#NEXUS 
[MacClade 4.08 registered to M. Hasebe, NIBB]


BEGIN DATA;
	DIMENSIONS  NTAX=100 NCHAR=1577;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|15236714|ref|NP 191923.1| IND; DNA binding / transcription factor [Arabidopsis thaliana] >gi|7267099|emb|CAB80770.1| hypothe'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MENGMYKKKGVCDSCVSSKSRSNHSPKRSMMEPQPHHLLMDWNKANDLLTQEHAAFLNDPHHLMLD-------------------------------------------------------------------------------------------------------------------------------PPPETLIHLDEDEEYDEDMDAMKEMQY----MIAVMQP--VD-----IDPATV----------PKPNR----------------RNVRISDDPQTVVAR----------------------RRRERISEKIRILK--RIVPGGAKMDTASMLDEAIRYTKFLKRQVR---------------------ILQPHSQI---------------------------------------------------------------------------------GAPMANP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SYLCYYHNSQP   [198]
gi|47605761|sp|O81313|IND_ARATH_INDEHISCENT_protein                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMEPQPHHLLMDWNKANDLLTQEHAAFLNDPHHLMLD-------------------------------------------------------------------------------------------------------------------------------PPPETLIHLDEDEEYDEDMDAMKEMQY----MIAVMQP--VD-----IDPATV----------PKPNR----------------RNVRISDDPQTVVAR----------------------RRRERISEKIRILK--RIVPGGAKMDTASMLDEAIRYTKFLKRQVR---------------------ILQPHSQI---------------------------------------------------------------------------------GAPMANP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SYLCYYHNSQP   [169]
'gi|15242494|ref|NP 196537.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|9759006|dbj|BAB09533.1| unnamed prot'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNNYNMNPSLFQNYTWNNIINSSNNNNKNDDHHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQE----------------------------------------------------------------------------------------------------DDEDEEEPLEELGAMKEMMY----KIAAMQS--VD-----IDPATV----------KKPKR----------------RNVRISDDPQSVAAR----------------------HRRERISERIRILQ--RLVPGGTKMDTASMLDEAIRYVKFLKRQIR---------------------LLNNNTGY---------------------------------------------------------------------------------TPPPPQD--QASQAV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSWVSPPPPPSFGRGGRGVGELI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [224]
'gi|15229725|ref|NP 190602.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|37202028|gb|AAQ89629.1| At3g50330 [A'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNSDILMNMMMQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQ-----------PGLNFRYAPSPSSSLPEKRGGCSDNANMAA--------------------------------------------------------------------------------------------------MREMIF----RIAVMQP--IH-----IDPESV----------KPPKR----------------KNVRISKDPQSVAAR----------------------HRRERISERIRILQ--RLVPGGTKMDTASMLDEAIHYVKFLKKQVQ---------------------SLEEHAVV---------------------------------------------------------------------------------NG-------GGMTAV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGALAGTVGGGYGGKGC--GIMRSDHHQMLGNAQILR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [231]
'gi|51970182|dbj|BAD43783.1| putative bHLH transcription factor (bHLH037) [Arabidopsis thaliana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNSDILMNMMMQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQ-----------PGLNFRYAPSPSSPLPEKRGGCSDNANMAA--------------------------------------------------------------------------------------------------MREMIF----RIAVMQP--IH-----IDPESV----------KPPKR----------------KNVRISKDPQSVAAR----------------------HRRERISERIRILQ--RLVPGGTKMDTASMLDEAIHYVKFLKKQVQ---------------------SLEEHAVV---------------------------------------------------------------------------------NG-------GGMTAV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGALAGTVGGGYGGKGC--GIMRSDHHQMLGNAQILR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [231]
'gi|15240189|ref|NP 201507.1| transcription factor [Arabidopsis thaliana] >gi|20127097|gb|AAM10961.1| putative bHLH transcriptio'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDSDIMNMMMHQMEKLPEF------CNPNSSFFSPDHNNTYPFLFNSTHYQSDHSMTNEPGFRYGSGLLTNPSSISPNTAYSSVFLDKRNNSNNNNNGTNMAA--------------------------------------------------------------------------------------------------MREMIF----RIAVMQP--IH-----IDPEAV----------KPPKR----------------RNVRISKDPQSVAAR----------------------HRRERISERIRILQ--RLVPGGTKMDTASMLDEAIHYVKFLKKQVQ---------------------SLEEQAVV---------------------------------------------------------------------------------TGGGGGG--GGRVLI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGMTAASGGGGGGGVVMKGCGTVGTHQMVGNAQILR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [241]
'gi|50946733|ref|XP 482894.1| bHLH protein family-like [Oryza sativa (japonica cultivar-group)] >gi|42408644|dbj|BAD09865.1| bHL'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEFDMLNSNPEAQLELMNTMLQLEQLSAFPDHHGMV---------------------VPCSPTSPCMGAQGGHHHFSSVNHQ---------------------------------------------------PAHGVVSSGGANTGDGYRDQYYTQLL-----------PAAAYSNAAGGGRGSEYHTTTTTRPASGGGGDGGVGPAA--------------------------------------------------------------------------------------------------MREMIF----HIAALQP--VN-----IDPETV----------RPPKR----------------RNVRISTDPQSVAAR----------------------MRRERISERIRILQ--RLVPGGTKMDTASMLDEAIHYVKFLKTQVQ---------------------SLERAAAA---------------------------------------------------------------------------------NGHRPPP--PTATSA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATVAYPGLNGQW-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [246]
'gi|51536285|dbj|BAD38453.1| basic helix-loop-helix (bHLH)-like protein [Oryza sativa (japonica cultivar-group)] >gi|51535231|db'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDFDLFNSYPESQLDLMSTMLQLEQLTALSDQSLFM-----------------------AAPTSPPVSPMGTPSPQF--------------------------------------------------------SPPPQMSVTTTTAGGGYQDQYNSMPA------------------TYGAGAGVHQLDFAMSSPGSDSGAPQGSSSSSSSEA----------------------------------------------------------------------------------------------MREMIF----HIAALQP--VE-----IDPEAV----------RPPKR----------------RNVRISKDPQSVAAR----------------------LRRERISERIRILQ--RLVPGGTKMDTASMLDEAIHYVKFLKSQVQ---------------------SLERAAAA---------------------------------------------------------------------------------TGAAAHR--AAAFGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-YPAALPMQHHAPW--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [236]
'gi|52076301|dbj|BAD45086.1| bHLH transcription-like [Oryza sativa (japonica cultivar-group)] >gi|52076245|dbj|BAD45013.1| bHLH'     --------------------------------------------------------------------------------------MFRSAVAVSQ------LATTTTVWMDRGFNEMILSESVWNGGGGGGDGDGGAVVLPPEVGGV-NAVDGSGMTMLERLVLDEALAAAILELQGIQAPGCGGGGGKVAVVPPPTAGDGGVEAAVAFAAMATGTPAYADVDADVLQRQRQHHHRHQGAMGMAAEYDVAPATPAVTLSAVPPPPPPPAFATAAASVDGGGAMDATVFSGIG-----------N---DDVVDAVSATVAMTTATATTSQCERVRGGGGGGGCGRKQRRPGRKRKAAEPTAAAAAADMSSQDNPLCSLLASNTAGADGGIQIAFSTSAPASKRAKPSLSSSSSSISFDG------------------------------------------------------------------------RGPGGNCGGGGGDDPLYEPDTEALAQ-VKEMIY----RAAAMRP-VTL-----GAEDAG----------ERPRR----------------RNVRISSDPQTVAAR----------------------QRRERISERLRVLQ--KLVPGGAKMDTASMLDEAANYLRFLKSQIR---------------------ELQTLDRR---------------------------------------------------------------------------------NYPNAAM--SINTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTMATSSSPTYNNSNAAMPAFAFPETLGCGGGGVEQLI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [484]
'gi|34914234|ref|NP 918464.1| P0697C12.24 [Oryza sativa (japonica cultivar-group)]'                                    --------------------------------------------------------------------------------------MFRSAVAVSQSAASWRLATTTTVWMDRGFNEMILSESVWNGGGGGGDGDGGAVVLPPEVGGV-NAVDGSGMTMLERLVLDEALAAAILELQGIQAPGCGGGGGKVAVVPPPTAGDGGVEAAVAFAAMATGTPAYADVDADVLQRQRQHHHRHQGAMGMAAEYDVAPATPAVTLSAVPPPPPPPAFATAAASVDGGGAMDATVFSGIG-----------N---DDVVDAVSATVAMTTATATTSQCERVRGGGGGGGCGRKQRRPGRKRKAAEPTAAAAAADMSSQDNPLCSLLASNTAGADGGIQIAFSTSAPASKRAKPSLSSSSSSISFDG------------------------------------------------------------------------RGPGGNCGGGGGDDPLYEPDTEALAQ-VKEMIY----RAAAMRP-VTL-----GAEDAG----------ERPRR----------------RNVRISSDPQTVAAR----------------------QRRERISERLRVLQ--KLVPGGAKMDTASMLDEAANYLRFLKSQIR---------------------ELQTLDRR---------------------------------------------------------------------------------NYPNAAM--SINTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTMATSSSPTYNNSNAAMPAFAFPETLGCGGGGVEQLI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [490]
'gi|9294680|dbj|BAB03046.1| unnamed protein product [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSVYKYALFLSMPLTFVFVLGVFRIVFDPMEGLESVYAQAMYGMTRESKIMEHQGSDLIWGGNELMARELCSSSSYHHQLINPNLSSCFMSDLGVLGEIQQQQHVGNR-----------A---SSIDPSSLDCLLSATSNSNNTSTED-----------DEGISVLFSDCQTLWSFGGVSSAESE--------------------NREITTETTTTIKPKPLKRNRGGDGGTTETTTTTTKPKSLKRNRGDETGSHFSLVHPQDDSEKGGFKLIYDENQSKSKKPRTEKERGGSSNISFQHST--------------CLSDNVEPDAEAIAQ-MKEMIY----RAAAFRP--VN-----FGLEIV----------EKPKR----------------KNVKISTDPQTVAAR----------------------QRRERISEKIRVLQ--TLVPGGTKMDTASMLDEAANYLKFLRAQVK---------------------ALENLRPKLDQT-----------------------------------------------------------------------------NLSFSSA--PTSFPL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F-HPSFLPLQNPNQIHHPEC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [402]
'gi|15232534|ref|NP 188770.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|56382001|gb|AAV85719.1| At3g21330 [A'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGLESVYAQAMYGMTRESKIMEHQGSDLIWGGNELMARELCSSSSYHHQLINPNLSSCFMSDLGVLGEIQQQQHVGNR-----------A---SSIDPSSLDCLLSATSNSNNTSTED-----------DEGISVLFSDCQTLWSFGGVSSAESE--------------------NREITTETTTTIKPKPLKRNRGGDGGTTETTTTTTKPKSLKRNRGDETGSHFSLVHPQDDSEKGGFKLIYDENQSKSKKPRTEKERGGSSNISFQHST--------------CLSDNVEPDAEAIAQ-MKEMIY----RAAAFRP--VN-----FGLEIV----------EKPKR----------------KNVKISTDPQTVAAR----------------------QRRERISEKIRVLQ--TLVPGGTKMDTASMLDEAANYLKFLRAQVK---------------------ALENLRPKLDQT-----------------------------------------------------------------------------NLSFSSA--PTSFPL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F-HPSFLPLQNPNQIHHPEC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [373]
'gi|28393737|gb|AAO42279.1| unknown protein [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGLESVYAQAMYGMTRESKIMEHQGSDLIWGGNELMARELCSSSSYHHQLINPNLSSCFMSDLGVLGEIQQQQHVGNR-----------A---SSIDPSSLDCLLSATSNSNNTSTED-----------DEGISVLFSDCQTLWSFGGVSSAESE--------------------NREITTETTTTIKPKPLKRNRGGDGGTTETTTTTTKPKSLKRNRGDETGSHFSLVHPQDDSEKGGFKLIYDENQSKSKKPRTEKERGGSSNISFQHST--------------CLSDNVEPDAEAIAQ-MKEMIY----RAAAFRP--VN-----FGLEIV----------EKPKR----------------KNVKISTDPQTVAAR----------------------QRRERISEKIRVLQ--TLVPGGTKMDTASMLDEAANYFKFLRAQVK---------------------ALENLRPKLDQT-----------------------------------------------------------------------------NLSFSSA--PTSFPL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F-HPSFLPLQNPNQIHHPEC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [373]
lcl|Smo_IND_1_1_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDFP-----------H---CSSLFTSNPSPSVDSSSYNQASRSLHSPDRSKPITLQTPPLDHRQEELFVFGASSSSGAVA-----------------------------------------------------------------------------------------------------------------------------------------------------MKNLFYAACKRSAMAEE--EQ-----REEESW----------SKPKR----------------RNTRISKDPQSVAAR----------------------HRRERISQKIRTLQ--RLVPGGTKMDTASMLDEAIHYVKFLKTQVH---------------------SLELLGFH---------------------------------------------------------------------------------SPLAVAP--PANPSS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H-FPLPIDRSQMASCSSS-RFFPSIDHSSDIESQHLAYRHQSP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [217]
lcl|Smo_IND_2_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFEELHYLIHGGDRSVFDQLDIFGQHNFPPLLDPAAALGCGDAHHGQLPDLDELIQASGVDAVGSSSSDGEGVDHQHQHQHQQ-----------H---EAVHASASSATSSASSDADVCPLGT-----------SSSGATSVMQQAQAIQPGEPWAHRFP--------------------DVGFTSGMAAVPESKQGMFSASQGGSDMEQGSSQAPNEQHQGGGGGGGGGAGMEN-------------------------------------------------------------------------MRETLY----RMAVWRP-ITA-----TDCLGG----------SKPKR----------------RNVRISSDPQTVAAR----------------------HRRERISTKIRILQ--RLVPGGTKMDTASMLDEAIHYVKYLKSQVQ---------------------AMEMLEQS------------------------------------------------------------------------------------SGDQ--PLLRNS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-SAASLASTATAASQTAAPGICHLYNAHSGS?--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [328]
lcl|Smo_IND_8_2_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDRVEPPFLCAGEEHATDSSSQSSPAGAGISIDFGGGMESTEELHYLIHGGDRSVFDQLDIFGQHNFPPLLDPAAALGCGDAHHGQLPDLDELIQASGVDAVGSSSSDGEGVDHQHQHQHQQ-----------H---EAVHASASSATSSASSDAGLCPLGT-----------SSSGATSVMQQAQAIQPGEPWAHRFP--------------------DVGFTSGMAADPESKQGMFSASQGGSDMEHASSQAPNEQHQ-GGGGAGAGAGMAN-------------------------------------------------------------------------MRETLY----RMAVWRP-ITA-----TDCLGG----------SKPKR----------------RNVRISSDPQTVAAR----------------------HRRERISTKIRILQ--RLVPGGTKMDTASMLDEAIHYVKYLKSQVQ---------------------AMEMLEQS------------------------------------------------------------------------------------SGDQ--PLLRNS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-SAASLASTATAASQTAAPGICHLYNAHSGSGLLNGSIFWPQQFSMDSGGLLVQQVNISGY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [393]
'gi|34910410|ref|NP 916552.1| P0692C11.28 [Oryza sativa (japonica cultivar-group)] >gi|19571105|dbj|BAB86530.1| bHLH transcripti'    --------------------------------------------------------------------------------------------------------------------------------------------METFGWAG-GGQLMHHDDIYLPRSVGCGRPFELDDAFLGACFGAQLQCDGGVGGGDGGGCLQGTSGFGAVAGDPLGLLCSGDVFASVAEGAGGAHDDGLLDAALAFSRNQLGGAACDGSDGGAVSNGAMLSSYSGTTGGNISSGESNNYSGGG-----------G---GYDAEVVSPTSTMSAATQSLHPKRKLYDDHHHPAGIAAAAAAPPLAPCPRPTTGAV--------------------------AAKRRASTSATSIT---------------------------------------------------------------------------------------FGHQPHHHHAGATTAGYEPDMEAMAQ-VKEMIY----RAAAMRP-VHL-----GTEAAA----------DKPRR----------------KNVRISSDPQTVAAR----------------------LRRERVSDRLRVLQ--KLVPGGNKMDTASMLDEAASYLKFLKSQVQ---------------------KLETLGTT------------------------------------------------------------------------------------------TTTSKL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P-QQYYSGNINSSNNHHGFLGFAANNNTISAGYANSNAGNATKLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [393]
lcl|Smo_IND_9_2_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYDRQAWKDLAEYATSCVIAGDERVEDNSKIISSSTRTFTPSMDFA-----------H---CSSLFTSNPSPSVDSSSYNQASRSLHSPDRSKPITLQAPPLDHRQEELFVFGASSSSGGVA-----------------------------------------------------------------------------------------------------------------------------------------------------MKNLFY-TCKRSAMAEE--EQ-----REEESW----------SKPKR----------------RNTRISKDPQSVAAR----------------------HRRERISQKIRTLQ--RLVPGGTKMDTVSMLDEAIHYVKFLKTQVH---------------------SLELLGFH---------------------------------------------------------------------------------SPLAVAP--PANPSS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H-FPLPIDRSQMASCSSSHRFFPSIDHSSDIESQHFAYRHQSP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [259]
lcl|Ppa_IND_8_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTGLKRRSFEG-----------D---DGDWMVDQ---MHLSQKVEKQHHQQ-----------QPEKALAFQESFGGYNVEVASTVGLT--------------------ATYSDSLTIPSLMQPS--PQPFLRSSGNC-------------------------------------------------------------------------------------GAASPVDLDEFAS-MRAILF----RHASQP--VPS-----LEEIAS----------SRPKR----------------RNVRISKDPQSVAAR----------------------HRRERISDRIRVLQ--RLVPGGTKMDTASMLDEAIHYVKFLKLQLQ---------------------TLEQIGNNGCDPRSF--------------------------------------------------------------------------LEQGGAT--EELANL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H-ELCEELRNMTHASLSKT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [231]
'gi|51090503|dbj|BAD35705.1| bHLH protein-like [Oryza sativa (japonica cultivar-group)]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEFDMAMDMMSQEQLMHIISQ---------------LDSALASSPSPSTSPSASPPRQSPAAHVPVPPGLLNTTMVSTSRAQAAPSAPLHPVAATAAVQSSSRGIMYT----------------------------------------------------------------------------------------------------------------------------------------------------TTRQGVIDAAE-----EEEAAA----------PRPRR----------------RNARVSSEPQSVAAR----------------------LRRERVSQRMRALQ--RLVPGGARLDTASMLEEAIRYVKFLKGHVQ---------------------SLERAAAA---------------------------------------------------------------------------------LHMHGGH--AAAAGF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGDAGDAVYSCPSYYA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [211]
lcl|Ppa_IND_12_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVDSSSNEVDVSDHANSLPSTGMLVSNLLDRTGSL-DESGLYMEADSPRGPLSPAALQLGKSPKG-----------VAIKRSFEDA-----------S---EASWMPAAEATHIRARKSAKQQ--------------LPKNVALSQEDLQASAAAVPYPPF----------------------VAMASSGEMAPLAIRSGVAPAFVPASAAN---------------------------------------------------------------------------------------------------VPPLLF----PTPLTLPNVPS-----MEEIAQ----------SRPKR----------------RNVRISKDPQSVAAR----------------------HRRERISDRVRVLQ--HFVPGGTKMDTASMLDEAIHYVKFLQQQLQ---------------------TLEQIGNM---------------------------------------------------------------------------SDPRFMAQPGGPMMMPQMGAM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N-AIRLLDVTTKCPTHSLACSRRMQQLGYGITDQWILSNQLEAVLREKCGVVRLCSEATIHV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [327]
'gi|50932565|ref|XP 475810.1| unknown protein [Oryza sativa (japonica cultivar-group)]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------MDAFGWSAPAAPCQPSCGPGGDDDDDVLLAAVLGASFELHSLVDGGGNGAAGAVRSDDAYGLDVDLPSHQMSLLRCQDGLSALHGDASPTAAAAAFLDSVDVLPVPAIAGATHDDGGLLDRFAFPNVA-----------E---TTTVQAAASNTAFSGYSSNTTGGGN-----------ISSGESNTYTEVASTPCAVSTTTTTTALPPSKRKLPEKYPVVGTSPTTKTTTTSETAAERRSTKRGAGGSSSITFGGGCHGAGAAAALL---------------------------------------------------------------------GYGRGYEPDTEAIAQ-VKEMVY----RAAPMRPVTLG-----GPASASDPSSRPPPPPQRPRR----------------KNVRISSDPQTVAAR----------------------LRRERVSERLRVLQ--RLVPGGSKMDTATMLDEAASYLKFLKSQLE---------------------ALETLGNG------------------------------------------------------------------------------------NGNG--NLLHHG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-YTGSRNATATAATGSSNSTVLAFGRDGLAGFVKSNRNLQL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [414]
'gi|55908877|gb|AAV67820.1| unknown protein [Oryza sativa (japonica cultivar-group)]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------MYMDAFGWSAPAAPCQPSCGPGGDDDDDVLLAAVLGASFELHSLVDGGGNGAAGAVRSDDAYGLDVDLPSHQMSLLRCQDGLSALHGDASPTAAAAAFLDSVDVLPVPAIAGATHDDGGLLDRFAFPNVA-----------E---TTTVQAAASNTAFSGYSSNTTGGGN-----------ISSGESNTYTEVASTPCAVSTTTTTTALPPSKRKLPEKYPVVGTSPTTKTTTTSETAAERRSTKRGAGGSSSITFGGGCHGAGAAAALL---------------------------------------------------------------------GYGRGYEPDTEAIAQ-VKEMVY----RAAPMRPVTLG-----GPASASDPSSRPPPPPQRPRR----------------KNVRISSDPQTVAAR----------------------LRRERVSERLRVLQ--RLVPGGSKMDTATMLDEAASYLKFLKSQLE---------------------ALETLGNG------------------------------------------------------------------------------------NGNG--NLLHHG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-YTGSRNATATAATGSSNSTVLAFGRDGLAGFVKSNRNLQL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [416]
lcl|Ppa_IND_2_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------M-EAFAQANAGCMLNQPSQGGGDSLDTLLKSSNSSSMVDSSTSEMTSPDNYCVGAPENNLHMNCISSLGGGPVSPVLTNMLDRTASTGACLVAAHQQSKSEFFRMESPGGPLSPGAPPCGESEDSLHGGEASMTGL----KRRFDG-----------G---DKNWMVDQ---MHGSRKQQKP-QLQ-----------QSEKALGFQDSVGGF-VDAASTAGMP--------------------GKYSDLATVPSVMQPP--PLSFLPSIAAG-------------------------------------------------------------------------------------GASSGVDIDKFAS-VRAILF----RHASQP--IPT-----LEEIAS----------SRPKR----------------RNVRISKDPQSVAAR----------------------HRRERISDRIRVLQ--RLVPGGTKMDTASMLDEAIHYVKFLKLQLQ---------------------VCNTCNLVPVDISAISSQHVVHIMVITRFGKVPECVLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [351]
lcl|Ppa_IND_4_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------?LNARTKWSENHDVHAESSVSVPL-SFHSDETLITGAGSLFEDSRKEDVTLRPFLKLETMGLCVENQNARLLSARSAGMVDSSCNEEDISEQASSVALSVIPSGTVSAADFLDQAPRVDEVANLYMEADSPHGLLFSTGLQLETTSRT-----------ASHKRVLDDS-----------S---EASCMQVAD-----VQSQSRKSPKV-----------QHGPVLLQDDGLQVPVDYVPFVAMAK--------------------PSQAHFAISTSATFLP----------------------------------------------------------------------------------------------------------TSPGNVVPAVLF----PTPLTLPNVPS-----MEEIAQ----------TRPKR----------------RNVRISSDPQSVAAR----------------------HRRERISDRVRVLQ--HFVPGGTKMDTASMLDEAIHYVKFLQQQLQ---------------------SFTSVSLI------------------------------LALLYWGSRACNCEDSDVFKLELNLITWNVWYATGNGADFPGRFRDDARGRASMSTHK--MPIADI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-QSGFCSTDSSHSCQSSHRMRLQTEQAFIFHG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [417]
lcl|Ppa_IND_1_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADRTPSL-DEPVLCVDAKSPREPLSPGALQLRKSPSR-----------ASTKRSFVDA-----------S---EASWMPVADAQQSRTQHPVKQK--------------QPKNGMLSQEEIQSPPAAIAYGPPF---------------------VGMSTSGEMATLAIPN--PTAFLPGSAAN---------------------------------------------------------------------------------------------------VAPLLF----STPLTLPNVPS-----MEEIVQ----------LRPKR----------------RNVRISKDPQSVAAR----------------------HRRERISDRVRVLQ--HFVPGGTKMDTASMLDEAIHYVKFLQQQLQ---------------------VRSQSESKVLG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [220]
lcl|Ppa_IND_3_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAHRYYKSFYPMESPGGPLSSGLLPCGKSENSLNKGEARVIAIADL-QRLLEG-----------D---DEDWMVQEEIKMHESSKLVKP--QQ-----------QSEKHAVFQDSFGGC-IEASSSAGFT--------------------VTCFDRVTIPSATHPP--TPPFRQRKGSV-------------------------------------------------------------------------------------GGSPAVDLDNFAR-MQAILF----RQASQL--IPT-----LEDIAS----------SRPKR----------------RNVRISIDTQSVAAR----------------------HRRERISDRIRVLQ--RLVPGGTKMDTASMLDEAIHYIKFLKQQLQ---------------------VYTDARIISLSVIGKSCLRHWSS------------------------------------------------------------------LGSMGVT--QGMLRC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E-AVKLYSSAAQCVRRST-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [280]
'gi|15240948|ref|NP 195751.1| transcription factor [Arabidopsis thaliana] >gi|7320709|emb|CAB81914.1| putative protein [Arabidop'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDDFNLRSENPNSSST------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSSSSSSFHRH-----KSETGN----------TKRSR----------------STSTLSTDPQSVAAR----------------------DRRHRISDRFKILQ--SMVPGGAKMDTVSMLDEAISYVKFLKAQIW---------------------YHQNMLLFINDH-----------------------------------------------------------------------------ETTSSCTYSPGAGEFGPKLFGYDDDYAPIMDTYSQGVPLTVADSKYTPWFGSVDDEQEHVTYFKYRRATRHALRGHCNCIIGETEEFADQREKMEVQIEESGKNQTSPESIEADKAKQIVVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLKMATDSLREGKSVFIDRCNLDREQRSEFIKLGGPEFEVHAVVLELPAQVCISRSVKRTGHEGNLQGGRAAAVVNKMLQSKELPKVNEGFSRIMFCYSDADVDNAVNMYNKLGPMDTLPSGCFGEKKLDTKSQPGIMKFFKKVSALPASSSNEATNTTRKADEMTANVRVSPVKLGSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLGTARLVLVDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNWRLKPGGGGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHVLGPNMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPKRSSQTAVSDSGEDIKEDSERNKKYKGSQDKAVTNNLESESLEDTRGSGKKMSKGWNTWALALHSIAMHPERHENVVLEYLDNIVVINDQYPKARKHVLVLARQESLDGLEDVRKENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQLHLHVISQDFNSDSLKNKKHWNSFTTSFFRDSVDVLEEVNSQGKANVASEDLLKGELRCNRCRSAHPNIPKLKSHVRSCHSQFPDHLLQNNRLVARAET   [912]
lcl|Smo_IND_3_2_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NEPLRFAGFLDDVTTSSSGSVVEDCCDFDQIMAPVAPQPQIFHSLGGSSACPSSWFGNDQNPRSSGNEDLEAALGNGTSYYEPPKKLLKTSRIEAREWDDHDQGIKRKNKEEEEEQEEELDQ---------------------------------------------------------------ESDLHPAEKKR-----SCQRSS----------RQQQQ----------------REPWSSIDPQSVAAR----------------------RRRKRISERVRWLE--KLIPGGSKMDTASMLEEAIRYVKFLQLQVE---------------------LLEMIGGG---------------------------------------------------------------------------------GEDHHRP--PNSPLV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSEELQEVLFRKRCCVAAIKQST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [247]
lcl|Smo_IND_4_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNLFDENAAAMMDNLLISSINSPASDAWTVAALDSASPTSGFCPDSISYSLFHPSGFLAAS------------------------------------------------------------------------------------------------------------------------------ANSSLDHQKAG-----SSGKPG----------SKRSG----------------SSSKFSTDPQSVAAR----------------------MRRKRISERFKTLQ--RLVPGGSKMDTASMLDEAISYVKFLKHQIW---------------------LHEIAIAS-------------------------------------------------------------------------------------STT--INSNSC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-SADSGFLSSLSSSSSKFDHERLAATSDPPAQLWNGGFLAMAQRIKLGSQGLEVSKQGLGCMGMSAFYGPPKPEGEMIELIRTAIESGITFLDTADMYGPYTNEILV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKAIKGIRDKVELATKFAFFVDEKGNRGIRGDPAHVRAACEGSLKRLDVDCIDLYYQH?---------------------------------------------------------   [325]
lcl|Smo_IND_5_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDNLVMSSIDSPPNDAWTVTALDSASPTSGFCPDSISYSLFHPSGFLAAS------------------------------------------------------------------------------------------------------------------------------ANSSPDHQKAG-----SSGKPG----------SKRSG----------------SSSKFSTDPQSVAAR----------------------MRRKRISERFKTLQ--RLVPGGSKMDTASMLDEAISYVKFLKHQIW---------------------LHEIAIAS-------------------------------------------------------------------------------------STT--INSNSC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-SVDSGFLSSLSSSSSNFDHERLAATSDAPAQLWNGRFLAMAQRIKLGSQGLEVSKQGLGCMGMSAFYGPPKPEGEMIELIRTAIESGITFLDTADMYGPYTNEILV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GK------------------------------------------------------------------------------------------------------------------   [258]
lcl|Ppa_IND_13_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------MLQVDSRGSPMTVGHVEMMAAL-NADPYKSLGNYELTQLVQLYSTYYQDPYPYSNLSFSDSVTFQPDVSLPTSSDCLQVVSSSGSDSLSTTETWRSETSGGCAPSSYENVLTNLNESSSVTLVRDSHDSNFQPQRPHLDMLKHDQAVSLPPVHEMWIQNQIQAGVGR-----------N---TLHTVLALTQDMPSYDVLPVKSSSDPPTFKRPRTWGEALQQGSAHCDSLRHSLASKTSPTLD--------------------STQLSSLSRSIPSRQFSFQGKLSPSHLSGAGG------------------------------------------------------------------------------------------------------------------------------------------STYSR---LPGLPEEGRLCNGKPAATSVEPQSVAAR----------------------HRRKKISERIRVLE--KLIPGGNKMDTATMLDEAIEYVKFLQLQVQ---------------------ILESDTLD---------------------------------------------------------------------------------NAPLT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASNGQNLPLQGSRAKQGLKRKGDTSLGGDSSPAL---------SVRAATSPLILSEVLQQQLFKQKLCLVSIRQCPPRAASTQAAAAPSVLRKN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [436]
'gi|56785174|dbj|BAD81850.1| transcription factor [Oryza sativa (japonica cultivar-group)] >gi|33342172|dbj|BAC80247.1| transcri'    ---------MHDPRGFPIHPQPYHL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HPTAGGLGEGR-----MRG-------------GGRRR----------------PGAKLSTDPQSVAAR----------------------ERRHRISDRFRVLR--SLVPGGSKMDTVSMLEQAIHYVKFLKAQVT---------------------LHQAALVQ---------------------------------------------------------------------------------HEEGCQH--ADVAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F-SAA---DADLALELNHRHGGAGDDDAGMTTLEMAPMQEAVGYGDGPAHQMMQQALDPAGQLMMGGAHQLPPLP-CCVFVQETDPSCYSVCNVHGEESGAQGSY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [215]
'gi|34907970|ref|NP 915332.1| P0446G04.16 [Oryza sativa (japonica cultivar-group)]'                                    ---------MHDPRGFPIHPQPYHL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HPTAGGLGEGR-----MRG-------------GGRRR----------------PGAKLSTDPQSVAAR----------------------ERRHRISDRFRVLR--SLVPGGSKMDTVSMLEQAIHYVKFLKAQVT---------------------LHQAALVQ---------------------------------------------------------------------------------HEEGCQH--ADVAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F-SAA---DADLALELNHRHGGAGDDDAGMTTLEMAPMQEAVGYGDGPAHQMMQQALDPAGQLMMGGAHQLPPLP-CCVFVQETDPSCYSVCNVHGEESD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [210]
lcl|Smo_IND_7_1_unnamed_protein_product                                    ?PSLVPIFVKSDPILHPSSWPPLEIVEESQAGDVFYANPLVDCHGVGFDFHPADRRQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLSWAMQSPLADEILLRCEALPDLEADIPEARFLKNEPIRFAGFLDDVTTSSSGSVVEDCCDFDQIMAPVAPQPQIFHSLGGSSACPSSWFGSDQNPRSSGNEDLEAALGNGTSYDEPPKKLLKTSRIEAREWDDHDQGFKRKNKEEEEEQEEELDQ---------------------------------------------------------------ESDLHPAEKKR-----SCQRSS----------RQQQQ----------------REPWSSIDPQSVAAR----------------------RRRKRISERVRWLE--KLIPGGSKMDTASMLGEAIRYVKFLQLQVE---------------------LLEMIGGG---------------------------------------------------------------------------------DEDHHRP--PNSPLV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSEELQEVLFRKRCCVAAIKQST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [339]
'gi|56384215|gb|AAV85768.1| barren stalk1 [Zea mays] >gi|56384213|gb|AAV85767.1| barren stalk1 [Zea mays]'                           MDPYHYQTMYDPRGFPIIHPQPYLQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HPVAGALGDSR-----VRGGGS----------GARRR----------------PGAKLSTDPQSVAAR----------------------ERRHRISDRFRVLR--SLVPGGSKMDTVSMLEQAIHYVKFLKTQIS---------------------LHQAALMQ---------------------------------------------------------------------------------HEEGCH---AELAAY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-AVAVVGDNEVTLASHGRTGAC-----------DEMMQLQVAAEEALSYGVDAHQPYGLDPRQLSGGHELPPLPASCIFLEEPADACYSVCDLDDGDTGLPGSY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [219]
lcl|Smo_IND_6_1_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIQQQENAPRAGDDRHVPEQELARGARLAPCSDDDHTDIDMIDRRELCSSK-----------E---QPKLMEVEASPPVAASHQSNKRQRGCFTLQNVSESLQHHSVIFHNVGVAAKLSEAMLLQINS--------------------SVARNPSPVSPVAASARNPSSTI-------------------------------------------------------------------------------------------------------------------TSSSATTTTST-----GSGGGG----------HGSFS----------------YRFKETVEPQSIAAR----------------------QRRKKISERVRELE--KLVPGGNKLDTASMLDEAIRFVKFLQIQVQ---------------------LLEAVGNGGHGNYGANNHCLNVPLNHQARMFPFS-------------------------------------------------------SSPSSSI--AISSPC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-SSSSSSSSSCASSSCNLASMAIATSSVVAMSPASIADSVLLLGSRRSSSASSSSPLVLTETLQHALFKHKRCVATIQQCPVEHLLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [352]
lcl|Ppa_IND_5_1_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?GSYRRFFSQVRVDLPIRNDHVCKRRADRITSVAAR----------------------HRRKKISERIRVLE--KLIPGGNKMDTATMLDEAIEYVKFLQLQVQ---------------------ILESNTLE---------------------------------------------------------------------------------DRPAIVP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TDQILSLQGNMV-HGLKRKRNTNLEGDSSTTL---------SLRAAASPLILSEVLQQQLFKQKLCLVSISQCPPCTTSTPPPIVAPSIRRKN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [178]
lcl|Ppa_IND_6_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKQVWPGKHRLELVELVDGEDTKSSPTQLKRPKHSTDYANVLLSDHILKG------AELRSYFHSGDVGLNASQAM-----------------------------------------------------------------------------------------------------------------------------DIIVIGP-----------ALNT----------NGKPR----------------AKRGSATDPQSVYAR----------------------HRREKINERLKNLQ--NLVPNGAKVDIVTMLDEAIHYVKFLQTQVE---------------------LLKSDEFW---------------------------------------------------------------------------------MF?NPHN--YNGIDI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DPSSMHSPELESNI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [181]
lcl|Ppa_IND902220658_1_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RIP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NGKPR----------------AKRGSATDPQSVYAR----------------------HRREKINERLKNLQ--NLVPNGAKVDIVTMLDEAIHYVKFLQTQVE---------------------LLKSDEFW---------------------------------------------------------------------------------MFANPHN--YNGIDI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DPSSMHSPELESNI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [103]
lcl|Ppa_IND_11_1_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLQVDSRGSPEIVDSENSELNPTQLKRSKLFENHPNALWSDQSMNG------RELRSYSHLVGSSLTASQPM-----------------------------------------------------------------------------------------------------------------------------DIIAIGP-----------ALNT----------DGKPR----------------AKRGSATDPQSVYAR----------------------HRREKINERLKSLQ--NLVPNGAKVDIVTMLDEAIHYVKFLQNQVE---------------------LLKSDELW---------------------------------------------------------------------------------IYATPNK--YNGMDI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DLSDMYLQELESPTLLQSQIQFGLRIVRPTHVKDIQRVNGYSCICPTHCHPIA?---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [217]
'gi|30688869|ref|NP 194827.2| DNA binding / transcription factor [Arabidopsis thaliana]'                                    ---------------------------------------------------------MNSSSLLTPSSSPSPHLQSPA-TFDHDDFLHHIFSSTPWPSSVLDDTPPPTSDCAPVTGFHHHDADSRNQITMI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLSHNHPNDALFNGFSTGSL----------------PFHLPQGSGGQTQTQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQATASATTGG-----ATAQPQT---------KPKVR----------------ARRGQATDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNGNKTDKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAASAS---SQISED-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGSHENTSSSG----------------------------EAKMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDTGVPLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PNLSTTIVANGNGSSLVTVKDAPSVSKP-------------------------------------------------------------------   [310]
'gi|20127075|gb|AAM10956.1| putative bHLH transcription factor [Arabidopsis thaliana]'                                    ---------------------------------------------------------MNSSSLLTPSSSPSPHLQSPA-TFDHDDFLHHIFSSTPWPSSVLDDTPPPTSDCAPVTGFHHHDADSRNQITMI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLSHNHPNDALFNGFSTGSL----------------PFHLPQGSGGQTQTQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQATASATTGG-----ATAQPQT---------KPKVR----------------ARRGQATDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNGNKTDKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAASAS---SQISED-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGSHENTSSSG----------------------------EAKMTEHQ?AKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDTGVPLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PNLSTTIVANGNGSSLVTVKDAPSVSKP-------------------------------------------------------------------   [310]
'gi|7270000|emb|CAB79816.1| putative protein [Arabidopsis thaliana] >gi|2980768|emb|CAA18195.1| putative protein [Arabidopsis th'    MVNLVNVFNMSKSNPSNLKYYNLHPSFKHHKALNLKRHFNNIHFHSHSPPKKKKTEAMNSSSLLTPSSSPSPHLQSPA-TFDHDDFLHHIFSSTPWPSSVLDDTPPPTSDCAPVTGFHHHDADSRNQITMI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLSHNHPNDALFNGFSTGSL----------------PFHLPQGSGGQTQTQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQATASATTGG-----ATAQPQT---------KPKVR----------------ARRGQATDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNGNKTDKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAASAS---SQISED-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGSHENTSSSG----------------------------EAKMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDTGVPLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PNLSTTIVANGNGSSLVTVKDAPSVSKP-------------------------------------------------------------------   [367]
'gi|22327541|ref|NP 680385.1| DNA binding / transcription factor [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------MENEAF------------------------------------------------VDGELE-------------------------------SLLGMFNFDQCSSN-----------------------------------------------------------------ESSFCNAPNETDVFSSD---------------DFFPFGTILQSN-----------Y---AAVLDGSNHQTNRNVD--------------------------------SRQDLLKPRKKQKLSSESNLV------TEPKTAWRDGQSLSSYNSSD-----------------------------------------------------------------------------------------------------------------------------DEKALGLVSN-------TSKSL----------KRKAK----------------ANRGIASDPQSLYAR----------------------KRRERINDRLKTLQ--SLVPNGTKVDISTMLEDAVHYVKFLQLQIK---------------------LLSSEDLW---------------------------------------------------------------------------------MYA-PLA--HNGLNM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-LHHNLLSRLI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [223]
'gi|50938819|ref|XP 478937.1| transcription factor (bHLH)-like protein [Oryza sativa (japonica cultivar-group)] >gi|50509377|dbj'    -----------------------------------------------------------------------------------------------------MAQFLGAHGDHCFTYEQMDESMEAMAAMFLPGLDTDSN----------------------------------------------------------------------------------------------------SSSGCLNYDVPPQCWPQHGHSSSVTSFPDPAHSYGSFEFPVMDPFPIADLDAHC-----------A---IPYLTEDLISPPHGNHPSARVEEAT-----------KVVTPVATKRKSSAAMTASKKSKKAGKKDPIGS------DEGGNTYIDTQSSSSCTSEE----------------------------------------------------------------------------------------------------------------------------------GNLEGN-----AKPSSK----------KMGTR----------------ANRGAATDPQSLYAR----------------------KRRERINERLRILQ--NLVPNGTKVDISTMLEEAVQYVKFLQLQIK---------------------LLSSDDTW---------------------------------------------------------------------------------MYA-PIA--YNGVNI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNIDLNISSLQK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [279]
'gi|34894196|ref|NP 908423.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|13486646|dbj|BAB39884.1| unknown prot'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAQASSKRGMLLPREAVLYDDEPSMPLEILGYHGNGVGGGGCVDADYYYSWSGSSSSSSSSVLSFDQAAVGGSGGGCARQLAFHPGGDDDDCAMWMDAAAGAMVENTSVVAGGGNNYCHRLQFHG-----------G---AAGFGLASPGSSVVDNGLEIHESNV-----------SKPPPPAAKKRACPSGEARAAGKKQ---------------------------------------------------------------------------------------------------------------------------------------------------------------CRKGSKPNKAA-----SASSPS----------PSPSP----------------SPSPNKEQPQSAAAK----------------------VRRERISERLKVLQ--DLVPNGTKVDLVTMLEKAINYVKFLQLQVK---------------------VLATDEFW---------------------------------------------------------------------------------PAQGGKA--PELSQV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-DALDAILSSQHPNK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [294]
'gi|18396475|ref|NP 564293.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|21553570|gb|AAM62663.1| unknown [Ara'    ---------------------------------------------------------------------------------------------------------------------------------MDVFVDGELE-------------------------------SLLGMFNFDQCSSS-------------------------------------------------KEERPRDELLGLSSLYNGHLHQHQHHNNVLSSDHHAFLLP--------DMFPFGAMPGGN---------------LPAMLDSWDQSHHLQETSSLKRKLLDV---------ENLCKTNSNCDVTRQELAKSKKKQRVSSESNTV------DESNTNWVDGQSLSNSSDDE---------------------------------------------------------------------------------------------------------------------------------------K-----ASVTSV----------KGKTR----------------ATKGTATDPQSLYAR----------------------KRREKINERLKTLQ--NLVPNGTKVDISTMLEEAVHYVKFLQLQIK---------------------LLSSDDLW---------------------------------------------------------------------------------MYA-PLA--YNGLDM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-FHHNLLSRLM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [258]
lcl|Ppa_IND_10_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNFVREPQEQRLSSISDLSLIPDSHAD------------------PHSIGFISGTFRTDSHGTGIRKNRIFLSDEESDFLPKKRSKYTVRGDFQMDRFDAVWGNTGLRGSSCPGN------------------------------------------------------------------------------------------------------------------------------------------------------SVSQMMAIYEF-----GPALNR----------NGRPR----------------VQRGSATDPQSVHAR----------------------ARREKIAERLRKLQ--HLIPNGGKVDIVTMLDEAVHYVQFLKRQVT---------------------QSDADGGP---------------------------------------------------------------------------------DFEICVA--NAASEI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R-RVLDVRHADLVPEQIRRLQSGSRREQLILQESWHVATVRQHGKSAVPPKSTMCQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [254]
'gi|77556960|gb|ABA99756.1| Helix-loop-helix DNA-binding domain, putative [Oryza sativa (japonica cultivar-group)]'                  ------------------------------------------------------------------------------------------------MEGGGLIADMSWTVFDLPSHSDESEMMAQLFSAF--PIHGEEE------------GHEQLPWFDQSSNPCYYSCNASSTAYSNSNASS----------------------------------------------------------IPAPSEYEGYCFSDSNEALGVSSSIAPHDLSMVQVQGATEFLNVIPNHSLD-----------SFGNGELGHEDLDSVSGTNKRKQSAEGEF------------DGQTRGSKCARKAEPKRAKKAKQTVEKDASVA---------------IPNGSCSISDN-----------------------------------------------------------------------------------------------------------------------------DSSSSQEVAD-------AGATS----------KGKSR----------------AGRGAATDPQSLYAR----------------------KRRERINERLKTLQ--NLVPNGTKVDISTMLEEAVHYVKFLQLQIK---------------------LLSSDEMW---------------------------------------------------------------------------------MYA-PIA--YNGMNI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-LDLNIDT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [304]
'gi|51090797|dbj|BAD35275.1| bHLH transcription factor PTF1 [Oryza sativa (japonica cultivar-group)]'                                --------------------------------------------------------------------------------------------------MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSL-KITENERNPTMLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSIPPGVLQCNSTSGTFDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAML-----------N---KTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVLQALGAGGLKAAQQEQNIRNIPLP--------------------TFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHS----------------------------------------------------------------------------------------------------SDVEPQANSAP-----GNSANA----------KPRTR----------------ARRGQATDPHSIAER----------------------LRREKISERMKNLQ--VLVPNSNKADKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG----------------------------------------------------------------------------------APGAVL--PLLRES---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-TECHSNPSLSASTISQGPPDMPDSE---------------------DSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [478]
'gi|51090798|dbj|BAD35276.1| putative bHLH transcription factor PTF1 [Oryza sativa (japonica cultivar-group)]'                       --------------------------------------------------------------------------------------------------MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSL-KITENERNPTMLANGCLPYNTQAHPLSGQILPK-----------------------------------------------------------------------------APTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAML-----------N---KTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVLQALGAGGLKAAQQEQNIRNIPLP--------------------TFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHS----------------------------------------------------------------------------------------------------SDVEPQANSAP-----GNSANA----------KPRTR----------------ARRGQATDPHSIAER----------------------LRREKISERMKNLQ--VLVPNSNKADKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG----------------------------------------------------------------------------------APGAVL--PLLRES---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-TECHSNPSLSASTISQGPPDMPDSE---------------------DSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [401]
'gi|29424047|gb|AAO73566.1| bHLH transcription factor PTF1 [Oryza sativa]'                                    --------------------------------------------------------------------------------------------------MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSL-KITENERNPTMLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSIPPGVLQCNSTSGTFDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAML-----------N---KTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVLQALGAGGLKAAQQEQNIRNIPLP--------------------TFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHS----------------------------------------------------------------------------------------------------SDVEPQANSAP-----GNSANA----------KPRTR----------------ARRGQATDPHSIAER----------------------LRREKISERMKNLQ--VLVPNSNKADKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG----------------------------------------------------------------------------------APGAVL--PLLRES---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-TECHSNPSLSASTISQGPTDMPDSE---------------------DSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [478]
'gi|42569042|ref|NP 179083.2| transcription factor [Arabidopsis thaliana] >gi|33111969|emb|CAE12171.1| putative bHLH084 transcri'    -----------------------------------------------------------------------------------------------------MEAMGEWSTGLGGIYTEEADFMNQLLASYEQPCGGSSS---ETTATLTAYHHQGSQWN--------------GGFCFSQESSSYSG----------YCAAMPRQEEDNNGMEDATINTNLYLVGEETSECDATEY-SGKSLLPLETVAENHDHSMLQPENSLTTTTD----------------------------------------EKMFNQCESSKKRTRATTTDKNKRANKARRSQKCVEMSGENENSGEEEYTEKAAGKRKTKPLKPQK----------------------TCCSDDESNGG-------------------------------------------------------------------------------------------------------------------------DTFLSKEDGED-----SKALNL----------NGKTR----------------ASRGAATDPQSLYAR----------------------KRRERINERLRILQ--HLVPNGTKVDISTMLEEAVQYVKFLQLQIK---------------------LLSSDDLW---------------------------------------------------------------------------------MYA-PIA--YNGMDI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-LDLKLNALTR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [328]
'gi|15219658|ref|NP 176820.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|22135862|gb|AAM91513.1| unknown prot'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------MALVNDHPNETNYLSKQNSSSSEDLSSPGLDQPDAAYAGGGGGGGSASSSSTMNSDHQQHQGFVFYPSGE--DHHNSLMDFNGSSFLNFDHHESFPPPAISCGGSSGGGGFSFLEGNNMSYGFTNWNHQHHMDI--------------------------------ISPRSTETPQGQKDWLYSDSTVVTTGSRNESLSPKSAGNKRS-----------------------------------------------------------------------------------------------------------------------------------------------------------------HTGESTQPSKK-----LSSGVT----------GKTKP----------------KPTTSPKDPQSLAAK----------------------NRRERISERLKILQ--ELVPNGTKVDLVTMLEKAISYVKFLQVQVK---------------------VLATDEFW---------------------------------------------------------------------------------PAQGGKA--PDISQV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-DAIDAILSSSQRDRNSNLITN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [298]
'gi|50428697|gb|AAT77048.1| putative transcription factor [Oryza sativa (japonica cultivar-group)]'                                  ------------------------------------------------------------------------------------------------MESGGVIAEAGWSSLDMSSQAEESEMMAQLLGTCFPSNGEDDH-------------HQELPWSVDTPSAYYLHCNGGSSSAYSSTTSSNSASGSF-------------------------------------------------TLIAPRSEYEGYYVSDSNEAALGISIQEQGAAQFMDAILNRNGDPGFDDLADS-----------S---VNLLDSIGASNKRKIQEQGRLDDQT-------------------KSRKSAKKAGSKRGKKAAQCEG---------EDGSIAVTNRQSLSCCTSEN-----------------------------------------------------------------------------------------------------------------------------DSIGSQE---S-----PVAAKS----------NGKAQ----------------SGHRSATDPQSLYAR----------------------KRRERINERLKILQ--NLVPNGTKVDISTMLEEAMHYVKFLQLQIK---------------------LLSSDEMW---------------------------------------------------------------------------------MYA-PIA--YNGMNI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-IDLNLSQH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [310]
'gi|30689839|ref|NP 195114.2| DNA binding / transcription factor [Arabidopsis thaliana] >gi|27808578|gb|AAO24569.1| At4g33880 [A'    --------------------------------------------------------------------------------------------------MEAMGEWSNNLGGMYTYATEEADFMNQLLASYDHPGTGSSS-----GAAA-SGDHQGLYWNLGSHHNHLSLVSEAGSFCFSQESSSYSAGNSGYYTVVPPTVEENQNETMDFGMEDVTINTNSYLVGEETSECDVEKYSSGKTLMPLETVVENHDDEESLLQSEIS--------------------------------------------VTTTKSLTGSKKRSRATSTDKNKRARVNKRAQKNVEMSGDN-NEGEEEEGETKLKKRKNGAMMSRQNSSTTFCTEEESNCADQDGGGEDSSSKED--------------------------------------------------------------------------------------------------------------------------------------DP-----SKALNL----------NGKTR----------------ASRGAATDPQSLYAR----------------------KRRERINERLRILQ--NLVPNGTKVDISTMLEEAVHYVKFLQLQIK---------------------LLSSDDLW---------------------------------------------------------------------------------MYA-PIA--FNGMDI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-LSSPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [352]
'gi|20127093|gb|AAM10959.1| putative bHLH transcription factor [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------MEAMGEWSNNLGGMYTYATEEADFMNQLLASYDHPGTGSSS-----GATA-SGDHQGLYWNLGSHHNHLSLVSEAGSFCFSQESSSYSAGNSGYYTVVPPTVEENQNETMDFGMEDVTINTNSYLVGEETSECDVEKYSSGKTLMPLETVVENHDDEESLLQSEIS--------------------------------------------VTTTKSLTGSKKRSRATSTDKNKRARVNKRAQKNVEMSGDN-NEGEEEEGETKLKKRKNGAMMSRQNSSTTFCTEEESNCADQDGGGEDSSSKED--------------------------------------------------------------------------------------------------------------------------------------DP-----SKALNL----------NGKTR----------------ASRGAATDPQSLYAR----------------------KRRERINERLRILQ--NLVPNGTKVDISTMLEEAVHYVKFLQLQIK---------------------LLSSDDLW---------------------------------------------------------------------------------MYA-PIA--FNGMDI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-LSSPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [352]
'gi|7270337|emb|CAB80105.1| putative protein [Arabidopsis thaliana] >gi|3297812|emb|CAA19870.1| putative protein [Arabidopsis th'    -----------------------------------------------------------------------------------------------------MGEWSNNLGGMYTYATEEADFMNQLLASYDHPGTGSSS-----GAAA-SGDHQGLYWNLGSHHNHLSLVSEAGSFCFSQESSSYSAGNSGYYTVVPPTVEENQNETMDFGMEDVTINTNSYLVGEETSECDVEKYSSGKTLMPLETVVENHDDEESLLQSEIS--------------------------------------------VTTTKSLTGSKKRSRATSTDKNKRARVNKRAQKNVEMSGDN-NEGEEEEGETKLKKRKNGAMMSRQNSSTTFCTEEESNCADQDGGGEDSSSKED--------------------------------------------------------------------------------------------------------------------------------------DP-----SKALNL----------NGKTR----------------ASRGAATDPQSLYAR----------------------KRRERINERLRILQ--NLVPNGTKVDISTMLEEAVHYVKFLQLQIK---------------------LLSSDDLW---------------------------------------------------------------------------------MYA-PIA--FNGMDI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-LSSPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [349]
'gi|77552099|gb|ABA94896.1| Helix-loop-helix DNA-binding domain, putative [Oryza sativa (japonica cultivar-group)]'                  -----------------------------------------------------------------------------------------------------MDARCANIWSSADARSEESEMIDQLKSMFWSSTDAEINFYS----------------------------------------------------------------------------------------------------------------PDSSVNSCVTTSTMPSSLF-----------------------------------LPLMDDEGFGTVQLMHQVITGNKRM------------FPMDEHFEQQQKKPKKKTRTSRSVSSSSTITD------YETSSELVNPSCSSGSS--------------------------------------------------------------------------------------------------------------------------------VGEDSIAATDG-----SVVLKQ----------SDNSR----------------GHKQCSKDTQSLYAK----------------------RRRERINERLRILQ--QLVPNGTKVDISTMLEEAVQYVKFLQLQIK---------------------LLSSDDTW---------------------------------------------------------------------------------MFA-PLA--YNGMNM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D-LGHTLAENQE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [246]
'gi|15224109|ref|NP 180003.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|4115386|gb|AAD03387.1| unknown prote'    ---------------------------------------------------------MMNSSLLTPSSSSSSHIQTPSTTFDHEDFLDQIFSSAPWP-SVVDDAHPLPSD-----GFHGHDVDSRNQPIMMM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLNDGSSVHALYNGFSVAGSLP--------------NFQIPQGSGGGLMNQQGQTQTQTQ----------------------------------------------------------------------------------------------------------------------------------------------------------------PQASASTATGG-----TVAAPPQS--------RTKIR----------------ARRGQATDPHSIAER----------------------LRRERIAERMKALQ--ELVPNGNKTDKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAASVS---SQISEA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGSHGNASSAMVGGSQTAGNSND----------------SVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLIPGAVADVG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSSIAVKEAVSVSKA-------------------------------------------------------------------   [350]
'gi|51970922|dbj|BAD44153.1| putative bHLH transcription factor (bHLH066) [Arabidopsis thaliana]'                                    ---------------------------------------------------------MMNSSLLTPSSSSSSHIQTPSTTFDHEDFLDQIFSSAPWP-SVVDDAHPLPSD-----GFHGHDVDSRNQPIMMM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLNDGSSVHALYNGFSVAGSLP--------------NFQIPQGSGGGLMNQQGQTQTQTQ----------------------------------------------------------------------------------------------------------------------------------------------------------------PQASASTATGG-----TVAAPPQS--------RTKIR----------------ARRGQATDPHSIAER----------------------LRRERIAERMKALQ--ELVPNGNKTDKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAASVS---SQISEA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGSHGNASSAMVGGSQTAGNSND----------------SVTMTEHQVAKLMEEDMGSAMQYLQGEGLCLMPISLATAISTATCHSRNPLIPGAVADVG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSSIAVKEAVSVSKA-------------------------------------------------------------------   [350]
'gi|50912031|ref|XP 467423.1| bHLH protein-like [Oryza sativa (japonica cultivar-group)] >gi|41052857|dbj|BAD07771.1| bHLH prote'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MALVRERAMVYGGGCDAEAFGGGFESSQMGYGHDALLDIDAAALFGGYEAAASAGCALVQDGAAGWAGAGASSSVLAFDRAAQAEEAECDAWIEAMDQSYGAGGEAAPYRST--------TAVAFDAATGCFSLTERATGGGGGAGGRQFGLLFPSTSGGGVSPERAAPAPAPRGSQKRAHAES------------------------------------------------------------------------------------------------------------------------------------------------------------SQAMSPSKKQC-----GAGRKA----------GKAKS----------------APTTPTKDPQSLAAK----------------------NRRERISERLRILQ--ELVPNGTKVDLVTMLEKAISYVKFLQLQVK---------------------VLATDEFW---------------------------------------------------------------------------------PAQGGKA--PEISQV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-EALDAILSSSSPLMGQLMN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [298]
'gi|50901308|ref|XP 463087.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] >gi|37991892|gb|AAR06338.1| hypothet'    -----------------------------------------------------------------------------------------------------------------------------MQGDPGYGYGGYGYGYGYGYGGA-GYDMAGYGGGGGGYYTS---------DPYNAAPAAYEDPLAVAGRRQHDFPAPLTGVEFQPSDTCPKNYVIFDQTYDRSRVMFHPSLANNLGNSGGGYDHHHHCGYGGFEQD-----------------------------------------------YASKSAYYGVEDDGGGGCSIRQKED-----------TDEIDALMSTE------DGEEEDDVL--------------------STGRTPGCRAGGSPDSTCS-------------------------------------------------------------------------------------------------------------------------------------------------------SGASR----------------SDCGGGRKPEAGGGE----------------------RKKERMKKMMRTLK--GIIPGGDRMDTPAVLDEAVRYLKSLKVEVK---------------------KLGPVRRR---------------------------------------------------------------------------------RRRNSSRAPPPLWSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSLGMVAVGFAKLLPSSSRPPFPPKIAGAPLSPSTRTSPPPRPRRRHCRLSSIVVRALGEFAASPSTRRCCPFAPPRRHSPASTRCRAAIGNDVIVDVSATSAVDPW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [384]
'gi|54290353|dbj|BAD61157.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|54290253|dbj|BAD61185.1| unknown prote'    ------------------------------------------------------------------------------------------------------------------------------------------------MQRD-PTAFTGNPSFAYGHEADGYIANGPLGGQCNYRVPVSPAFGAPSGMTSPQLRTSLGGFEFQPSKVCPRNFIIFDQTDDKGRIMCHPALVSKLNPSATNAFPSY---------------------------------------------------------PEPICRSSGQDNGNLEEVSSSFKED-----------TREIDALLSSD------EESDEDDVK--------------------STGRTPDCFESDSLDSS---------------------------------------------------------------------------------------------------------------------------------------------------------SPPRS----------------RKMHHSSSQSSVFHGSMDT------------------VTHERMRNMVTVLR--GIIPGGDQLDTASVIEEAVRYLKFLKMEAK---------------------KLGVEVSD---------------------------------------------------------------------------------N----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [245]
'gi|6693022|gb|AAF24948.1| T22C5.19 [Arabidopsis thaliana]'                                    ---------------------------------------------------------------------------------------------------------------------------------MDVFVDGELE-------------------------------SLLGMFNFDQCSSS-------------------------------------------------KEERPRDELLGLSSLYNGHLHQHQHHNNVLSSDHHAFLLP--------DMFPFGAMPGGN---------------LPAMLDSWDQSHHLQETSSLKRKLLDV---------ENLCKTNSNCDVTRQELAKSKKKQRVSSESNTV------DESNTNWVDGQSLSNSSDDE---------------------------------------------------------------------------------------------------------------------------------------K-----ASVTSV----------KGKTR----------------ATKGTATDPQSLYAR----------------------KRREKINERLKTLQ--NLVPNGTKVDISTMLEEAVHYVKFLQLQIKVCRLLKGFFVFSQNLIITHVQLLSSDDLW---------------------------------------------------------------------------------MYA-PLA--YNGLDM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-FHHNLLSRLM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [279]
'gi|34912872|ref|NP 917783.1| P0006C01.20 [Oryza sativa (japonica cultivar-group)]'                                    --------------------------------------------------------------------------------------------------------------MYVKVELKRFRIVKEVGTIVMNVRIFAYYQLMQVCQRD-PTAFTGNPSFAYGHEADGYIANGPLG-----------------GMTSPQLRTSLGGFEFQPSKVCPRNFIIFDQTDDKGRIMCHPALVSKLNPSATNAFPSY---------------------------------------------------------PEPICRSSGQDNGNLEEVSSSFKED-----------TREIDALLSSD------EESDEDDVK--------------------STGRTPDCFESDSLDSS---------------------------------------------------------------------------------------------------------------------------------------------------------SPPRS----------------RKMHHSSSQSSVFHGSMDT------------------VTHERMRNMVTVLR--GIIPGGDQLDTASVIEEAVRYLKFLKMEAK---------------------KLGVEVSD---------------------------------------------------------------------------------N----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [262]
'gi|15240346|ref|NP 198596.1| DNA binding / transcription factor [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSLINEHCNERNYISTPNSSEDLSSPQNCGLDEGASASSSSTINSDHQNNQGFVFYPSGETIEDHNSLMDFNASSFFTFDNHRSLISPVTNGGAFPVVDG-------NMSYSYDGWSHHQVDSI-----------SPRVIKTPNSFETTSSFGLTSNSMSKPATNHGNGDWLYSGSTIVNIGSRHESTSPKLAGNKRP-----------------------------------------------------------------------------------------------------------------------------------------------------------------FTGENTQLSKK-----PSSGTN----------GKIKP----------------KATTSPKDPQSLAAK----------------------NRRERISERLKVLQ--ELVPNGTKVDLVTMLEKAIGYVKFLQVQVK---------------------VLAADEFW---------------------------------------------------------------------------------PAQGGKA--PDISQV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-EAIDAILSSSQRDSNSTRETSIAE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [307]
'gi|10177170|dbj|BAB10359.1| unnamed protein product [Arabidopsis thaliana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDFNASSFFTFDNHRSLISPVTNGGAFPVVDG-------NMSYSYDGWSHHQVDSI-----------SPRVIKTPNSFETTSSFGLTSNSMSKPATNHGNGDWLYSGSTIVNIGSRHESTSPKLAGNKRP-----------------------------------------------------------------------------------------------------------------------------------------------------------------FTGENTQLSKK-----PSSGTN----------GKIKP----------------KATTSPKDPQSLAAK----------------------NRRERISERLKVLQ--ELVPNGTKVDLVTMLEKAIGYVKFLQVQVK---------------------VLAADEFW---------------------------------------------------------------------------------PAQGGKA--PDISQV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-EAIDAILSSSQRDSNSTRETSIAE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [239]
'gi|52077404|dbj|BAD46515.1| bHLH protein-like [Oryza sativa (japonica cultivar-group)]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAMVAGDEAMSVPWHDVGVVVDPEAAGTAPFDAGAGYVPSYGQCQYYYYYDDHHHHPCSTELIHAGDAGSAVAVAYDGVDGWVHAAAAATSP-----------S---SSSALTFDGHGAEEHSAVSWMDMDMDAHGAAPPLIGYGPTAATSSPSSCFSSGGSGDSGMVM--------------------VTTTTPRSAAASG-----------------------------------------------------------------------------------------------------------------------------SQRRARPPPSP-----LQGSEL----------HEYSK----------------KQRANNKETQSSAAK----------------------SRRERISERLRALQ--ELVPSGGKVDMVTMLDRAISYVKFMQMQLR---------------------VLETDAFW---------------------------------------------------------------------------------PASDGAT--PDISRV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-DALDAIILSSSSPSQKASPPRSG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [294]
'gi|55296133|dbj|BAD67851.1| basic helix-loop-helix protein SPATULA-like [Oryza sativa (japonica cultivar-group)]'                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDEQRGRGGFDELVLLHQQQEQRRRREQQQEEEEEEEVRRQMFGAVVGGLAA--------------------FPAAAAALGQQQVDCGGELGGFCD------------------------------------------------------------------------------------------------------------------SEAGGSSEPEA-----AAGARP----------RGGSG----------------SKRSRAAEVHNLSEK----------------------RRRSKINEKMKALQ--SLIPNSNKTDKASMLDEAIEYLKQLQLQVQ---------------------MLSMRNGV---------------------------------------------------------------------------------YLNPSYL--SGALEP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AQASQMFAALGGNNVTVVHPGTVMPPVNQSSGAHHLFDPLNSPPQNQPQSLILPSVPSTAIPEPPFHLESSQSHLRQFQLPGSSEFHKILFLHVLLSVKDGVSWRDNAKAPPIITSRKSARKRDELHQERIIHVEHQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [315]
'gi|50909589|ref|XP 466283.1| putative bHLH transcription factor PTF1 [Oryza sativa (japonica cultivar-group)] >gi|46390356|dbj|'    ---------------------------------------------------------------------------------------------------------------------------------------------MGGFAYP-FTPSPAWSRDAVFAGSPWAAGGVSSLADALVSYGAVDDEEAAFLGKTAASSPSTARLHEQQQLLLEAELLRHGDGLGFAAMDDDGGAAMLGALEPCAMPLTDSGGPPVICSSSSNDSSGSEHSAAMPAGGGFLVGEQQQH-------------------------VPPAAYAAGGVLPSMAAGE-----------ETPQSFGFGSLFNGDLLQEATVSKYH--------------------HHQQQQQLGVVPSSQPHHLNDDIDFNTGKLMSFASGQQHVTPSIDSLQIDQKEFSSGLHHLNLSSLISGPLASFNATQSHRQPAEACGGKNGGAAPFVNLS-------------------------------------EVLPKGNGSGS-----AGNGAP----------KPRVR----------------ARRGQATDPHSIAER----------------------LRREKISDRMKDLQ--ELVPNSNKTNKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------AAEAV-V--PLLTET---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-TESPGFLLSPRSSSGERQAGAGAVTGGLPGDQPELLD---------GGAMFEQEVVKLMEDNMTTAMQYLQSKGLCLMPVALASAISAQKGTSSAAVRPEKKKNGD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GDGGGDEEDVKGEFDAPRRPPVGRPKEMRSRV------------------------------------------------------------------------------------   [524]
'gi|20127072|gb|AAM10955.1| putative bHLH transcription factor [Arabidopsis thaliana]'                                    ---------------------------------------------------------MMNSSLLTPSSSSSSHIQTPSTTFDHEDFLDQIFSSAPWP-SVVDDAHPLPSD-----GFHGHGVDSRNQPIMMM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLNDGSSVHALYNGFSVAGSLP--------------NFQIPQGSGGGLMNQQGQTQTQTQ----------------------------------------------------------------------------------------------------------------------------------------------------------------PQASASTATGG-----TVAAPPQS--------RTKIR----------------ARRGQATDPHSIAER----------------------LRRERIAERMKALQ--ELVPNGNKTDKASMLDEIIDYVEFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAASVS---SQISEA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGSHGNASSAMVGGSQTAGNSND----------------SVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLIPGAVADVG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSSIAVKEAVSVSKA-------------------------------------------------------------------   [350]
lcl|Smo_IND_16_2_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNCSYDTKN-----------S---GRTLGNANDSSFTATTGGSRSDKTD-----------RDC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRVDVEDTAGC-----QIRRDK----------KPPKG----------------SKRSRAAEVHNLSER----------------------KRRDRINERMKALQ--ELIPNSNKTDKASMLDEAIEYLKLLQHQLQ---------------------VVCPISWL----------------------------------------------------------------------------------DSKSAF--PFVPDD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-HEKRDDVPNGSSRFITVRCGSTPGRRGRAPFPTASGTPFQCWSSSHECSIPAGSEHRFVQCALDDPPSTATPDPNSATAAAAAAAKPAAKFFPAAKAREASMRNHE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSKASFLFSSQIQDKMAGIPSIPKNEEQAKDRLLCSFCARLLCTAQSFVTL-----------------------------------------------------------------   [297]
'gi|77556222|gb|ABA99018.1| Helix-loop-helix DNA-binding domain, putative [Oryza sativa (japonica cultivar-group)]'                  -----------------------------------------------------------------------------------------------------------MECSSFEAICNESEMIAHLQSLFWSSSDADPCFGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------SSFSLISSEGYDTMTTEFVNSSTNVCFDYQDDSFVSAEETTIGNKRKVQMDT------------------------------------------------------------------------------------------------------------------------------------------------------------------------ENELMTNRSKE-----VRTKMS----------VSKAC----------------KHSVSAESSQSYYAK----------------------NRRQRINERLRILQ--ELIPNGTKVDISTMLEEAIQYVKFLHLQIK---------------------LLSSDEMW---------------------------------------------------------------------------------MYA-PLA--FDSGNN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R-LYQNSLSQE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [198]
'gi|15242922|ref|NP 200609.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|8885595|dbj|BAA97525.1| unnamed prot'    ----------------------------------------------------------------MENGNGEGKGEFINQNNDFFLDSMSMLSSLPPCWDPSLPPPPPPPQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLFHALAVDAPFPD----------------------QFHHPQESGGPTMGSQEG----------------------------------------------------------------------------------------------------------------------------------------------------------------------LQPQGTVSTTS-----APVVRQ----------KPRVR----------------ARRGQATDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNTNKTDKASMLDEIIEYVRFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAGSVG---PRLNGL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S------AEAGGRLNALTAPCNGLNGNGNATGSSNE------------SLRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISSSTTHSRGSLFNPISSAVA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AEDSNVTATAVAAPEASSTMDDVSASKA----------------------------------------------------------------------------------------   [297]
'gi|50907503|ref|XP 465240.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|51979220|ref|XP 507475.1| PREDICTED P'    -----------------------------------------------------------------------------------------------------------------------MQGDHGYYGGRDSPPQGYGYGGGYGYGGGYGYDAGGYYSGGGGGYPS-----------AGAAAAAYEDPM--VGRRTHDFPAPMNELEFQPSATCPKNYVIFDQTCTKSRVMFHPSLAHKFGGGSSAYDNNVYGGGGAHDAA-----------------------------------------------KGAYRDSVGYDDD--DSCSVRQKED-----------TDEIDALLSSE-------DGDEDDVV--------------------STGRTPGYRDGSSPDSTCSS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------SYGGGQARPG---------------------------RKKERMKKMVRTLK--GIIPGGNQMDTPAVLDEAVRYLKSLKVEVK---------------------KLGVRGSD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [254]
'gi|50915588|ref|XP 468258.1| basic helix-loop-helix (bHLH) -like [Oryza sativa (japonica cultivar-group)] >gi|47497231|dbj|BAD1'    ----------------------------------------------------------------MQPNARQMRGGGGGGGGGQDDFFDQMLSTLPAVWSELGSGKPAWD----------------------------------------------------------------------------------------LTAGAVGGGGGASDDHSAAAFDDSALLASRLRQHQIDG----GGDKPIMLQLSDLHRHHGLAAGDDSGGAAGFLPLSLFADRSQDDIDAAFK-------------------SPNGARGDHALYNGFGAAGMHGAAA-----------MQPPPFGQGGSMPAQSFGGGAAASGGGGGGSAS-------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGASSGG-----GAAAPP----------RQRQR----------------ARRGQATDPHSIAERVYHSPTTFPFSPPFFIASMPCCLRRERIAERMKALQ--ELVPNANKTDKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GASAVA---PLVANM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S------SESNGNGNATSSSGNGEAANGSSNGDNNGGG----------TLRVTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISSATSSSLLPRTGGGAGGSL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HEGGNGTSPPLVNGTATGCDDAGVFFSVKFVVELSFLLLNEDCRGKEESKLLVQKGP-----------------------------------------------------------   [463]
'gi|55773907|dbj|BAD72512.1| bHLH transcription factor PTF1-like [Oryza sativa (japonica cultivar-group)]'                           -----------------------------------------------------------------MQPSSRDTVAGGGGEGTQDDFFDQMLSTLPSAWADLGGG------------------------------------------------------------------------------------------GGGAAGKSPWEVDPAAAAAASQVFDESALLASRLRHHQIGGAGGGGGEKPVMLQLSELHRQ---AGGGEEDGSGAFSPLPLFTDRTNVPPREEMEGGFK-----------S---PNAAAGGEHALFNGFGVHGGSGGAG-------------QPPFGQGGSMSGQSFGGPAASG----------------------------------------------------------------------------------------------------------------------------------------------------------------GTAPVTSSGGG-----GTAPPR----------QQRVR----------------ARRGQATDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNANKTDKASMLDEIIDYVKFLQLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAAGMA---PLVASM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S--------SEGNSNGSSNGGGGKASKGGTGGEGGGGGGGGGGGGTGGGMRVTEQQVAKMMEEDMGTAMQYLQGKGLCLMPISLASAISSATSSASLLSRPSIRHAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPQTMLDAAGPTSPAAMSNGDDPRHAKADGGAGGTQ--------------------------------------------------------------------------------   [420]
'gi|77999289|gb|ABB16991.1| unknown [Solanum tuberosum]'                                    -------------------------------------------------------------------------MAANQPEAYADDFLEQILAIPSYS-------------------------------------------------------------------------------------------------------------------------------------------------------------GLPVADVGTPSETTSFTSASAVSHLNSAAAAGLQQPLFPLGLSLDNGRDDV---SEAGAYAVKHERDGMNIGNLYA---------------------GLEHLQSHAVRHSVPSIHH--------------------------------------------------------------------------------------------------------------------------------------------------------------VQPFQGPPTTSTTVTVPHPPSI----------RPRVR----------------ARRGQATDPHSIAER----------------------LRRERISERIKALQ--ELVPSCNKTDRAAMLDEILDYVKFLRLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GASAVA---QLVADI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P-------LQSVEGDSGESRSNQHIWDKW-------------------SNVDTEREVAKLMEEDVGAAMQYLQSKSLCIMPISLAALIYPTQLPDDQSLVKPEAAAPS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [304]
'gi|20127051|gb|AAM10945.1| putative bHLH transcription factor [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDMIIPETDSFF?QSQPQLEFHQPLFQEEAPSQTHFDPFCDQFLSPQEIFLPNPKNEIFNETHDLDFFL-----------P---TPKRQRLVNSSYNCNTQNHFQSRNP-----------NFFDPFGDTDFVPESCTFQEFRVPDF--------------------SLAFKVG-------------------------------------------------------------------------------------------------------------------------------------------------------------------RGDQD----------------DSKKPTLSSQSIAAR----------------------GRRRRIAEKTHELG--KLIPGGNKLNTAEMFQAAAKYVKFLQSQVG---------------------ILQLMQTT---------------------------------------------------------------------------------KKGSSNV--QMETQY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-LES------------------------------------------------------------QAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNISREINKLL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKHLAN--------------------------------------------------------------------------------------------------------------   [266]
'gi|3033378|gb|AAC12822.1| hypothetical protein [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDMIIPETDSFFFQSQPQLEFHQPLFQEEAPSQTHFDPFCDQFLSPQEIFLPNPKNEIFNETHDLDFFL-----------P---TPKRQRLVNSSYNCNTQNHFQSRNP-----------NFFDPFGDTDFVPESCTFQEFRVPDF--------------------SLAFKVG-------------------------------------------------------------------------------------------------------------------------------------------------------------------RGDQD----------------DSKKPTLSSQSIAAR----------------------GRRRRIAEKTHELG--KLIPGGNKLNTAEMFQAAAKYVKFLQSQVG---------------------ILQLMQTT---------------------------------------------------------------------------------KKGSSNV--QMETQY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-LES------------------------------------------------------------QAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNISREINKLL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKHLAN--------------------------------------------------------------------------------------------------------------   [266]
'gi|34897210|ref|NP 909951.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|31126765|gb|AAP44685.1| unknown prote'    ----------------------------------------------------------------------MAGQQPQQQGPPEDDFFDQFFSLTSSF--------------------------------------------------------------------------------------------------------------------------------------------------------------PGAAPGGRAAGDQPFSLALSLDAAAAAEASGSGKRLGV-----------G---DDAEGGGSKADRETVQLTGLFP------------------PVFGGGGVQPPNLRPTPPTQVFHP------------------------------------------------------------------------------------------------------------------------------------------------------------QQSKQGGAAVG-----PQPPAP----------RPKVR----------------ARRGQATDPHSIAER----------------------LRRERIAERMRALQ--ELVPNTNKTDRAAMLDEILDYVKFLRLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAGAVA---QLVADI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P--------LSVKGEASDSGGNQQIWEKW-------------------STDGTERQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYDTQQTQDGQPVKHEPNTPS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [294]
'gi|42569619|ref|NP 181028.2| DNA binding / transcription factor [Arabidopsis thaliana] >gi|29824940|gb|AAO92056.1| hypothetical'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSMDCLSYFFNYDPPVQLQDCFIPEMDMIIPETDSFFFQSQPQLEFHQPLFQEEAPSQTHFDPFCDQFLSPQEIFLPNPKNEIFNETHDLDFFL-----------P---TPKRQRLVNSSYNCNTQNHFQSRNP-----------NFFDPFGDTDFVPESCTFQEFRVPDF--------------------SLAFKVG-------------------------------------------------------------------------------------------------------------------------------------------------------------------RGDQD----------------DSKKPTLSSQSIAAR----------------------GRRRRIAEKTHELG--KLIPGGNKLNTAEMFQAAAKYVKFLQSQVG---------------------ILQLMQTT---------------------------------------------------------------------------------KKGSSNV--QMETQY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-LES------------------------------------------------------------QAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNISREINKLL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKHLAN--------------------------------------------------------------------------------------------------------------   [291]
'gi|50918973|ref|XP 469883.1| putative transcription factor [Oryza sativa (japonica cultivar-group)] >gi|17027282|gb|AAL34136.1|'    -------------------------------------------------------------------------------MAVDWIWERRRREEEYNHQMSQDELQQPGQVQWTPAPEEKSEIAVQFFTAPYPCQNGQLDHGEHHALGG-IGACSSVHWQPDRGTCYWPPPLSGDGGGGSGSGSSGTGEGSYIGERCYYVGEPDVPIGL----------------------------------------------------------------------------------------------------NLLVGDNDGAGVVLRDAAPQAKRRT-----------QAGHGGDLGRQKKKARVSDKRNQESMQSGSCSDNES----------------------------------------------------------------------------------------------------------------------------------------------------NCSQVNRRKVD-----RVAGGG----------NGKVP----------------ARRRSATIAQSLYAR----------------------RRRERINGRLRILQ--KLVPNGTKVDISTMLEEAVHYVKFLQLQIK-----------VEVQIVCHDQMLSSDELW---------------------------------------------------------------------------------MYA-PIV--YNGMDL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-IDLNISPPR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [310]
'gi|15451582|gb|AAK98706.1| Putative SPATULA [Oryza sativa]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGLDR------------------------------------------------CESEEALGSSE-----SEQPTR----------PARPR----------------GKRSRAAEVHNLSEK----------------------RRRSRINEKMKALQ--SLIPNSSKTDKASMLDDAIEYLKQLQLQVQ---------------------MLSMRNGL---------------------------------------------------------------------------------YLPPVNL--SGAPEH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPIPQMSAALDQNSAKASDPSVVLQPVNQTSGALLPFE-----LASQHKPLFLPGVPNATALEPRFLVESSRSNLQSLRF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TEPAEMIYPDEMMLKHRLTSASESTIVPGTDEKSVRQNTYMMNADRFDRYALSKDQLQHIMPKNTESVLDMPHLQRILTKVLIVSDYKLTIQLPILDRLQTSDTKVRVEGRIKVNP   [298]
lcl|Ppa_IND_7_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAHAAPAPDFCQSFLVGGVDDSENPMIGNSVNLSTRPSQLSIPPKLSSQAVFNGSPDHPGRLCWSHQPWSSSQHTSGSGSLDYIKQHNITS-----------P---TSLAGSSPSSPTTPLDQHLFASSTL-----------QGTSPVGNISSVLKADEIQKKLAE----------------------LIGANSNKRSFSAMLGTCAAGTAYGGSSASGGKETSLSLPSLGQGGANTDKFDAAA------------------------------------------------------------------------LSALLY----SNSPADQDFRS-----NFASPP----------APKQR----------------RRHGTATDPQSIAAR----------------------TRREKFTDRIRILQ--SLVPNGERLDTVHMLSQTFEYVRFLQHKVW---------------------DLYNNKDS--------------------------------------------------------------------------------------------ISEV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-CEKWKEFVDATTGQVIV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [314]
'gi|31043851|emb|CAD32238.1| BP-5 protein [Oryza sativa]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSLADGGDNAGDLSELVRARRSSGGAARRKAEAGGGGGGASSSMLSAIGSSICGSNQVQVQQRTASEPGRRGAP---------------PSAWGARTPSPAAGPTTATATRRPPWRRRRGGPTAASAPPPPRSRRAPATGAASASGSTP----------------------------------------------------------------------------------------------------------------------------------------------------------------PRTPRAPARTRSRSRLVARKPP----------AKMTT----------------ARRSRAAEVHNLSER----------------------RRRDRINEKMRALQELELIPHCNKTDKASMLDEAIEYLKSLQLQLR---------------------VMWMGSGM----------------------------------------------------------------------------------APPLMF--PGVHQY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPRMGVRIGA?AAAMPRMPFMAAPQPVVPTPPVNHLDLGVNHLQPPPTQLYLQGVGYYPLGAKAVQQQQNPPLHVPNGSIMPPPENAPNTGSG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [335]
lcl|Smo_IND_20_1_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?FFVRGNDVYTGRGKDMESSGSYFFGI-----------G---QETLGNANDSSFTATTGGSRSDKTD-----------RDC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRVDVEDTAGC-----QIRRDK----------KPPKG----------------SKRSRAAEVHNLSER----------------------KRRDRINERMKALQ--ELIPNSNKTDKASMLDEAIEYLKLLQHQLQ---------------------VVCRSSWL----------------------------------------------------------------------------------DSKSAF--PFVPDD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-HEKRDDVPNGSSRFITIRCGSTPGRRGRAPFPTASGTPFQCWSSSHEYSIPAGSEHRFVQCALDDPPSTATPDPNSAT--AAAAAKPAAKFFPAAKARESSMKNR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [261]
lcl|Ppa_IND_9_1_unnamed_protein_product                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVTSRVSSQFRRSNLRWLLSTHLLITQ-----------H---VSVGRTSHGSVLNTLS--------------------EGPSSARSTSSVLKAEEIQKRLTEFN--------------------VDGSNTNKRSFSTM-------------------QSAKDILSRVHGGVNTDKFDAAA------------------------------------------------------------------------LSALLY----SNNRGNEDFRS-----NVVSPP----------APKQR----------------RRHGTATDPQSIAAR----------------------TRREKFTDRIRILQ--GLVPNGERLDTVHMLSQTFEYVRFLQHKVW---------------------DLYNNKDS--------------------------------------------------------------------------------------------MSEV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K-CEKWKEFIDASTGQDLNRAISCMPVTNAMLTVNRTDGALYRLLATWYEKRQNSKILSVLYFCMRVV?--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [274]
'gi|37536764|ref|NP 922684.1| putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] >gi|14165335|gb|AAK55467.1|'     -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLRFV----RKNNH----------------------KRRDRINQKMKTLQ--KLVPNSSKTDKASMLDEVIDYLKQLQAQVQ---------------------VMSRMGSM---------------------------------------------------------------------------------MMPMGMA--MPQLQM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-VMA---QMAQMAQIGL----------------------------------------SMMNMGQAGGYAPMHMHTPPFLPVSWDAAASSSSAAAADRPPQPTGAATS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAFSAFLASQAAQQNAQQPNGMEAYNRMMAMYQKLNHQQQQQQDQPSNSRQ-----------------------------------------------------------------   [191]
'gi|50915642|ref|XP 468285.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] >gi|47497385|dbj|BAD19423.1| hypothe'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGLDR------------------------------------------------CESEEALGSSE-----SEQPTR----------PARPR----------------GKRSRAAEVHNLSEK----------------------RRRSRINEKMKALQ--SLIPNSSKTDKASMLDDAIEYLKQLQLQVQ---------------------MIYPDEMM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKHRLTSASESTIVPG---------------------------------------------------------------------------------------   [110]
'gi|20127058|gb|AAM10948.1| putative bHLH transcription factor [Arabidopsis thaliana]'                                    -------------------------------------------------------------------MASNNPHDNLSDQTPSDDFFEQILGLPNFS-------------------------------------------------------------------------------------------------------------------------------------------------ASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPEGGHGSGKRFSDDVVDNRCSSMKPVFHG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QPMQQPPPSAP-----HQPTSI----------RPRVR----------------ARRGQATDPHSIAER----------------------LRRERIAERIRALQ--ELVPTVNKTDRAAMIDEIVDYVKFLRLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAGAVA---PLVTDM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------LSSSV?DETGEGGRTPQPAWEKW------------------SNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPPQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [310]
'gi|79324985|ref|NP 001031577.1| DNA binding [Arabidopsis thaliana] >gi|18411987|ref|NP 567245.1| DNA binding / transcription fa'    -------------------------------------------------------------------MASNNPHDNLSDQTPSDDFFEQILGLPNFS-------------------------------------------------------------------------------------------------------------------------------------------------ASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPEGGHGSGKRFSDDVVDNRCSSMKPVFHG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QPMQQPPPSAP-----HQPTSI----------RPRVR----------------ARRGQATDPHSIAER----------------------LRRERIAERIRALQ--ELVPTVNKTDRAAMIDEIVDYVKFLRLQVK---------------------VLSMSRLG---------------------------------------------------------------------------------GAGAVA---PLVTDM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------LSSSVEDETGEGGRTPQPAWEKW------------------SNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPPQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [310]
lcl|Smo_IND_10_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQGALREFANVYGDTEKRFIMFDRSGDKGRIMLEPNRFFEFNPSTPPNGEGPEAGEFHRVYREAMASFAAFRSMRETNSPPVTLCHIGDVKDSD-----------S---SVSKLSWDHLRDDDDEQQSSVREED-----------SEDIDALLYSDGDEGLLEEVEEEECS--------------------TGHTPLSEVTRDESSDEITSSFHA------------------------------------------------------------------------------------------------------------------ENSNRAVEQEA-----ILAVAS----------YSNRK----------------RQRSLVVRRRKEMKK----------------------QRKERIRQTVKALQ--SIVPGGDSMDPAIVLDEAILYMKVLQMRVR---------------------QLETTRQE---------------------------------------------------------------------------------DLSNAAR--A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [268]
lcl|Smo_IND_15_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQGALREFANVYGDTEKRFIMFDRSGDKGRIMLEPNRFFEFNPST-PNDEGPEAGEFHRVYREAMASFAAFRSMRETNSAPVTLCHIGDVKDSD-----------S---SVSKLSWDHLRDDDDEQQSSVREED-----------SEDIDALLYSDGDEGLLEEVEEEECS--------------------TGHTPLSEVTRDESSDEITSSFHA------------------------------------------------------------------------------------------------------------------ENSNRAVEQEA-----IVAVAS----------YSNRK----------------RQRSLVVRRRKEMKK----------------------QRKERIRQTVKALQ--SIVPGGDSMDPAIVLDEAILYMKVLQMRVR---------------------QLETTRQE---------------------------------------------------------------------------------DLSNAAR--A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [267]
'gi|4093153|gb|AAC99771.1| phytochrome-associated protein 3 [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------MPLFELFRLT-KAKLDSAQDRNPSPPVDEVVELVWENGQISTQSQSSRSRNIPPPQANSSRAREIGNGSKTTMVDEIPMSVPSLMTGLSQDDDFVPWLNHHPSLDGYCSDFLRDVSSPVTVNEQESDMAVNQTAFPLFQRRKDGNESAPAASSSQ-----------Y---NGFQSHSLYGSDRARDLPSQQTNPDRFTQTQEPLITSNKPSLVNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAKDSEDKVLNESVASATPKDNQKACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPSLSLKRKHSNIQDIDCHS-----------------------------------------------------------EDVEEESGDGR-----KEAGPS----------RTGLG----------------SKRSRLAEVHNLSER----------------------RRRDRINEKMRALQ--ELIPNCNKVDKASMLDEAIEYLKSLQLQVQ---------------------IMSMASGY---------------------------------------------------------------------------------YLPPAVMFPPGMGHY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P--------------------AAAAAMAMGMGMPYAMGLPDLSRGGSSVNHGPQFQVSGMQQQPVAMGIPRVSGGGIFAGSSTIGNGSTRDLSGSKDQTTTNNNSNLK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIKRKQGSSDQFCGSS----------------------------------------------------------------------------------------------------   [524]
'gi|30681206|ref|NP 849626.1| PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription factor/ transcription regulat'    ------------------------------------------------------------------------------------------------------------------------------------------MPLFELFRLT-KAKLESAQDRNPSPPVDEVVELVWENGQISTQSQSSRSRNIPPPQANSSRAREIGNGSKTTMVDEIPMSVPSLMTGLSQDDDFVPWLNHHPSLDGYCSDFLRDVSSPVTVNEQESDMAVNQTAFPLFQRRKDGNESAPAASSSQ-----------Y---NGFQSHSLYGSDRARDLPSQQTNPDRFTQTQEPLITSNKPSLVNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAKDSEDKVLNESVASATPKDNQKACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPSLSLKRKHSNIQDIDCHS-----------------------------------------------------------EDVEEESGDGR-----KEAGPS----------RTGLG----------------SKRSRSAEVHNLSER----------------------RRRDRINEKMRALQ--ELIPNCNKVDKASMLDEAIEYLKSLQLQVQ---------------------IMSMASGY---------------------------------------------------------------------------------YLPPAVMFPPGMGHY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P--------------------AAAAAMAMGMGMPYAMGLPDLSRGGSSVNHGPQFQVSGMQQQPVAMGIPRVSGGGIFAGSSTIGNGSTRDLSGSKDQTTTNNNSNLK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIKRKQGSSDQFCGSS----------------------------------------------------------------------------------------------------   [524]
'gi|15240202|ref|NP 201512.1| ALC (ALCATRAZ); DNA binding / transcription factor [Arabidopsis thaliana] >gi|10177598|dbj|BAB1094'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGDSDVGDRLPPPSSSDELSSFLRQILSRTPTAQPS--------------------SPPKSTNVSSAETFFPSVSGGAVSSVGYGV------------------------------------------------------------------------------------------------------------SETGQDKYAFE-----HKRSGA----------KQRNS----------------LKRNIDAQFHNLSEK----------------------KRRSKINEKMKALQ--KLIPNSNKTDKASMLDEAIEYLKQLQLQVQ---------------------TLAVMNGL---------------------------------------------------------------------------------GLNPMRL--PQVPPP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THTRINETLEQDLNLETLLAAPHSLEPAKTSQGMCFSTATLL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [210]
'gi|51970054|dbj|BAD43719.1| putative bHLH transcription factor (bHLH073/ALCATRAZ) [Arabidopsis thaliana]'                           ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGDSDVGDRLPPPSSSDELSSFLRQILSRTPTAQPS--------------------SPPKSTNVSSAETFFPSVSGGAVSSVGYGV------------------------------------------------------------------------------------------------------------SETGQDKYAFE-----HKRSGA----------KQRNS----------------LKRSIDAQFHNLSEK----------------------KRRSKINEKMKALQ--KLIPNSNKTDKASMLDEAIEYLKQLQLQVQ---------------------TLAVMNGL---------------------------------------------------------------------------------GLNPMRL--PQVPPP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THTRINETLEQDLNLETLLAAPHSLEPAKTSQGMCFSTATLL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [210]
;
END;


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END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
	EXSET * UNTITLED  =  1-581 588-618 633-634 665-685 694-1577;
END;


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