKAQE----ALELMSP-GEN---------------------TNILKAMLNCGYKPD--AEPFLSMMLQTFRASKL-LDLRTRSRIFIPN--GRTMMGCLDESR--TLEYG---------------------QVFVQF--T-----------------GAGHGEFS----DDLHPFNNSRSTNSNFILKGNV-VVAKNPCLHP--GDIRVLKAVNVRA----------LHH--------------MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQP-MEYPP---AP----SI-----------QLDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFTN--YIVND-SLGIIANAHVVFA---DR-----------EPDMAMSDPCK---------------------------KLAELFS----IAVDFPKTGVP---------AE---------------IPSQ----LRPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMDK-PD--------------------------------KTS---YI--------------------------------------------SERVIGKLFRKVKDKAPQASSI----------------ATF----TRDV--------ARRS--YDA-----------------------------DMEVDGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGI-------K-----TE-AEILSGGIMK---------------ASKTFDR--RKD----AEAIS---V-------------AVRALRKEARAWFKR---RN-------------------DIDD--------MLPKASAWYHVTYHPTYWGCYNQG-------------------------------------------------------------------------------------------LK--------------RAHFI--SFPW----------------------------------------------------------------------C-------------------------------VYDQLIQIKKDKARN--RPVLNLSSL-----RA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLSHRLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1114]
'gi|53689742|gb|AAU89754.1| RNA-directed RNA polymerase-like [Solanum tuberosum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EHLSVFQI---------------YNLG-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---RIYKR---------LENSCYSFFKETPDDQWVRTTDFT----------------------PSWIGLSSSLCLQFRRG-----------VHLPNFQESFFHYAERENNITLQTGFTFF-----------------------------V---------SQKSALVPNVQPP-------------------------------------------------------------------------------------------------EGIAIPYKILFKISSLVQHGCIPG-PAL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY-DGYLKG-RQPPKSPSIT-L-D----------DG--------LVYVRRVLVTPCKVYFC-------------------------GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELLPKAST-----GNGI---RTNIYERILSTLRKGFVI-------GDKKFEFLAFSSS-----------------QLRDNSVWMFA--S---------------------------------------------------------RRGLTTNDIRSWMG---DFSQ----IK--NVAKYAARLGQ-----SF-------------------GSSRET----------L---SVL--RHEIEV---IPDV--KV--H------------GTS---YVFSDGIGKISADFARRVASKCGL----------------------Q----Y----------------TPSAFQIRY----GGYKGVVAV--DP-Y---------------------------S----SMKLSLR-KSMSKY---------------------ESD---------NNK-LDVLGW-----------SKYQPCYLNRQLVTLLSTLG----------VKDDVLEQKQKEAVHQL---------DAILHDSLKAQE----ALELMSP-GEN---------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTRSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQF--T-----------------GAGHREFS----EDLHPFNNSRSTNCNFILKGNV-VVAKNPCLHP--GDIRVLRAVDVPA----------LHH--------------MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQA-MEYPP---AP----SI-----------QLDHNV------------------------TIEEVEE----------------------------------------------------------------------------------------YFTN--YIVND-SLGIIANAHVVFA---DR-----------EPDMAMSDPCK---------------------------KLAELFS----IAVDFPKTGVP---------AE---------------IPSQ----LRPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMDKPPD--------------------------------KTT---YI--------------------------------------------SERVIGKLFRKVKDKAPQASSI----------------AIF----TRDV--------ARRS--YDA-----------------------------DLEVDGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGI-------K-----TE-AEILSGGIMK---------------ASKTFDR--RKD----AEAIS---V-------------AS---------------------------------------------------PTGGIILGITLDG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [886]
'gi|47824981|gb|AAT38754.1| RNA-directed RNA polymerase [Solanum demissum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EHLSVFQI---------------YNLG-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---RIYKR---------LENSCYSFFKETPDDQWVRTTDFA----------------------PSWIGLSSSLCLQFRRG-----------VHLPNFQESFFHYAERENNITLQTGFTFF-----------------------------I---------SQKSALVPNVQPP-------------------------------------------------------------------------------------------------EGIAIPYKILFKISSLVQHGCIPG-PSL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY-DGYLKG-RQPPKSPSIT-L-D----------DG--------LVYVRRVLVTPCKVYFC-------------------------GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELLPKAST-----GNGI---RTNIYERILSTLRKGFVI-------GDKKFEFLAFSSS-----------------QLRDNSVWMFA--S---------------------------------------------------------RPGLTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SF-------------------GSSKET----------L---SVL--RHEIEV---IPDV--KV--H------------GTS---YVFSDGIGKISADFARRVASKCGL----------------------Q----Y----------------TPSAFQIRY----GGYKGVVAV--DP-Y---------------------------S----SMKLTLR-KSMSKY---------------------ESD---------NNK-LDVLGW-----------SKYQPCFLNRQLITLLSTLG----------VRDDILEQKQKEAVDQL---------DAILHDSLKAQE----ALELMSP-GEN---------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQF--T-----------------GAGHREFS----EDLHPFNNSRSTNCNFILKGNV-VVAKNPCLHP--GDIRVLRAVDVPA----------LHH--------------MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQP-MEYPP---AP----SI-----------QLDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFTN--YIVND-SLGIISNAHVVFA---DR-----------EPDMAMSDPCK---------------------------KLAELCS----IAVDFPKTGVP---------AE---------------IPSQ----LRPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMDKPPD--------------------------------KTT---YI--------------------------------------------SERVIGKLFRKVKDKAPQASST----------------AIF----TRDV--------ARRS--YDA-----------------------------DLEVDGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGI-------K-----TE-AEILSGGIMK---------------TSKTFDR--RKD----AEAIS---I-------------AVRALRKEARTWFKR---RN-------------------DIDD--------MLPKASAWYHVTYHPTYWGCYNQG-------------------------------------------------------------------------------------------LK--------------RDHFI--SFPW----------------------------------------------------------------------C-------------------------------VYDQLIQIKKEKARN--RPVLNLSYL-----RA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLSRKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [963]
'gi|47824908|gb|AAT38684.1| RNA-directed RNA polymerase [Solanum demissum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LP-----AEVVKSFLEKHTG-Y--------------------------------GTV----------------------------------------------------------------------------CALD----------------VKQ-S--KGGSRAFAKVQFVDNISADKI---------------INLA-S--KRL-YFGSSYLKA------------------------WEMKTDIV-----Q-----------------------------V-AYVDHMDG--------------------------------------------------------------------------------------------------------------------------ITLNFGCQISDDKFA--------V-----------------------LG----ST-EVSIKFGIGLKKIYFFLSRG-S-------------A---------DYKLQLSYENIWQVVLHR----PYGQ--NAQ--F--LLIQLFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---RIYKR---------LENSCYSFFKETPDDQWVRTTDFA----------------------PSWIGLSSSLCLQFRRG-----------VHLPNFQEKFFHYAERENNITLQTGFTFF-----------------------------I---------SQKSSLVPNVQPP-------------------------------------------------------------------------------------------------EGIAIPYKILFKISSLVQHGCIPG-PAL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY-DGYLKG-RQPPKSPSIT-L-D----------DG--------LVYVRRVLVTPCKVYFC-------------------------GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELLPKAST-----GNGI---RTNIYERILSTLRKGFVI-------GDKKIEFLAFSSS-----------------QLRDNSVWMFA--S---------------------------------------------------------RPGLTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SF-------------------GSSKET----------L---SVL--RHEIEV---IPDV--KV--H------------GTS---YVFSDGIGKISADFARRVASKCGL----------------------Q----Y----------------TPSAFQIRY----GGYKGVVAV--DP-Y---------------------------S----SMKLSLR-KSMSKY---------------------ESD---------NNK-LDVLEW-----------SKYQPCYLNRQLITLLSTLG----------VKDDVLEQKQKEAVDQL---------DAILHDSLKAQE----ALELMSP-GEN---------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQF--T-----------------GAGHREFS----EDLHPFNNSRSTNCNFILKGNV-VVAKNPCLHP--GDIRVLRAVDVPA----------LHH--------------MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQP-MEYPP---AP----SI-----------QLDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFTN--YIVND-SLGIISNAHVVFA---DR-----------EPDMAMSDPCK---------------------------KLAELCS----IAVDFPKTGVP---------AE---------------IPSQ----LRPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMDKPPD--------------------------------KTT---YI--------------------------------------------SERVIGKLFRKVKDKAPQASST----------------AIF----TRDV--------ARRS--YDA-----------------------------DLEVDGF----------EDYIDEAFD-YKTE------YDSKLGNLMDYYGI-------K-----TE-AEILSGGIMK---------------TSKTFDR--RKD----AEAIS---I-------------AVRALRKEARTWFKR---HN-------------------DIDD--------MLPKASAWYHVTYHPTYWGCYNQG-------------------------------------------------------------------------------------------LK--------------RDHFI--SFPW----------------------------------------------------------------------C-------------------------------VYDQLIQIKKEKARN--RPVLNLSYL-----RA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLSRKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1114]
'gi|53689719|gb|AAU89734.1| RNA-directed RNA polymerase-like [Solanum tuberosum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LP-----AEVVKSFLEKHTG-Y--------------------------------GTV----------------------------------------------------------------------------CALD----------------VKQ-S--KGGSRAFAKVQFVDNISADKI---------------INLA-S--KRL-YFGSSYLKA------------------------WEMKTDIV-----Q-----------------------------V-AYVDHMDG--------------------------------------------------------------------------------------------------------------------------ITLNFGCQISDDKFA--------V-----------------------LG----ST-EVSIKFGIGLKKIYFFLSRG-S-------------A---------DYKLQLSYENIWQVVLHR----PYGQ--NAQ--F--LLIQLFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AP---RIYKR---------LENSCYSFFKETPDDQW------------------------------------------FRRG-----------VHLPNFQESFFHYAERENNITLQTGFTFF-----------------------------I---------SQKSALVPNVQPP-------------------------------------------------------------------------------------------------EGIAIPYKILFKISSLVQHGCIPG-PSL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY-DGYLKG-RQPPKSPSIT-L-D----------DG--------LVYVRRVLVTPCKVYFC-------------------------GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELLPKAST-----GNGI---RTNIYERILSTMQKGFVI-------GDKKFEFLAFSSS-----------------QLRDNSVWMFA--S---------------------------------------------------------RPGLTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SF-------------------GSSKET----------L---SVL--RHEIEV---IPDV--KV--H------------GTS---YVFSDGIGKISADFARRVASKCGL----------------------Q----Y----------------TPSAFQIRY----GGYKGVVAV--DP-Y---------------------------S----SMKLSLR-KSMSKY---------------------ESD---------NNK-LDVLGW-----------SKYQPCYLNRQLITLLSTLG----------VKDDILEQKQKEAVDQL---------DAILHDSLKAQE----ALELMSP-GEN---------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQF--T-----------------GAGHREFS----EDLHPFNNSRSTNCNFILKGNV-VVAKNPCLHP--GDIRVLRAVDVPA----------LHH--------------MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQP-MEYPP---AP----SI-----------QLDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFTN--YIVND-SLGIISNAHVVFA---DR-----------EPDMAMSDPCK---------------------------KLAELCS----IAVDFPKTGVP---------AE---------------IPSQ----WRPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMDKPPD--------------------------------KTT---YI--------------------------------------------SERVIGKLYRKVKDKAPQASST----------------AIF----TRDV--------ARRS--YDA-----------------------------DLEVDGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGI-------K-----TE-AEILSGGIMK---------------TSKTFDR--RKD----AEAIS---I-------------AVRALRKEARTWFKR---RN-------------------DIDD--------MLPKASAWYHL-----------QQ-------------------------------------------------------------------------------------------AD--------------EDDFV---------------------------------------------------------------------------------------------------------------QRIMVPKSSSLYYFPDIIALELY-----TK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EFKRKKSD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1076]
'gi|47824911|gb|AAT38687.1| RNA-directed RNA polymerase [Solanum demissum]'                                    -------------------------------MVDGYEALGCPLVKHL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NVELHLEFGYMGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LS-----AEVVKSFLEKHTG-Y--------------------------------GTV----------------------------------------------------------------------------CALE----------------VKQ-S--KRGSRAFAKVQFVDNISADKI---------------INLA-S--KRL-YFGSSYLKA------------------------WEMKADIV-----Q-----------------------------LRAYVDHMDG--------------------------------------------------------------------------------------------------------------------------ITLNFGCQISDD--------------------------------------------------------------NG-S-------------A---------DYKLQLSYENIWQVVLHR----PYGQ--NAQ--F--LLIQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ETPDDQWVRTTDFA----------------------PSWIGLSSSLCLQFRRG-----------VHLPNFQESFFHYTERENNITLQTGFTFF-----------------------------V---------SQKSALVPNVQPP-------------------------------------------------------------------------------------------------EGIAIPYKILFKISSLVQHGCIPG-PAL----------------------------------DVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY-DGYLKG-RQPPKSPSIT-L-D----------DG--------LVYVRRVLVTPCKVYFC-------------------------GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTDLLPKAST-----GNGI---RTNIYERILSTLRKGFVI-------GDKKFEFLAFSSS-----------------QLRDNSVWMFA--S---------------------------------------------------------RPGLTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SF-------------------GSSKET----------L---SVL--RHEIEV---IPDV--KV--H------------GTS---YVFSDGIGKISADFARRVASKCGL----------------------Q----Y----------------TPSAFQIRY----GGYKGVVAV--DP-Y---------------------------S----SMKLSLR-KSMSKY---------------------ESD---------NNK-LDVLGW-----------SKYQPCYLNRQLVTLLSTLG----------VKDDVLEQKQKEAVDQL---------DAILHDSLKAQE----ALELMSP-GEN---------------------TTILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTRSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQF--T-----------------GAGHREFS----EDLHPFNNSRSTNCNFILKGNV-VVAKNPCLHP--GDIRVLRAVDVPA----------LHH--------------MVDCVVFPQKGKSFDDRPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQP-MEYPP---AP----SI-----------QLDHDV------------------------TIEEVEE----------------------------------------------------------------------------------------YFTN--YIVND-SLGIIANAHVVFA---DR-----------EPDMAMSDPCK---------------------------KLAELFS----IAVDFPKTGVP---------AE---------------IPSQ----LRPK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EY-P---DFMDK-PD--------------------------------KTT---YI--------------------------------------------SERVIGKLFRKVKDKAPQASSI----------------AIF----TRDV--------ARRS--YDV-----------------------------DLEVDGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGI-------K-----TE-AEILSGGIMK---------------TSKTFDR--RKD----AEAIS---I-------------AVRALRKEARTWFKR---RN-------------------DIDD--------MLPKASAWYH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LIQIKKEKALN--RPVLNLSSL-----RA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLSHKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1068]
;
END;


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