#NEXUS 
[MacClade 4.08 registered to M. Hasebe, NIBB]


BEGIN DATA;
	DIMENSIONS  NTAX=6 NCHAR=2309;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|15240619|ref|NP 196843.1| NEF1 (NO EXINE FORMATION 1) [Arabidopsis thaliana] >gi|7543906|emb|CAB87146.1| putative protein [A'    MMPPELQPRLFRPHITASTSEPTQSSSSYSPHMSPA---S--------------------------------------------------------------------------------------------------------------------------TRNFIDRATP--------T--SRSNN-------------------------------SRFSP----------------SSF-----------------AYNGRIAIALVPCAAFLLDLG--------------------------------GTPVVATLTIGLLISYIVDSLNV------------------------------------------------------------------------------------------------KFGGFLGIWMSLLAAQISFFFSSSLFSSFN-SVPLGLLAAFLCAQTTFLIGCWTSLQFKWLQLE------------------------------------------------------------------------------------------NPSIVVALERLLFACVPFTASSFF--------------------------AWATISA----VGMNN-----------------SSYYFLLFACVFYWIFAIPRVSSFKT-----------------------------------------------------------------KQEVKYHGG--EIPDDSFILGQLESCFLSLNLMF-------------MPLLFHVASHYSVIFSSAASVCDLLLLFFIPFLFQLYASTRGGLWWV-----------------------------TKDSHQLQSIRIVNGAIAMVIIVICLEIRVVFRSFGKY---IQVPPPLNYLLVTTTLLGGAAGAGASVLGMISSALSSA----------FFTALSV-IVSSAGAIVVGFP------------------VLFTPLPAVAGLYFARFFTKKSVPS-YF--AFVALGSLMVIWFVMHNYWDLNI-WLAGMFLKSFCKLIVANIII---AMVIPGLVLLPS--KFHFLTEAGMVTHALLLCYIEDRFFNYSSIYYYGMEDDV----------------MYPSYMVILTSLIGLAVVRRLFADHRIGQ---KAVWILTCLYSAK------------------LAMLFLSSKSIVWVSAALLLAVSPPLLLYK-------------------EKSKS----------ASKMKPWQGYAHAVVVAVSVWFCRETIFDALQWWHGRPPS-----DGLLLGSC-----------------------------------IVLIGLACIPIVAFHFSH-------VLSAKRSLVLVVATGCMFILMQPPMPMTWS--------------YHSDMIKAARQSADDISIYG-FMASKPTWPSWL--------------LIVSLLLILAA---------ATSLIPIKYVVELRAFYSIAMGLALGVYISAEFFLQA----------------------------------AVLHALIVVTLVCAS-------VFVIFTHFPSAS------STKLLPWVFALLVALFPVTYLLEGQVRIKNDLNENVTWGWDTREEDKKVTTMLAIEGARTSLLGLYAAIFMLIALLIKFELTSLLREKFSERSGQSKTQGGA--RGIFPTR--------------MRLMQQRRATSIQSFAVEKM-----SE----------------------------------------------------------EGAAWMPSVGNVATIMCFAICLILNIH------------LSG--GSSQAIFFLAPILLLLNQDSDLLSG-FGDKQRYFPVTVAISTYLALSSLYTV--------------WEEVWFG-GNTGWGVEIGGREWFFAVKNLALLILTA----PGHIIFNRYVWSYTTK------------------HTDASPMLTV---------------------------PLSFAAVIITDVFQVRVLGVLGIVYSAAQYVISRQQYMKGLR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YI   [1123]
lcl|Ppa_NEFAt5g13390_1_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?CYFEEGSRNRRTLNDVVVSCGFLCFFARCCSVVTEVSEKKYNGRVAVALVPSAIFLSGIG--------------------------------GKPVLATLTVGLMVCYILDSLHL------------------------------------------------------------------------------------------------KQGAMFGIWGTLGATGLAMILTGSTFTASSTSLAL---------HFMFLVGIWASVQFRWMQLE------------------------------------------------------------------------------------------NPAVVLSLERVLFACIPFTASTIQ--------------------------TWGVVMA----VGMTN-----------------APYYYMVFLFELYWLFALPMPSSFRL----------------------------------------------------------------KTERS--YGG--QFAEEALIQGSLEGSFHTMALMF-------------LPLLLHIGSHHARLFSSANAICDLLLLFFVPLLFQLYASTKGALNWL-----------------------------YKDQHLLQQVRLMNGAIALLVVILCLEVRVVFYSFGQY---IQIPSPWNYILVTIAALGGAAGLVAYLFGLIGDALTAP----------LLTSLMV-AASFSASIAIGLP------------------WMFLPAPVIAAYFIAQFFLNKSIVS-YT--ISVVAAVVPLTWFVVHNFWYLNI-WLGGAPLQTICKYIIGGAVV---AMGVPALSLLPN--KLRYAAEAGLVIHALIVCHLENRLYNFTSIYYFSMEDDV----------------VYPSYMVVFTTVLGLVLVHRLVADKRISS---VSCWLTTCFYLSK------------------LSMLFLSSPHVVWAAALLLLAVTPPLLLYKYFLKSFSPVGFRFCNLQLTGNKGG----------GFKMKPWQGMGHAAIIGISVWLCRFTLFEALQWWTGLTPS-----DGLILGSL-----------------------------------ILSAGVACAPIVTQHFSH-------IQSAKRALVLVISVGLLLTLMQPPVPEAWT--------------FWWDKAHMPERSADSLSIYG-AAAETPTWPTWL--------------LIVTITISLAA---------LTSAIPIQDVVELRLVYAVGMGVSTGVYLCAQYFLQA----------------------------------AILHVLLVAAMVCAS-------VFLVFTHLPSAT------SPRLLPWVFAILVGLCPVIYLAEGQLRFRTGDRA---------GSEDNYITLFALEGSRVSLLGLYAAIFMAIAFEIKLKLASIIADKLSDKV-----------VGGPGPK--------------YRLAQQRKPSSTSAFSVKKL-----AA----------------------------------------------------------EG-AWMATIGNVATLLCFSICLILNLH------------LTG--GSDRSIVVLAPILLLLNQDANLSTG-FGDRQRYFPLTAAASGYLIVSAGYRL--------------WIEVWHGYHSSDWGLQTGGPGLFYLVKNIILLMLTT----PNHFLFNRFMWNY-LK------------------QSDITLLLTT---------------------------PMNLPVAIITDIVSIRFLACIGMVYALVQYLISRNIRIAGMR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LI   [1093]
lcl|Smo_NEFAt5g13390_3_2_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGMALAPCAALMLGMG--------------------------------GKPVSATLTVGLMISYILDSLLL------------------------------------------------------------------------------------------------KRAAFFGVWGSLFAAGIAFFVTG--INLSSSSWALQGLGLLVLMELIFLIGVWASLQFRWLQLE------------------------------------------------------------------------------------------NPSVVIALERLLFATTPIVAGACQ--------------------------TWGIVAA----AGVEH-----------------AAFYLMAVQFVLYWLFSLPRTSSFKS----------------------------------------------------------------KPEKS--YGG--QIPEESLLIGPLEGCLHTLMLLF-------------LPLALHLGIHHRRLGSANA-IAELVLLFFVPLLFQLYASTKGALWWL-----------------------------AKDHRQLDHFRLVNGAIALVAVILSLEVRVVFFAFHQY---IQIPPPFNYLLVTLGLLGGAAAVGLFLLGRVGNA--------------PLTALLL-VAALSSSLVLGMPLKSSSSRENRFLGAQRFLLQFLPAPIISAAFLGHYLASRNLGS-YF--LFAVSASVSVTWFVFHNYWSLSI-WVGGSEIKSICKLLIASASI---ALGVPGLSTLPG--KARYLTDISLIGHAALVCNLENKLYNYPGIYY-GYTDDV----------------IYPSYAVVLSTTFGLLVTRRLAANNFVTS---LGAWVIYCLYASK------------------LGMLLLSSRTVLWSSVVLLLAVSPPVLLYK-------------------QKGKT----------GSRMKPWQGIAHAVVILAAVFWCQSTIIEALEWSFGRRPS-----DSVILGSM-----------------------------------ILLAGFASAPIVVQHFNHLQNHIFTLQAARRSLVLVLATGLLFMLLQPPLPWSFS--------------RRTFYVREIDYS-DDEAIYG-GIAAVPTWSTWL--------------LLATAITTLAA---------LSSALPVQHFVTLRFFYAIGVGANLGIYIAARYFPEL----------------------------------VIIGVLLLVAMVSAS-------LFLVFVLLPSAS------SPRFVPWLFGLLVSLLPVMYLLEGQLRGG--------WDQTGGDGDEKLVSILALRGARSSLLGLYAAIFMLIALVIKLQLASILREKG-------GVHTGGGGGAGFVPK--------------HRLLQQQRASHMSPLTVKKL-----SA----------------------------------------------------------EG-AWMPAVGNIATIGSFLLCIVLNRH------------LTG--GSDRAVLFLAPILLLLNQDTNLVTG-FGDRQRYLPLCAAVSIYLAISSAIKV--------------WGEVWHGHESSSWGMEMGGAGVIYAAKNTVLLAMAI----PSHAVFNLFLWNQ-AR------------------ASDMALLVTS---------------------------PLNAPAIVAADVGSIRGLALLGVIYALLQFMISRRIRIAGMK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YI   [1059]
'gi|77551231|gb|ABA94028.1| hypothetical protein LOC Os11g32470 [Oryza sativa (japonica cultivar-group)]'                            MDPSGSGPRHGRLLISPSLSSPTFSTS--SPSRSPAPHHD--------------------------------------------------------------------------------------------------------------------------RRNSTSSPQPLLPFPSASS--SRSGGGGGAAGGPRA-----------------AGALSSASQ----------------PAF-----------------AHNARVAAALAPAAAFLLDLG--------------------------------GLPVFAVLAVGLAAAYLLDALRQ------------------------------------------------------------------------------------------------RQGAFFTVWAALIAADVAFFFSASLSSAASASVPLTVLALLLCAETSFLIGVWASLQFRWIQLE------------------------------------------------------------------------------------------NPTIVAALERLLFACVPIAAPAIF--------------------------TWAVVSA----VGMAN-----------------ASYYLATFSMVFYWLFSIPRPSSFKN----------------------------------------------------------------RKQDAPWQ-------DTDGILGPLESCVHALYLLF-------------VPVLFHAASHHATLFASWANVCDLLLLFFIPFLFQLYASTRGALWWI-----------------------------TRDVRTMDQIRMANGLVALVVVVLCLEVRVVFHSFGRY---IHAPPPLNYLLVTVTMLGGALGMAAHAAGKVGDAVSSV----------AFTGLAV-LVSGAGAIVIGFP------------------VMFLPLPMISGYYAARFFTKKSLSS-YF--TFVAIASMMVLWFVVHNYWDLNI-WIAGMPLKSFTKYVVAAVIM---AMTVPGLALLPT--KLRFLVELGLTGHALLICYIENRLFNYATMYYFGFEDDV----------------MYPSYMVLFTTFLGLAL----------------------------------------------------------------------------------------------------------------------------------RFCY----------------------SLSLPPC-----------------------------------F-FTGLACIPIVALHFPH-------AQSAKRFLVLVVATGLLFVIMQPPIKLSWV--------------YRSEFIKAAHLSDDDTSIYG-FIASKPTWPSWL--------------LIATVVLTLAA---------VTSIIPVKYVVELRALYALGVGITLGIYISVQYFFQA----------------------------------VVLYPLLVATIVLAA-------VFIVFTHLPSES------STRVLPWVFSFLVVLFPITYLLEGHLRAKNFVDD---------EEAENFTNMLAIEGARMSLLGLYAAIFMIIALEIKFELALLLREKAADKG---VTHGPPGRSSAFPPK--------------ARLLQQRRAHAAPTFTIKRL-----AA----------------------------------------------------------EA-AWMPAIGNFSTVLCFIICLILNVT------------LTG--GSNRAIFFLAPILLLLNQDSDIIAG-FGDRQRYFPVTISISVYLVLTALYRL--------------WEETWP--GSGGWALDIGGPGWFFAVKNVALLMMTL----PNHILFNRFMWDY-VR------------------QTDAKLLLTL---------------------------PLNLPSIIMTDILTVRVLGLLGAIYSLSQYVISRRIRLAGMK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YI   [1032]
lcl|9150_Cre_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAASYYSMPAGNVAPVPAPAFSFNPGTGARSSTTRFTPADFKYNGRVAAALLPCLLTVAAVG--------------------------------GASVLACLTVGAMVVYLMDALQY------------------------------------------------------------------------------------------------REGAFTCAWLTLAATNVSFTVAL--LATSDAPVGLQVFMLFSTIALTVLTGMWASLQFKWLQMQ------------------------------------------------------------------------------------------YPAAAIYFERCVLTASLPLAAVMH--------------------------SLGLATF----VPYSD-----------------VPYYLAVLLTGLYYLLGRPLISSFYN----------------------------------------------------------------VKAGPAGLGGGPAVGPEAVVQTRGDGLLMAALVAL-------------LPAVTYAAVHWVVLSLHVHVYSMLLLSGGMPLLLTLLP---GGMWWLEPAPASPVNAGSGAFGAPTSISCLPYISITPSSSLAGFLRKTLLAVALLVALVGFEGRVVFHGFGQY---IQLPPPWNWVAVTFALFGCAVVGLMHVTGALGGSVDVT----------VAGSFLL-LCTTAGALAAGIP------------------FHWLPAPLLAACGLSLFYESRSLRE-YM--VFVVGAFLTGLWFMRQHFWFLDI-LVSGMRLHTLCKLAVAALVP---ALTVPGLVVARA--NA-HVIGGLLVAQAVLISLMEEKLY---AAGHEEGAPEP----------------MYPGWLVLATTLVGLAAARLLTGQGRLTP---LASWLLHSLYAAK------------------ASMLVIPEAQL-------------------------------------------------------------GLAHVLSVAVCVALARFAVFDVVQFLISARPT-----EGLLLGCL-----------------------------------ALTLAGCLVPLVTHCYAG-------QGVLARWAVGLALIGMLLVLMEPPLPLAGGARCPPMPLSLSLCPRLWDERHVPMHSAEDVEIWGRGLSRREHWPRWL--------------LIAAVVAGMATTGGGNPGAMVPQRSPSRAGVSGRLAFGAVAGLLVGGYTALELLPDQ----------------------------------IPLQLLVTAATVVAV-------IFVVLLSLPKAG------GPVALPALGILWGTCSGLALLLHAELPVSADRANSRLF-----PDSKVQVEREIYRATKASLLAVVASHALLMAFALKLKMTSALRRRAAAMHGRDNANGGGSANASFGISPSDLLCGVVPSSVFANYCAMLKLEGAGALALQRL-----AA----------------------------------------------------------EGLAWVPTLGNLLTLTAVALGVALNGF------------LNGGVGAPEGIFMLAPILLLLSQDPLILPG-LTERQRYCPPFLAVSAYLLGSGVLVA--------------VGDVL---TPSGAVAASGLPPALYLAKDLGLAALAV----PHHVVFLIYLWTLRPK------------------PWGLPLLLMA---------------------------PVCLLPLAMADVPALRFFGAAGALAAVMQYFSMKHVRHVGMKVPGERGLPAYAYIWHHHVSGVAQRIDGGSAGAWRLGLLNGTRISFGPGDVLAIEYTNLNSSRAALSRLVLSAERLTFSSARAREDWAAPAAIVLLASGLCVGPGTAALSTCLHNLYHGVPPYRACLGCFGLGMPLDAPSLLYFVASVSSHIVEVNYARVARLLYMPGTAAAFMPPSGLSYINQPVSKLTSGVALSRCGGSKGLLWAAFTVAMWLAYA   [1346]
lcl|Smo_NEFAt5g13390_1_1_unnamed_protein_product                                    ------------------------------?SRLEYFDAR--------------------------------------------------------------------------------------------------------------------------ARKEERSPRSAIPRFSSSSLLDRGAIDNACAGALRARIVIAIVIRAPRASRQNLGFMSSSSRTGMAASRRPPVDELRSTGF-----------------KHNARMGMALAPCAALMLGMG--------------------------------GKPVSATLTVGLMISYILDSLLL------------------------------------------------------------------------------------------------KRAAFFGVWGSLFAAGIAFFVTG--INLSSSSWALQGLGLLVLMELIFLIGVWASLQFRWLQLE------------------------------------------------------------------------------------------NPSVVIALERLLFATTPIVAGACQ--------------------------TWGIVAA----AGVEH-----------------AAFYLMAVQFVLYWLFSLPR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?   [254]
;
END;


BEGIN CODONS;
	CODESET  * UNTITLED = Universal: all ;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
	EXSET * UNTITLED  =  1-265 282-313 337-432 456-457 463 468-476 497-586 611-636 644-647 653-669 690-2309;
END;


BEGIN MacClade;
	Version 4.0  87;
	LastModified -1053607352;
	FileSettings editor  '0' '0' '1' '1';
	Singles 100;
	Editor 00011001111111100100010010 '1' '8' Geneva '12' '660' '1' all;
	EditorPosition  '129' '57' '760' '1345';
	TreeWindowPosition  '46' '6' '835' '1390';
	ListWindow Characters closed Geneva '9' '50' '10' '273' '366' 000;
	ListWindow Taxa closed Geneva '9' '50' '10' '161' '490' 100000000;
	ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ;
	ChartWindowPosition  '52' '30' '818' '1380';
	StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220';
	WindowOrder  Data;
	OtherSymbols &/ 00 ?-;
	Correlation  '0' '0' '1000' '0' '0' 10011010;
	Salmo 00000001;
	EditorFile  '4';
	ExportHTML _ MOSS  '100' 110000;
	PrettyPrint 10;
	EditorToolsPosition  '710' '92' '115' '165';
	TreeWindowProgram 10;
	TreeWindow 0000;
	Continuous  '0' '3' 1;
	Calculations 0000001;
	SummaryMode  '0' '0' 0;
	Charts  Geneva '9' (normal) 0010;
	NexusOptions  '0' '0' '50' 001011001;
	TipLabel  '1';
	TreeFont  Geneva '9' (normal);
	TreeShape  1.0 1.0 0100;
	TraceLabels 0101;
	ChartColors  '0' '0' '65535' '9' '0' 1;
	ChartBiggestSpot 1;
	ChartPercent 10;
	ChartBarWidth  '10' 1;
	ChartVerticalAxis 10101;
	ChartMinMax  '0';
	TraceAllChangesDisplay  '1' 1;
	BarsOnBranchesDisplay  '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101;
	ContinuousBranchLabels 0;
	AllStatesBranchLabels 1;
	IndexNotation  '2' 1;
	PrintTree  10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '15' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000;
	MatchChar 00 .;
	EntryInterpretation 01;
	ColorOptions 00;
	TreeTools  '0' '5' '4' '0' '10' '4' '0' 00100111111101110;
	EditorTools  '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011;
	PairAlign  '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010;
	BothTools  '1';
END;