#NEXUS [MacClade 4.08 registered to M. Hasebe, NIBB] BEGIN DATA; DIMENSIONS NTAX=31 NCHAR=1584; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|18424272|ref|NP 568912.1| VIP2; transcription regulator [Arabidopsis thaliana] >gi|12006939|gb|AAG44978.1| VIP2 protein [Ara' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQGTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLS-QLSHGSSHGHSGIPNRG-LNVVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQ-LLGNSGPRITNSM------GNMVGGGNLGRNISSG-GLSIPGL-SSRLNLAANSGSG-LNVQG--QNRMMGGVLPQG----------------------------------------------------------------S-Q---VMSMLGNSYHTGGGPLSQNHVQ------SVNN-------M----MLSD-HPNDSSLFDINNDF----------------------PQLT-SRPGS---AGGTQGHLG---------------------------------------SLRKQGLG-------------V-PLVQQNQEFSIQNEDFPALPGYKG-----------------------------------GN-SEYPMDL------------------------------HQKEQLHDNAMSMMHSQNFS-----------------------MGRSGGFNLGATYSSHRPQQQ------------PQHTSST-----------------------------------GG------------LQGLGLRPLSSPNAVSSIGYD-QLIQQYQQHQNQSQ---FPVQQMS-----------------------------------SINQ-FRD---SEMKSTQSEA--------------------------------------------DPFCLL-----------------------------------------GLLDVLN----------R--------------------SNPELTSLALGIDLTTLGLDLNSTG-N--LYKTFASPWTN------EPAK---SEVE----------FTVPNCYY--ATE---PPPLTRASFKRFSYELLFYTFY----------------------SMPKDEAQLY----AADEL-Y-----------------ERGWFYH--KELRVWFFRV-G--E-------PLVRAATY-ERGTYEYLDPN--SFKTVRK-------------------EHFVIKYELMEKRPSLLQ-----------------------------------------------------------------------------L-------------------- [556] 'gi|62824286|gb|AAY15746.1| VIP2 [Nicotiana benthamiana]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQGTLTSRNTAINNVPSSGVQQSGNNLSGGRFVPNNLPSALS-QIPQGNSHGHSGMTSRGGTSVVGNPGYSSNTNGVGGSIPGILPTFAAIGNRSSVPGLGVSP-ILGNAGPRMTNSV------GNIVGGGNIGRSISSGAGLSVPGL-ASRLNMNANSGSGNLNVQG--PNRLMSGVLQQA----------------------------------------------------------------SPQ---VLSMLGNSYP-AGGPLSQNHVQ------AIGN-------FNSMGLLNDVNSNDGSPFDI-NDF----------------------PQLS-SRPSS---AGGPQGQLG---------------------------------------SLRKQGLS---------------PIVQQNQEFSIQNEDFPALPGFKG-----------------------------------GN-ADYAMDP------------------------------HQKEQLHDNTLSMMQQQHFS-----------------------MGRSAGFNLGGTYSSNRPQQQ------------LQHAPSVSSGGVSFSNINNQDLLSLHGSDVFQSSHSSYQQQGGG------------PPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQ---FRLQQMS-----------------------------------TLGQPFRDQSLKSMQS-QVAP--------------------------------------------DPFGML-----------------------------------------GLLSVIR----------M--------------------SDPDLTSLALGIDLTTLGLNLNSAE-N--LYKTFGSPWSD------EPAK---GDPE----------FTVPQCYY--AKQ---PPPLNQAYFSKFQLDTLFYIFY----------------------SMPKDEAQLY----AANEL-Y-----------------NRGWFYH--REHRLWFMRV-ANME-------PLVKTNAY-ERGSYICFDPN--TWETIHK-------------------DNFVLHCEMLEKRPVLPQH------------------------------------------------------------------------------------------------- [603] 'gi|50915312|ref|XP 468120.1| putative CCR4-NOT transcription complex, subunit 2; NOT2 [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSGLLNSNLNNSASNLQD---STGRPFTGSFSGQSGSVPGGFHHS----GLHNMHGSLNMPNMPGSFSQRNAAMSGLPSSGVQQPGGSMP-GRFASNNLPVGMS-QI----PHGHSGVGSRG-LNVGGGPAFSSSLN-IGGTIQGLSSNLGAGGSRNSVPGMSVSP-SLGNLGPRITGSV------GNIVGGSNIGRNISSG-GLSVPSI-ASRMNLSGNVGSGGLNVQG--SSRMMNGILQQG----------------------------------------------------------------SPQ---MLNMMGSLYPTSGGSLSQNQIQ------GGNNS------LGSMGMLHD--ASDGAPFDM-SDF----------------------PQLT-GRPSS---AGGPQGQYG---------------------------------------SLRKQGVG-------------VNTIVQQNQEFSIQNEDFPALPGYKG-----------------------------------NT-TDYAMEL------------------------------HHKEQLHDN-VPVMQAQQYP-----------------------MSRSVGFNLGSNYPPNR-QQH------------QQGANSV---------------------------------QNAG------------PPNIGLRPLNSPNQTSSLGSYEQLIQQYQQPQAQNP---FRLQQVS-----------------------------------SATQSYRDQSLKSIQGGQTPS--------------------------------------------DPYGLM-----------------------------------------GLLGVIR----------M--------------------NDVDLSSLALGIDLTTLGLNLNSPD-N--LYKTFGSPWSN------EPAK---GEPE----------FHTPACYS--AEQ---PPPLQPIHFQKFQTPTLFYIFY----------------------SMPRDEAQLC----AASEL-Y-----------------TRGWFYH--KEVRVWLTRI-PNVE-------PLVKTPHY-ERGSYGCFDPN--NWETIRK-------------------DNFVLHYDQIEKKPAIPSS--QNVR------------------------------------------------------------------------------------------- [622] 'gi|79338143|ref|NP 563795.2| transcription regulator [Arabidopsis thaliana]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSHGSSHGHSGLTNRG--------------------------------------GLGVSP-ILGNVGSRMTSSM------GNMVGGGTMGRTLSSGGGLSIPSL-GSRLNLAVNSGSGNI---G--QNRMMGGVLPQG----------------------------------------------------------------SPQ---VLSMLGNSYPSAGG-LSQNHVQ------AMNS-------LSSMGLLNDMNSNDTSPFDINNDF----------------------PQLT-SRPSS---AGS-QGQLG---------------------------------------SRLKQGLG-------------ISPIVQQNQEFSIQNEDFPALPGYKG-----------------------------------SS-ADYPMDL------------------------------HHKEQLHENSVLMMQSQQLS-----------------------MGRSGGFNLGGAYTSHRPQQQ------------QQHAQAVSSSGV-----------SLHGSDIFSSSHPPYHSQTGG------------APGIGLRSMNSANSITGMGYDQQLIQQYQHQQNSAQ---YRLQQMS-----------------------------------AASQPFRDVGLKSMQSTQSNP--------------------------------------------DRFGLL-----------------------------------------GLLSVIK----------M--------------------SDPDLTSLALGIDLTTLGLNLNSTE-N--LHKTFGSPWSN------EPSK---VDPE----------FSVPQCYY--AKN---PPPLHQGLFAKLLVETLFYVFY----------------------SMPKDEAQLY----AANEL-Y-----------------NRGWFYH--KEHRLWFIRI-G--E-------PLVKTNAY-ERGSYHCFDPN--SFEIVQK-------------------ENFVLYYEMLEKRPSISQD--SQH-------------------------------------------------------------------------------------------- [512] 'gi|50918465|ref|XP 469629.1| putative transcriptional regulator [Oryza sativa (japonica cultivar-group)] >gi|38000000|gb|AAR070' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSGLLNSNLNNSASNLQD---SSGRPFTASFSGQSGSVPGAFHHS----GLHNIHANFNLPNMPGSLAQRNAAMSGLPSSGVQQPGGSIS-ARFASNNLPVGMS-QL----PHGHSGVSSR--VNVGGGPAFSSSLN-IGGTIQGLSSNLGAGGNRNSVPGMSVSP-ALGNLGPRITGSV------GNIVGGSNIGRNISSG-GLSVPSI-ASRMNLSGNIGSGGLNVQG--SSRMMNGILQQG----------------------------------------------------------------SPQ---MMNMMGSSYPTSGGSLSQNQIQ------GGNNS------LGSMGMLHD--ANDSAPYDM-NDF----------------------PQLT-GRPSS---AGGPQGQYG---------------------------------------SLRKQGVG-------------VNTIVQQNQEFSIQNEDFPALPGYKG-----------------------------------ST-SDYAMEL------------------------------HHKEQLHDN-VPVMQAQQYP-----------------------MSRSVGFNLGSNYPPNR-QQH------------QQGANSV---------------------------------QNAG------------PQNIGLR--SSASQTSSLGSYEQLIQQYQQPQTQNP---FRLQQVS-----------------------------------SATQSYRDQSLKSIQGGQTPP--------------------------------------------DPYGLM-----------------------------------------GLLGVIR----------M--------------------NDADLASLALGMDLTTLGLNLNSPD-N--LYKTFGSPWSN------EPAK---GEPE----------FHIPACYN--AEQ---PPPLQPIHFQKFQTLTLFYIFY----------------------SMPRDEAQLC----AASEL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [548] lcl|Ppa_VIP2_3_1_unnamed_protein_product -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYYPLRHESNANKESMLNGSATSLLDGSANTARPFGASSFTSQSGTTPNFNHTANLQGVHN-QGIYNMQTMPNGLSSRNTGFGG-PSSGTHQSGGSSASGRFSTNSLGVGLSQQLSQGGLYGHSSMTNRTGTSLVGNHSYSSNVN-VGGSGVG-SPGSSSISNR-----MGGSPSQMGSVGPRIVSSV----GGVGLAGGGGLTRALNAGVGVNMQNLNSSRVNMGQLSGSNGIGVQ--------------------------GDLLAMLSRGI-------------------------------------MDPHSSPLMLGVSSMLGNNFSTSPSSNMQGQLY------SANGH------VGVMSPSSVGNGNDGVAFDI-NDF----------------------PQLT-TRQSP---SGNMQGSVG---------------------------------------GLRKQG---------------INALVQQNQEFSIQNEDFPALPGYKG-----------------------------------GN-HDLASEL----------------------------QQHHKDQQHD--LAAMQVQHFL-----------------------MGRSTGFSQGGFYASNRHMLQQQQ---------QQPAGNASEPQHLHA--------GVGGSFSSARGHPSYHSEMVG------------APGSGATQVHRSGVGGALGQYDHSLNYQHQSPSRAGGTFTQQLLQA-----------------------------------GMAGALRDSLKQG---------------------------------------------------------------------------------------------------GLLSVIR----------M--------------------SDPDLTTLALGTDLTTLGLNLNSRE-N--LYKTFSSPWAD------EPIR---GEPD----------FLVPLCY---DQK---APQLQPNHFTKFQDSTLFYIFY----------------------SMPRDEAQIY----AASEL-S-----------------NRGWVFQ--KELSRWLKRA-PNCE-------PMVKTQTY-ERGTFFFLDPT--TMEIGCK-------------------ENFVLHYDMLEKPPQLPA-----------------------------------------------------------------------------QQ------------------- [662] lcl|Ppa_VIP2_4_1_unnamed_protein_product ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SMLNGSASTLLDSGSSARPFASSGYSAQSG--TPFAHHGGNLQGLHNAQASYNMQSVQNSVSSRNQGLGGNPSSGGHQSTGNLQGGRFTSNNKPVDFS---------------------------------------------------------------QMGASGPRISSTVGSIGGGGSLSGGGGLSRSLNAAVQLNAASLGGARVNMSSLNNSGGISVQG--LGRPVNSMLQQGVNMS-SSYNPSGDLLAMISRA-------------------------------------------SPR---AVSLLGSNFSSSPGLSTQGQGQ------LTNGQ------LGSHGLSND--SSDGVPFDI-NDF----------------------PQLT-ARQSG---TSGLQGSAGMVLTVTPKRSYVESERYQNSHRMESAVGPQRCADGNVAAALKKQGVA-------------VNANVQHNQGFSIQSEDFPALSACKGVKSVSGVPQQCRVLSTSKSLRPSLRLTSTRARIADGG-NDSTTEL-----------------------------QHHKEQHEDSLASAMQSQHFT-----------------------MNRSSGFSLGGSYAPHRQLQHQTGGLGSGSIPGAS------------------------------------------------------QIGTGGGHLQRS---GSLASYDQLLQQYHQAQLRAGGAGIQQQQFA-----------------------------------QLARESIKGFQQGGMATPQ----------------------------------------------DRFGLL-----------------------------------------GLLSVIR----------M--------------------SDPDLTTLALGTDLTTLGLNLNSRE-N--LYKTFASPWAD------GPVR---GEPE----------FTLPDCY---VQR---APRLQPGYFSKFPQETLFYIFY----------------------SMPNDEAQMY----AADEL-Y-----------------NRGWFYH--KDHKIWLTRV-LNEI-------PPVTTQTF-ERGAYYFFDHN--TWDTGRK-------------------ENFVLQYEHIEKRPQLPSQ--VK--------------------------------------------------------------------------------------------- [670] lcl|Smo_VIP2_2_1_unnamed_protein_product -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIPTSKRNAGLGGSSSGVHQPTGGLPSGRFASSNLPIGLS-QLSQSSLHGHNSMSNRAGLNVVGNHPLSS-----------------------------------------------------------------------GVPSLSSSRMNLGPIPSGGGLGGGGPASGRAMSPMLQQSVN---TTYSPSGDLLAMISRG-------------------------------------------SISQRYPLKLCHCLDPTSQQIRGRGQMA------SANGQ------LGNLGLGSDGSQNDGAAFDI-NDF----------------------PVLS-NRQSS---GGGLQNPLA---------------------------------------AFRKQG---------------VNSLGQQNQEFSIQNEDFPALPGFKGGN------------------------------------GDLTSEM------------------------------HHKERQHENSMGLMPPQHFGVRYFPLYLIFSGEPITMREGVLQMGRSGGFPLGVSFVARQQQQQQQQQQQQPQQQQHQLSGSSSTAESNLSHMQDSYHSSHGLPASYQMHSSGQPGATGS------------QISLGLRSGSPAVVGSGGLGSYDLMHQYEHHQQPHFRLGAHPQQLT-----------------------------------AVGQPSRELGMRPLQDM------------------------------------------------DRFGLL-----------------------------------------GLLSVIR----------M--------------------TEPDLTTLALGTDLTTLGLNLNSRE-N--LYKTFASPWAE------GPVK---GDPE----------FTLPACYI--QQQ---APRLQSFSVFAL------YRFYCCNVLLMDAVFFSLAILEGYRKSMPKDEAQLY----AANEL-YVLRFLFGFSKVFLVLRSNRGWFFH--KAQHMWLTRV-PNVE-------PLVKTNNY-ERGSYIFFDQN--NWETTRK-------------------ENFVLHYDMLEKAPQLPPP--PPAQS------------------------------------------------------------------------------------------ [636] lcl|Ppa_VIP2_1_1_unnamed_protein_product -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPNTLSSRNAGYGG-PSSAAHQSGGGVSSGRFSINNLGVGLS-QLSQGGLQGQSSMTNRTGSSVVGNHSFSNNVNGVGGSGVG-SPGSSSISNRGSLSGMGGSPSLMGSVGPRLTSSV----GGASLAGGGGLTRALNAGGSVNMQNLNNSRVNMGQFSSSSGIGVQG--PGRPANSLLQQGVNMSSSSYNPSGDLLAMLSRGIKVSCSSTRACCLLLSVSFVSSIVLIYLLMCSLMRHLTLREHKYASPQGVSSMLGNNFSTSPSSGMQGQFH------SANGH------IGGMSPSSVGNGNDGVAFDI-NDF----------------------PQLT-TRQSP---SGSMQGSVG---------------------------------------GLRKQG---------------INAIVQQNQEFSIQNEDFPALPGFKG-----------------------------------GRPYDLFYLLRFVECRCSLSISGVVLTIPQTVYMYLFVQRTSIEGGNI--KIGSEKSKVQ-----------------------MGRSTGFSQGGIYATNRHLLQ------------QQPAGNVSDLQHLHA--------GVADSFSSTRGLSASYHSQTG------------TPGSSATQVHRSGVGGALGQYDQNLNYQHQSPSRTGGTFTQQQHQA-----------------------------------GMTGTLRDSLKQGGSAHQP----------------------------------------------DRFGLL-----------------------------------------GLLSVIR----------M--------------------SDPDLTALALGTDLTTLGLNLNSRE-N--LYKTFASPWAD------EPIR---GEPD----------FVVPPCY---DQK---APQLQPNHFTKFQDNTLFYIFY----------------------SMPRDEAQLC----AANEL-L-----------------NRGWVFH--KELKRWLKRA-PNSE-------PMVKTLTY-ERGTFYFLDPA--TLEMGCK-------------------ENFVLHYEMLEKCPNLPAQ--Q---------------------------------------------------------------------------------------------- [697] 'gi|66809579|ref|XP 638512.1| hypothetical protein DDB0186079 [Dictyostelium discoideum] >gi|60467120|gb|EAL65157.1| hypothetica' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSQYNKDDHDIDHEQQPHPGMMNYANYANPNMNYRPEMINPMINRQGPQHLNQQQNQNQ------QNQQQNFRGQNQNMMGGQNQNNNNNNSSNINNNRVGNNSNINGMPTGGNMATNINNMNMMNNNNNTNNNNNGRPISSSNSQQPPPPPQQQQQPQQPLSRSTPNTPTTSSSPNLQNIPRMNGNVNNA-------------QQNTQQQQQRGNI-NSNGPIIQGMQNYPYNSNNNNNNNINNNN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNNNNNNISSTSPLQKQQGKDNNNNNNNNNNINNNNNNNNNNNFDLNNDFPVLSSTSNKNAQSKNNSNNNNNNQNNNTNNNNNNNSNNNNNNNSNNNNSNNTFSSDENSLHHHLGYDQGHEEYQRKDFNIVDKDNGKYGLL-----------------------------------------GLLSVIK----------N--------------------TDLDISTLSIGIDLTALGLNLNSQG-E--ISNSFGSPWVD------YSIS---RKPE----------YYIPLCYS--TPN---LESPT-FKMNLFTYETLFYIFY----------------------SMPKDVLQLH----AAIEL-Y-----------------DRDWRYH--KEGKIWLTRV-QGTE-------PNI-TSTF-EVGSFFFFDVT--IWETVRR-------------------DNFYIPHDLLETKEVLIAL--VNKAEQQQAAAAAAAAAVQQQQQQQQQQQQQNQQSSPTSPQNN---------------------------------------------------- [579] lcl|Smo_VIP2_1_1_unnamed_protein_product -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSPMLQQSVN---TTYSPSGDLLAMISRG-------------------------------------------SISQRYPLKLCHCLDPTSQQIRGRGQMA------SANGQ------LGNLGLGSDGNQNDGAAFDI-NDF----------------------PVLS-NRQSS---GGGLQNPLA---------------------------------------AFRKQG---------------VNSLGQQNQEFSIQNEDFPALPGFKGGN------------------------------------GDLTSEM------------------------------HHKERQHENSMGLMPPQHFGVRYFPLYLIFSGEPITMREGVLQMGRSGGFPLGVSFVARQQQQQQQQQQQQPQQQQHQLSGSSSTA?------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [228] 'gi|73968699|ref|XP 531676.2| PREDICTED: similar to CCR4-NOT transcription complex subunit 2 (CCR4-associated factor 2) isoform' -------------------------------------------------------------------------------------------------------------------------------------------MRTVRKGHDS--------MVRTDGHTLSEKRNY----------------------------------------------------------------------------------------------------------------------------------------------------------QVTNSMFGASRK--KFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLNTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [550] 'gi|76671652|ref|XP 878731.1| PREDICTED: similar to CCR4-NOT transcription complex subunit 2 (CCR4-associated factor 2) isoform' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------MLKEVA----------------------------------------------------------------------------------------------------------------------------------------------------------QVTNSMFGASRK--KFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLNTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [531] 'gi|76671648|ref|XP 878535.1| PREDICTED: similar to CCR4-NOT transcription complex subunit 2 (CCR4-associated factor 2) isoform' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLNTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [455] 'gi|76671628|ref|XP 869278.1| PREDICTED: similar to CCR4-NOT transcription complex subunit 2 (CCR4-associated factor 2) isoform' -------------------------------------------------------------------------------------------------------------------------------------------------------------MVRTDGHTLSEKRNY----------------------------------------------------------------------------------------------------------------------------------------------------------QVTNSMFGASRK--KFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLNTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [540] 'gi|26346971|dbj|BAC37134.1| unnamed protein product [Mus musculus] >gi|83745108|ref|NP 001032935.1| CCR4-NOT transcription comp' -------------------------------------------------------------------------------------------------------------------------------------------------------------MVRTDGHTLSEKRNY----------------------------------------------------------------------------------------------------------------------------------------------------------QVTNSMFGASRK--KFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QSIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLSTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [540] 'gi|11640600|gb|AAG39297.1| MSTP046 [Homo sapiens]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLNTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [365] 'gi|62652121|ref|XP 576225.1| PREDICTED: CCR4-NOT transcription complex, subunit 2 (predicted) [Rattus norvegicus]' -------------------------------------------------------------------------------------------------------------------------------------------MRTVRKGHDS--------MVRTDGHTLSEKRNY----------------------------------------------------------------------------------------------------------------------------------------------------------QVTNSMFGASRK--KFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLSTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [550] 'gi|29144934|gb|AAH43133.1| Cnot2 protein [Mus musculus]' -------------------------------------------------------------------------------------------------------------------------------------------LDPRDKKIHAYCEERTRLYVRTDGHTLSEKRNY----------------------------------------------------------------------------------------------------------------------------------------------------------QVTNSMFGASRK--KFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLSTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIYI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [558] 'gi|74204187|dbj|BAE39856.1| unnamed protein product [Mus musculus]' -------------------------------------------------------------------------------------------------------------------------------------------------------------MVRTDGHTLSEKRNY----------------------------------------------------------------------------------------------------------------------------------------------------------QVTNSMFGASRK--KFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLSTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVSK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [540] 'gi|74207884|dbj|BAE29072.1| unnamed protein product [Mus musculus] >gi|46395846|sp|Q8C5L3|CNOT2 MOUSE CCR4-NOT transcription co' -------------------------------------------------------------------------------------------------------------------------------------------------------------MVRTDGHTLSEKRNY----------------------------------------------------------------------------------------------------------------------------------------------------------QVTNSMFGASRK--KFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLSTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [540] 'gi|38649289|gb|AAH63105.1| Cnot2 protein [Mus musculus]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------MLKEVA----------------------------------------------------------------------------------------------------------------------------------------------------------QVTNSMFGASRK--KFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLSTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [531] 'gi|12847218|dbj|BAB27481.1| unnamed protein product [Mus musculus] >gi|21312480|ref|NP 082358.1| CCR4-NOT transcription complex' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLSTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [455] 'gi|60334792|gb|AAH90624.1| Cnot2 protein [Mus musculus]' -------------------------------------------------------------------------------------------------------------------------------------------------------------MVRTDGHTLSEKRNY-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIVIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLSTSG-----------------------------------------------------------------------------------------------KTTSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [499] 'gi|53130862|emb|CAG31760.1| hypothetical protein [Gallus gallus] >gi|61098330|ref|NP 001012826.1| hypothetical protein LOC41785' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFGASRK--KFVEGVDGDYHDENMYYSQSSMFPHRSEKDMLA--SPST-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TQLPSHVTPTTGV----------PTMSLHTPPSP----SRGILPMNPRNMMNHSQVG--QGIGIPSRT--NS--------------MSSS--GLGS-----------------PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGM------NNSLSS-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPASEQSQDFSIHNEDFPALPGSSYKDPTSSNDDN---------------------------------------------------------------------------------------------------------------------------------------------KSNLNTSG-----------------------------------------------------------------------------------------------KTSSSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPHLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [520] 'gi|49115752|gb|AAH73075.1| LOC443622 protein [Xenopus laevis]' ------------------------------------------------------------------------------------------------------------------------------------------------------------GRVGTAILLLRDKKIH----------------------------------------------------------------------------------------------------------------------------------------------------------AVTYSMFGASRK--KFVEGVESDYHDENMYYSQSSMFPHRSEKDMLASPSPSA-----------------------------------------SGQLSQFGASLYGQQSALGLPMRGM-SNNTPQLNRSLSQG---TPLQNHVTPTTGV----------PTMSLHTPPSP----NRGILPMNPRNMMNHSQV----GIGIPSRT--NN--------------MSSS--GLGS-----------------PNRSSPSIICMPKQPPSRQPFTVNSMSGFGMSRNQAFGL------NNSLSN-------NIFNGTDGSENVTG--LDLSDF----------------------PALA-DRNRREGSGN-PTPLIN---------------------------PL--AGRAPY------VGMV-------------TKPASEQSQDFSIHNEDFPALPGSSYKDPTSGNDDS---------------------------------------------------------------------------------------------------------------------------------------------KSNLNTPG-----------------------------------------------------------------------------------------------KTASSTDGPKFPG-------------------DKSSTTQNNN---QQKKGIQVLPD-------------------------------GRVTNIPQGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGNDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLGRYGEDLLFYLYY----------------------MNGGDVLQLL----AAVEL-F-----------------NRDWRYH--KDERVWITRA-PGME-------PTMKTNTY-ERGTYYFFDCL--NWRKVAK--------------------EFHLEYDKLEERPQLPST--FNYNPAQQAF------------------------------------------------------------------------------------- [541] 'gi|47225772|emb|CAF98252.1| unnamed protein product [Tetraodon nigroviridis]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFGARKKFVEFVEAVDNDFPDESMYYNQPSMFPHRSDKDVSF--PPTPPYRPVVPSNLHSVFVTFPSDAFLSLAVVVKSAVAAWCKFVRSTKCTWLLGEGHGKQHTAAKPKSNS-RHAATQSYHSYNRG------PHHVPPYSSISEQVGTGAADPVSTPAFAPDPLWCLNRGTLPMNSRNMLNHSQVG--QGIGMSGRT--NS--------------MGSS--GLGS-----------------PNRSSPSIICMPKQQPARQPFTINSMSGFGMNRNQVFGM------NNS-----------IFNGTDGSENITG--LDLSDF----------------------PALA-DRSRRDGTGN-PTPVLN---------------------------PL--AGRAPY------VGMV-------------TKPSSEQTQDFSIHNEDFPALPGPNYKDATLNNDES---------------------------------------------------------------------------------------------------------------------------------------------KTNLNSTS-----------------------------------------------------------------------------------------------KSTSSADGPKFPG-------------------DKTASAQNNN----QKKGIQVLPD-------------------------------GRVTNIPSGMVTDQFGMI-----------------------------------------GLLTFIR----------A------------------AETDPGMVHLALGSDLTTLGLNLNSPE-N--LYPKFASPWAS------SPCRP--QDID----------FHVPSEYLTNIHI---RDKLAAIKLARYGEDLLFYLYY----------------------MNGGDLLQLL----AAAEL-F-----------------NRDWRYH--KEERVWITRA-PGME-------PTLKTNTY-ERGTYYFFDCH--NWRKVAK--------------------EFHLEYDKLEERPHVPSI--FNYNPAQQAF------------------------------------------------------------------------------------- [569] 'gi|71001530|ref|XP 755446.1| hypothetical protein Afu2g11130 [Aspergillus fumigatus Af293] >gi|66853084|gb|EAL93408.1| NOT2 fam' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDGRAIWLALWACLLEIAPSLSIHCFVTFALINHYFSSGPGPQPLRGMSGFPAQQQAQARNATLASARLPNGKLAWTIADQECRQGAAPTGISTYLLAGHQDYKEISSATLELWGHLRKALVGDRSLLHLLISHF----------------------PSLSGAPQQSQTPNPGLVWGQRALQQTPQRQQHPTSQAPSRAPQTQSHHPQQQSQPSHDDVFLSGAQFANRLDDFRNGGQGISGQLGGSAQPQTGNIDEFPPLGRNVAADLGQDRRESLMQS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGLGNFGGTMPFTGANQNQSAQNRTMIGGSINGQDTSRMMSPTNAGSTAIGTSRSPVNQGANGVPGSEKEDLNVTTMANQHNFTEQQQAQQ-----------------PQAAAGEAQDVTAAAQSTEQQPLAQMSELDRFGLA-----------------------------------------GLLRMIH----------S--------------------DSPDVASLAVGQDLMTLGLDLNQPE-P--LHTSFASPFVA--SM--SAVP---MEQN----------FSLPACYN--VAN---IQPLQ-TRIPSFSDETLFYIFY----------------------SMPRDIMQEL----AAEEL-M-----------------GRKWRYH--KIERCWLTRD-ETYP------GPVDVEPRVSERGVYLIWDPT--TWKKIRR--------------------EFILRYEDLDNRLDHNRG--LARPL------------------------------------------------GFPHQAS----------------------------------- [565] 'gnl|CMER|CMJ013C similar to CCR4-NOT transcription complex, subunit 2; NOT2' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPTNAGAGGGQGLTTSGSAGWSPPLLGRFQSFAQQLHGPSALASGALATTPPASAGPANDSN---------------------------------------------------------AGFGSGPLNASAAAATTTTTATTSAGLTVSPAL------LTSGSPLFPPLGQTPPASSESHMGQQTAVFDLTDF----------------------PALGVGMMLNHGQGATSQASLG-----------------------------ESANNSGAGNAMMGYGRV-------------LGSPYSMSQRVELTARDFPALGSKLQNPATLGVHSRLNPSLG-------------------------------------------------------------------------------------------------------------TIGGNVTAGAVPNSFVAGTGAGAGNGASGTGALAAMSIPPASSTSTVGFLGAPSATGSSTAPTSLPPYAAGPAPATPSAPPPLPSAPLATPPSLPTLASLATTTTTTTSSASSSSGPAGSRSDAPEWSTRLNAEPNPSARLGMGQFSTEAGARSGVFSAAGTAAASATSMALNLLNLAHGSGTAS-------------------------------GQAAGAENGTWGSPYGML-----------------------------------------GLLATIR----------S--------------------QNADLSLLAHGVDLTALGLNLNSAE-P--LYPSFSSPFGPDLSRNGAPLED--TRTDETVGNSLDAFAALPSCY---SAC---TVSLKPAHFKRFSTETLILIFY----------------------GYPRDLVQVY----AALEL-F-----------------NRGWRYH--KELKTWFARSGPGVE--SLAPDPSDAKSISSSGNQLVYFDLH--NWSLKPF-ANAGT--------LPNLMRGFLTEAELREMMAACK--------------------------------------------------------------------------------------------------- [614] 'gi|23508488|ref|NP 701157.1| hypothetical protein PF11 0297 [Plasmodium falciparum 3D7] >gi|23496222|gb|AAN35881.1| hypothetica' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MENNNINLNSNKEKNLNISSTYKKCFNKDDNVH------NISDNFKDDNKSVNLFLRKNEQHVDCPEIILDIEN----------------------IEHTDDKKGKLCIDSSHKKPDENIKKEHQNNEHDMLEKIHKGNHIDNIFSDNKNEINFISEENKKKNIY-------------EQDTTYGDEYLMSTEHNDAHINNDKDKICTCNE------------------------------------------------------------------------------------------------------------------------------------------------HNDAHINNDKEKNFTCYEHNGAHINNDKEKNFTCYEHNEEKIIIQKNVEVSDKKKNFNTTDKEYINKINNKNCNIQDNHHDVSHEKNMLINENVRNINDTFS-KTINSKFPKEEKRNEIKKKNGNNQKTIINDDVVYDINEEHTSADEKIEKLRNDDILKSGDILKNNKILSCEEEGEEEKNELSLEEILYETTERSKSYNRKNYGLL-----------------------------------------GILKVIK----------M--------------------TDPNLNILAIGSDLTTLGLNLNSPN-Y--ICTSVSSPFSE------NPIE---NEED----------FIKPVSY---LNT---KFQIRLSLLLKLQTETLFYIFY----------------------NLPRDVLQAY----AASEL-Y-----------------IRKWIYH--IIYKKWFTPN------------NATSTINLEKCASWIYFDPL--TWSKKTY-------------------NNYLNVKDDIMNVEDVTKC--IEQIIKLQSYYNIHQQNI----------------------------------------------------------------------------- [559] 'gi|47221630|emb|CAF97895.1| unnamed protein product [Tetraodon nigroviridis]' ---------MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQK-----EKYEADLKKEIKKLQRLRDQIKTWLASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQREKEETGQWLTNTIDTLNMQVDQFESEVESLSV---------QTRKKKGDKE-KQDRIEELKRLIERHRFHIRMLETILRMLDNDSIPVDSIQKIKDDVEYYIDSSQDPDFEENEFLYDD-LDLEDIPAALVATSPSGQGNMEDEMYL----HSSSTPTSTTSSSPIPPSPATCTAENSEED-------------------------------------------------------------------------------------------------------KK-RGRSTDSEVSQSPVKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGVPAVPTSSSLIGSFSSAVQQHQHPPAQQPPPSQQPQQQQQQQQQQQQQQQQQQQQPQPQPQQQPQPQQQPPPSQSKA-PPQANNTPSPPGNPLLTASTAPSLPTPSTPVSSASSSQSQSTPVPTPSLGLGLGLGLGKVGLTGTSSAN------QMAALGLGGHPSPLNTMAGLISGSTPAPYAQAAAS----------------------GGLGLNSSTQ---SAISSESSTSIPTSGSSGATTNGAGTGLGLLGTSPAHNSLSGSILGLVPGQSAAPG-------------AAQVAPSS-VNSA-----PGVVGMLGSNGGNVGVVGGVGV-----------------------------------------------------------------------------------------------------------------------------------------NAVPARPPSGLKQNGSTSY----------SAVVAESSAESALSTPGQSQSSQ------------PSSLS---SSTSQ------PLDN-----GPSLISSITL-PPS-SPSPSFSDSTPGGGSL-----------LNGPHSYTQASESLKA-PEPLS------------SLKAMAERAALGSGLDGEI--------------------------------------------------------------ANLHLTE----------R--DIFSGSSAAPGTPAA-PQPSVSEVSIPPSLGVCPLGPTPLPKDQL-YQQAMQESAWTH------MPHP---SDSERIRQYLMRNPCPTLPFHHK-VPP---FHSDSIEFYQRLSTETLFFIFY----------------------YLEGTKAQYL----SAKAL-K-----------------KQSWRFH--TKYMMWFQRH-E--E-------PKTITDEF-EQGTYIYFDYE--KWGQRKK-------------------EGFTFEYRYLEDRDLQ---------------------------------------------------------------------------------------------------- [934] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-587 589-593 604-608 616-621 625-637 642-643 649-650 653 657-678 683 689-691 694-695 701-743 746-762 769 774-778 787-1309 1313-1314 1318-1351 1362-1371 1373-1390 1397-1398 1406-1442 1448-1584; END; BEGIN MacClade; Version 4.0 87; LastModified -1061732437; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '8' '490' '1' all; EditorPosition '76' '-6' '901' '1613'; TreeWindowPosition '46' '6' '985' '1630'; ListWindow Characters closed Geneva '9' '50' '10' '273' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '52' '30' '968' '1620'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '807' '53' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '50' 001011001; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; 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