query gene name (CHR37.pt1): global / partial tree
File name:
70 aa residues 69 OTU included.
Results of partial trees included / Partial tree including Ppa.
Assemble Job Id:
Tree job id: ug7e9T
BP values out of 100
Analyzed by tomoakin@kenroku.kanazawa-u.ac.jp
Date: Tue Apr 10 22:02:58 JST 2007
XP_828168 Trypanosoma brucei TREU927 EAN79056 Trypanosoma brucei DNA repair protein/DNA repair protein, putative
CAJ04924 Leishmania major DNA repair protein, putative
XP_821558 Trypanosoma cruzi strain CL Brener EAN99707 Trypanosoma cruzi DNA repair protein/DNA repair protein, putative
62100
NP_701848 Plasmodium falciparum 3D7 AAN36572 DNA repair protein rhp16, putative/DNA repair protein rhp16, putative
XP_726017 Plasmodium yoelii yoelii str. 17XNL XP_678598 Plasmodium berghei strain ANKA EAA17582 Plasmodium yoelii yoelii CAH97553 Plasmodium berghei nucleotide excision repair protein/DNA repair protein rhp16 /similar nucleotide excision repair
100
XP_665565 Cryptosporidium hominis TU502 EAL35335 Cryptosporidium hominis DNA repair protein rhp16/DNA repair protein rhp16
XP_625623 Cryptosporidium parvum Iowa II EAK87701 Cryptosporidium parvum Swi2/Snf2 ATpase,Rad16 ortholog /Swi2/Snf2 ATpase,Rad16 ortholog
10075
Smo_CHR37_236_2 Smo_CHR37_317_2 Smo_CHR37_12_1
40
AT1G05120 = NP_172004 AAB71467 ATP binding/ATP-dependent helicase/DNA binding /helicase/nucleic acid binding /ubiquitin-protein ligase/zinc ion binding /Similar to Saccharomyces RAD16 (gb|X78993).
AT1G02670 = NP_171767 ATP binding/ATP-dependent helicase/DNA binding /helicase/nucleic acid binding
AAG10633 Arabidopsis thaliana Similar nucleotide excision repair proteins
10057
XP_478364 Oryza sativa (japonica cultivar-group) XP_506364 BAD31171 putative DNA repair protein/PREDICTED P0580A11.104 gene product /putative DNA repair protein rhp16
91
XP_370517 Magnaporthe grisea 70-15 hypothetical protein MG07014.4
XP_661876 Aspergillus nidulans FGSC A4 EAA58940 hypothetical protein AN4272.2/hypothetical protein AN4272.2
XP_749126 Aspergillus fumigatus Af293 EAL87088 DNA excision repair protein/DNA excision repair protein (Rad16), putative
BAE60231 Aspergillus oryzae unnamed protein product
7298
XP_386080 Gibberella zeae PH-1 EAA75549 hypothetical protein FG05904.1/hypothetical protein FG05904.1
EAQ85895 Chaetomium globosum CBS 148.51 hypothetical protein CHGG_07148
XP_322952 Neurospora crassa XP_961377 Neurospora crassa N150 CAC18166 Neurospora crassa EAA32141 hypothetical protein ( (AL451013) probable nucleotide exsicion repair protein RAD16/hypothetical protein ( (AL451013) probable nucleotide exsicion re
76499396
NP_983750 Eremothecium gossypii AAS51574 Ashbya gossypii ATCC 10895 ADL345Cp/ADL345Cp
XP_504855 Yarrowia lipolytica CLIB122 CAG77657 hypothetical protein/unnamed protein product
XP_721468 Candida albicans SC5314 XP_721196 EAL02388 EAL02669 hypothetical protein CaO19_2969/hypothetical protein CaO19_10486 /hypothetical protein CaO19.10486 /hypothetical protein CaO19.2969
XP_451940 Kluyveromyces lactis NRRL Y-1140 CAH02333 unnamed protein product/unnamed protein product
XP_448558 Candida glabrata CBS 138 CAG61521 unnamed protein product/unnamed protein product
NP_009672 Saccharomyces cerevisiae P31244 CAA46974 AAA34930 CAA55616 AAA34931 CAA85071 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair; subunit of Nucleotide Excision Repair Fact
7777415090
NP_587701 Schizosaccharomyces pombe 972h- P79051 Schizosaccharomyces pombe CAA21065 hypothetical protein SPCC613.13c/RHP16_SCHPO DNA repair protein rhp16 (RAD16 homolog)/SPCC613.13c
6342
XP_570758 Cryptococcus neoformans var. neoformans JEC21 XP_570757 EAL20677 Cryptococcus neoformans var. neoformans B-3501A EAL20678 AAW43450 Cryptococcus neoformans var. neoformans JEC21 AAW43451 DNA repair protein rad16/DNA repair protein rad16
Smo_CHR37720297204_1
XP_759410 Ustilago maydis 521 EAK84190 hypothetical protein UM03263.1/hypothetical protein UM03263.1
765194
AT1G61140 = NP_176309 AAB71480 ATP binding/ATP-dependent helicase/DNA binding /helicase/nucleic acid binding /protein binding /ubiquitin-protein ligase/zinc ion binding /Similar to transcription factor gb|Z46606|1658307 and others
XP_463462 Oryza sativa (japonica cultivar-group) BAD52845 BAD52846 putative helicase-like transcription factor/putative ATPase /putative ATPase
47
XP_473992 Oryza sativa (japonica cultivar-group) CAE04253 OSJNBa0089N06.14/OSJNBa0089N06.14
AT3G20010 = NP_188635 BAB03166 ATP binding/ATP-dependent helicase/DNA binding /helicase/nucleic acid binding /protein binding /ubiquitin-protein ligase/zinc ion binding /transcription factor-like protein
AT1G50410 = NP_564568 AAF87890 AAK64043 AAN13207 ATP binding/ATP-dependent helicase/DNA binding /helicase/nucleic acid binding /protein binding /ubiquitin-protein ligase/zinc ion binding /Similar tp transcription factors /putative DNA-binding protei
94
XP_507149 Oryza sativa (japonica cultivar-group) XP_480373 BAD17038 PREDICTED P0455A11.14 gene product/putative SNF2 domain-containing protein /putative SNF2 domain-containing protein
634261
Ppa_CHR37_91_1
Ppa_CHR37_212_1
10016
Smo_CHR37_87_1 Smo_CHR37_181_1
Smo_CHR37_20_2 Smo_CHR37_98_2
4686
NP_596602 Schizosaccharomyces pombe 972h- CAA18870 Schizosaccharomyces pombe hypothetical protein SPBC23E6.02/SPBC23E6.02
AT5G05130 = NP_196132 Q9FF61 BAB11535 AAM13210 AAP68241 ATP binding/ATP-dependent helicase/DNA binding /helicase/nucleic acid binding /protein binding /ubiquitin-protein ligase/zinc ion binding /SM3L1_ARATH Putative SWI/SNF-related matrix-associated
Smo_CHR37_366_1
Smo_CHR37_345_1
100
Smo_CHR37_35_1 Smo_CHR37_202_1
8490
Ppa_CHR37_206_1
98
XP_215728 Rattus norvegicus PREDICTED: similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3
XP_534300 Canis familiaris Q95216 Oryctolagus cuniculus AAC18656 PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a3 /SMRA3_RABIT SWI/SNF-related matrix-associated actin-dependent regulator of chromatin
NP_033236 Mus musculus Q6PCN7 AAB64175 AAH57116 AAH59240 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3 isoform 1 /SMRA3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin
2026
NP_003062 Homo sapiens NP_620636 Q14527 AAA67436 CAA86571 CAA86572 CAD10805 AAH44659 BAD92289 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a3 /SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a3 /SM
100
AAI08610 Xenopus laevis Unknown (protein for MGC:131155)
9991
gnl|CMER|CMR259C_probable_DNA_repair_protein_RAD5
EAL23625 Cryptococcus neoformans var. neoformans B-3501A hypothetical protein CNBA2720
XP_566693 Cryptococcus neoformans var. neoformans JEC21 Q5KPG8 Filobasidiella neoformans AAW40874 Cryptococcus neoformans var. neoformans JEC21 DNA repair protein RAD5/RAD5_CRYNE DNA repair protein RAD5/DNA repair protein RAD5, putative
10037
NP_001018178 Schizosaccharomyces pombe 972h- P36607 Schizosaccharomyces pombe CAA52686 zinc finger protein; zf-C3HC4 type (RING finger); ubiquitin ligase (E3)/RAD5_SCHPO DNA repair protein rad5/rad8
XP_657648 Aspergillus nidulans FGSC A4 Q5BHD6 Emericella nidulans EAA65363 Aspergillus nidulans FGSC A4 hypothetical protein AN0044.2/RAD5_EMENI DNA repair protein rad5/hypothetical protein AN0044.2
XP_753393 Aspergillus fumigatus Af293 Q4WVM1 Aspergillus fumigatus EAL91355 Aspergillus fumigatus Af293 DNA excision repair protein Rad5/RAD5_ASPFU DNA repair protein rad5/DNA excision repair protein (Rad5), putative
BAE62970 Aspergillus oryzae unnamed protein product
9669
XP_359745 Magnaporthe grisea 70-15 hypothetical protein MG05032.4
XP_329875 Neurospora crassa XP_958511 Neurospora crassa N150 Q7S1P9 Neurospora crassa EAA29275 hypothetical protein/hypothetical protein /RAD5_NEUCR DNA repair protein rad-5/hypothetical protein
EAQ88881 Chaetomium globosum CBS 148.51 hypothetical protein CHGG_05500
62
XP_382900 Gibberella zeae PH-1 Q4IJ84 Gibberella zeae EAA69448 Gibberella zeae PH-1 hypothetical protein FG02724.1/RAD5_GIBZE DNA repair protein RAD5 /hypothetical protein FG02724.1
8186999229
CAE04094 Oryza sativa (japonica cultivar-group) OSJNBa0096F01.3
AT5G43530 = NP_199166 Q9FIY7 BAB11616 ATP binding/ATP-dependent helicase/DNA binding /helicase/nucleic acid binding /protein binding /ubiquitin-protein ligase/zinc ion binding /SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent r
81
Smo_CHR37_222_2
Ppa_CHR37_11_1
XP_466047 Oryza sativa (japonica cultivar-group) BAD25407 putative DNA repair protein rad8/putative DNA repair protein rad8
AAS79594 Ipomoea trifida putative DNA repair protein
70
AT5G22750 = NP_197667 Q9FNI6 BAB11681 RAD5; ATP binding/ATP-dependent helicase/DNA binding /helicase/nucleic acid binding /protein binding /ubiquitin-protein ligase/zinc ion binding /SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-depen
7572599537131013
NP_595178 Schizosaccharomyces pombe 972h- Q10332 Schizosaccharomyces pombe CAB46673 DEAD/DEAH box helicase /YBMA_SCHPO Probable ATP-dependent helicase C582.10c in chromosome II/DEAD/DEAH box helicase; involved in nucleotide-excision repair; involve
585948
0.100