#NEXUS [MacClade 4.08 registered to Sugimoto, ERATO] BEGIN DATA; DIMENSIONS NTAX=17 NCHAR=336; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|15235367|ref|NP 192153.1| EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) [Arabidopsis thaliana] >gi|30984562|gb|AAP42744.1| At4' MAESVFSCIPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVISDLLPLPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSDFGLERELGPDQNLDPKPTTTDLALNDEEVSKPVGSGLETTSFWSLYDDLYTDTIPAPPPEDSIDDQEEEIETSEIRPGRDLPVRKRRKICRSLGSHLASGGWNLSREQGNKLLASRFRGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCDETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT [336] 'gi|54291869|gb|AAV32237.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|51854469|gb|AAU10848.1| unknown protein' MSPSPLSVLADDVLLQILGRLEGDPRDWARASCASPRLAALLRAACLPPRLTRALP---AELLP-PPSDGA--------------PRAWAALHKLSVCCPGLLRAGVLLEPSDFGLELDIGPDLSVPPSPSSSSLDHASTATSAPASSSAAAATTWSLYDDLYLDTAYDCSPSEAAQISNTAATPAPAAARRGVASGSRRRARRTVGAHLASGSWTLSREQGNKLLASRFRGDRLYICDWPGCVHAEERRKYMVFRGVFHDFPRSQVRRALRD-TRRPTVAVDCAFCGCTEAWDLYAAFCLRSFYGYHDDGEPVVRAYVCENGHVAGAWTERPLYS [317] lcl|Smo_EID1_1_2_unnamed_protein_product MAAVLLSRLSEDLLVNIFSRMEEDPRHLAVLACVCRRFGYVIRSFCWRNQCMRALPTIVPEVLE------HGQARQDHQDQLGEPAGGWATLFRILVCCPGLDSAGI---AGILGWKESSLGGDD------------------------------------------------------------DHTRNGDEHRSKKRIKLVG---PHVASGSPTFSRELGNKLLASRFRTDSLYLCDWPGCVHSEERRKYKLFRGIFKDFKASQVCRNLRD-LKAKKTGESCAFCLAPSMWDMVTSFCLRRSLEYHDDGEPVVRAYVCENGHVCGAWTDQPASL [263] lcl|Smo_EID1_3_1_unnamed_protein_product MAAVLLSRLSEDLLVNIFSRMEEDPRHLAVLACVCRRFGYVIRSFCWRNQCMRALPTIVPEVLE------HGQARQDHQDQLGEPAGGWATLFRILVCCPGLDSAGVLLDSWDFGLERELAGGDD------------------------------------------------------------DHTRNGDEHRSKKRIKLVG---PHVASGSPTFSRELGNKLLASRFRTDSLYLCDWPGCVHSEERRKYKLFRGIFKDFKASQVCRNLRD-LKAKKTGESCAFCLAPSMWDMVTSFCLRRSLEYHDDGEPVVRAYVCENGHVCGAWTDQPASL [266] lcl|Ppa_EID1_2_1_unnamed_protein_product M---FFNRIVDDIIVNIFGRLEDDPRDFARLACVGRRFHNVIKTSCYKRQCMRVVPSMVSELM-------Q---SSSRQGVLVEPPGGWEVLQKLLVCCPGLRHAGVLLNCWDYGLEREIGRSDDFELVLRKDRSCGMENSDENDVAGSVVEHKGEHSEYGTSEQRGKGTACANEAFGEVDAGEEEHGVSRSRSRSRSRSPRNSEEELHLAKGNWTLTREQGNKLLASRFRSDSLYLCDWPGCMHQGERRVYKLFRGIFKNFKHSHVHRNLKD-LKAKRTEIRCAFC-SEDTYDMVTSFCLRRSFEYHEDGEPVIRAYVCESGHVAGAWTDRPLYL [321] lcl|Ppa_EID1_1_1_unnamed_protein_product M---FFSRISEDILVNVFARLEQDPRDLARLACVCRRFKNVIRTNCWRHQCMRVVPTVVNELMS------Q---QLQKRDLLGEPPGGWGSLQKILVCCPGLQHAGVMLESWDFGLDRELGSSDEYYPQYQSEPSRGFDSVVSSDLSTSV----------------GKEQVPSEPAIESVTTLVSHQGAADLHQPPVNKLLEETHKGAHLAKGSWSLTREQGNKLLASRFRDDSLFICDWPGCCHQGEKRVYKLFRGIFKNFKQSHVWRNLKD-QGCRHTNLSCAFCSSRKTFDMVTSFCLRRSFEYHEDGEPVVRAYVCENGHVAGTFCPEDDFR [307] lcl|Smo_EID1_4_1_unnamed_protein_product MHGQGAGLLNEDILELVLRHANWNPYMLCAIACVCKPLNELIKLEMWKKFCLSRAPRMAADL--------SFGV------KNDAIEINWDKLGKLMIYCAGCHSTRHFKSL---------------------------------------------------------------------------------------------SPPGHLVLKS-RFSRTSGRSFLHPKCRSDVLYVTD--LCEHLDDEEDVGLFRGVFKSFGASKTRQMLLDR-GKLEEGACCPFCRS-RVWSMMEARMIPPSAQRRLASENSIEYLVCINGHLTGMCLLLPLPL [224] 'gi|15242296|ref|NP 197048.1| unknown protein [Arabidopsis thaliana] >gi|50198779|gb|AAT70423.1| At5g15440 [Arabidopsis thaliana' MCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDL--------QSSG-------SHCIDGNWRALGKLLIYCSGCTQGGLFNSSV--------------------------------------------------------------------------------------------QIPGHFVYRT-RFSRTLGRSLLPPQCRTDVLYVCD--PCEHQGEEGDVGLFRGIFKSFPTSKVRKVIINKAVPFHPSEVCPYCKA-KLWSMLQAKIIPQSACIRLEAEDCIEYFVCLNGHLLGICTLAPLSQ [225] 'gi|50916755|ref|XP 468774.1| expressed protein (alternative splicing) [Oryza sativa (japonica cultivar-group)] >gi|51964264|ref' MCLCLKGHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVLWKEFCHARAPRMMQDL--------HSGG-------SHIVDGNWKALGKLLIHCAGCTKGGLFG-NI--------------------------------------------------------------------------------------------HVPGHFVFRT-RFSRTCGKSILPPQCRTDVLYVSD--PCEHQGEEGDLGFFRGIFKSFASSKVKKMLIEKQAKFHPKEVCPYCKA-KLWNLLQANMIPRSASIRLDADDSVEYYICLNGHILGLCTLMPVS- [223] 'gi|50938983|ref|XP 479019.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|34393587|dbj|BAC83214.1| unknown prot' MCVCIKGHLSEDALFLVFRHMNWNPRLIAVLSCVCKWFDEVAKQVLWKEFCHARAPKMMLDL--------HSGG-------SHIVDGNWKALGKLLIYCNGCTKGGLFN-NI--------------------------------------------------------------------------------------------HVPGHFVFRT-RFSRTAGKSFLPQQCRNDVLYVSD--PCEHQGDEGDLGFFRGIFMSFATSKVKKMLIEKRARFHPSESCPYCKA-KLWSMLEANMSPGSSSARLGAEDSVEYFVCLNGHVIGIGTLLPLSE [224] 'gi|14210079|gb|AAK56924.1| circadian clock coupling factor ZGT [Nicotiana tabacum]' MSE-GSGIYDERILIPVFASINWDIRTLCQMSCVNRKLRAVAKRILWREMCVYRAPQMITAL--------TDGS------PSGRIGGGWQAMAKLMFFCNGCRSSRHFQVGE--------------------------------------------------------------------------------------------PAPGHFVKTS-RFSKTSGRSFLVKKCRNDLLYVSD--PCEHGDKDDDLGIFRGVFWGFMRSRTRACLIRRQVELEEKIKCPFCGA-RVWSMTAARLVPKSAARRLGSESGLEYFVCVNGHLHGACWLVPLSV [225] 'gi|15241717|ref|NP 198752.1| unknown protein [Arabidopsis thaliana] >gi|22137234|gb|AAM91462.1| AT5g39360/MUL8 40 [Arabidopsis' MCHCTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLWKEFCRARAPKMMSDL--------QSSG-------SHSVDGSWRALGKLLIYCSGSSKGGLFN-DV--------------------------------------------------------------------------------------------QISGHFVHRT-RFSRTSGRSFLPPQCRTDILYVSD--PCEHQGEDGDLGFFRGIFKSFSMSKVRKLLIKKGTPFHPTEVCPYCKA-KLWSMLQAKMIPQSASCRLGAEDSIEYYVCLNGHMLGVCTLLPLSQ [224] 'gi|7573435|emb|CAB87751.1| putative protein [Arabidopsis thaliana]' MSG-KSGIENERVLVLVFESISWDIHTLCTIASLSRRFCAIARRILWRRLCVNRAPGMVAAL--------SGED------PSGRIDGGWHALAKLMFFCGGGESTRYFNLSQ--------------------------------------------------------------------------------------------PTSGHFACES-RFSKTSGRFFLPKNCRRDLLYMSD--PCEHVGGDEHLGVFRGVFREFMRSKTRECLVRRQAALEEKVRCPYCGG-RVWSMTAARLVPKSAARRLGSEGGLEFFVCVNGHLHGTCWLIPLSM [225] 'gi|78498846|gb|ABB45381.1| defense-related F-box protein [Oryza sativa (indica cultivar-group)]' MLALIHQCLP-ELLFEIFARMS--PYSLGRAACVCRKWKYTVRNTLWRNACLKTWQRTGMEANYQMVQLYDSS---------------WRKMWMLR-----------------------------------------------------------------------------------------------------------------TGTAEWQFTKPSGKFLYKISPQKDVV------KCMHASKGDCV--FKGDYVLSTRLDVLKILT---------------------------------------DPEVPAVTHSRGLTP--FVFVPFEG [156] 'gi|68611220|emb|CAE03032.3| OSJNBa0084A10.7 [Oryza sativa (japonica cultivar-group)]' MLALIHQCLP-ELLFEIFARMS--PYSLGRAACVCRKWKYTVRNTLWRNACLKTWQVCTV------------------------------QYWYL------------------------------------------------------------------------------------------------------------------TGTAEWQFTKPSGKFLYKISPQKDVV------KCMHASKGDCV--FKGDYVLSNRLDVLKILT---------------------------------------DPEVPAVTHSRGLTP--FVFVPFEG [140] 'gi|50924372|ref|XP 472546.1| OSJNBa0084A10.7 [Oryza sativa (japonica cultivar-group)]' MLALIHQCLP-ELLFEIFARMS--PYSLGRAACVCRKWKYTVRNTLWRNACLKTWQ-----ANYQMVQLYDSS---------------WRKMWMLR-----------------------------------------------------------------------------------------------------------------TGTAEWQFTKPSGKFLYKISPQKDVV------KCMHASKGDCV--FKGDYVLSNRLDVLKILT---------------------------------------DPEVPAVTHSRGLTP--FVFVPFEG [151] 'gi|18395030|ref|NP 564150.1| unknown protein [Arabidopsis thaliana] >gi|30102634|gb|AAP21235.1| At1g21760 [Arabidopsis thaliana' MPALIHRCLP-ELLFEVFARMM--PYDLGRASCVCRKWRYTVRNMFWRNACLKAWQTAGVIENYKILQKYDGS---------------WRKMWLLR-----------------------------------------------------------------------------------------------------------------AGIAEWKITNPSGRFLYKNSSQKDVA------KYMNASKSENL--YKGTYTLSNRMDLLSLVT---------------------------------------NPDIPAVSHKRGMTA--FVFVPFEG [156] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 2-4 11 23-24 57-216 236-242 253-254 273-315 327-329 336; END; BEGIN MacClade; Version 4.0 87; LastModified -1055691426; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '36' Geneva '14' '576' '1' all; EditorPosition '59' '14' '544' '1605'; TreeWindowPosition '46' '6' '993' '1630'; ListWindow Characters closed Geneva '9' '50' '10' '273' '359' 000; ListWindow Taxa closed Geneva '9' '50' '10' '273' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition 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