query gene name (HDA6.pt3): global / partial tree
File name:
100 aa residues 281 OTU included.
Results of partial trees included / Partial tree including Ppa.
Assemble Job Id:
Tree job id: tj1tra
BP values out of 100
Analyzed by chycheng@nibb.ac.jp
Date: Thu Jun 08 14:33:16 JST 2006
YP_119990 Nocardia farcinica IFM 10152 BAD58626 putative acetoin dehydrogenase/putative acetoin dehydrogenase
ZP_00380214 Brevibacterium linens BL2 COG0123: Deacetylases, including yeast histone deacetylase and acetoin utilization protein
ZP_01137872 Acidothermus cellulolyticus 11B EAR31255 putative acetoin dehydrogenase/putative acetoin dehydrogenase
YP_290763 Thermobifida fusca YX AAZ56740 putative acetoin utilization protein/putative acetoin utilization protein
ZP_00658186 Nocardioides sp. JS614 EAO07056 Histone deacetylase superfamily/Histone deacetylase superfamily
ZP_00574152 Frankia sp. EAN1pec EAN11608 Histone deacetylase superfamily/Histone deacetylase superfamily
YP_482585 Frankia sp. CcI3 ABD12856 histone deacetylase superfamily/histone deacetylase superfamily
983727
ZP_00618894 Kineococcus radiotolerans SRS30216 EAM73356 Histone deacetylase superfamily/Histone deacetylase superfamily
NP_825906 Streptomyces avermitilis MA-4680 BAC72441 acetoin dehydrogenase/putative acetoin dehydrogenase
NP_627540 Streptomyces coelicolor A3(2) CAB45364 acetoin utilization protein/putative acetoin utilization protein
97322331
ZP_00994108 Janibacter sp. HTCC2649 EAQ00362 putative acetoin utilization protein/putative acetoin utilization protein
4111
ZP_00414725 Arthrobacter sp. FB24 EAL94437 Histone deacetylase superfamily/Histone deacetylase superfamily
3493
YP_041199 Staphylococcus aureus subsp. aureus MRSA252 Q6GFX3 CAG40804 histone deacetylase family protein/ACUC_STAAR Acetoin utilization protein acuC /histone deacetylase family protein
YP_494375 Staphylococcus aureus subsp. aureus USA300 NP_372259 Staphylococcus aureus subsp. aureus Mu50 YP_417065 Staphylococcus aureus RF122 YP_043781 Staphylococcus aureus subsp. aureus MSSA476 YP_500353 Staphylococcus aureus subsp. aureus NC
100
YP_253102 Staphylococcus haemolyticus JCSC1435 BAE04496 acetoin utilization protein/acetoin utilization protein
YP_301118 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 BAE18173 acetoin utilization protein/acetoin utilization protein
Q56195 Staphylococcus xylosus CAA64714 ACUC_STAXY Acetoin utilization protein acuC/acuC
6460100
ZP_00540090 Exiguobacterium sibiricum 255-15 EAM86733 Histone deacetylase superfamily/Histone deacetylase superfamily
ZP_00602377 Rubrobacter xylanophilus DSM 9941 EAN34572 Histone deacetylase superfamily/Histone deacetylase superfamily
YP_359046 Carboxydothermus hydrogenoformans Z-2901 ABB14015 acetoin utilization protein AcuC/acetoin utilization protein AcuC
74
YP_176258 Bacillus clausii KSM-K16 BAD65297 acetoin utilization protein AcuC/acetoin utilization protein AcuC
NP_244103 Bacillus halodurans C-125 BAB06956 acetoin dehydrogenase/acetoin dehydrogenase
YP_148662 Geobacillus kaustophilus HTA426 BAD77094 acetoin utilization protein/acetoin utilization protein
ZP_01172971 Bacillus sp. NRRL B-14911 EAR64324 acetoin utilization protein/acetoin utilization protein
84
ZP_00740751 Bacillus thuringiensis serovar israelensis ATCC 35646 NP_834368 Bacillus cereus ATCC 14579 AAP11569 EAO54976 Bacillus thuringiensis serovar israelensis ATCC 35646 Acetoin utilization acuC protein/Acetoin utilization acuC protein /Acet
YP_038712 Bacillus thuringiensis serovar konkukian str. 97-27 AAT63630 acetoin utilization protein/acetoin utilization protein
ZP_00394995 Bacillus anthracis str. A2012 ZP_00236127 Bacillus cereus G9241 NP_981097 Bacillus cereus ATCC 10987 YP_030810 Bacillus anthracis str. Sterne NP_847116 Bacillus anthracis str. Ames YP_021561 Bacillus anthracis str. 'Ames Ancestor'
ZP_01182741 Bacillus weihenstephanensis KBAB4 EAR77727 Histone deacetylase superfamily/Histone deacetylase superfamily
4763100
ZP_01180363 Bacillus cereus subsp. cytotoxis NVH 391-98 EAR70920 Histone deacetylase superfamily/Histone deacetylase superfamily
93
NP_693144 Oceanobacillus iheyensis HTE831 BAC14179 acetoin utilization protein/acetoin utilization protein
36
YP_080262 Bacillus licheniformis ATCC 14580 YP_092676 AAU24624 AAU41983 acetoin dehydrogenase/AcuC /acetoin dehydrogenase /AcuC
NP_390849 Bacillus subtilis subsp. subtilis str. 168 P39067 Bacillus subtilis AAA68284 AAC00394 CAB14949 Bacillus subtilis subsp. subtilis str. 168 acetoin dehydrogenase/ACUC_BACSU Acetoin utilization protein acuC /acetoin utilization protein/ace
5836643550
Ppa_HDA6_3_1
72637683
YP_004079 Thermus thermophilus HB27 AAS80452 putative T-histone deacetylase/putative T-histone deacetylase
YP_143741 Thermus thermophilus HB8 AAP04525 Thermus caldophilus BAD70298 Thermus thermophilus HB8 acetoin utilization protein AcuC (putative T-histone deacetylase)/putative T-histone deacetylase /acetoin utilization protein AcuC (putative T-histo
100
YP_446446 Salinibacter ruber DSM 13855 ABC44074 acetoin utilization protein acuC/acetoin utilization protein acuC
9733
ZP_01154133 Methanosaeta thermophila PT EAR48283 Histone deacetylase superfamily/Histone deacetylase superfamily
2519
YP_357062 Pelobacter carbinolicus DSM 2380 ABA88892 histone deacetylase/AcuC/AphA family protein /histone deacetylase/AcuC/AphA family protein
ZP_00550883 Desulfuromonas acetoxidans DSM 684 EAM71632 Histone deacetylase superfamily:IMP dehydrogenase/GMP reductase /Histone deacetylase superfamily:IMP dehydrogenase/GMP reductase
100
ZP_01142293 Geobacter uraniumreducens Rf4 EAR35786 histone deacetylase/AcuC/AphA family protein /histone deacetylase/AcuC/AphA family protein
YP_384695 Geobacter metallireducens GS-15 ABB31970 Histone deacetylase superfamily/Histone deacetylase superfamily
NP_952275 Geobacter sulfurreducens PCA AAR34598 histone deacetylase/AcuC/AphA family protein /histone deacetylase/AcuC/AphA family protein
1008798
AAZ32522 uncultured euryarchaeote Alv-FOS4 deacetylase
AT1G08460 = NP_563817 AAK95258 AAL16299 AAM19887 AAM49769 histone deacetylase/At1g08460/T27G7_7 /At1g08460/T27G7_7 /At1g08460/T27G7_7 /HDA8
AAU90088 Oryza sativa (japonica cultivar-group) unknown protein
AAU90087 Oryza sativa (japonica cultivar-group) unknown protein
10048
ABD32780 Medicago truncatula Histone deacetylase superfamily
100
ZP_00486698 Burkholderia pseudomallei 668 YP_331748 Burkholderia pseudomallei 1710b ZP_00499133 root ZP_01096361 ZP_00939908 Burkholderia pseudomallei 406e ZP_00493737 root ZP_00475870 ZP_01027363 Burkholderia mallei 10229 YP_101966 Burkhol
ZP_00423342 Burkholderia vietnamiensis G4 EAM30025 Histone deacetylase superfamily/Histone deacetylase superfamily
ZP_00962086 Sulfitobacter sp. NAS-14.1 EAP81500 deacetylase/probable acetylpolyamine aminohydrolase /deacetylase /probable acetylpolyamine aminohydrolase
ZP_00956777 Sulfitobacter sp. EE-36 EAP82748 deacetylase/probable acetylpolyamine aminohydrolase /deacetylase /probable acetylpolyamine aminohydrolase
99
4477_Cre
ZP_00961256 Roseovarius nubinhibens ISM EAP75496 histone deacetylase/AcuC/AphA family protein /histone deacetylase/AcuC/AphA family protein
ZP_01058153 Roseobacter sp. MED193 EAQ43975 histone deacetylase/AcuC/AphA family protein /histone deacetylase/AcuC/AphA family protein
3834
YP_442634 Burkholderia thailandensis E264 ABC37685 histone deacetylase family protein/histone deacetylase family protein
ZP_00470464 root YP_333884 Burkholderia pseudomallei 1710b ZP_00494409 root ZP_01009618 Burkholderia mallei SAVP1 ZP_00477743 root ZP_00501794 ZP_00941672 Burkholderia pseudomallei 406e ZP_00936011 Burkholderia mallei JHU ZP_00895099 root
91
YP_369470 Burkholderia sp. 383 ABB08826 Histone deacetylase superfamily/Histone deacetylase superfamily
ZP_00690798 Burkholderia ambifaria AMMD EAO43062 Histone deacetylase superfamily/Histone deacetylase superfamily
ZP_00979820 Burkholderia cenocepacia PC184 COG0123: Deacetylases, including yeast histone deacetylase and acetoin utilization protein
37
ZP_00986757 Burkholderia dolosa AUO158 COG0123: Deacetylases, including yeast histone deacetylase and acetoin utilization protein
219469
YP_508952 Jannaschia sp. CCS1 ABD53927 histone deacetylase superfamily/histone deacetylase superfamily
BAD88603 Klebsiella aerogenes deacetylase
NP_929599 Photorhabdus luminescens subsp. laumondii TTO1 CAE14646 hypothetical protein plu2353/unnamed protein product
49
YP_260466 Pseudomonas fluorescens Pf-5 AAY92630 histone deacetylase family protein/histone deacetylase family protein
ZP_00137191 Pseudomonas aeruginosa UCBPP-PA14 COG0123: Deacetylases, including yeast histone deacetylase and acetoin utilization protein
NP_252463 Pseudomonas aeruginosa PAO1 AAG07161 probable acetylpolyamine aminohydrolase/probable acetylpolyamine aminohydrolase
100295311161931415921
XP_762912 Theileria parva strain Muguga EAN30629 Theileria parva hypothetical protein TP03_0788/hypothetical protein TP03_0788
XP_955470 Theileria annulata strain Ankara CAI75994 Theileria annulata hypothetical protein TA18230/histone deacetylase family protein, putative
100
Ppa_HDA6_5_1
Ppa_HDA6_8_1
93
AAM93212 Zea mays AAM93213 AAM93214 AAM93215 histone deacetylase HDA110 isoform 1/histone deacetylase HDA110 isoform 2 /histone deacetylase HDA110 isoform 3 /histone deacetylase HDA110 isoform 4
BAC42833 Arabidopsis thaliana putative histone deacetylase
8483
NP_034542 Mus musculus Q9Z2V6 AAF31418 AAD09834 BAC65607 AAH60609 BAE27204 BAE33201 histone deacetylase 5/HDAC5_MOUSE Histone deacetylase 5 (HD5) (Histone deacetylase mHDA1)/histone deacetylase 5 /histone deacetylase mHDA1 /mKIAA0600 protein /Histone
BAA91545 Homo sapiens unnamed protein product
XP_234063 Rattus norvegicus BAD32295 Mus musculus PREDICTED: similar to mKIAA0744 protein/mKIAA0744 protein
XP_518986 Pan troglodytes NP_478056 Homo sapiens NP_848512 NP_848510 Q9UKV0 AAK66821 BAC04630 AAO27363 CAD30851 AAI11736 PREDICTED: similar to histone deacetylase 9 isoform 5; MEF-2 interacting transcription repressor (MITR) protein; histone deacet
973452
NP_989644 Gallus gallus P83038 BAB60957 histone deacetylase 4/HDAC4_CHICK Histone deacetylase 4 (HD4) /histone deacetylase-4
XP_343630 Rattus norvegicus XP_849514 Canis familiaris PREDICTED: similar to Histone deacetylase 4/PREDICTED: similar to Histone deacetylase 4 (HD4)
BAA22957 Homo sapiens KIAA0288 protein
XP_595731 Bos taurus PREDICTED: similar to Histone deacetylase 4 (HD4)
605690100
XP_693858 Danio rerio PREDICTED: similar to Histone deacetylase 6 (HD6) (Histone deacetylase mHDA2)
XP_310554 Anopheles gambiae str. PEST XP_565819 EAL41174 EAA06256 ENSANGP00000007396/ENSANGP00000027638 /ENSANGP00000027638 /ENSANGP00000007396
NP_727842 Drosophila melanogaster NP_573017 NP_727843 AAD21090 AAF48443 AAN09661 AAN09662 AAO45222 HDAC6 CG6170-PB, isoform B/HDAC6 CG6170-PA, isoform A /HDAC6 CG6170-PC, isoform C /histone deacetylase HDA2 /CG6170-PA, isoform A /CG6170-PB, isoform B
EAL32252 Drosophila pseudoobscura GA19406-PA
99955630
AT5G61060 = NP_200914 BAB10370 AAM13986 AAM53342 AAN15392 histone deacetylase/unnamed protein product /putative histone deacetylase /histone deacetylase-like protein /histone deacetylase-like protein
XP_479060 Oryza sativa (japonica cultivar-group) BAC84464 putative histone deacetylase/putative histone deacetylase
AAP92528 Zea mays HDA1
999736
XP_758249 Ustilago maydis 521 EAK83157 hypothetical protein UM02102.1/hypothetical protein UM02102.1
NP_983880 Eremothecium gossypii AAS51704 Ashbya gossypii ATCC 10895 ADL216Cp/ADL216Cp
XP_454328 Kluyveromyces lactis NRRL Y-1140 CAG99415 unnamed protein product/unnamed protein product
XP_447854 Candida glabrata CBS 138 CAG60803 unnamed protein product/unnamed protein product
88100
XP_504372 Yarrowia lipolytica CLIB122 CAG79971 hypothetical protein/unnamed protein product
3340
AAK55655 Candida albicans histone deacetylase HDA1
XP_718366 Candida albicans SC5314 XP_718271 EAK99342 EAK99440 putative class II histone deacetylase subunit Hda1p/putative class II histone deacetylase subunit Hda1p /likely class II histone deacetylase subunit Hda1p /likely class II histone deacet
10070143619
ZP_00599665 Rubrobacter xylanophilus DSM 9941 EAN37243 Histone deacetylase superfamily/Histone deacetylase superfamily
AAU43699 uncultured archaeon GZfos26D8 acetoin utilization protein
AAU82696 uncultured archaeon GZfos19A5 acetoin utilization protein
100
AAU84294 uncultured archaeon GZfos9D1 acetoin utilization protein
100
ZP_01154587 Methanosaeta thermophila PT EAR47743 Histone deacetylase superfamily/Histone deacetylase superfamily
YP_462208 Syntrophus aciditrophicus SB ABC78040 histone deacetylase family protein/histone deacetylase family protein
251710
YP_002647 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 AAS71284 acetoin- histone deacetylase family/acetoin- histone deacetylase family
NP_711096 Leptospira interrogans serovar Lai str. 56601 AAN48114 histone deacetylase family protein/histone deacetylase family protein
100
YP_502193 Methanospirillum hungatei JF-1 ABD40474 histone deacetylase superfamily/histone deacetylase superfamily
48
YP_502398 Methanospirillum hungatei JF-1 ABD40679 histone deacetylase superfamily/histone deacetylase superfamily
NP_614338 Methanopyrus kandleri AV19 AAM02268 Predicted deacetylase/Predicted deacetylase
NP_068969 Archaeoglobus fulgidus DSM 4304 O30107 Archaeoglobus fulgidus AAB91099 Archaeoglobus fulgidus DSM 4304 acetylpolyamine aminohydrolase (aphA)/Y130_ARCFU Hypothetical protein AF0130/acetylpolyamine aminohydrolase (aphA)
38992711126833
YP_254925 Sulfolobus acidocaldarius DSM 639 AAY79632 histone deacetylase/histone deacetylase
NP_341604 Sulfolobus solfataricus P2 AAK40394 Acetylpolyamine aminohydrolase/Acetylpolyamine aminohydrolase
NP_378307 Sulfolobus tokodaii str. 7 BAB67416 hypothetical acetoin utilization acuC protein/362aa long hypothetical acetoin utilization acuC protein
559936
YP_167402 Silicibacter pomeroyi DSS-3 AAV95443 acetoin utilization protein AcuC/acetoin utilization protein AcuC
ZP_01034958 Roseovarius sp. 217 EAQ26033 acetoin utilization protein AcuC/acetoin utilization protein AcuC
ZP_01003961 Loktanella vestfoldensis SKA53 EAQ06096 putative Acetoin utilization protein/putative Acetoin utilization protein
YP_511216 Jannaschia sp. CCS1 ABD56191 histone deacetylase superfamily/histone deacetylase superfamily
75
ZP_00915831 Rhodobacter sphaeroides ATCC 17025 EAP62875 acetoin utilization protein AcuC/acetoin utilization protein AcuC
ZP_00918481 Rhodobacter sphaeroides ATCC 17029 EAP68208 acetoin utilization protein AcuC/acetoin utilization protein AcuC
YP_352453 Rhodobacter sphaeroides 2.4.1 ABA78552 putative Acetoin utilization protein/putative Acetoin utilization protein
8799545998
NP_213698 Aquifex aeolicus VF5 1C3R Aquifex aeolicus 1C3P 1C3S 1C3R AAC07100 Aquifex aeolicus VF5 acetoin utilization protein/B Chain B, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A /A Chain A, Crystal Structure Of An Hdac H
66
AT5G63110 = NP_201116 BAB10553 AAL60022 AAM65853 AAN13198 HDA6 (HISTONE DEACETYLASE 6); histone deacetylase/histone deacetylase /putative histone deacetylase /histone deacetylase /putative histone deacetylase
AAG28475 Arabidopsis thaliana putative histone deacetylase
100
AAU82113 Triticum aestivum histone deacetylase
XP_481792 Oryza sativa (japonica cultivar-group) BAD03280 putative histone deacetylase/putative histone deacetylase
AAD10139 Zea mays AAL33653 histone deacetylase/histone deacetylase
4410083
AT5G35600 = NP_198410 BAB09994 AAM49768 histone deacetylase/histone deacetylase /HDA7
76
AAK01712 Oryza sativa (indica cultivar-group) histone deacetylase HD1
XP_464641 Oryza sativa (japonica cultivar-group) XP_464643 XP_464638 AAP47172 AAP47173 BAD17681 BAD17683 BAD25048 BAD25051 BAD25053 putative histone deacetylase HDAC3/putative histone deacetylase HDAC3 /histone deacetylase HDAC3 /histone deacetylase
100
AAP47171 Oryza sativa (japonica cultivar-group) BAD68730 BAD68731 histone deacetylase HDAC1/histone deacetylase HDAC1 /putative histone deacetylase HDAC1
P56521 Zea mays AAC50038 AAK67142 HDAC_MAIZE Probable histone deacetylase (RPD3 homolog)/putative histone deacetylase RPD3 /histone deacetylase HDA101
69
AAF82385 Mesembryanthemum crystallinum histone deacetylase
AT4G38130 = NP_195526 O22446 AAB66486 CAB37553 CAB80478 AAG28474 AAM13152 AAP68312 HD1; histone deacetylase/HDAC_ARATH Histone deacetylase (HD)/histone deacetylase /Histone deacetylase /Histone deacetylase /putative histone deacetylase /histone deac
488033
ABA91949 Oryza sativa (japonica cultivar-group) Histone deacetylase family, putative
Ppa_HDA6_1_1 Ppa_HDA6_7_1
39
Smo_HDA6_3_2
185115
gnl|CMER|CMJ129C_histone_deacetylase
4
CAE69339 Caenorhabditis briggsae Hypothetical protein CBG15416
XP_569971 Cryptococcus neoformans var. neoformans JEC21 EAL21815 Cryptococcus neoformans var. neoformans B-3501A AAW42664 Cryptococcus neoformans var. neoformans JEC21 histone deacetylase 1-1 (hd1)/hypothetical protein CNBC5170 /histone deacetyla
XP_572517 Cryptococcus neoformans var. neoformans JEC21 EAL18739 Cryptococcus neoformans var. neoformans B-3501A AAW45210 Cryptococcus neoformans var. neoformans JEC21 histone deacetylase 1 (hd1)/hypothetical protein CNBI3250 /histone deacetylase
8442
CAE64376 Caenorhabditis briggsae Hypothetical protein CBG09063
CAE60876 Caenorhabditis briggsae Hypothetical protein CBG04588
NP_506599 Caenorhabditis elegans O17695 CAB03984 Histone DeAcetylase family member (hda-1)/HDA1_CAEEL Histone deacetylase 1 /Hypothetical protein C53A5.3
10081371
XP_771229 Giardia lamblia ATCC 50803 EAA41057 AAU89077 Giardia intestinalis histone deacetylase/GLP_447_26594_25191 /histone deacetylase HDAC
NP_493026 Caenorhabditis elegans CAB03224 CAB03240 Histone DeAcetylase family member (hda-3)/Hypothetical protein R06C1.1 /Hypothetical protein R06C1.1
CAE71712 Caenorhabditis briggsae Hypothetical protein CBG18689
10012
NP_999711 Strongylocentrotus purpuratus XP_798972 P56518 AAB87685 histone deacetylase/PREDICTED: similar to histone deacetylase 1 /HDAC1_STRPU Histone deacetylase 1 (HD1)/histone deacetylase
P70288 Mus musculus AAC52889 HDAC2_MOUSE Histone deacetylase 2 (HD2) (YY1 transcription factor-binding protein)/transcriptional regulator homolog RPD3
AAX29896 synthetic construct AAH31055 Homo sapiens histone deacetylase 2/HDAC2 protein
NP_001518 Homo sapiens AAC50814 histone deacetylase 2/transcriptional regulator homolog RPD3
XP_877431 Bos taurus PREDICTED: similar to Histone deacetylase 2 (HD2) isoform 4
XP_878224 Bos taurus XP_878030 PREDICTED: similar to Histone deacetylase 2 (HD2) isoform 10/PREDICTED: similar to Histone deacetylase 2 (HD2) isoform 8
56
XP_869380 Bos taurus PREDICTED: similar to Histone deacetylase 2 (HD2) isoform 2
100
AAH54208 Xenopus laevis Hdac2 protein
53
XP_532270 Canis familiaris XP_518700 Pan troglodytes XP_342150 Rattus norvegicus NP_032255 Mus musculus NP_001005432 Xenopus tropicalis NP_990162 Gallus gallus P56519 Q92769 Homo sapiens AAB96924 Gallus gallus AAH74509 Xenopus tropicali
41184170
CAF93492 Tetraodon nigroviridis unnamed protein product
CAG09908 Tetraodon nigroviridis unnamed protein product
AAL89665 Takifugu rubripes histone deacetylase
46
NP_775343 Danio rerio AAM34645 histone deacetylase 1/histone deaceytlase 1
AAH64650 Danio rerio AAH85375 Hdac1 protein/Histone deacetylase 1
9228
Q91695 Xenopus laevis CAA55211 AAH81136 HDA1A_XENLA Probable histone deacetylase 1-A (HD1) (Maternally-expressed histone deacetylase) (HDM) (AB21)/yeast RPD3 homologue /AB21 protein
O42227 Xenopus laevis AAC60346 AAH41296 HDA1B_XENLA Probable histone deacetylase 1-B (HD1) (RPD3 homolog)/deacetylase /MGC53583 protein
40
NP_001025564 Xenopus tropicalis AAH90604 hdac1_predicted-prov protein/Hdac1_predicted-prov protein
6810
XP_576595 Rattus norvegicus PREDICTED: histone deacetylase 1
BAA08909 Homo sapiens AAX36503 synthetic construct RPD3 protein/histone deacetylase 1
38
XP_930837 Mus musculus PREDICTED: skip
34
NP_001020580 Rattus norvegicus NP_001032521 Bos taurus NP_032254 Mus musculus XP_544435 Canis familiaris XP_513092 Pan troglodytes XP_519834 XP_864716 Canis familiaris O09106 Mus musculus CAA66870 AAB68398 AAP36140 synthetic construct AA
59
P56517 Gallus gallus AAB96923 AAB99850 AAC00504 HDAC1_CHICK Histone deacetylase 1 (HD1)/histone deacetylase-1; HD-1 /histone deacetylase 1 /erythrocyte histone deacetylase
8330498053
EAL30147 Drosophila pseudoobscura GA20378-PA
CAA70455 Drosophila melanogaster AAC23917 histone deacetylase/putative histone deacetylase HDAC1
NP_647918 Drosophila melanogaster Q94517 AAC61494 AAF47924 AAL13716 Rpd3 CG7471-PA/HDAC1_DROME Histone deacetylase Rpd3 (HD) (dRPD3)/putative histone deacetylase /CG7471-PA /GM14158p
7399
XP_394976 Apis mellifera PREDICTED: similar to ENSANGP00000004321
XP_316539 Anopheles gambiae str. PEST EAA11382 ENSANGP00000004321/ENSANGP00000004321
491005920
XP_757499 Ustilago maydis 521 CAC19454 Ustilago maydis EAK81855 Ustilago maydis 521 hypothetical protein UM01352.1/histone deacetylase /hypothetical protein UM01352.1
NP_595333 Schizosaccharomyces pombe 972h- O59702 Schizosaccharomyces pombe CAA19053 AAD05211 histone deacetylase/CLR6_SCHPO Histone deacetylase clr6 (Cryptic loci regulator 6) /SPBC36.05c /putative histone deacetylase
57
XP_758212 Ustilago maydis 521 AAM15960 Ustilago maydis EAK83185 Ustilago maydis 521 hypothetical protein UM02065.1/histone deacetylase Hda1 /hypothetical protein UM02065.1
XP_571598 Cryptococcus neoformans var. neoformans JEC21 EAL20377 Cryptococcus neoformans var. neoformans B-3501A AAW44291 Cryptococcus neoformans var. neoformans JEC21 hypothetical protein/hypothetical protein CNBF1870 /conserved hypothetical pro
35
AAK55656 Candida albicans histone deacetylase RPD3
XP_715765 Candida albicans SC5314 XP_715815 EAK96751 EAK96802 putative Sin3.Rpd3 histone deacetylase complex component Rpd3p/putative Sin3.Rpd3 histone deacetylase complex component Rpd3p /potential Sin3.Rpd3 histone deacetylase complex component Rpd
100
XP_504286 Yarrowia lipolytica CLIB122 CAG79885 hypothetical protein/unnamed protein product
XP_454037 Kluyveromyces lactis NRRL Y-1140 AAK58884 Kluyveromyces lactis CAG99124 Kluyveromyces lactis NRRL Y-1140 unnamed protein product/reduced potassium dependency 3 Rpd3p /unnamed protein product
XP_460469 Debaryomyces hansenii CBS767 CAG88776 hypothetical protein DEHA0F02706g/unnamed protein product
XP_719896 Candida albicans SC5314 XP_719779 EAL00908 EAL01033 putative Sin3.Rpd3 histone deacetylase complex component Rpd3p/putative Sin3.Rpd3 histone deacetylase complex component Rpd3p /potential Sin3.Rpd3 histone deacetylase complex component Rpd
NP_987061 Eremothecium gossypii AAS54885 Ashbya gossypii ATCC 10895 AGR395Wp/AGR395Wp
XP_445032 Candida glabrata CBS 138 CAG57932 unnamed protein product/unnamed protein product
NP_014069 Saccharomyces cerevisiae P32561 AAB20328 CAA58228 CAA96263 AAT92832 Histone deacetylase; regulates transcription and silencing; Rpd3p/RPD3_YEAST Histone deacetylase RPD3 (Transcriptional regulatory protein RPD3)/RPD3 /global transcriptional
896532338932
AAK35180 Cochliobolus carbonum histone deacetylase 2
XP_964367 Neurospora crassa N150 XP_325004 Neurospora crassa EAA35131 hypothetical protein/hypothetical protein /hypothetical protein
EAQ93036 Chaetomium globosum CBS 148.51 hypothetical protein CHGG_01271
91
XP_380956 Gibberella zeae PH-1 EAA70726 hypothetical protein FG00780.1/hypothetical protein FG00780.1
3566
BAE60355 Aspergillus oryzae unnamed protein product
XP_749474 Aspergillus fumigatus Af293 EAL87436 histone deacetylase RpdA/histone deacetylase RpdA
XP_662097 Aspergillus nidulans FGSC A4 AAF80489 Emericella nidulans EAA60836 Aspergillus nidulans FGSC A4 hypothetical protein AN4493.2/histone deacetylase RpdA /hypothetical protein AN4493.2
825124125949470
XP_650263 Entamoeba histolytica HM-1:IMSS AAV33348 Entamoeba histolytica EAL44877 Entamoeba histolytica HM-1:IMSS histone deacetylase/histone deacetylase 1 /histone deacetylase, putative
4198_Cre
30
1360_Cre
gnl|CMER|CMS068C_histone_deacetylase
444
Ppa_HDA6_4_1
Smo_HDA6_12_1 Smo_HDA6_2_1
33
AAS79608 Ipomoea trifida putative histone deacetylase
AT3G44680 = NP_190054 AAN72014 AAP31920 HDA9; histone deacetylase/putative protein /At3g44680
28
CAE04901 Oryza sativa (japonica cultivar-group) OSJNBa0042I15.23
AAL33655 Zea mays histone deacetylase
1002898
AAG21919 Cryptosporidium parvum histone deacetylase
XP_625348 Cryptosporidium parvum Iowa II XP_667698 Cryptosporidium hominis TU502 CAD98610 Cryptosporidium parvum EAK87357 EAL37469 Cryptosporidium hominis RPD3/HD1 histone deacetylase /histone deacetylase /histone deacetylase /RPD3/HD1 histone
100
NP_704795 Plasmodium falciparum 3D7 AAD22407 CAD51938 Histone deacetylase/histone deacetylase /Histone deacetylase
XP_680051 Plasmodium berghei strain ANKA XP_745306 Plasmodium chabaudi chabaudi XP_724093 Plasmodium yoelii yoelii str. 17XNL EAA15658 Plasmodium yoelii yoelii CAH98271 Plasmodium berghei CAH87890 Plasmodium chabaudi Histone deacetylase/His
100
XP_764608 Theileria parva strain Muguga XP_952664 Theileria annulata strain Ankara CAI74932 Theileria annulata EAN32325 Theileria parva histone deacetylase/histone deacetylase /histone deacetylase, putative /histone deacetylase, putative
93
AAY53803 Toxoplasma gondii histone deacetylase 3
9578120
NP_113378 Guillardia theta AAK39934 histone deacetylase/histone deacetylase
NP_597645 Encephalitozoon cuniculi GB-M1 CAD26280 HISTONE DEACETYLASE 1/HISTONE DEACETYLASE 1
34
XP_647498 Dictyostelium discoideum AX4 EAL73465 Dictyostelium discoideum hypothetical protein DDB0189724/hypothetical protein DDB0189724
AAL83942 Physarum polycephalum putative histone deacetylase
4640
XP_627509 Cryptosporidium parvum Iowa II XP_668169 Cryptosporidium hominis TU502 AAG28403 Cryptosporidium parvum CAD98682 EAK90124 EAL37930 Cryptosporidium hominis histone deacetylase HDA2/Rpd3p /histone deacetylase /putative histone deacetylas
0
NP_651978 Drosophila melanogaster AAC83649 AAF52023 AAL28869 Hdac3 CG2128-PA/histone deacetylase dHDAC3 /CG2128-PA /LD23745p
XP_322018 Anopheles gambiae str. PEST EAA01056 ENSANGP00000012089/ENSANGP00000012089
58
XP_395811 Apis mellifera PREDICTED: similar to ENSANGP00000012089
100
XP_646719 Dictyostelium discoideum AX4 EAL72519 Dictyostelium discoideum hypothetical protein DDB0190980/hypothetical protein DDB0190980
XP_794761 Strongylocentrotus purpuratus PREDICTED: similar to histone deacetylase 3
NP_990078 Gallus gallus P56520 AAB96925 histone deacetylase 3/HDAC3_CHICK Histone deacetylase 3 (HD3)/histone deacetylase-3; HD-3
NP_957284 Danio rerio AAH44543 histone deacetylase 3/Similar to histone deacetylase 3
CAG00682 Tetraodon nigroviridis unnamed protein product
94
NP_034541 Mus musculus O88895 AAC36305 AAC67258 AAF28798 AAF36425 AAH61988 Rattus norvegicus BAE26265 Mus musculus histone deacetylase 3/HDAC3_MOUSE Histone deacetylase 3 (HD3)/histone deacetylase 3 /histone deacetylase 3 /histone deacetylase 3 /
XP_886845 Bos taurus XP_873571 XP_886817 XP_858153 Canis familiaris XP_535219 NP_003874 Homo sapiens XP_858113 Canis familiaris XP_886831 Bos taurus O15379 Homo sapiens AAC52038 AAB87752 AAB88240 AAB88241 AAC98927 AAC26509 AAG35536 AAH00614
7943
NP_001016883 Xenopus tropicalis AAH70873 Xenopus laevis CAJ81493 Xenopus tropicalis histone deacetylase 3/LOC432017 protein /histone deacetylase 3
671005726421
EAR99905 Tetrahymena thermophila SB210 Histone deacetylase family protein
EAS02070 Tetrahymena thermophila SB210 Histone deacetylase family protein
78
AAG00980 Tetrahymena thermophila histone deacetylase I
EAS07200 Tetrahymena thermophila SB210 Histone deacetylase family protein
10017014
EAQ93275 Chaetomium globosum CBS 148.51 hypothetical protein CHGG_01510
XP_964451 Neurospora crassa N150 XP_329983 Neurospora crassa EAA35215 hypothetical protein/hypothetical protein /hypothetical protein
XP_381529 Gibberella zeae PH-1 EAA68034 hypothetical protein FG01353.1/hypothetical protein FG01353.1
94100
AAL56814 Cochliobolus carbonum putative histone deacetylase
XP_661410 Aspergillus nidulans FGSC A4 AAF80490 Emericella nidulans EAA60014 Aspergillus nidulans FGSC A4 hypothetical protein AN3806.2/histone deacetylase HosA /hypothetical protein AN3806.2
XP_749513 Aspergillus fumigatus Af293 EAL87475 histone deacetylase HosA/histone deacetylase HosA
48
ABD76555 Aspergillus niger conserved hypothetical protein
100
XP_501501 Yarrowia lipolytica CLIB122 CAG81802 hypothetical protein/unnamed protein product
NP_594079 Schizosaccharomyces pombe 972h- O13298 Schizosaccharomyces pombe BAA23598 CAA15916 hypothetical protein SPAC3G9.07c/PHD1_SCHPO Histone deacetylase phd1 /Phd1p /hda1
NP_011321 Saccharomyces cerevisiae P53096 CAA62950 CAA96906 Histone deacetylase required for gene activation via specific deacetylation of lysines in H3 and H4 histone tails; subunit of the Set3 complex, a meiotic-specific repressor of sporulation sp
XP_444912 Candida glabrata CBS 138 CAG57805 hypothetical protein CAGL0A03322g/unnamed protein product
76
NP_985719 Eremothecium gossypii AAS53543 Ashbya gossypii ATCC 10895 AFR172Cp/AFR172Cp
77
XP_455495 Kluyveromyces lactis NRRL Y-1140 CAG98203 unnamed protein product/unnamed protein product
86
XP_456707 Debaryomyces hansenii CBS767 CAG84663 hypothetical protein DEHA0A08844g/unnamed protein product
XP_717660 Candida albicans SC5314 XP_717754 EAK98698 EAK98798 putative SET3 histone deacetylase complex component Hos2p/putative SET3 histone deacetylase complex component Hos2p /potential SET3 histone deacetylase complex component Hos2p /potential S
10097
XP_756808 Ustilago maydis 521 EAK80829 hypothetical protein UM00661.1/hypothetical protein UM00661.1
XP_572385 Cryptococcus neoformans var. neoformans JEC21 EAL17695 Cryptococcus neoformans var. neoformans B-3501A AAW45078 Cryptococcus neoformans var. neoformans JEC21 histone deacetylation-related protein/hypothetical protein CNBL2100 /histone d
8431303130463218
XP_822424 Trypanosoma brucei TREU927 EAN77596 Trypanosoma brucei histone deacetylase 1/histone deacetylase 1
AAL86696 Trypanosoma brucei histone deacetylase-like protein HDO1
100
XP_815249 Trypanosoma cruzi strain CL Brener XP_816761 EAN93398 Trypanosoma cruzi EAN94910 histone deacetylase 1/histone deacetylase 1 /histone deacetylase 1, putative /histone deacetylase 1, putative
100
CAJ04180 Leishmania major histone deacetylase, putative
10042
3231_Cre
NP_495678 Caenorhabditis elegans Q09440 CAA86662 Histone DeAcetylase family member (hda-2)/HDA2_CAEEL Putative histone deacetylase 2/Hypothetical protein C08B11.2
CAE67777 Caenorhabditis briggsae Hypothetical protein CBG13352
1001952
XP_791175 Strongylocentrotus purpuratus PREDICTED: similar to histone deacetylase 8
CAF94481 Tetraodon nigroviridis unnamed protein product
NP_998596 Danio rerio AAH55541 histone deacetylase 8/Histone deacetylase 8
99
AAH73234 Xenopus laevis MGC80565 protein
XP_420178 Gallus gallus PREDICTED: similar to Histone deacetylase 8 (HD8)
XP_343805 Rattus norvegicus NP_081658 Mus musculus Q8VH37 BAB27550 AAH61257 BAE20928 PREDICTED: similar to Histone deacetylase 8 (HD8)/histone deacetylase 8 /HDAC8_MOUSE Histone deacetylase 8 (HD8) /unnamed protein product /Histone deacetylase 8 /u
XP_612570 Bos taurus PREDICTED: similar to Histone deacetylase 8 (HD8)
XP_538078 Canis familiaris XP_859102 PREDICTED: similar to Histone deacetylase 8 (HD8) isoform 1/PREDICTED: similar to Histone deacetylase 8 (HD8) isoform 3
66
XP_521133 Pan troglodytes NP_060956 Homo sapiens 1W22 1T64 Q9BY41 1T64 1W22 1T67 1VKG 1T69 1VKG CAB90213 AAF73076 AAF73428 AAH50433 PREDICTED: similar to Histone deacetylase 8 (HD8) (CDA07)/histone deacetylase 8 /B Chain B, Crystal Structure Of Inh
4996959999939
EAL18895 Cryptococcus neoformans var. neoformans B-3501A hypothetical protein CNBI1560
XP_568065 Cryptococcus neoformans var. neoformans JEC21 AAW46548 histone deacetylase 3/histone deacetylase 3, putative
100
XP_451946 Kluyveromyces lactis NRRL Y-1140 CAH02339 unnamed protein product/unnamed protein product
NP_983756 Eremothecium gossypii AAS51580 Ashbya gossypii ATCC 10895 ADL339Wp/ADL339Wp
NP_015393 Saccharomyces cerevisiae Q12214 CAA89185 CAA94976 Putative class I histone deacetylase (HDAC) with sequence similarity to Hda1p, Rpd3p, Hos2p, and Hos3p; deletion results in increased histone acetylation at rDNA repeats; interacts with the
XP_445477 Candida glabrata CBS 138 CAG58388 unnamed protein product/unnamed protein product
425298
XP_723599 Candida albicans SC5314 XP_711859 EAK92631 EAK92651 putative histone deacetylase Hos1p/putative histone deacetylase Hos1p /likely histone deacetylase Hos1p /likely histone deacetylase Hos1p
XP_458924 Debaryomyces hansenii CBS767 CAG87078 hypothetical protein DEHA0D11506g/unnamed protein product
10050
XP_810218 Trypanosoma cruzi strain CL Brener EAN88367 Trypanosoma cruzi histone deacetylase/histone deacetylase, putative
XP_815987 Trypanosoma cruzi strain CL Brener EAN94136 Trypanosoma cruzi histone deacetylase/histone deacetylase, putative
86
AAL86697 Trypanosoma brucei histone deacetylase-like protein HDO2
XP_829617 Trypanosoma brucei TREU927 EAN80505 Trypanosoma brucei histone deacetylase 2/histone deacetylase 2
100100
XP_760381 Ustilago maydis 521 EAK85283 hypothetical protein UM04234.1/hypothetical protein UM04234.1
3221
XP_504627 Yarrowia lipolytica CLIB122 CAG80231 hypothetical protein/unnamed protein product
281214
CAJ04998 Leishmania major histone deacetylase, putative
38
ZP_00601174 Rubrobacter xylanophilus DSM 9941 EAN35781 Histone deacetylase superfamily/Histone deacetylase superfamily
YP_446172 Salinibacter ruber DSM 13855 ABC45685 histone deacetylase/AcuC/AphA family protein /histone deacetylase/AcuC/AphA family protein
ZP_00523046 Solibacter usitatus Ellin6076 EAM57937 Histone deacetylase superfamily/Histone deacetylase superfamily
4150
ZP_00773864 Pseudoalteromonas atlantica T6c EAO69651 Histone deacetylase superfamily/Histone deacetylase superfamily
ZP_00992375 Vibrio splendidus 12B01 EAP92659 histone deacetylase/AcuC/AphA family protein /histone deacetylase/AcuC/AphA family protein
ZP_01066772 Vibrio sp. MED222 EAQ51892 histone deacetylase/AcuC/AphA family protein /histone deacetylase/AcuC/AphA family protein
100
NP_798524 Vibrio parahaemolyticus RIMD 2210633 BAC60408 histone deacetylase/AcuC/AphA family protein /histone deacetylase/AcuC/AphA family protein
ZP_00762046 Vibrio sp. Ex25 COG0123: Deacetylases, including yeast histone deacetylase and acetoin utilization protein
838294100262337
0.100