#NEXUS 
[MacClade 4.08 registered to Tomoaki Nishiyama, National Institute for Basic Biology]


BEGIN DATA;
	DIMENSIONS  NTAX=28 NCHAR=612;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|15238565|ref|NP 197840.1| TTG1 (TRANSPARENT TESTA GLABRA 1); nucleotide binding [Arabidopsis thaliana] >gi|30689492|ref|NP 8'    ------------------------------------------------------------------------------------------------------------------------------MDNSAPDS--------------------------------------------------LSRSETAVTYDSPYPLYAMAFSSLRSS---SGHRIAVGSFLEDYNNRIDILSFD---SDSMTVKPLPNLSFEHPYPPTKLMFSPPSLRR-PSS---GDLLASSGDFLRLWEINED-----------------------SSTVEPISVLNNSK-T--SEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYES------------------PQP-DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDT-----------QALIWELPTV----------------AGPN-------------GIDPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV   [341]
'gi|10636051|emb|CAC10524.1| transparent testa glabra 1 [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------MDNSAPDS--------------------------------------------------LSRSETAVTYDSPYPLYAMAFSSLRSS---SGHRIAVGSFLEDYNNRIDILSFD---SDSMTVKPLPNLSFEHPYPPTKLMFSPPSLRR-PSS---GDLLASFGDFLRLWEINED-----------------------SSTVEPISVLNNSK-T--SEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYES------------------PQP-DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDT-----------QALIWELPTV----------------AGPN-------------GIDPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV   [341]
'gi|51699178|emb|CAE53274.1| transparenta testa glabra 1 protein [Matthiola incana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSEAAVTYDSPYPLYAMAFSS--SR---AGQRIAVGSFLEDYNNRIDILSFD---SDSMTVKPLPNLSFEHPYPPTKLLFSPPSLRR-PSG---GDLLASSGDFLRLWEVSED-----------------------SSTVEPVSVLNNSK-T--SEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYES------------------PQP-DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSAGDDT-----------QALIWELPTV----------------AGPN-------------GIDPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV   [329]
'gi|6752886|gb|AAF27919.1| Ttg1-like protein [Malus x domestica]'                                    ------------------------------------------------------------------------------------------------------------------------------MENSTQES--------------------------------------------------HLRAENSVTYESPYPLYAMAFASPQTRTRHQHHRIAVGSFIEEYSNRVDILSFD---PDTLSIKPNPTLSFDHPYPPTKLMFHPNPNAL-HKT---NDVLASSGDYLRLWEVGD-------------------------STVEPIQVLNNSK-T--SEFCAPLTSFDWNDIEPRRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYES------------------PQP-DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHRGSVNAIAWAPQSCRHICSAGDDT-----------QALIWDLPTV----------------AGPN-------------GIDPMSMYSAGAEINQLQWSAAQPDWISIAFSNKMQLLKV   [342]
'gi|22324807|gb|AAM95645.1| WD-repeat protein GhTTG3 [Gossypium hirsutum]'                                    ------------------------------------------------------------------------------------------------------------------------------MENSTQES--------------------------------------------------HLRSDNSVTYESAYTVYAMALSSTPSSTNINHQRIALGSFLEDYTNRVDIISFD---PETLSFKTHPKLAFDHPYPPTKLMFQPNRKSA-SSSSSCSDLLASTGDFLRLWEVRE-------------------------SSIEPVTVLNNSK-T--SEFCAPLTSFDWNDVEPKRIGTSSIDTTCTIWDIEKCVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYES------------------PQP-DTPLLRLAWNKQDLKYMATIQMDSNKVVILDIRSPTTPVAELERHHASVNAIAWAPQSCKHICSAGDDT-----------QALIWELPTV----------------AGPN-------------GIDPLCVYSAGYEINQLQWSAAQPDWIAIAFSNKLQLLKV   [345]
'gi|13346184|gb|AAK19614.1| GHTTG1 [Gossypium hirsutum]'                                    ------------------------------------------------------------------------------------------------------------------------------MENSTQES--------------------------------------------------HLRSDNSVTYESAYTVYAMALSSTPSSTNINHQRIALGSFLEDYTNRVDIISFD---PETLSFKTHPKLAFDHPYPPTKLMFQPNRKSA-SSSSSCSDLLASTGDFLRLWEVRE-------------------------SSIEPVTVLNNSK-T--SEFCAPLTSFDWNDVEPKRIGTSSIDTTCTIWDIEKCVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYES------------------PQP-DTPLLRLAWNKQDLKYMATIQMDSNKVVILDIRSPTTPVAELERHHASVNAIAWAPQSCKHICSAGDDT-----------QALIWELPTV----------------AGPN-------------GIDPLCVYSAGYEINQLQWSRAQPDWIAIAFSNKLQLLKV   [345]
'gi|2290532|gb|AAC18914.1| AN11 [Petunia x hybrida]'                                    ------------------------------------------------------------------------------------------------------------------------------MENSSQES-------------------------------------------------QHLRSENSVTYDSTYPIYSMAFSSFPT----PRRRIAVGSFIEELNNRVELLSFN---EETLTLNPIPNLSFDHPYPPTKLMFHPNPIK---SN---NDILASSGDYLRLWEVKE-------------------------SSIEPLFTLNNSK-T--SEYCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDVEKGVVETQLIAHDKEVYDIAWGEAGVFASVSADGSVRIFDLRDKEHSTIIYES------------------PTP-DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPAMPVAELERHQASVNAIAWAPQSCRHICSGGDDG-----------QALIWELPTV----------------AGPN-------------GIDPMSMYSAGAEINQLQWSPAQRDWIAIAFSNKLQLLKV   [337]
'gi|22324799|gb|AAM95641.1| WD-repeat protein GhTTG1 [Gossypium hirsutum]'                                    ------------------------------------------------------------------------------------------------------------------------------MENSTQES--------------------------------------------------HLRSDNAVTYESPYPLYAMALSSTPAVTHLNYQRIALGSFIEDYTNRVHIISFD---PESLTLITHPSLSFDHPYPPTKLMFQPHRKSPFSSS---SDLLASSGDYLRLWEVGH-------------------------SSIELISVLDNSK-T--SEFSAPLTSFDWNDVEPNRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEGRVFGSVSADGSVRIFDLRDKEHSTIIYES------------------PQP-DTPLLRLAWNKQDLRYMATTLMDSNKVVILDIRSPTTPVAELDRHGASVNAIAWAPQSCKHICSAGDDT-----------HALIWELPTV----------------AGPN-------------GIDPLSMYSASSEINQLQWSAAQPDWIAIAFSNKMQLLKV   [343]
'gi|14270085|dbj|BAB58883.1| putative regulatory protein in anthocyanin biosynthesis [Perilla frutescens]'                           ------------------------------------------------------------------------------------------------------------------------------MENSTQES--------------------------------------------------HPRPENVVTYDSPYPIYAMAISAV------NRRRVAVGSFVEELKNHVDILSFS---EDSSSLKPVPSLSFDHPYPPTKLLFHPS-VS---AP---SNLLASSGDFLRLWEVKD-------------------------SSIVAVSTLNNSK-T--SEYSAPLTSFDWNEVEPRRIGTSSIDTTCTIWDIEKGAVETQLIAHDKEVYDIAWGEAGVFASVSADGSVRIFDLRDKEHSTIIYES------------------PMP-DTPLLRLAWNKQDLRYMATILMDSNKIVILDIRSPTMPVAELERHSASVNAIAWAPQSCKHICSAGDDG-----------QSLLWELPTV----------------AGPN-------------GIDPMTMYSAGAEINQLQWSAAQPDWIAIAFANKMQMLKV   [333]
'gi|22324801|gb|AAM95642.1| WD-repeat protein GhTTG1 [Gossypium hirsutum]'                                    --------------------------------------------------------------------------------------------------------------------------------NSTQES--------------------------------------------------HLRSDNAVTYESPYPLYAMALSSTPAVTHLNHQRIALGSFIEDYANRVHIISFD---PESLTLTTHPSLSFDHPYPPTKLMFQPHRKSPFSSS---SDLLASSGDYLRLWEVGH-------------------------SSIELISILDNSK-T--SEFSAPLTSFDWNDVEPNRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFGSVSADGSVRIFDLRDKEHSTIIYES------------------PQP-DTPLLRLAWNKQDLRYMATTLMDSNKVVILDIRSPTMPVAELDRHGASVNAIAWAPQSYKHICSAGDDT-----------HALIWELPTV----------------AGPN-------------GIGPLSMYSASSEINQLQWSATQPDWIAIAFSNKMQLLKV   [341]
'gi|37544703|gb|AAM76742.1| anthocyanin biosynthetic gene regulator PAC1 [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------MDPPKPPSSVASS------------------------------------------SGPETPNPHAFTCELPHSIYALAFSP-------VAPVLASGSFLEDLHNRVSLLSFDPVRPSAASFRALPALSFDHPYPPTKLQFNP--RA---AA---PSLLASSADTLRIWHTPLD------------------DLSDTAPAPELRSVLDNRKAS--SEFCAPLTSFDWNEVEPRRIGTASIDTTCTVWDIDRGVVETQLIAHDKAVHDIAWGEAGVFASVSADGSVRVFDLRDKEHSTIVYES------------------PRP-DTPLLRLAWNRSDLRYMAALLMDSSAVVVLDIRAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDG-----------QALIWELPET----------------AAAVPAE----------GIDPVLVYDAGAEINQLQWAAAHPDWMAIAFENKVQLLRV   [353]
'gi|50251896|dbj|BAD27834.1| putative anthocyanin biosynthetic gene regulator PAC1 [Oryza sativa (japonica cultivar-group)]'         ------------------------------------------------------------------------------------------------------------------------------MEQPKPPSVAA--------------------------------------------SAAEAQNPNAFTCELPHSIYALAFSP-------SAPVLAAGSFLEDLHNRVSLLSFDPVHPTAASFRALPALSFDHPYPPTKLQFHP-RAA---SA---PHLLASSSDALRLWLAPLD----------------DLAATATAAAPELRSVLDNRK-TSASEFCAPLTSFDWNEAEPRRIGTASIDTTCTIWDIERGVVETQLIAHDKAVHDIAWGENGIFASVSADGSVRVFDLRDKEHSTIFYES------------------PRP-DTPLLRLAWNRYDFHYMATLLMDSSAVVVLDMRAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDG-----------QALIWELPAT----------------PGAVPAE----------GIDPVMVYDAGAEINQLQWAAAYPEWISIAFENKVQLLRV   [355]
lcl|Ppa_TTG_2_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------MSEFAFVHRSRKRLIRALPYSASEHESQQSLEWKCDICFENDVLIFDVYAHSRFENIEPQRRSEIYTYEAPWPIYGMNWSVRKD----KHMRLAIGSFIEDHRNKVEIVQLD---DETCDFKADPKLSFEHTYPTTKIMFIPDKEC---QK---PDLLATTGDYLRIWQIHDD-------------------------KVERKSILNNNK-Y--SEYCAPLTSFDWNEAEPKRLGTSSIDTTCTIWDIEKEVVDTQLIAHDKEVYDIAWGGAGVFASVSADGSVRVFDLRDKEHSTIIYES------------------SQP-DTPLLRLGWNKQDPRYIATILMDSSKVVILDIRVPTVPVAELQRHQACVNSVAWAPHSPCHICTAGDDS-----------QALIWDLSSI----------------SQPVEG-----------NLDPILAYTAGAEINQLQWSSTQPDWVAIAFSTKLQILRV   [388]
'gi|22324805|gb|AAM95644.1| WD-repeat protein GhTTG2 [Gossypium hirsutum] >gi|22324803|gb|AAM95643.1| WD-repeat protein GhTTG2 ['    ------------------------------------------------------------------------------------------------------------------------------MAASSDPNPEG--------------------------------------------SDEQQKRSEIYTYEAPWHIYAMNWSVRRD----KKYRLAIASLLEHYNNRLEIVQLD---DSNGEIRSDPNLSFDHPYPPTKTIFIPDKEC---QK---PDLLATSSDFLRIWRISDD-----------------------HSRVDLKSLLNGNK-N--SEFCGPLTSFDWNEAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES------------------SEP-DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDS-----------QALIWDLSSM----------------SQPVEG-----------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV   [346]
lcl|Smo_TTG_1_2_unnamed_protein_product                                    QGPSLPIKIDDEVVAYKTYLSFVPLKDHESYAPMLCATNIAGFLLRRAAGLRRFARYTMEEIVLKEDREMELRKLKKCRIPRPFRVLCRISTRLPGHSWLRQEMRGSDERLIHQGLGFRSSPRPGSMASD---------------------------------------------------AQEPAKRAEIYTYDANWPIYAMNWSVRKD----SQFRLGIGSFVEDYRNTVQIVQLD---DEKNKFVADSRLCFEHPYPTTKLMFIPDKEC---QR---PDLVATSGDFLRIWQVGED-------------------------KVELKSLLNNNK-N--SEFCAPLTSFDWNELEPKRVGTSSIDTTCTIWDIEKEVVDTQLIAHDKEVNDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES------------------PQP-DTPLLRLGWNKQDPRYMATIFMDSVKVVILDIRLPTLPVAELQRHQGTVNAIAWAPHSSCHICTAGDDS-----------QALIWDLSNM----------------SQPIDG-----------GLDPILAYTAKAEINQLQWSSSQTDWVAIAFASKLEILRV   [463]
lcl|Ppa_TTG_3_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------MDMY---------------------------------------------------GQEPQRRSEIYTYEAPWPIYGMNWSVRKD----KHMRLAIGSFLEDHRNKVEIVQLD---DETCDFKADPKLSFDHPYPTTKIMFIPDKEC---QK---PDLLATTGDYLRIWQIHDD-------------------------KVESKSLLNNNK-Y--SEYCAPLTSFDWNEAEPKRLGTSSIDTTCTIWDIEKEVVDTQLIAHDKEVYDIAWGGAGVFASVSADGSVRVFDLRDKEHSTIIYES------------------TQP-DTPLLRLGWNKQDPRYMATILMDSSKVVVLDIRVPTVPVAELQRHQACVNSVAWAPHSPCHICTAGDDSQHSLTCNFNLAQALIWDLSSI----------------SQPVEG-----------NLDPILAYTAGAEINQLQWSSTQPDWVAIAFSTKLQILRV   [348]
'gi|22324809|gb|AAM95646.1| WD-repeat protein GhTTG4 [Gossypium hirsutum]'                                    ------------------------------------------------------------------------------------------------------------------------------MTATSDPNPEV--------------------------------------------SDEQQKRSEIYTYEAPWYIYAMNWSVRRD----KKYRLAIASLLEQYPNRLQIVQLD---DSNGEIRSDPNLSFDHPYPATKTIFIPDKDC---QK---PDLLATSSDFLRIWRISDD-----------------------GSRVDLKSLLNGNK-N--SEFCGPLTSFDWNEAEPKRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES------------------SEP-DAPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELRRHQASVNAVAWAPHSSCHICTAGDDS-----------QALIWDLSSM----------------GQPVKG-----------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV   [346]
'gi|15222113|ref|NP 172751.1| AN11; nucleotide binding [Arabidopsis thaliana] >gi|22136196|gb|AAM91176.1| WD repeat protein ATAN'    ------------------------------------------------------------------------------------------------------------------------------MGTSSDPIQDG--------------------------------------------SDEQQKRSEIYTYEAPWHIYAMNWSVRRD----KKYRLAITSLLEQYPNRVEIVQLD---ESNGEIRSDPNLSFEHPYPPTKTIFIPDKEC---QR---PDLLATSSDFLRLWRIADD-----------------------HSRVELKSCLNSNK-N--SEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES------------------SEP-DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDS-----------QALIWDISSM----------------GQHVEG-----------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV   [346]
'gi|2290528|gb|AAC18912.1| ATAN11 [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------MGTSSDPIQDG--------------------------------------------SDEQQKRSEIYTYEAPWHIYAMNWSVRRD----KKYRLAITSLLEQYPNRVEIVQLD---ESNGEIRSDPNLSFEHPYPPTKTIFIPDKEC---QR---PDLLATSSDFLRLWRIADD-----------------------HSRVELKSCLNSNK-N--SEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES------------------SEP-DTPLVRLGWDKQDPRYMATIIMDSAKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDS-----------QALIWDISSM----------------GQHVEG-----------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV   [346]
'gi|53125528|emb|CAE76645.1| WD 40 protein [Matthiola incana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKRSEIYTYEAPWHIYAMNWSVRRD----KKYRLAITSLLEQYPNRVEIVQLD---ESNGEIRSDPNLSFEHPYPPTKTIFIPDKEC---QR---PDLLATSSDFLRLWRIADD-----------------------HSRVELKSCLNSNK-N--SEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES------------------SEP-ETPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDS-----------QALIWDISSM----------------GQHVEG-----------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV   [331]
'gi|28393624|gb|AAO42231.1| putative transcriptional regulator protein [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------MVTSSDQIQNG--------------------------------------------SEEQSKRSEIYTYEAPWQIYAMNWSIRRD----KKYRLAITSLIEQYPNRVEIVQLD---ESNGEVRSDPNLCFEHPYPPTKTSFIPDKEC---QR---PDLLATSSDFLRLWRISDD-----------------------ESRVELKSCLSSDK-N--SEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYES------------------GEP-STPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRFPALPVVELQRHQASVNAIAWAPHSSSHICSAGDDS-----------QALIWDISSM----------------GQHVEG-----------GLDPILAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV   [346]
'gi|15231593|ref|NP 189298.1| nucleotide binding [Arabidopsis thaliana] >gi|56381995|gb|AAV85716.1| At3g26640 [Arabidopsis thali'    ------------------------------------------------------------------------------------------------------------------------------MVTSSDQIQNG--------------------------------------------SEEQSKRSEIYTYEAPWQIYAMNWSIRRD----KKYRLAITSLIEQYPNRVEIVQLD---ESNGEIRSDPNLCFEHPYPPTKTSFIPDKEC---QR---PDLLATSSDFLRLWRISDD-----------------------ESRVELKSCLSSDK-N--SEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYES------------------GEP-STPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRFPALPVVELQRHQASVNAIAWAPHSSSHICSAGDDS-----------QALIWDISSM----------------GQHVEG-----------GLDPILAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV   [346]
'gi|21593264|gb|AAM65213.1| flower pigmentation protein ATAN11 [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------MGTSSDPIQDG--------------------------------------------SDEQQKRSEIYTYEAPWHIYAMNWSVRRD----KKYRLAITSLLEQYPNRVEIVQLD---ESNGEIRSDPNLSFEHPYPPTKTIFIPDKEC---QR---PDLLATSSDFLRLWRIADD-----------------------HSRVELKSCLNSNK-N--SEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES------------------SEP-DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDS-----------QALILDISSM----------------GQHVEG-----------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV   [346]
lcl|Ppa_TTG_1_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------MASGEK-------------------------------------------------IDQDAKRRGIFTYEAPWAVYGMNWSVRKN----SKFRLAVGSFIEDYRNKVEIVQLD---DDSVNFSADPKLSFDHPYPATKIMFIPDKES---EK---PDLLATTGDNLRIWRIEED-------------------------KVELKSLLNNRQ-N--SDYCSPLTSLDWNESDLRRLGTSSIDTTCTIWDIESGVVDTQLIAHDKEVHDIAWGGIGVFASVSADGSVRVFDLRDKQNSTIIYES------------------PQPDSAPLLRLGWNKEDPRFMATILMDSSKVVILDIRYPTVPVSELQRHLASVNAIAWAPHSACHICSAGDDS-----------QALIWDMS------------------AKAVDG-----------GLDPILAYTAGGEVNQLQWSASHSDWVAIAFGNKLQVLRV   [338]
lcl|Ppa_TTG_4_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------MDM----------------------------------------------------YAQEAKRKGIYTYDAAWTIYGMNWSVRRD----SKFRLAVGSFIEEYRNMVEIVQLE---DETGKFQVDPKLSFDHPYPATKIMFIPDKES---AK---PDLMATTSDNLRIWQIHED-------------------------KVELKSLLNNRQ-N--RDYCSPLTSFDWNEFDMRRLGTSSIDTTCTIWDIERGIVDTQLIAHDKEVHDIAWGGIGVFASVSADGSVRVFDLRDKQHSTIIYES------------------PQP-GTPLLRLGWNKDDPRFMATILMDSSKVVILDIRYPTVPVSELQRHQACVNAIAWAPHSACHICTAGDDS-----------QALIWDMS------------------AKPVDG-----------GLDPILAYTAGGEVNQVQWSASHSDWVAIAFGNKLQVLRV   [334]
lcl|3851_Cre_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------MS-----------------------------------------------------ASDKRERQEVYTYVAPDPVYAMNWSVRRD----KRFRLGVASFREDVTNYVDIVSLD---DESDELRADPGLRFPHDYPATKLMWMPDREG---CR---PDLLATTGEALRIWRVGPG-----------------------GRGVQLRSLLNNNK-Q--SEFSAPLTSFDWNEADPKRLGTSSIDTTCTIWDIEKGEVDTQLIAHDREVYDIAWGGLGVFATVSADGSVRVFDLRDKEHSTIIYES------------------PQP-DTPLLRLGWNRQDPRYMATILQDSPKVVILDIRYPTLPVAELCRHQAPVNALAWAPHSAQHICTAGDDS-----------QALIWDVSAV----------------GGGNNANAAAGGGASDVSLDPILAYGAASEVNQLQWSSAQPDWVAICFGNKTQILRV   [348]
'gi|37719680|gb|AAR01949.1| WD40 repeat protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------M---GGVGEGDAWADQEQGNGGGSRGVGG--------------------------GGGEAKRSEIYTYEAAWHIYAMNWSVRRD----KKYRLAIASLLEQVTNRVEVVQLD---EASGDIA--PVLTFDHQYPPTKTMFMPDPHA---LR---PDLLATSADHLRIWRIPSSDDAEDGAASANNNNGSVRCNGTQQPGIELRSELNGNR-N--SDYCGPLTSFDWNDADPRRIGTSSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVFASVSADGSVRVFDLRDKEHSTIIYESGSGGSSGGGSNSGAGDGGTAS-PTPLVRLGWNKQDPRYMATIIMDSPKVVVLDIRYPTLPVVELHRHHAPVNAIAWAPHSSCHICTAGDDM-----------QALIWDLSSMGTGSNGSGNGNGNTAAGAAAEG-----------GLDPILAYTAGAEIEQLQWSATQPDWVAIAFANKLQILRV   [416]
'gi|50909083|ref|XP 466030.1| putative WD40 repeat protein [Oryza sativa (japonica cultivar-group)] >gi|49388269|dbj|BAD25387.1|'    ------------------------------------------------------------------------------------------------------------------------------MGGGGAGGDGEAWADQEQGNGGGR---GG--------------------------GGGEAKRSEIYTYEAGWHIYGMNWSVRRD----KKYRLAIASLLEQHNNHVQVVQLD---ESSGDIA--PVLTFDHPYPPTKTMFVPDPHS---VR---PDLLATSADHLRIWRIPSPDEAA-AAAAASSNSGSVRCNGTASPDVELRCELNGNR-N--SDYCGPLTSFDWNDADPRRIGTSSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVFASVSADGSVRVFDLRDKEHSTIIYESGSGGS----SNSAGADGGAAS-PTPLVRLGWNKQDPRYMATIIMDSPKVVVLDIRYPTLPVVELHRHHSPVNAIAWAPHSSCHICTAGDDS-----------QALIWDLSSMGTGSNNGGNGNGNAAAAAAAEG-----------GLDPILAYTAGAEIEQLQWSATQPDWVAIAFSTKLQILRV   [411]
;
END;


BEGIN CODONS;
	CODESET  * UNTITLED = Universal: all ;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
	EXSET * UNTITLED  =  1-189 207-218 239-245 249-250 269-280 299-325 337-340 427-450 519-529 538-573;
END;


BEGIN MacClade;
	Version 4.0  87;
	LastModified -1021970607;
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	Singles 100;
	Editor 00011001111111100100010010 '1' '8' Geneva '10' '490' '1' all;
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	ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000;
	ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ;
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	ChartWindowPosition  '52' '30' '942' '1220';
	StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220';
	WindowOrder  Data List Characters;
	OtherSymbols &/ 00 ?-;
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	Salmo 00000001;
	EditorFile  '4';
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	PrettyPrint 10;
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	TreeWindow 0000;
	Continuous  '0' '3' 1;
	Calculations 0000001;
	SummaryMode  '0' '0' 0;
	Charts  Geneva '9' (normal) 0010;
	NexusOptions  '0' '0' '50' 001011001;
	TipLabel  '1';
	TreeFont  Geneva '9' (normal);
	TreeShape  1.0 1.0 0100;
	TraceLabels 0101;
	ChartColors  '0' '0' '65535' '9' '0' 1;
	ChartBiggestSpot 1;
	ChartPercent 10;
	ChartBarWidth  '10' 1;
	ChartVerticalAxis 10101;
	ChartMinMax  '0';
	TraceAllChangesDisplay  '1' 1;
	BarsOnBranchesDisplay  '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101;
	ContinuousBranchLabels 0;
	AllStatesBranchLabels 1;
	IndexNotation  '2' 1;
	PrintTree  10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '256' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000;
	MatchChar 00 .;
	EntryInterpretation 01;
	ColorOptions 00;
	TreeTools  '0' '5' '4' '0' '10' '4' '0' 00100111111101110;
	EditorTools  '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011;
	PairAlign  '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010;
	BothTools  '1';
END;