#NEXUS [MacClade 4.08 registered to Tomoaki Nishiyama, National Institute for Basic Biology] BEGIN DATA; DIMENSIONS NTAX=59 NCHAR=743; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|22330928|ref|NP 566344.2| HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin:ferredoxin oxidoreductase [Arabidopsis thaliana] >gi' --------------------------------------------------------------------------------------------------------------------------------------------------MALSMEFGFSIGSCFKAPNPPVLISASPNKINFTLRRRKKRFLLRV-------------SAVSYKEFAESALEETRK-RI---VLEPSHL-QEKYS--------------------SMTGLDGKTELQMLAFKSSKIRL-LRSMAIENE-------------TMQVFDFAGFMEPEYDTPIFCANFFTSTNVNIV--VLDLNPLHQLTDQTD-YQDKYYNKIMSIYHKYAETFPWGGKLTGESIKFFSPLVMWTR----FSSSKEKHKALFSAFLEYYQAWLEMTIQVRE-EMEPSHVRANCEAQHKYLTWRAQK-------------------------DPGHGLLKRLVGEAKAKELLRDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDK---------------------------RSIIGKSYETRPWDLTGQFIG------------------------------------------------------------------------------------------------------------------------------------------------------------ [329] 'gi|30680787|ref|NP 850996.1| HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin:ferredoxin oxidoreductase [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------MALSMEFGFSIGSCFKAPNPPVLISASPNKINFTLRRRKKRFLLRV-------------SAVSYKEFAESALEETRK-RI---VLEPSHL-Q--YS--------------------SMTGLDGKTELQMLAFKSSKIRL-LRSMAIENE-------------TMQVFDFAGFMEPEYDTPIFCANFFTSTNVNIV--VLDLNPLHQLTDQTD-YQDKYYNKIMSIYHKYAETFPWGGKLTGESIKFFSPLVMWTR----FSSSKEKHKALFSAFLEYYQAWLEMTIQVRE-EMEPSHVRANCEAQHKYLTWRAQK-------------------------DPGHGLLKRLVGEAKAKELLRDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDK---------------------------RSIIGKSYETRPWDLTGQFIG------------------------------------------------------------------------------------------------------------------------------------------------------------ [327] 'gi|21618130|gb|AAM67180.1| unknown [Arabidopsis thaliana]' ------------------------------------------------------------------------------------------------------------------------------------------------------MEFGFSIGSCFKAPNPPVLISASPNKINFTLRRRNKRFLLRV-------------SAVSYKEFAESALEETRK-RI---VLEPSHL-Q--YS--------------------SMTGLDGKTELQMLAFKSSKIRL-LRSMAIENE-------------TMQVFDFAGFMEPEYDTPIFCANFFTSTNVNIV--VLDLNPLHQLTDQTD-YQDKYYNKIMSIYHKYAETFPWGGKLTGESIKFFSPLVMWTR----FSSSKEKHKALFSAFLEYYQAWLEMTIQVRE-EMEPSHVRANCEAQHKYLTWRAQK-------------------------DPGHGLLKRLVGEAKAKELLRDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDK---------------------------RSIIGKSYETRPWDLTGQFIG------------------------------------------------------------------------------------------------------------------------------------------------------------ [323] 'gi|62149358|dbj|BAD93479.1| phytochromobilin synthase [Lycopersicon esculentum] >gi|62149356|dbj|BAD93478.1| phytochromobilin s' -------------------------------------------------------------------------------------------------------------------------------------------------------MECFSSLGWFCISNPSFIGLKSKKK--YSLSRKCRSFNEVGSKCVRMSYTENESSGVSYKKLIHFALEETNT-HT---LLSPSPL-QEKYS--------------------SLLSMDDKTELQMLSFEAHKIRL-LRSLCIEGTD------------GMQVLDFAAFPKPEFDLPIFCANFFTTAKMNII--VLDLNPLHDIMDQED-YKEKYYKDLITLGLKYSKLLPWGGKLTSESLRFFSPIVIWTR----FSSSPHNHSVLFSAFKDYYQAWLGLMDRSEG-ETDASQIACNCEAQHRYLTWRSEK-------------------------DPGHGVLKRLIGEDLAKDVITKFLFNGVNELGNKTFLDYFPEYRCEDGKVNEK---------------------------RSMIGKSFENRPWNARGEFIGDRVEIV------------------------------------------------------------------------------------------------------------------------------------------------------ [342] 'gi|57900463|dbj|BAD87875.1| putative phytochromobilin synthase [Oryza sativa (japonica cultivar-group)]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSSGGVGGGSLGAGLLYHKFVSFALEETRL-RT---TLTPHPS-QEKFK--------------------SIKPNDDNTVFNALSFSAPKIRL-LRSLTIEKKN------------SYQVLDFAAFSEPEYDLPIFCANVFTTHAQSIV--VLDLNPLYDTTVHKD-YKDKYYRSIMPLVHKYNELLPWGGKITSESLKFFSPIVIWTI----FESTEHNHHVLHSAFVDYYKVWLELMDQAIK-ENNKATIARNQEEQHKYLTWRAEK-------------------------DPGYPLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKK---------------------------RSMIGKSFETRPWDANGEFIGDAEAQ------------------------------------------------------------------------------------------------------------------------------------------------------- [301] 'gi|50904485|ref|XP 463731.1| B1147A04.9 [Oryza sativa (japonica cultivar-group)]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSSGGVGGGSLGAGLLYHKFVSFALEETRL-RT---TLTPHPS-QEKFK--------------------SIKPNDDNTVFNALSFSAPKIRL-LRSLTIEKKN------------SYQVLDFAAFSEPEYDLPIFCANVFTTHAQSIV--VLDLNPLYDTTVHKD-YKDKYYRSIMPLVHKYNE------------------------------------------------VWLELMDQAIK-ENNKATIARNQEEQHKYLTWRAEK------------------------------------------DLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKK---------------------------RSMIGKSFETRPWDANGEFIGDAEAQ------------------------------------------------------------------------------------------------------------------------------------------------------- [240] 'gi|49472889|gb|AAT66259.1| phytochromobilin synthase [Zea mays]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSGGGGLGSGCSYQKFVHFALEQTRH-RS---TLVPHPS-QEKFR--------------------FIKANEDNTVLNALSFSTSKIRL-LRSLTIEQKN------------SVQVLDFAAFSRPEYDLPIFCANAFSSPARSIV--VLDLNPLYDTTEHKD-YREKYYRALMPLVHKYSELLPWGGKITSESLRFFSPIVIWTV----FEPSEANHQALYSAFVDYYMVWLEFMDGAVR-ESSKEKIDRNREAQHKYLTWRAEK-------------------------DPGYPLLKKLIGESGAKDLVREFLFEGVGSLGTKSFLEYFAEYAQEDGTVNKK---------------------------RSMAGKSFGTRPWDAHGLFVGDAVDG------------------------------------------------------------------------------------------------------------------------------------------------------- [297] lcl|Smo_HY2_9_1_unnamed_protein_product ?RTSKRAMWVAQLCSDAGITRCYVYKQGVSGWRLDPTVLPYDRYEQGDAPPEPLSFEVETYNRDAAEIELRQKGFIVTIQTPADMGLSGAWYQFTLCTSSCPGKANKSLALDVLKDFAHTSRGHHPAWDDLGSTTTRGLGFCCYGASRDGRCRLLPAGSYISSGSKDLPCRGEIEGRDGICFGESMSRNRSFQVLRQRQRLVLLRAAALYDKFVDFAVDSVSRFEQ---LVEPDEIVKNHVG--------------------EILAEDRRTVIKSHAYQSKKIRM-LRSAVIDGGE------------AMQVFNMAIFPRPCFDLPIFCADFFTSSSRSIF--VLDLNPLYNVEADKA-YKDKYYSELLPLVKKHSKLLPWGEKLTGESLQFFSPIVLWSK----PESNKEVDEAIYLAFQDYIMAWTRIIGAATS-ETDIDAICRNKVAHHRYLTWRASK-------------------------DPGRPVLRRLLGEDRCEHYIHEFLFNGLHDLGTSSFTEYFPEY----------------------------SNGVCYVLFRGYEALSSESAAYHSTDDYEPDREAFLDLIFTFAKQIKLEAGHEYGQSRVSLLNIMRTVVSDDYYVVDKWTQFVITGSGAAERKARTEAGQRE-----------MPPLLGRLCSRPRSGEI-----GSRSSSSTREIQQQP------------------------------------ [594] lcl|Smo_HY2_12_2_unnamed_protein_product ------------------------------------------------------------------------------------MGLSGAWYQFTLCTSSCPGKANKPLALDVLKDFAHTSRGHHPAWDDL--------------------------------------------------------------VFRQRQRLVLLRAAALYDKFVDFAVDSVSRFEQ---LVEPDEIVKNHVG--------------------EILAEDRRTVIKSHAYQSKKIRM-LRSAVIDGGE------------AMQVFNMAIFPRPCFDLPIFCADFFTSSSRSIF--VLDLNPLYNVEADKA-YKDKYYSELLPLVKKHSKLLPWGEKLTGESLQFFSPIVLWSK----PESNKEVDEAIYLAFQDYIMAWTRIIGAATS-ETDIDATCRNKVAHHRYLTWRASK-------------------------DPGRPVLRRLLGEDRCEHYIHEFLFNGLHDLGTSSFTEYFPEYREVLIGEKNVVGTPRGPSIWRRGLCLMACNGVCYVLFRGYEALSSESAPYHSTDDYEPDREAFLDLIFTFAKQIKLEAGHEYGQSRVSLLNIMRTFLTDSSY-----------------SRCSQEGGQRSSLSMKEWRETLAPPLLGRLCSRPRSGEIASPSSSSSSSSSSREIQQQPDWKRHGLNTLGSWKRAIANSNANKTRCRRSLHESTP [511] lcl|Ppa_HY2_5_1_unnamed_protein_product M-------------ASQFTEETWPWRRQMFALSSSGLVIGIGREGGGGEPAMALVSSRCGAGGHSLCSRQALETNKVNGRSGSTVIVGGALWSSIGKSCTGAACFVPSAVCVRRGRFVCHGNAWVLRRDQKGGPRGVCLHGDKHTRARNVEIAALNRKDLDACGS--------------------------------------GVAEGLFDKFLEYAVRAVEQ-RA---DISPLPC-QGEFQ--------------------NMVAADGQSVVKNVAFESTKFRL-FRCATINASNRAFYVKLRDCVGRVQVLNVAICARPEYDLPIFCADFFSTARMNIV--VLDLNPLYNTEQRPE-YKEKYYSRILPLGNKYAE------------------------------------------------AWLDMADKANP-SNDAYEIAENQESHHRYLMWRATKFSASNNPLLLVYRFLLNSCRLPDMQDPGRYLLMRLFGEPLCERYITEFLFNGVNTLGTKTFLDYFPEYRGVDGSIIKQ---------------------------RSVVGKAYAERPWNKDGTFAPMLHEV------------------------------------------------------------------------------------------------------------------------------------------------------- [436] 'gi|13751784|gb|AAK38589.1| phycoerythrobilin:ferredoxin oxidoreductase [Nostoc punctiforme] >gi|23127198|ref|ZP 00109073.1| COG' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNSERSDVTLYQPFLDYAIAYMRS-RL---DLEPYPI-PTGFESNSAVV--------------GKGKNQEEVVTTSYAFQTAKLRQ-IRAAHVQGGN------------SLQVLNFVIFPHLNYDLPFFGADLVTLPGGHLI--ALDMQPLFRDDSA---YQAKYTEPILPIFHAHQQHLSWGGDFPEEAQPFFSPAFLWTR----PQETAVVETQVFAAFKDYLKAYLDFVEQAEA-VTDSQNLVAIKQAQLRYLRYRAEK-------------------------DPARGMFKRFYGAEWTEEYIHGFLFDLERKLTVVK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [255] 'gi|67920692|ref|ZP 00514211.1| Ferredoxin-dependent bilin reductase [Crocosphaera watsonii WH 8501] >gi|67856809|gb|EAM52049.1|' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTLYQPFLDYAISLMQD-QL---SLQPYPI-PEGFERKEEMT--------------GKGKRQQRVVTSSYAFKSPKLRQ-IRAAHVQGGS------------SLQVLNFVIFPQLTYDLPFFGADLVTLPGGHLI--ALDMQPLFHDK-A---YQQQYTEPILPLFKSHQQHLPWGGDFPEEAKPFFSPAFLWTR----PQETEAVITRVFSAFKDYLQAYLNFVEQAKP-ITDSQRLEDILQAQRRYIAYRADK-------------------------DPARGMFTRLYGQAWTEEYIHGFLFDLERQMVTV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [246] 'gi|34223769|gb|AAQ63054.1| PebB [Fremyella diplosiphon]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRSE-AKLTLYQPFLDYAIALLQE-RL---NLQPYPI-PTGFESKQATV--------------GKGKHQEEVLTTSYAYQSSKLRQ-IRAAHVQGGK------------SLQVLNFVIFPHLNYDLPFFGGDLVTLPGGHLI--ALDMQPLFRDDLD---YQAKYTQPILPIFQTHQQHLPWGGDFPEEAQPFFSPAFLWTR----PQQTELVETHVFAAFKDYLNAYLDFVDQAQP-ITDSKHLAEIEQAQLRYLRYRAEK-------------------------DPARGMFTRFYGTEWTEEYIHGFLFDLERKLTSAIK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [255] 'gi|71677063|ref|ZP 00674802.1| Ferredoxin-dependent bilin reductase [Trichodesmium erythraeum IMS101] >gi|71669774|gb|EAO26445.' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTATNNIVNLYQPFLDYALTKLKE-EL---ELQPYPI-PSGFEHKVAMT--------------GKGKKQQEVQTTSYAHCSPKLRQ-IRAAHVQGGS------------ALQVLNFVIFPHLNYDLPFFGADLVSLPGGHLI--ALDMQPLFRDNLQ---YQKKYTEPIWETFQKHQKYLPWGGDFPEEATPFFSPAFLWTR----PQKTELVETRVFEAFKDYLQAYLIFVKQTEQ-ITNSEKLAEIKEAQLRYLRYRAEK-------------------------DPARKMLTRFYGHEWTEEYIHGFLFDLERKLALNPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [256] 'gi|62318103|emb|CAH25338.2| ferredoxin oxidoreductase precursor [Guillardia theta]' -----------------------------------------------------------------------------------------------------------------MVARAVLSFVALFGAAHAFQLGTPVRHGLSSSSSPLLRTCLHRSASSSAPTVSPRLRSLRMADEARAVGSRDSGRHMEDTSERSEAVSDI------YKPFWEWAAKTIKE-RLG-DDLVSYPI-PDGYLRKEAMV--------------GKGKRESLAWTQSYGYQTKKMRQ-IRAAHVNGGA------------SLQVLNLVFFPHMNYDLPFLGLDLVTLPGGHLI--AIDMQPLFQTE-E---YKKKYAEPCMDMYQKHVKNLPWGGDFPEEAKQYFSPVFLWTR----PQEDKQVETYVFEAFKDYINKYLDFVEAAKP-VTDPDHLARIRERQLSYLQYRAEK-------------------------DPARGMFTRMYGPEWTERYIHGFLFDLEEKMESGEYKTGELLQCSDPLNFQPTPL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [356] 'gi|35211825|dbj|BAC89202.1| phycoerythrobilin:ferredoxin oxidoreductase [Gloeobacter violaceus PCC 7421] >gi|51316324|sp|Q7NL65' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTLYEPFLERAQQVLTR-RL---ELAPYPI-PVGFERKEALV------------------RGEAVVTTSTAWQSPKLRQ-IRAAHVQGGG------------ALQVLNFVISPRLEYDLPFFGADLVTLPGGHLI--ALDMQPLFRDDPA---YQAKYTEPIVPLFEAHRAHLEWGGDFPEEARPFFSPAFLWTR----PKETGTVETRVFAAFVDYLNAYLDFVERAEP-VTHPEGLAAVERAQLRYLHYRAEK-------------------------DPARGMFRRFYGPEWTEEYIHGFLFDLERRREAVHR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [245] 'gi|33635538|emb|CAE21862.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9313] >gi|33863954|re' -----------------------------------------------------------------------------------------------------------------MK------------------------------------------------------------------------------PSRLSSLDPVKMPEWRWAPFLSHAINAF-I-PL---KPEPYPV-APEFLQREGKT--------------GSKSQPIRVTTCTWACRTKKFRQ-VRAACVEAGR------------SASVLNFVINPYHTFDLPFFGADLVTLPSGHLL--ALDLQPAITSDER---HTKQVWERLMPIFEHWRVHLPEGGPIPEEAKPYFSPGFLWTRLPLSIEGNQLIDEVIMPAFKDYLNLYLDLVEMAEE-VSP-QRAFKLLEGQKRYLSYRAKK-------------------------DPARAMLARFHGHQWTESYIHNVLFDL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [257] 'gi|88807837|ref|ZP 01123348.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. WH 7805] >gi|88787876|gb|EAR19032' -----------------------------------------------------------------------------------------------------------------M-------------------------------------------------------------------------------MQRSNSLDPISLDGWRWEPFLMEAVSGL-K-SL---NPKPYPV-EPVFLDQRDSV--------------GSASRPVQAHTQVWACSTDKCRQ-IRAACVEAGS------------AASVLNLVINPRTSYDLPFFGADLVTLPNGHLI--ALDLQPALKTDRL---HTEAVWEQLTPIFQRWRDRLPGGGPIPEEAEPFFSPCFLWTRLPLGPEGDALIKDVVFPAYLDYLTLYLDLMKNADP-VSN-ERESRLLDGQRRYTTYRAEK-------------------------DPARGMLGRFHGKEWTERLIHEVLFDLH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [257] 'gi|72002855|gb|AAZ58657.1| phycoerythrobilin:ferredoxin oxidoreductase PebB [Prochlorococcus marinus str. NATL2A] >gi|72383005|' -----------------------------------------------------------------------------------------------------------------MQ------------------------------------------------------------------------------IIRNNSQDPISISNWRWACFLDETIKAF-S-TF---QTRPYQI-DNDFLFRESFF--------------GSSSNPKKVILETWGLKMEKIRQ-ARCACLQAGE------------ITSVMNLVISPLNNYDLPFFGADFVTLPNGHLI--ALDLQPALKDDIN---HTQHVWNKLKPIHAHWQSKIPSGGDIPSDARQYFSPAFLWSRIPLGEEGDNLITQTIKPAFDEYLNCFFDLLRDAKI-TSK-ERSFQLLNGQKKYMRYRAEK-------------------------DPARGMLRSFFGEVWTESYINNILFDLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [258] 'gi|8745185|emb|CAB95701.1| hypothetical protein [Prochlorococcus marinus] >gi|28380111|sp|Q9K4U5|PEBB PROMA Phycoerythrobilin:f' -----------------------------------------------------------------------------------------------------------------MI------------------------------------------------------------------------------IKRDNSLSKIDLRDWIWTPFFNDLVDKL-S-VF---EIEPYPV-SHDFLSKESIT--------------GSRRNPVHVTTLTWAAKFEKIKQ-VRLACIKGGE------------SLSVFNLLIHPLNDYDLPFFGADFVTLPNGHLL--ALDLQPALKLDNI---HTENVWPRLIPLHDHWQSLLPSGGEIPKEAEPYFSPGFLWSRLPLSKESDNIISEILRPAFGEYLSLYIELLHIAKP-LKK-ERALKILEGQKAYINYRSTK-------------------------DPARAMLCRFYGKEWTEDYIHKVLFNI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [257] 'gi|33633331|emb|CAE08536.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. WH 8102] >gi|33866553|ref|NP 898112.' -----------------------------------------------------------------------------------------------------------------MSI-----------------------------------------------------------------------------DLRASSLDPVQIPGWRWQPFLDEASAAL-K-PF---NPSPYPI-AETFLQKEGST--------------GSKAKPVPVTTATWACSTDKLRQ-VRCACVEAGM------------AASVLNFVINPSCRFDLPFFGADLVTLPNGHLL--ALDLQPVDKADPD---HTQPVWERLMPLFERWQAELPDGGPIPEEAQPYFSPAFLWTRIPLGEEGDELIERVIRPAFIDYLQLYLNLVAEAEP-VSD-DRAELLLSGQKRYTAYRAEK-------------------------DPARGMLTRFYGSEWTESYIHGVLFDLEDAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [262] 'gi|15021777|gb|AAK77916.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. WH 8020] >gi|28381383|sp|Q02190|PEBB' -----------------------------------------------------------------------------------------------------------------MT------------------------------------------------------------------------------NQRFKSTDPVNIEGWSWQPFLEDAIKRL-E-GL---NVEPYPV-PDRFLQREDQT--------------GSKSKSIPVTTATWACKTEKFRQ-VRAACVSAGS------------AASVLNFVINPKSTYDLPFFGGDLVTLPAGHLL--ALDLQPAIKTDEV---HTTHVWDRLIPIFERWRDQLPYGGPIPEEAQPFFSPGFLWTRLPLGEEGDELIQSIVRPAFNDYLDLYLELAASAER-VTD-ERSEVLLQGQRKYTDYRAEK-------------------------DPARGMLTRFHGSEWTEAYIHTVLFDL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [257] 'gi|78196433|gb|ABB34198.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. CC9605] >gi|78211974|ref|YP 380753.1|' -----------------------------------------------------------------------------------------------------------------MTL-----------------------------------------------------------------------------PLRTTSLDPVQIPGWRWQPFLDTAVAAL-S-SL---QPDPYPI-AERFLQKEGST--------------GSKAKPVPVRTATWACSTEKLRQ-VRCACVEAGA------------AASVLNFVINPSSRFDLPFFGADLVTLPNGHLL--ALDLQPVDKTDPD---HTGPVWQRLMPLFERWRAQLPDGGPIPEEAQPYFSPAFLWTRIPLGEEGDALIDRVIRPAFADYLQLYLALVEEAQP-VDH-ERAAHLLLGQKRYTAYRAEK-------------------------DPARGMLTRFYGSEWTESYIHGVLFDLEEATATSLSPQGS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [271] 'gi|84519099|ref|ZP 01006448.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9211] >gi|84513848' -----------------------------------------------------------------------------------------------------------------MK------------------------------------------------------------------------------RERNNSLDPLEISEWRWSEFLDDAIKAL-E-LF---DIEPYPI-PEEFLTKEETI--------------KFKNNQIKVKALTWACRTTKIRQ-ARAACIEAGP------------AASVLNLVINPFHNFELPFFGADFVTLPSGHLL--ALDLQPVLKKDEI---HNQKVWSKLIPIHDHWQSLLPSGGPIPQEAETFFSPGFLWTRLPLDDQGSKLISKVIRPAFQEYLTLYIDLISDAQE-VSK-ERSLEILSGQKAYINYRAEK-------------------------DPARGMLARFFGKDWTEQYIHKVLFDL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [257] 'gi|154564|gb|AAA27344.1| homologous to ORF236; ORF257' -----------------------------------------------------------------------------------------------------------------MT------------------------------------------------------------------------------NQRFKSTDPVNIEGWSWQPFLEDAIKRL-E-GL---NVEPYPV-PDRFLQREDQT--------------GSKSKSIPVTTATWACKTEKFRQ-VRAACVSAGS------------AASVLNFVINPKSTYGLPFFGGDLVTFPAGHLL--ALDLQPAIKTDEV---HTTHVWDRLIPIFERWRDQLPYGGPIPEEAQPFFSPGFLWTRLPLGEEGDELIQSIVRPAFNDYLDLYLELAASAER-VTD-ERSEVLLQGQRKYTDYRAEK-------------------------DPARGMLTRFHGSEWTEAYIHTVLFDL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [257] 'gi|13751856|gb|AAK38598.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Nostoc punctiforme]' -----------------------------------------------------------------------------MLNSQSPLRNVALFLINETCMIAITYFHARVNKSCSM-----------------------------------------------------------------------------------------------YKPFLEFLEKELFQ-RF---DLQSRVI-PPGLEFK------------------VSDRGRNPATIRSWCYQSQELRK-IRYTYIDAGE------------SAQIFNSVVYPSHNYDLPLLGIDFLSFGKVKNLI-VLDFQPLFQDE-D---YQNKYIAPLKYLHNKYPDLAQNLEMKFYDANQYFSKYLLFAK-----TDAETVSTRVFEAFQDYLNLYWQMLADAQA-LHDPEDIQRIVKAQKDYDQYSADR-------------------------DPASGLFSSYFGHEWAERFLHEFLFEDAVPLAVSASK-------R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [280] 'gi|53687950|ref|ZP 00109074.2| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctiforme PCC 73' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------YKPFLEFLEKELFQ-RF---DLQSRVI-PPGLEFK------------------VSDRGRNPATIRSWCYQSQELRK-IRYTYIDAGE------------SAQIFNSVVYPSHNYDLPLLGIDFLSFGKVKNLI-VLDFQPLFQDE-D---YQNKYIAPLKYLHNKYPDLAQNLEMKFYDANQYFSKYLLFAK-----TDAETVSTRVFEAFQDYLNLYWQMLADAQA-LHDPEDIQRIVKAQKDYDQYSADR-------------------------DPASGLFSSYFGHEWAERFLHEFLFEDAVPLAVSASK-------R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [244] 'gi|78713568|gb|ABB50745.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9312] >gi|78780069|ref' -----------------------------------------------------------------------------------------------------------------MLIEDTIFYR----------------------------------------------------------------------------------PDWKWHNFLKYLVNNL-S-KY---NCLEKKI-PSEYSYKDSTY--------------GSKKSKKNVNLSTWGVTHKKRIQFARAVCINS-P------------NYSVLNFLIIPNTIYNVPFFGVDFVSLPNSHLL--VLDFQPSLKIQNQ---YNNELLEKLIKLKNHCHSSLPLAEKMSADVARFFSPGVIWSKLPKEERSDFLIANQLYTSFKEYLDLYLEILFESQQ-VNL-NLQKELINGQNNYLKYRIDN-------------------------DPARPMLSSLFGKEFTESLIKEVLFTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [253] 'gi|78169767|gb|ABB26864.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. CC9902] >gi|78185473|ref|YP 377908.1|' -----------------------------------------------------------------------------------------------------------------MT------------------------------------------------------------------------------TTRHSSTDSVNIPGWGWQPFLEDAVQAL-Q-PL---NLEPYPV-ANDFLYKQDQT--------------GSKAKPITVTTATWACKTDKFRQ-VRAACVYGGT------------AASVLNFVINPSARFDLPFFGGDLVTLPSGHLL--ALDLQPADKSDEA---HTQQVWEKLIPIFERWRSKLPDGGPIPEEAQPFFSPGFLWTRLPLGDEGDQLINSVVRPAFNDYLSLYLELAEAAKP-VGD-DRRDHLLKGQRRYTDYRAEK-------------------------DPARGMLTRFHGSDWTEKYIHTVLFDL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [257] 'gi|67923244|ref|ZP 00516730.1| Ferredoxin-dependent bilin reductase [Crocosphaera watsonii WH 8501] >gi|67854921|gb|EAM50194.1|' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FQPFLQHLEKELFS-RF---DLSSRPI-DPELEFQ------------------ISQRGKNPAMIESWCYQCPQFRK-IRYTYINAGE------------TAQIFNSVLYPSYEYDLPLLGVDLLAFGKKKILV-VLDFQPLFRDE-D---YLEKYIEPIAPIRAKYNELAQDLEMKFYDANQYFSPYLLFAK-----TDAETVVNRLFPAYQEYLQLYWQLLEQAEP-KTDSASIERITKAQKDYDQYSAER-------------------------DPASGLFRSYFGSEWAEEFVHNFLFEDSVPVAVK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [240] 'gi|67925729|ref|ZP 00519037.1| Ferredoxin-dependent bilin reductase [Crocosphaera watsonii WH 8501] >gi|67852421|gb|EAM47872.1|' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FQPFLQHLEKELFS-RF---DLTSRPI-APELEFQ------------------ISQRGKNPAMIESWCYECPQLRK-IRYTYINAGE------------TAQIFNSVIYPNHQYDLPLLGIDFLAFGKKKILV-VLDFQPLFRDS-D---YLKKYIEPMAPIRAKYNELAQDLEMRFYDANQYFSPYLLFAR-----TNPQTVIEQLFPAYQEYIQLYWQLVEQAEP-KTESTELERIIKAQKDYDQYSAER-------------------------DPASGLFNSYFGHEWSEKFLHKFLFEDAVAVAAKKS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [242] 'gi|33634366|emb|CAE20051.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986]' -----------------------------------------------------------------------------------------------------------------MLIQNTIFYS----------------------------------------------------------------------------------QEWRWAKFIKFLISQL-D-NY---HCVEHKI-ASDFSYKESSY--------------GSKKSKKNINLFTWGATHQKRINFARAVCINS-P------------NYSVLNFLIIPKTSYNIPFLGVDFVSLPTSHLL--VLDFQPSLKVENQ---FNSELLEQIIKLKKSCHSSLPVAEKMSEDVAKFFSPGLIWSRLAKHQDSDNLIENQLYDSFKEYLNLYLKTLFESEE-VGH-GLQQELINGQNDYLNYRRDN-------------------------DPARPMLSSLFGKDFTESLINKVLFSTNKVL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [257] 'gi|34223768|gb|AAQ63053.1| PebA [Fremyella diplosiphon]' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------YKCFLEHLEQSLLQ-RF---TLESRPI-PPGLDYQ------------------VSDRGRNPATIQSWCYQCPELRK-IRYTYIDAGA------------SAQIMNSVIYPSHHYDLPLLGIDFLSFGQVKNLI-VMDFQPLFQDE-A---YLKKYIHPLQTLHDKYPDLAQGLEMKFYDANQYFSKYLLFAK-----TDPETVKTRVFEAFKDYLNLYWQMLAQAEP-LIDQSDIQRIVKAQKDYDQYSADR-------------------------DPASGLFSSYFGHQWSERFLYEFLFEDAVPLATVVAK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [243] 'gi|71677064|ref|ZP 00674803.1| Ferredoxin-dependent bilin reductase [Trichodesmium erythraeum IMS101] >gi|71669775|gb|EAO26446.' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------YRPFLEYLEKELFS-KF---DLRSRPI-PAGLEAN------------------VSNRGKNKARIQSWCYECTELRK-IRYTYIDAGA------------TAQVFNSVIYPSYCYDIPLLGIDLLSFGKNKILI-VLDFQPLFQEE-S---YLAKYIEPMRSLREKYNDLAQNLEMKFYDANQYFSKYLLFAK-----TDAQTVQTKFFQAYKDYISLYWQMLHEAEI-IQTEAEIQKIVKAQKDYDQYSAER-------------------------DPASGLFSSYFGHEWSEKFLYQFLFEDAVPLAVPTST-------R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [244] 'gi|15021775|gb|AAK77915.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. WH 8020] >gi|401518|sp|Q02189|P' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FDSFLNELHSDITK-R----GGSPLPL-PEGLE--------------------ECRSSKSSSVIQSWLWDVPGFRR-WRVTRLDAGD------------SLQVFNSVAYPDYNYDHPLMGVDLLWFGARQKLVAVLDFQPLVQDK-D---YLDRYFSGLKELNQRFPDLNGEETMRSFDPNQYFSSWLLFCR-----GGAEQADLSLPKAFSAFLKAYWDLHDNAKS-IPSTIPPEEVKNLQDKYDIYSAER-------------------------DPAHGLFTSHFGKDWSNRFLHEFLFPASSSHK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [236] 'gi|322040|pir||A46448 orf236 3'' of cpeB - Synechococcus sp' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FDSFLNELHSDITK-R----GGSPLPL-PEGLEECRSSKSSSVIQSWLWDVPGECRSSKSSSVIQSWLWDVPGFRR-WRVTRLDAGD------------SLQVFNSVAYPDYNYDHPLMGVDLLWFGARQKLVAVLDFQPLVQDK-D---YLDRYFSGLKELNQRFPDLNGEETMRSFDPNQYFSSWLLFCR-----GGAEQADLSLPKAFSAFLKAYWDLHDNAKS-IPSTIPPEEVKNLQDKYDIYSAER-------------------------DPAHGLFTSHFGKDWSNRFLHEFLFPASSSHK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [256] 'gi|84519098|ref|ZP 01006447.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9211] >gi|84' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FDPYLDELNKLLIV-N----HGEILLV-PDGLQ--------------------ECYSKKQDAVIRSWLWSVPGFRR-WRVTRMDVGD------------KLQVFNSVAYPDYLNEQPIMGIDLLWFGIKNKLVAVLDFQPLVQEK-S---YFDRYYQGLKSLKARYSDFNSKDNVRAYDLSNYFSPWVLLCK-----GDLFQASSSLPFVFSEFLNAYFDISNNFKK-YNSRIEPNRVKELQISYDIYSSAH-------------------------DPAHGLFKSYFGKQWSERFLKEFLFPHSIAKDKT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [238] 'gi|78196434|gb|ABB34199.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. CC9605] >gi|78211975|ref|YP 380' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FDPFLEELLSGIKA-R----GAVPVEV-PHGLE--------------------HNQSSKRSSTIKSWLWDVPGFRR-WRVTRLDAGD------------SLQVLNSVAYPDYTYDHPLMGVDLLWFGAKQKLVAVLDFQPLVQDK-D---YLERYFDGLKSLNAQFPDLNGEETMRSFDPNQYFSSWLLFCR-----GGAEQATSSLPTAFSAFLKTYWDLHDKAVK-IPSSINPIEVAQLQKNYDIYSAER-------------------------DPAHGLFTSHFGSEWSDRFLHEFLFPASQPK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [235] 'gi|88807836|ref|ZP 01123347.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. WH 7805] >gi|88787875|gb|EA' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FDPFLDALQQGIQD-R----GGTLLPL-DQDLA--------------------VQHSERNQSSIRSWLWNVPDFRR-WRVTRLDAGD------------SLQVLNSVAYPEHTLDHPILGIDLLWFGARQKLVAVLDFQPLVQAP-D---YMDRHFSGLKALHQRFPDLSGEETMRSFDPHQYFSPWLLFCR-----GGADQATRSLPSAFDSFLDCFWRMHDASAS-APSLLPPEQVADLQVAYDRYSAER-------------------------DPAHGLFTSHFGKAWSDRFLHEFLFPSAQR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [234] 'gi|51316325|sp|Q7NL66|PEBA GLOVI 15,16-dihydrobiliverdin:ferredoxin oxidoreductase' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------YRPFLEHLQQKLQS-SF---DLQSLTI-PAGLDYR------------------ISERGRESTTIRSWCYTCSELRK-IRYTYIDGGE------------HAQVFNSVIYPAHRYDLPLLGIDLLAFGKKKNLI-VLDFQPLFRDK-A---YLARYIEPMRILRERYGDVAQDVEMKFYDANQYFSKYLLFAR-----TDAETVAGRVFTAYCDYLDLYWQLLASAAP-LGDAQDIRRIVKAQKDYDQYSADR-------------------------DPASGLFSSYFGHEWAERFLYEFLFEDAVPLAVGQPG-------R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [244] 'gi|35211824|dbj|BAC89201.1| 15,16-dihydrobiliverdin:ferredoxin oxidoreductase [Gloeobacter violaceus PCC 7421] >gi|37520829|ref' ------------------------------------------------------------------------------------------MGCRARGRILCSGRESLGRSWQNM-----------------------------------------------------------------------------------------------YRPFLEHLQQKLQS-SF---DLQSLTI-PAGLDYR------------------ISERGRESTTIRSWCYTCSELRK-IRYTYIDGGE------------HAQVFNSVIYPAHRYDLPLLGIDLLAFGKKKNLI-VLDFQPLFRDK-A---YLARYIEPMRILRERYGDVAQDVEMKFYDANQYFSKYLLFAR-----TDAETVAGRVFTAYCDYLDLYWQLLASAAP-LGDAQDIRRIVKAQKDYDQYSADR-------------------------DPASGLFSSYFGHEWAERFLYEFLFEDAVPLAVGQPG-------R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [267] 'gi|72002856|gb|AAZ58658.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. NATL2A] >gi|72383006|ref|Y' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FNDLLSELTKNILE-H----GGKKLIV-PNEFC--------------------ECVSKQGNCKLNSWLWDVPGFRR-WRVTRLDAGD------------RLQVLNSVAYPNEQNDMPIMGIDLLWFEKKQKLVAILDFQPLVQDK-E---YLDRYFDGLKSLKKSFNEFNSDMKSNIYDPTKYFSPWALFCK-----GGNFEAENILPKIFSSFLKCYWKNLDLSKA-NENHIKSQEVSILHIDYDKYSAEK-------------------------DPAHGLFSGFFGKEWSEKYMKEFLFPLSLENINP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [238] 'gi|33633330|emb|CAE08535.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. WH 8102] >gi|33866552|ref|NP 8' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FDPFLEELQTGIQA-R----GGISVEV-PAGLE--------------------HNQSQKGSSTIQSWLWQVPGFRR-WRVTRLDAGD------------SLQVLNSVAYPDFDLDHPLMGVDLLWFGARQKLVAVLDFQPLVQDK-D---YLDRHFDGLKDLNARFPDLNGEETMRSFDPNQYFSSWLLFCR-----GGSEEADRSLPKAFSAFLKAYWGLHDEASK-EPSSISPGDVERLQNAYDVYSAER-------------------------DPAHGLFTSHFGKEWSDRFLHEFLFPASQPA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [235] 'gi|78713569|gb|ABB50746.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9312] >gi|78780070|ref' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FDSLVDFLKTNIDE-L----NGHELQI-SNEFK--------------------EHHNKDSKYIIKNWLFSSPEYRK-WRITRLDGGK------------NIQVFNTVAYPNFDSELPILGADILWFGTAKKLLAILDYQPLIQEN-K---YLEKYCSSLGMIKKKYSAFDNNKMKNIYDSKKYFSPWVIICR-----GNKLNLDRDLNDVFHAFINNYLNL-NKSNP-VNQFLNLEEIKINQIKYDKYSFEK-------------------------DPADKLFKSFFGEKWTKKFINKFLFTLNNEIIL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [236] 'gi|33634367|emb|CAE20052.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986]' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FESLKNFVKTNIED-L----DGKELEI-SKEFK--------------------EHHNKDSKYIIKNWIFESQQYRK-WRITKLDGGD------------KLQVFNTVAYPNFKSEFPILGADILWFGTSQKLLAIFDYQPLIQEK-K---YLQKYCSSLDFIKNQYSVFDNHKMKNIYDSKKYFSPWVMICR-----GNKLNLDRDLNNIFCSFVSNYLTI-NKLHQ-NNQFLDLEQIKNNQIDYDKYSAEK-------------------------DPADKLFKTFFGETWTENFINNFLFTLNHNPLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [236] 'gi|33635537|emb|CAE21861.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9313] >gi|33863953|re' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FDPLLEKLHSSIRI-Q----GGETAAV-PDGLR--------------------ECRNEKKNSWIRSWLWQVPGFRR-WRVSRLDAGE------------SLQVLNSVAYPNYNIDQPLMGLDLLWFGKRQKLVAILDFQPLIQDQ-S---YLERHFQGLKTLQNRFPELSGEETMRLFDPNQYFSPWLLFCR-----GGAEKATNSLPEAFNAFLHCYWELHQQNSD-KASLIPAAEVKQLQIAYDIYSAER-------------------------DPAHGLFTSHFGKAWSDRFLHEFLFPASTKADSSPPADADDDLPR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [249] 'gi|13774105|gb|AAK38141.1| putative 15,16-dihydrobiliverdin:ferredoxin oxidoreductase [Prochlorococcus marinus]' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FESLKNFVKTNIED-L----DGKELEI-SKEFK--------------------EHHNKDSKYIIKNWIFESRQYRK-WRITKLDGGD------------KLQVFNTVAYPNFKSEFPILGADILWFGTSQKLLAIFDYQPLIQEK-K---YLQKYCSSLDFIKNQYSVFDNHKMKNIYDSKKYFSPWVMICR-----GNKLNLDRDLNNIFCSFVSNYLTI-NKLHQ-NNQFLDLEQIKNNQIDYDKYSAEK-------------------------DPADKLFKTFFGETWTENFINNFLFTLNHNPLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [236] 'gi|78169766|gb|ABB26863.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. CC9902] >gi|78185472|ref|YP 377' -----------------------------------------------------------------------------------------------------------------M-----------------------------------------------------------------------------------------------FDPFLDQLHADITA-R----GGTPAEV-PDGLA--------------------ECHSAKGASVIRSWLWQVPGFRR-WRVTRLDAGE------------SLQVLNSVAYPDYGFDHPLMGVDLLWFGARQKLVAVLDFQPLVQNE-A---YFDRYFDGLKALNRQFPDLNGEETMRSFDPNQYFSSWLLFCR-----GGAEQAQTSLPPAFSAFLKAYWALHDAAKN-NPATIAADEVKRLQENYDVYSAER-------------------------DPAHGLFTSHFGKNWSDQFLHEFLFPASGQS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [235] 'gi|8745184|emb|CAB95700.1| hypothetical protein [Prochlorococcus marinus] >gi|28380112|sp|Q9K4U6|PEBA PROMA 15,16-dihydrobilive' -------------------------------------------------------------------------------------------------------------MNKLM-----------------------------------------------------------------------------------------------LQDLHNNLKRRIIS-H----GGKPIEV-ENGMS--------------------ERFSHKQDTVIKSWLWDVPGFRR-WRVTRMDAGD------------KLQVLNSVAYPAYTNDKPILGIDILWFGLKRKLVAVLDFQPLVQEE-R---YFCRYYKDLQILKNRFVDFNSQKTMKIYDSNKYFSPWVLLYN-----GSFDDLQCSLAKILDEFLHAYWQVDNNNSR-EYIKIIPSKVEQLHINYDIYSAER-------------------------DPAHGLFKSYFGQTWADQFVREFLFPHSHLTAD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [241] 'gi|75703515|gb|ABA23191.1| Ferredoxin-dependent bilin reductase [Anabaena variabilis ATCC 29413] >gi|75909790|ref|YP 324086.1|' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSLTSIPSLREQQHPLIRQLADCIEEVWHQHLDLSPYHL-PAELGYV------------------EGRLEGEKLTIENRCYQTPQFRK-MHLELAKVGN------------MLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAA-IADLSPVHLDRTLPASYNSALTNLDTLNFSQPRELPEWG--------NIFSDFCIFVR-----PSSPEEEAMFLGRVREFLQVHCQGAIAASP--VSAEQKQHILAGQHNYCSKQQQN-------------------------DKTRRVLEKAFGTDWAENYMTTVLFDLPE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [245] 'gi|13751780|gb|AAK38587.1| phycocyanobilin:ferredoxin oxidoreductase [Nostoc sp. PCC 7120] >gi|17132841|dbj|BAB75406.1| alr3707' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSLTSIPSLREQQHPLIRQLADCIEEVWHQHLDLSPYHL-PAELGYV------------------EGRLEGEKLTIENRCYQTPQFRK-MHLELAKVGN------------MLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAA-IADLSPVHLDRTLPESYNSALTSLNTLNFSQPRELPEWG--------NIFSDFCIFVR-----PSSPEEEAMFLGRVREFLQVHCQGAIAASP--VSAEQKQQILAGQHNYCSKQQQN-------------------------DKTRRVLEKAFGVDWAENYMTTVLFDLPE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [245] 'gi|72001841|gb|AAZ57643.1| ferredoxin-dependent biliverdin reductase [Prochlorococcus marinus str. NATL2A] >gi|72381991|ref|YP' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESVFCIQSELNPLLLEAFELIKNRINSLNDLEPLYI-DPMLSRI------------------YRKQNEEKLFIINEFYQAKGFRK-IHLEVAKLGK------------SLEILHCVFFPDPCYDLPIFGADLVVNSNNISA-GIVDLSPVG--KHLPDCLISQMRSLKVSKFTEPGKLPEWG--------FIFSPYVAFIR-----PVDFLEEKSFLELIDQYLSLLLSLLVKVKRDEINSLDAMCRLNYQKRYCLNQKRN-------------------------DKTRGILTKFFGSSWADEYINKILFEC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [241] 'gi|22296035|dbj|BAC09860.1| phycocyanobilin:ferredoxin oxidoreductase [Thermosynechococcus elongatus BP-1] >gi|28380099|sp|P592' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSLRQHQHPLIQRLADRIEAIWQAFFPLAPYAL-PEDLGYV------------------EGKLEGERLTIENHCYQAPPFRK-LHLELARVGE------------SLDILHCVMFPEPRYDLPMFGCDLVGGRGQISAA-IVDLSPVT--GQLPAAYTCALNALPKLTFRQPRELPPWG--------HIFSPFCIFIR-----PQGEAEEQQFLDRIGEYLTLHCQLSQQAVP----TDHPQAVIAGQRQYCQQQQQN-------------------------DKTRRVLEKAFGVPWAERYMTTVLFDVPPV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [236] 'gi|33634779|emb|CAE20765.1| ferredoxin-dependent biliverdin reductase [Prochlorococcus marinus str. MIT 9313] >gi|33862863|ref|' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MERVRGACQSPILILLAIVLPFPSTSGPAIHPLIESLAARIRQRRAQLPELSPFAL-DSVMESI------------------SGQLDGEELLISNELHRCRGMRK-LHLEIARLGG------------GLQVLHCVFFPDPRFDLPIFGADIVAGPAGISAA-IVDLSPVG--LTMPEALLHGLESLPIPAFQQVRELPEWG--------SIFSPFVQFIR-----PASSQEESWFVDLADGYLKALISSVIDATPDASDAASTIQRHKSQLSYCIQQKRN-------------------------DKTRGVLEKAFNPQWADRYIEEILFEDPPPL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [264] 'gi|53688531|ref|ZP 00110663.2| hypothetical protein Npun02002041 [Nostoc punctiforme PCC 73102]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPSLREQQHPLIRQLADCIEAAWHQHLDLSPYHL-PDELGYV------------------EGRLEGEKLTIENRCYQTPQFRK-MHLELANIGN------------MLDILHCVMFPRPQYNLPMFGCDLVGGRGQISAA-IADLSPIQLERTLPESYTTALAQLPVLNFSQPRELPEWG--------NIFSDFCIFVR-----PGSPEEEAMFLSRVREFLDIHCMQAIASHP--VSVEQVTQNLAGQHNYCTKQQQN-------------------------DKTRRVLEKAFGPVWAENYMTTVLFDLPT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [240] 'gi|13751782|gb|AAK38588.1| phycocyanobilin:ferredoxin oxidoreductase [Nostoc punctiforme] >gi|28380103|sp|Q93TM9|PCYA NOSPU Phy' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSFTSMPSLREQQHPLIRQLADCIEAAWHQHLDLSPYHL-PDELGYV------------------EGRLEGEKLTIENRCYQTPQFRK-MHLELANIGN------------MLDILHCVMFPRPQYNLPMFGCDLVGGRGQISAA-IADLSPIQLERTLPESYTTALAQLPVLNFSQPRELPEWG--------NIFSDFCIFVR-----PGSPEEEAMFLSRVREFLDIHCMQAIASHP--VSVEQVTQNLAGQHNYCTKQQQN-------------------------DKTRRVLEKAFGPVWAENYMTTVLFDLPT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [245] 'gi|31415693|gb|AAP45708.1| 3Z-phycocyanobilin:ferredoxin oxidoreductase [Expression vector pAT101] >gi|1208485|dbj|BAA10653.1|' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAVTDLSLTNSSLMPTLNPMIQQLALAIAASWQS-LPLKPYQL-PEDLGYV------------------EGRLEGEKLVIENRCYQTPQFRK-MHLELAKVGK------------GLDILHCVMFPEPLYGLPLFGCDIVAGPGGVSAA-IADLSPTQSDRQLPAAYQKSLAELGQPEFEQQRELPPWG--------EIFSEYCLFIR-----PSNVTEEERFVQRVVDFLQIHCHQSIVAEP--LSEAQTLEHRQGQIHYCQQQQKN-------------------------DKTRRVLEKAFGEAWAERYMSQVLFDVIQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [248] 'gi|71673592|ref|ZP 00671340.1| Ferredoxin-dependent bilin reductase [Trichodesmium erythraeum IMS101] >gi|71672840|gb|EAO29502.' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLKTSIPSQGIQQNPLVCQLANSIEAVWQRYLNLEPYYL-PADLGYV------------------EGRLEGEKLIIQNKCYQTAQFRK-LHLELATIGP------------KLDILHCVMFPRISYPLPIFGTDLVGARGQISAA-VVDISPQSQDRKLPEVYNYQLQALPIKEFAHPRQLPQWG--------EIFSEFCLFIR-----PTGLEEEQKFISIVESYLEIHCQQAIAQKP--VSPEQQLEILKAQHHYCTQQRQN-------------------------DKTRRVLEKAFGPEWTDYYLTTVLFDSPN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [245] 'gi|78197206|gb|ABB34971.1| ferredoxin-dependent biliverdin reductase [Synechococcus sp. CC9605] >gi|78212747|ref|YP 381526.1| p' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQPKPLAPPPGQHPLVQALAASIRSAWAGLPGLEILPC-DEDLRFI------------------QGQLDGEGLSIGNELFRCIGLRK-LHLEVARLGN------------GLQILHSVWFPDPHYDLPIFGADIVAGPAGISAA-IVDLSPTS--DALPEQLIQRLEARPWPAFRQVRELPAWG-------SAIFSNKVCFIR-----PDGADEEAAFQQLVSHYLQVMATSVIEATPEQSTALTTVRRYEGQLNYCLQQKRN-------------------------DKTRRVLEKAFDSAWADRYIDMLLFDNPPEL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [247] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-209 220-232 237-267 285-286 294-310 342-343 352-359 376-425 437-442 461-504 514-743; END; BEGIN MacClade; Version 4.0 87; LastModified -1037642594; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '10' '664' '1' all; EditorPosition '285' '47' '611' '1463'; TreeWindowPosition '46' '6' '1131' '1550'; ListWindow Characters closed Geneva '9' '50' '25' '273' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '273' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '52' '30' '1118' '1540'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '931' '55' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '50' 001011001; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '256' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END;