#NEXUS [MacClade 4.08 registered to Tomoaki Nishiyama, National Institute for Basic Biology] BEGIN DATA; DIMENSIONS NTAX=48 NCHAR=829; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|15239134|ref|NP 199111.1| COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) [Arabidopsis thaliana] >gi|18056659|gb|AAL58103.1| CSN comp' -------------MDEALTN-ASAIGDQRQKIEQYKLILSSVLSSN--DLL---QAQRFIDH-------------------------------ILSDDVP----LVVSRQLLQSFAQE-------------------------L--GRLE-------------PETQKEIAQFTLTQIQ---PRVVSFEE-----------------------------Q---ALVI-REKLAGLYESEQEWSKAAQMLSGIDLDS-----GMRAVDDNFKLSKCIQIARLYLE-------DDDAVNAEAFINKASFLVSNS-----------------------------------------------QNEV--LNLQYKVCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYP---ILQKVYLERILRRPEIDAFSEELR---PHQK----------------------ASLPD-------------------------K-STVLDRAMIEHNLLSASKLYTNI---RFDELGTLLAID-------PRKAEKIAANMIGQDRMRGSIDQ------------------E--------EAVIHFEDD-----------------------------------------------VEELQ----------------------------QWDQQISGLCQALNDILDGMAKKGMSVPV---------------------------------------------------------------------------- [397] 'gi|5802627|gb|AAD51742.1| COP8 [Arabidopsis thaliana]' -------------MDEALTN-ASAIGDQRQKIEQYKLILSSVLSSN--DLL---QAQRFIDH-------------------------------ILSDDVP----LVVSRQLLQSFAQE-------------------------L--GRLE-------------PETQKEIAQFTLTQIQ---PRVVSFEE-----------------------------Q---ALVI-REKLAGLYESEQEWSKAAQMLSGIDLDS-----GMRAVDDNFKLSKCIQIARLYLE-------DDDAVNAEAFINKASFLVSNS-----------------------------------------------QNEV--LNLQYKVCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYP---ILQKVYLERILRRPEIDAFSEELR---PHQK----------------------ASLPD-------------------------K-STVLDRAVIEHNLLSASKLYTNI---RFDELGTLLAID-------PRKAEKIAANMIGQDRMRGSIDQ------------------E--------EAVIHFEDD-----------------------------------------------VEELQ----------------------------QWDQQISGLCQALNDILDGMAKKGMSVPV---------------------------------------------------------------------------- [397] 'gi|21592680|gb|AAM64629.1| COP8 (constitutive photomorphogenic) homolog [Arabidopsis thaliana]' -------------MDEALTN-ASAIGDQRQKIEQYKLILSSVLSSN--DLL---QAQRFIDH-------------------------------ILSDDVP----LVVSRQLLQSFAQE-------------------------L--GRLE-------------PETQKEIAQFTLTQIQ---PRVVSFEE-----------------------------Q---ALVI-REKLAGLYESEQEWSKAAQMLSGIDLDS-----GMRAVDDNFKLSKCIQIARLYLE-------DDDAVNAEAFINKASFLVSNS-----------------------------------------------QNEV--LNLQYKVCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRFLATLYKDERCSKLKIYP---ILQKVYLERILRRPEIDAFSEELR---PHQK----------------------ASLPD-------------------------K-STVLDRAMIEHNLLSASKLYTNI---RFDELGTLLAID-------PRKAEKIAANMIGQDRMRGSIDQ------------------E--------EAVIHFEDD-----------------------------------------------VEELQ----------------------------QWDQQISGLCQALNDILDGMAKKGMSVPV---------------------------------------------------------------------------- [397] 'gi|115451343|ref|NP 001049272.1| Os03g0197400 [Oryza sativa (japonica cultivar-group)]' -------------MDNALAS-AAAIADQRQKIEQYRHILSSVLSFSPPDIS---QAKRFLDH-------------------------------MVSDEVP----LVVSRQLLQTFAQE-------------------------L--GRLE-------------PEAQKEVAHYALTQIQ---PRVVSFEE-----------------------------Q---VVVI-REKLAELYESEQQWSKAAQMLSGIDLDS-----GIRMLDDTNKLSKCVQIARLYLE-------DDDSVNAEAFINKASFLVTNS-----------------------------------------------HQEL--LNLQYKVCYARILDLKRRFLEAALRYYDISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYP---ILQKVFLERILRKPEIEAFAEELR---PHQK----------------------ALLPD-------------------------K-STVLDRAMIEHNLLSASKLYTNI---SFDELGALLGID-------PRKAEKIASRMIYEDRMRGSIDQ------------------V--------EAVIHFEDD-----------------------------------------------TEELQ----------------------------QWDQQIAGLCQALNDILDSMSSKGMAIPV---------------------------------------------------------------------------- [399] 'gi|125542769|gb|EAY88908.1| hypothetical protein OsI 010141 [Oryza sativa (indica cultivar-group)]' -------------MDNALAS-AAAIADQRQKIEQYRHILSSVLSSSPPDIS---QAKRFLDHSNEHSIFAPLPVDSYGFCSGSGVTVGFGAAAVVSDEVP----LVVSRQLLQTFAQE-------------------------L--GRLE-------------PEAQKEVAHYALTQIQ---PRVVSFEE-----------------------------Q---VVVI-REKLAELYESEQQWSKAAQMLSGIDLDS-----GIRMLDDTNKLSKCVQIARLYLE-------DDDSVNAEAFINKASFLVTNS-----------------------------------------------HQEL--LNLQYKVCYARILDLKRRFLEAALRYYDISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYP---ILQKVFLERILRKPEIEAFAEELR---PHQK----------------------ALLPD-------------------------K-STVLDRAMIEHNLLSASKLYTNI---SFDELGALLGID-------PRKAEKIASRMIYEDRMRGSIDQ------------------V--------EAVIHFEDD-----------------------------------------------TEELQ----------------------------QWDQQIAGLCQALNDILDSMSSKGMAIPVILRSSPDRSGFSVSDCLGGTVRQTIARAGRLQTWSRALILLEPLEARYSDPV------------------------ [482] 'gi|125585269|gb|EAZ25933.1| hypothetical protein OsJ 009416 [Oryza sativa (japonica cultivar-group)]' -------------MDNALAS-AAAIADQRQKIEQYRHILSSVLSFSPPDIS---QAKRFLDHSNEPSIFAPLPVDSYGFCSGSGVTVGFGAAAVVSDEVP----LVVSRQLLQTFAQE-------------------------L--GRLE-------------PEAQKEVAHYALTQIQ---PRVVSFEE-----------------------------Q---VVVI-REKLAELYESEQQWSKAAQMLSGIDLDS-----GIRMLDDTNKLSKCVQIARLYLE-------DDDSVNAEAFINKASFLVTNS-----------------------------------------------HQEL--LNLQYKVCYARILDLKRRFLEAALRYYDISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYP---ILQKVFLERILRKPEIEAFAEELR---PHQK----------------------ALLPD-------------------------K-STVLDRAMIEHNLLSASKLYTNI---SFDELGALLGID-------PRKAEKIASRMIYEDRMRGSIDQ------------------V--------EAVIHFEDD-----------------------------------------------TEELQ----------------------------QWDQQIAGLCQALNDILDSMSSKGMAIPVILRSSPDRSGFSVSDCLGGTVRQTIARAGRLQTWSRALILLEPLEARYSDPV------------------------ [482] 'gi|33324486|gb|AAQ07984.1| COP8-like protein [Lilium longiflorum]' -------------MESALAS-AAAITDQRQKIEQYKSILASILASPTADVP---QAKRFIDH-------------------------------MVSDDVP----LVVPRQILQMFAQE-------------------------M--GRLE-------------ADAQREIALYALAQIQ---SRVVSFEE-----------------------------Q---VLII-REKLAELYESEEQWSKAAQMLSGIDLDS-----GNRTIDEAYKLSKCVQIARLYLE-------DDDAINAEAFINKASFLVSNS-----------------------------------------------QQEV--LNLQYKVCYARILDLKRKFLEAALRYYDISQIEKRQIGDEEIDEDALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKVYP---ILQKVYLERILRKPEIDAFAEELK---AHQK----------------------ALLPD-------------------------N-STVLDRAMIEHNLLSASKLYTNI---SFEELGTLLGIA-------PQKPEKIAPRMFLEDRMKGSIDQ------------------V--------EAFIHFEDD-----------------------------------------------PEELQ----------------------------QWDHQIMGLCQSLNEILDSMTRKGISIPV---------------------------------------------------------------------------- [399] lcl|Smo_COP8_18_2_unnamed_protein_product ----------MGDIRSALQV-AAGIGDQKQKVDQYKAILSTIIATN--HVE---HAMAFVNH-------------------------------MVSDEVP----LVISRQVLQTFAQD-------------------------L--GKLE-------------AEAHKQIAQYALAQIQ---PRVVSFEE-----------------------------Q---VCLI-RERLAELYEIEEEWTKSAQMLSGIDLDT-----GIRAGDESYKLTKCVKIALLYLE-------DDDATNAEVYIKKASFMVNGC-----------------------------------------------KDEA--VILQYKVCYARILDSKRKFLEAALRYYEMSQLEKREIGGRIVDEEELQQALTAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYP---ILQKVYLERILRKPEVDAFAEELK---PHQK----------------------ALLPD-------------------------S-STVLDRAMIEHNLLSASKLYTNI---SFEELGALLGIA-------PDKAEKIAARMISEDRMRGSIDQ------------------V--------EAVIHFDND-----------------------------------------------IEELQ----------------------------QWDQQIVSVCQSLNDVLDSMMKKGIPVAV---------------------------------------------------------------------------- [400] lcl|Smo_COP8_27_3_unnamed_protein_product ----------MGDIRSALQV-AAGIGDQKQKVDQYKAILSTIIATN--HVE---HAMAFVNH-------------------------------MVSDEVP----LVISRQVLQTFAQD-------------------------L--GKLE-------------AEAHKQIAQYALAQIQ---PRVVSFEE-----------------------------Q---VCLI-RERLAELYEIEEEWTKSAQMLSGIDLDT-----GIRAGDESYKLTKCVKIALLYLE-------DDDATNAEVYIKKASFMVNGC-----------------------------------------------KDEA--VILQYKVCYARILDSKRKFLEAALRYYEMSQLEKREIGGRIVDEEELQQALTAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYP---ILQKVYLERILRKPEVDAFAEELK---PHQK----------------------ALLPD-------------------------S-STVLDRAMIEHNLLSASKLYTNISVSSFEELGALLGIA-------PDKAEKIAARMISEDRMRGSIDQVHVKQTPSCVSNSCPILKV--------EAVIHFDND-----------------------------------------------IEELQ----------------------------QWDQQIVSVCQSLNDVLDSMMKKGIPVAV---------------------------------------------------------------------------- [421] lcl|Ppa_COP8_2_2_unnamed_protein_product ---------MASDIQGALQN-AAGIADQKQKIDQYKILLSSIMCNN--NVA---HARAFIDH-------------------------------MVTDEVP----LVASRLLLQIFAQE-------------------------L--NKLE-------------PEAHKEIALYALAQIQ---PRMVSFEE-----------------------------Q---VSII-REGLAEMYENEEQWSKAAQMLSGIDLES-----GQRMLDDAYKLEKCVKIALLYLESSIVIVQDDDAINAEIFIKKASFLVNNC-----------------------------------------------KDEA--LNLQYKVCYARILDSKRKFLEAALRYYELSQLEKREISGRRVDEDELQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYS---ILQKVYLERILRKPEVDAFAEELK---PHQK----------------------ALLPD-------------------------N-STVLDRAMIEHNLLSASKLYTNI---SLENGFGW-------------QAEKIAARMISEDRMRGSIDQ------------------V--------EGVIHFEND-----------------------------------------------IEELQ----------------------------QWDHQIVSICQALNDVLDSMVKKSVAVAV---------------------------------------------------------------------------- [402] lcl|10182_Cre_unnamed_protein_product -------M-----AQQLLAP-ITQIADQRQKTEAYKGALQQILDSAQVD-----ACKEFVSH-------------------------------MLSDDVP----LVISRQLLLLYAQG-------------------------V--AKLP-------------SATHVAVATAG---------------------------------------------------------------RGERWN---WVLSGIDLEG-----GGRAVEPGYRLRQNIKIAMLYLE-------------------------------------------------------------------------------------------------------------------------------------------------------------DERSSRLEVYP---FLQKVYLERILDRPEVEAFAKGLK---PHQ-------------------------------------------------------------------------------------LGGLLGVS-------AEAAEAIAADMVAEGRMAGSIDQ------------------V--------E-------------------------------------------------------VEALL----------------------------RWDESIRAACGKVVDLLDSVAALGLAGARCVRGVWGE-------------------------------------------------------------------- [233] 'gi|55236056|gb|EAA13836.2| ENSANGP00000015673 [Anopheles gambiae str. PEST] >gi|58391888|ref|XP 318948.2| ENSANGP00000015673 [A' KIAM-AIS-TSVLRTQLVAL-TNSSGIHKEQVDKYRSLLDQILLNTGNELV-D-TLKLFIEA-------------------------------ILNEHVS----LVISRQLLSDVSTH-------------------------L--TKLP-------------DDISKSVAHFTLDKVQ---PRVISFEE-----------------------------Q---VACI-RQHLAQIYERNQNWKEAANVLGGIPLET-----GQKPYPLDYKLETYLKIARLYLE-------DEDPVQAEAFINRASILQADT-----------------------------------------------KDEK--LQILYKVCYARVLDYRRKFIEAAQRYNELSY-------RTIVDEGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYS---ILEKMYLDRIIRRSELQEFEALLQ---MHQK----------------------ASTLD-------------------------G-SSILDRAVFEHNLLSASKLYNNI---TFEELGALLEIP-------PPKAERIASQMITEGRMNGYIDQ------------------I--------DGVVHFETR------------------------------------------------EVLP----------------------------QWDKQIQGLCYQLNGLIEKIGAAEPDWMAKIM------------------------------------------------------------------------- [406] 'gi|66521456|ref|XP 623684.1| PREDICTED: similar to ENSANGP00000015673 [Apis mellifera]' M----VVT-AASVRQQLANL-AYCGGSHKDQAEKYRAILDSILLSSSEEAM-D-ALKIFIEA-------------------------------IVNEYVS----LVISRQVLTDVSNR-------------------------L--LLLP-------------DEVSMAISHYTLDKIQ---PRVISFEE-----------------------------Q---VASI-RQHLAKIYERNQNWREAANVLVGIPLET-----GQKQYTVDYKLETYLKIARLYLE-------DDDPVQAEAFINRASLLQAES-----------------------------------------------KNEQ--LQIYYKVCYARVLDYRRKFIEAAQRYNELSY-------RSIIHEDERMTALRNALICTVLASAGQQRSRMLATLFKDERCQQLPAYS---ILEKMYLDRIIRRSELQEFEALLQ---PHQK----------------------ASTIDGL-----------------------G-STILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------PTKAEKIASQMITEGRMNGYIDQ------------------I--------DSIVHFETR------------------------------------------------ETLP----------------------------TWDKQIQSLCYQVNQIIEKIAQTEPEWIAKAMEDQMAI-------------------------------------------FYLKHVM----------------- [418] 'gi|51259458|gb|AAH79384.1| COP9 signalosome subunit 4 [Rattus norvegicus] >gi|51948518|ref|NP 001004275.1| COP9 signalosome sub' -------M-AAAVRQDLAQL-MNSSGSHKDLAGKYRQILEKAIQLSGTEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DSTAKEVYHFTLEKVQ---PRVISFEE-----------------------------Q---VASI-RQRLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [406] 'gi|12845070|dbj|BAB26607.1| unnamed protein product [Mus musculus] >gi|55976221|sp|O88544|CSN4 MOUSE COP9 signalosome complex s' -------M-AAAVRQDLAQL-MNSSGSHKDLAGKYRQILEKAIQLSGTEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DSTAKEVYHFTLEKIQ---PRVISFEE-----------------------------Q---VASI-RQHLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [406] 'gi|74267826|gb|AAI03018.1| COP9 constitutive photomorphogenic homolog subunit 4 [Bos taurus] >gi|77736333|ref|NP 001029866.1| C' -------M-AAAVRQDLAQL-MNSSGSHKDLAGKYRQILEKAIQLSGAEQL-E-ALKAFVES-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DSTAKEIYHFTLEKIQ---PRVISFEE-----------------------------Q---VASI-RQHLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [406] 'gi|7022321|dbj|BAA91555.1| unnamed protein product [Homo sapiens]' ---------------------MNSSGSHKDLAGKYRQILEKAIQLSGAEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DSTAKEIYHFTLEKIQ---PRVVSFEE-----------------------------Q---VASI-RQHLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [394] 'gi|13279173|gb|AAH04302.1| COP9 signalosome subunit 4 [Homo sapiens] >gi|57109092|ref|XP 535632.1| PREDICTED: similar to COP9 s' -------M-AAAVRQDLAQL-MNSSGSHKDLAGKYRQILEKAIQLSGAEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DSTAKEIYHFTLEKIQ---PRVISFEE-----------------------------Q---VASI-RQHLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [406] 'gi|5410300|gb|AAD43021.1| COP9 complex subunit 4 [Homo sapiens]' ---------MAAVRQDLAQL-MNSSGSHKDLAGKYRQILEKAIQLSGAEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DSTAKEIYHFTLEKIQ---PRVISFEE-----------------------------Q---VASI-RQHLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [405] 'gi|62897917|dbj|BAD96898.1| COP9 signalosome subunit 4 variant [Homo sapiens]' -------M-AAAVRQDLAQL-MNSSGSHKDLAGKYRQILEKAIQLSGAEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DSTAKEIYHFTLEKIQ---PRVISFEE-----------------------------Q---VASI-RQHLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESKRLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [406] 'gi|55732124|emb|CAH92768.1| hypothetical protein [Pongo pygmaeus]' -------M-AAAVRQDLAQL-MNSSGSHKDLAGKYRQILEKAIQLSGAEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DSTAKEIYHFTLEKIQ---PRVISFEE-----------------------------Q---VASV-RQHLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [406] 'gi|74204185|dbj|BAE39855.1| unnamed protein product [Mus musculus]' -------M-AAAVRQDLAQL-MNSSGSHKDLAGKYRQILEKAIQLSGTEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DSTAKEVYHFTLEKIQ---PRVISFEE-----------------------------Q---VASI-RQHLASIYEKEEDWRNAAEVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [406] 'gi|57530095|ref|NP 001006447.1| COP9 constitutive photomorphogenic homolog subunit 4 [Gallus gallus] >gi|53133328|emb|CAG31993.' MVG--EKM-AAAVRQELAQL-MNSSGSHKDLAGKYRQILEKAIQLSGAQQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PSLP-------------DSTAKEIYHFTLEKIQ---PRVISFEE-----------------------------Q---VASI-RQHLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KSIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ------------------------------------------------------------------- [411] 'gi|41351437|gb|AAH65617.1| Hypothetical protein LOC325592 [Danio rerio] >gi|45387547|ref|NP 991119.1| hypothetical protein LOC3' -------M-ASGVRQELAQL-MNSSGSHKDLAGKYRQILEKALQFTDAEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCAH-------------------------L--PNLP-------------DDIAKVVCHFTLEKIQ---PRVISFEE-----------------------------Q---VASI-RQHLATIYEKQEDWRNAAQVLVGIPLET-----GQKQYNVDYKLDTYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KSIVHETERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------PAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EPLP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAIEAQMSQ------------------------------------------------------------------- [406] 'gi|54635826|gb|EAL25229.1| GA21282-PA [Drosophila pseudoobscura]' -----GIS-TAILRNQLMSL-INFTGTHKDQADKYRQLLRTVLSNTGQELI-D-ALRLFVEA-------------------------------IVNEHVS----LVISRQILNDVGVE-------------------------L--SKLP-------------DDLSKQLSHFTLEKVH---PRVISFEE-----------------------------Q---VAGI-RFHLANIYERNQQWRAAATVLVGIPLET-----GQKQYSVECKLGTYLKIARLYLE-------DNDSVQAELFINRASLLQAET-----------------------------------------------NSEE--LQVLYKVCYARVLDYRRKFIEAAQRYNELSY-------RKIVDQGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYG---ILEKMYLERIIRRSELQEFEALLQ---EHQK----------------------AATPD-------------------------G-SSILDRAVFEHNLLSASKLYNNI---TFEELGALLDIP-------AAKAEKIASQMITEGRMNGHIDQ------------------I--------SGIVHFENR------------------------------------------------ELLP----------------------------QWDRQIQSLCYQVNSIIEKIGVAEPGWLDKLN------------------------------------------------------------------------- [402] 'gi|62859695|ref|NP 001016715.1| hypothetical protein LOC549469 [Xenopus tropicalis] >gi|89267863|emb|CAJ82695.1| COP9 constitut' -------M-AASVRQDLTQL-MNSSGSHKDLAGKYRQILDKALQLPGPEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCTH-------------------------L--PSLP-------------DGIAKEIYHFTLEKIQ---PRVISFEE-----------------------------Q---VASV-RQHLASIYEKEEDWRNAAQVLVGIPLET-----GQKQYNVDYKLETYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KTIVHESERMEALKHALHCTILASAGQQRSRMLATLFKDERCQQLSAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTGD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------AAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EALP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPDWTAQAMEAQMAQ------------------------------------------------------------------- [406] 'gi|34193955|gb|AAH56527.1| Zgc:77137 protein [Danio rerio]' ---------ASGVRQELAQL-MNSSGSHKDLAGKYRQILEKALQFTDAEQL-E-ALKAFVEA-------------------------------MVNENVS----LVISRQLLTDFCAH-------------------------L--PNLP-------------DDIAKVVCHFTLEKIQ---PRVISFEE-----------------------------Q---VASI-RQHLATIYEKQEDWRNAAQVLVGIPLET-----GQKQYNVDYKLDTYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------TNEQ--LQIHYKVCYARVLDYRRKFIEAAQRYNELSY-------KSIVHETERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTAD-------------------------GSSSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------PAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EPLP----------------------------TWDKQIQSLCFQVNNLLEKISQTAPEWTAQAIEAQMSQ------------------------------------------------------------------- [406] 'gi|66800025|ref|XP 628938.1| hypothetical protein DDB0229823 [Dictyostelium discoideum] >gi|83776748|gb|ABC46696.1| COP9 signal' -------M-DVNNLKQILEE-TSALSDHKTKTEKYKSILQQLVESKQVA-----PLKVFITH-------------------------------LTDESTP----LVISRTILLSFTSS-------------------------H--KTLP-------------EDIQMELGIFVLDRIQ---NRVVAFEE-----------------------------Q---VSEI-RYNLAKLYERQENWRESARCLIAIPLDS-----SQRVISPEYKVKIYVKIARLFLE-------EEESGQAETYINRASDSLHLV-----------------------------------------------KNQK--LILAHKTCFARIMDYKRMFLKASLRYYDLSQCLP--------KDTERMHALSCAIVCAILDKAGPQRSRTLATLYKDERSQQLGVYT---FLEKMFLERILKKTEVKKFAEQLK---PHQM----------------------ALLSD-------------------------G-NTVLDRAVIEHNLLSASKLYNNI---TFDELGSLLEIQ-------AEKAEKVASKMVCEERLIGSIDQ------------------I--------ERLIQFENV-----------------------------------------------GDSLT----------------------------QWDKKIEGLCIHMNNIIESISK-YPEFIV---------------------------------------------------------------------------- [393] 'gi|4732107|gb|AAD28607.1| COP9 signalosome subunit 4 CSN4 [Drosophila melanogaster]' MAANYGIS-TAALRSQQMGL-INFTGTHKDQADKYRQLLKTVLTNTGQELI-D-GLRLFVEA-------------------------------IVNEHVS----LVISRQILNDVGSE-------------------------L--SKLP-------------DDLSKMLSHFTLEKVN---PRVISFEE-----------------------------Q---VAGI-RFHLANIYERNQQWRDAATVLVGIPLET-----GQKQYSVECKLGTYLKIARLYLE-------DNDSVQAELFINRASLLQAET-----------------------------------------------NSEE--LQVLYKVCYARVLDYRRKFIEAAQRYNELSY-------RKIVDQGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYG---ILEKMYLERIIRRSELQEFEALLQ---DHQK----------------------AATSD-------------------------G-SSILDRAVFEHNLLSASKLYNNI---TFEELGALLDIP-------AVKAEKIASQMITEGRMNGHIDQ------------------I--------SAIVHFENR------------------------------------------------ELLP----------------------------QWDRQIQSLCYQVNSIIEKISVAEPDWMDNLN------------------------------------------------------------------------- [407] 'gi|17137696|ref|NP 477444.1| COP9 complex homolog subunit 4 CG8725-PA [Drosophila melanogaster] >gi|28557667|gb|AAO45239.1| GH0' MAANYGIS-TAALRSQLMGL-INFTGTHKDQADKYRQLLKTVLTNTGQELI-D-GLRLFVEA-------------------------------IVNEHVS----LVISRQILNDVGSE-------------------------L--SKLP-------------DDLSKMLSHFTLEKVN---PRVISFEE-----------------------------Q---VAGI-RFHLANIYERNQQWRDAATVLVGIPLET-----GQKQYSVECKLGTYLKIARLYLE-------DNDSVQAELFINRASLLQAET-----------------------------------------------NSEE--LQVLYKVCYARVLDYRRKFIEAAQRYNELSY-------RKIVDQGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYG---ILEKMYLERIIRRSELQEFEALLQ---DHQK----------------------AATSD-------------------------G-SSILDRAVFEHNLLSASKLYNNI---TFEELGALLDIP-------AVKAEKIASQMITEGRMNGHIDQ------------------I--------SAIVHFENR------------------------------------------------ELLP----------------------------QWDRQIQSLCYQVNSIIEKISVAEPDWMDNLN------------------------------------------------------------------------- [407] 'gi|72139870|ref|XP 791860.1| PREDICTED: similar to COP9 signalosome complex subunit 4 (Signalosome subunit 4) (SGN4) (JAB1-cont' -------M-AASMKQQLSTL-LNAGGAPKDLTEKYRKILNDILQLGEDDLV-N-GLQFFIET-------------------------------MVKESVS----LVISRQLLLEVCNQ-------------------------L--PQLP-------------DPVSQRVSHFLLEKVH---PRAVSFEE-----------------------------Q---MGSV-RQHLSSIYEKEQNWREAARILVGIPLET-----GQKQYQVDYKLETYLKIARLYLE-------DDDPVEAEVYIKRASMLQAES-----------------------------------------------KSEQ--LHIHYKVCYARMLDYKRKFIEAAQRYNELSY-------RTIIADEERMESLRHALHCTILASAGQQRSRMLATLFKDERCQQLPSYG---ILEKMYLDRIIRGDQLQEFASRLQ---EHQK----------------------ATTAD-------------------------G-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------PPKAEKIASQMISEGRMNGYIDQ------------------I--------DSIVHFEST------------------------------------------------DILP----------------------------QWDKQIQSLCFQVNNIIEKIVGAVPEWAASISDNQMQ-------------------------------------------------------------------- [405] 'gi|1764018|emb|CAB06052.1| COS41.8 [Ciona intestinalis]' -------M-AVNVKADLTVLGQAASSSHKDLTERYQQILERCFAMEDQERI-P-ALKAFVDA-------------------------------MMNENVS----QMRSRQLLTSFCGQ-------------------------L--TQMG-------------NTACKEVSLFALERIQ---PRVISFEE-----------------------------Q---VSQI-RQHLASIFEEEENWRDAALMLVGIPVES-----GQKQYSLDYKLKTYLTIARLYLE-------DEDPVQAEMYINRASLLQNET-----------------------------------------------ADEQ--LQIHYKVCYARVLDYRRKFLEAAQRYNELSY-------KSAIHETEQTKALEKALNCAILAPAGQQRSRMLATLFKDERCQLLPSFG---ILEKMFLDRIIKSDEMEEFARQLM---PHQK----------------------AITAD-------------------------G-SNILHRAVTEHNLLSASKLYNNI---RFTELGALLEIP-------HQMAEKVASQMICESRMKGHIDQ------------------I--------DGIVFFERR------------------------------------------------ETLP----------------------------TWDVQIQSLCLEVNSIVDKISAVHQDWVNRKMELLMSN-------------------------------------------TN---------------------- [409] 'gi|47228460|emb|CAG05280.1| unnamed protein product [Tetraodon nigroviridis]' -------M-MS---------------------------------------------YCFFSP-------------------------------VVNENVS----LVISRQLLTDFCTH-------------------------L--PNLP-------------DATAKAVYHFTLEKIQ---PRVISFEEQVNAFTLISSTASISVFCFNSATNPFICPQ---VASI-RQHLATIYEKEGDWRNAAQVLVGIPLET-----GQKQYNVDYKLDTYLKIARLYLE-------DDDPVQAEAYINRASLLQNES-----------------------------------------------SNEQ--LQIHYKVCYARVLDFRRKFIEAAQRYNELSY-------KTIVHESERLEALKHALNCTILASAGQQRSRMLATLFKDERCQQLATYG---ILEKMYLDRIIRGNQLQEFAAMLM---PHQK----------------------ATTADGEPEEPTGNSGWSLPETVPVCSL-AG-SSILDRAVIEHNLLSASKLYNNI---TFEELGALLEIP-------PAKAEKIASQMITEGRMNGFIDQ------------------I--------DGIVHFETR------------------------------------------------EPLP----------------------------TWDKQIQSLCFQVNNLLEKIRQAAPDWAAQAMETQMTQ------------------------------------------------------------------- [417] 'gi|83765495|dbj|BAE55638.1| unnamed protein product [Aspergillus oryzae]' -------M-ASQKITSALAE-IQSSANPQNKLQLYNDLLSDVASTSSGDQL-SQDLTFYLDS-------------------------------ILSEDIS----IVAARPLLDSFIDV-------------------------L--RKLN-------------PETQIKVGQHAITLLQ---SRSTSVEE-----------------------------Q---DAQI-RELLADAYESEEEYIAAARTLQGIHIDS-----SQRLVSDAAKVRLWIRIVRLYLE-------EDDTTSAEAVLNRIKNLPSKI-----------------------------------------------EDHE--LQLHFKLSQARILDARRKFLDASQEYFNVSL-------AAGVDESDRLQALAAAIRCAVLGPAGPQRSRILATLYKDDRATSVEEFG---ILEKMFLDRLLTPAEVTAFSQRLA---PHQL----------------------AQTAD-------------------------G-TTVLDKAVVEHNLVAASKLYENI---TTDALGAILGLEASGDLTAGEKAEAYAARMVEQGRLSGSIDQ------------------I--------DGIIYFESS-T-------------------------------AG-----------TGRHIR----------------------------QWDAGVQGLAEDVERVATSITDAFPVCTDTIASTV---------------------------------------------------------------------- [416] 'gi|70983650|ref|XP 747352.1| COP9 signalosome subunit 4 [Aspergillus fumigatus Af293] >gi|66844978|gb|EAL85314.1| COP9 signalos' -------M-ASQRIASALAE-IESSTNPQTKLQQYNNLLSEITSTSSEHEL-GQDLIYYLDS-------------------------------VLSEEIS----IVAARPLLDSFIAV-------------------------L--RKLT-------------PETQIKVGQHAVTLLQ---SRSSSVEE-----------------------------Q---DSQI-REILADAYESQEEYAAAARALQGIHIDS-----SQRLVSDAAKVRLWIRIVRLYLE-------EDDTTSAEGFLNKIKNLPSKI-----------------------------------------------EDHE--LKLHFKLSQARILDARRRFLDASQEYFNVSL-------AGGVDESDRLQALAAAIRCAVLAPAGPQRSRILATLYKDDRATSVEEFG---ILEKMFLDRLLDPAEIAAFSERLA---PHQL----------------------ARTAD-------------------------G-TTVLDKAVVEHNLVAASKLYENI---TTDALGAILGLKESGDMTAGEKAEAYAARMVEQGRLNGSIDQ------------------I--------AGVIYFDSS-E-------------------------------GG-------SATATGRHIR----------------------------QWDAGVQGLAEDVERVAASIRDAFPVCAHSV---W---------------------------------------------------------------------- [417] 'gi|67522164|ref|XP 659143.1| hypothetical protein AN1539.2 [Aspergillus nidulans FGSC A4] >gi|21553897|gb|AAK14055.2| COP9 sign' -------M-PSQKIISALAE-IESSASPQNKLQLYNDLLSETVSASPEPQL-ADDLIYYLDS-------------------------------VLSEDLS----IVAARPILDSFIYT-------------------------L--RKLS-------------SETQIKVAQHAVNLLQ---SRSASVEE-----------------------------Q---DAQI-REILADAYEAEEEYIAAARALQGIHIDS-----SQRLVSDSAKVKLWIRIVRLYLE-------EDDTTSAEAFLNRIKNLPSKI-----------------------------------------------EDHE--LKLHFRLSQARIQDARRRFLDASQEYFAVSL-------AAGVDESDRLQALAAAIRCAVLAPAGPQRSRTLATLYKDDRATSVEEFG---ILEKMFLDRLLTPEEVSAFAQRLA---PHQL----------------------AQTAD-------------------------G-TTVLDKAVVEHNLVAASKLYENI---KTDALGAILGLQASGDLTAGEKAEAYAARMVEQGRLSGSIDQ------------------I--------DGIIYFESN-T-------------------------------TA-----------TGRHIR----------------------------QWDAGVQGLSEGVERVATNIAEGHLV--------R---------------------------------------------------------------------- [408] 'gi|46107480|ref|XP 380799.1| hypothetical protein FG00623.1 [Gibberella zeae PH-1] >gi|42545086|gb|EAA67929.1| hypothetical pro' -------MTPSPEVASAISK-AESAPG--EKGPVYEQFIPTIKNLSPLPTA-D-DLNAIVDS-------------------------------FFGQALG----VVATRTILSSFIAA-------------------------L--REIEN------------QDLWIEVGNRTLDTIAAQ-PSSSSFVD-----------------------------A---GATL-RELIATAHEKNEDFLDAAKTLADIPLDS-----SQRKITDEEKARTWVRIVRNYLE-------VDDSTAAEMYINKLKNIMHSV-----------------------------------------------ADQE--LNLHFKLSQARILDAQRDFLSASQRYHEISF-------FPAIDEDDRVHTLSMAIKCAVLAPAGPMRNRTLGRLYKDERSAQLEEFG---ILEKMFLDRLLSPEEVDKFAEGLQ---PHQL----------------------ATTSD-------------------------G-STVLAKAVVEHNLLGASRLYNNI---RFEALGSLLGLD-------ADKAEETTARMIEQGRLVGRMDQ------------------L--------DGIVYFEGG-E-------------------------------ASGEKGSGRAEVTVGKEMR----------------------------TWDSNVQSLAEEVENVTNALQKEFPEFVAANLV-V---------------------------------------------------------------------- [420] 'gi|78214785|gb|ABB36582.1| CSN-4 [Neurospora crassa] >gi|85089839|ref|XP 958134.1| hypothetical protein [Neurospora crassa N150' -------M-VSSEVRDLLAQ-VPNWSQ-ADRPAAFRTIITTITSSPDPSHF-AADLKAVTDA-------------------------------IFLESLG----VVATRALVIDLIDA-------------------------L--KSLASGGPSADSINSTTSSIWLDVGKAIQQHIQSNPTLATSLVD-----------------------------Q---TATIYEELLAAAHESQNSFTDAAKTLAAIPLDS-----SQRRVTDKYKADLWIRIIRNYLE-------DDDATSAETYLNKLKNIIHNV-----------------------------------------------ADDNPVLNLHFKLSAARIQDSNRQFLAASQSYYEISL-------SPAIAEEERLHTLSMAIKCAVLAPAGPPRSRVLARLYKDERSASLEEFG---ILEKMFLDRLLARAEVEKFAQGLA---PHQL----------------------ATTSD-------------------------G-STVLAKAMVEHNLLAVSRLYRNI---GFDALGSWLGLD------SGNKAEEITARMIEQGRLAGSIDQ------------------I--------DRIIYFESGLE-------------------------------ASGEKGSGRAEVPVGKEMR----------------------------RQDGMVQALAEDLERITDDLLVEFPQLVPAGVPGN---------------------------------------------------------------------- [440] 'gi|39975035|ref|XP 368908.1| hypothetical protein MG00336.4 [Magnaporthe grisea 70-15]' -------M-ASDSIKAALEQ-A-SQSN--DAAAALEKLLVDFKSLSSPATA-TADLKRVIDA-------------------------------VLNAQLG----VVSTLPILSAFVNA-------------------------V--RQLEN------------DDLWIEVGNYALQRIGENTQTASSFLE-----------------------------Q---SNAL-RELIATAHEHNEDWTDAAKTLAEIPLDS-----SQRRATEEEMVRVWIRIVRNYLE-------ADDSTTAGSYLNKVKNVIFKV-----------------------------------------------QDRD--LNLHFRLSQARINDSQREFLAASHAYHEISL-------SPQIAEEERLHTLSMAIKCAVLAPAGPLRSRALGRLYRDERSAGQEEYG---ILEKMFLDRLLSPGEVDKFAQGLS---PHQL----------------------ATTAD-------------------------G-STVLAKAVVEHNLLGASRLYDNI---GFDELGELLGLD-------GAKAEETTARMIEQGRLVGRIDQ------------------V--------DRVIWFESG-E-------------------------------ASGVKGSGRAKVVVGKEIR----------------------------RWDANVQDLAEEVEHVTSLLQKEYPDFVAANLV-V---------------------------------------------------------------------- [420] 'gi|71004658|ref|XP 756995.1| hypothetical protein UM00848.1 [Ustilago maydis 521] >gi|46096689|gb|EAK81922.1| hypothetical prot' -------M-AASLESFAAQLEHAATQPNSSRLAFYESLISDLLQQASNKLN-RNDLLEATSA--------------------------YLRHAVFSEQNSTGGGLVIGRQALTALEHHAGRIAEQYETQRRDKEIMQDDQDESV--PAIAD------------RDTRRQLLENALEQLQ---PRVLSFEE-----------------------------Q---ASNL-RMQLASLLEAEEDWNEAARVLLAIPLDS-----GHRNISDHLKLSIYVRIVRLLLE-------GDDPVAADMYLKRASMIIHNVPGALPSQYQQQQQQQLQEEQHVAASTTAGHGDDAHEASAASGSKFKLEDPK-VLGLQYRLSQARIYDSQRRFAEAAIRYHELSY-------VAEIDEDDRAMMLSAAVTAAILSPAGPQRARTLAMLMRDERTPSLPQYT---ILSKVFLDRVIRPDEIASFEKLLS---PHQI----------------------AKLAPSSAPGATSTSSTTMAAGKGSKSVRHAPSTVLDRAMIEHNVLSASRLYDNI---TLAGLGALVDLS-------PAGAEDIARKMIMQGRLKGWIDQ------------------VGDANTQGGDGVLFFVDQYRRGEGETTAGGLEATKVDSSGGDGSGGGRGAAEGDVDGGACAGDVDTKWTR----------------------------RWDQQIAQVTGALEDVCQRNQSDLYSLGVGNDRRRCCL-------------------------------------------SPSSLACNAMQCTASPLFVLRLRL [597] 'gi|39583760|emb|CAE63864.1| Hypothetical protein CBG08426 [Caenorhabditis briggsae]' -------MSSEIERSVEVSDIFALDTDHKAQYEALAKLCNKYLPVNANGQVDTNEIIKIIDT------------------------------VIALETGS----MVVSRQFVSLITDR-------------------------LDNPNLE-------------PECIKLISEGILSIIK---TRTISYED-----------------------------Q---VCIL-RLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQATKEGAKAALCIRITKLLLD-------CGEIDEAEQYVNRTSILMVEVA----------------------------------------------PNPE--IVIEHKALQARVCDAKRRFVESAQRYYELSV-------TEQLPMSDRMTALGKAIVCVLLAKPGPQRSRLLTIIFKDERAPNCPSFE---IIAKMYLTKVIHKDELEEFESQLQ---PHQ-----------------------KVDEH-------------------------G-ESILKGVIQEHNITAVSQLHTNI---KFKTLGMLLGVD-------EESAEAMSGEMIASERLHGYIDQ------------------T--------NGVLHFEDA------------------------------------------------NPMR----------------------------VWDNQILSTLEQVNKVSDMIVARHPDFATFLS------------------------------------------------------------------------- [412] 'gi|7332116|gb|AAF60803.1| Cop-9 signalosome subunit protein 4 [Caenorhabditis elegans] >gi|17543668|ref|NP 500034.1| COP-9 SigN' -------MSGEIERSQEVAVIFAQDTDHKAQYEALAKLCNKYLPQNAMGRVDTAEIIKIIDT------------------------------VIALETGS----MVVSRQFVSLITER-------------------------LDNQHLE-------------SECVKAISEGILAIIK---TRTISYED-----------------------------Q---VCIL-RLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQAAKEGAKAQLCIRITKLLLD-------CSEIDEAEQYVNRTSILMVDLG----------------------------------------------ANPD--IQIEHKALQARVSDAKRRFVEAAQRYYELSA-------TEQLPNSDKLTALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFE---LIAKMYLTKVIHKDELEEFEHQLQ---DHQ-----------------------KADEH-------------------------G-ESILKGVIQEHNITAISQLYINI---SFKTLGQLLGVD-------TEAAESMAGEMISSERLHGYIDQ------------------T--------NGILHFEDS------------------------------------------------NPMR----------------------------VWDSQILSTLEQINKVSDMIVARHSEFAEFLT------------------------------------------------------------------------- [412] 'gi|56754807|gb|AAW25586.1| SJCHGC02821 protein [Schistosoma japonicum]' ---------MSENLSSTLSE-ITACKSPKEATEKFSNLLKSLPQSS--DCL-LADITTIVNT-------------------------------ISQDMVT----VIAARKFCDELISF-------------------------V--NQVSD------------NSLAISALQILLSRMQ---SRNIAFES-----------------------------Q---LVEL-RDSLSKRLEAVGNLREAAAVLSDIPLES-----GQRVYGVNYKLDIYLRIAEYCLK-------IHEIQEAEAFVNRASLLQPEC-----------------------------------------------QNQQ--LLVRYKIAYAHLLDLKQKFLEAGQRYAELSV------RFPWLDDSERLAFIERALAAALLSSAGHQRSRLLATLYKDERCQTFDAYP---ILENMYMGRLINRSSLSSLEPLLNKYYPHLLQSPVQDVSNTTTTGDQSERLSSASSSS-------------------------V-QELLERALNEHNMLAASLIYNNI---SLVNLGLLLEIS-------ASEAESIAAQMISEGRLIGKLDQ------------------I--------DGVIHFENR-----------------------------------------------DPGVS----------------------------SWSMHIQSLCTTVNRIVEDIEAAHPDWVHSHLNSRMTI-------------------------------------------DPPV-------------------- [436] 'gi|56755263|gb|AAW25811.1| unknown [Schistosoma japonicum]' ---------MSENLSSTLSE-ITACKSPKEATEKFSNLLKSLPQSS--DCL-LADITTIVNT-------------------------------ISQDMVT----VIAARKFCDELISF-------------------------V--NQVSD------------NSLAISALQILLSRMQ---SRNIAFES-----------------------------QNWLLVEL-RDSLSKRLEAVGNLREAAAVLSDIPLES-----GQRVYGVNYKLDIYLRIAEYCLK-------IHEIQEAEAFVNRASLLQPEC-----------------------------------------------QNQQ--LLVRYKIAYAHLLDLKQKFLEAGQRYAD-------------------TVYKTGALAAALLSSAGHQRSRLLATLYKDERCQTFDAYP---ILENMYMGRLINRSSLSSLEPLLNKYYPHLLQSPVQDVSNTTTTGDQSERLSSASSSS-------------------------V-QELLERALNEHNMLAASLIYNNI---SLVNLGLLLEIS-------ASEAESIAAQMISEGRLIGKLDQ------------------I--------DGVIHFENR-----------------------------------------------DPGVS----------------------------SWSMHIQSLCTTVNRIVEDIEAAHPDWVHSHLNSRMTI-------------------------------------------DPPV-------------------- [426] 'gi|88181915|gb|EAQ89383.1| hypothetical protein CHGG 06002 [Chaetomium globosum CBS 148.51]' -------M-ASPQVAAALEE-A-GKSQ--DVTG-YLNILENTKSTPNPDSV-AADLTAFIDA-------------------------------VLTGNLG----LVNTRTLVTDFIAA-------------------------L--RALDN------------HDLWLQVGQHAIRTIPTT-ALSSSLLE-----------------------------Q---SAAL-RELVATAHEANEDFLDAAKMLSDIPLDS-----SQRRVGDAEKAAIWVRIVRNYLE-------VDDSTTAERYLNKLKNVMHDV-----------------------------------------------ADAE--LNLHFRA------------VGGAHP----GL-------EP---PDERLHTLAMAIKCAILAPAGPLRGRALAHLYKDDRSAGLEEHG---ILEKMFFDRLLSTAEVDKFAQGLA---PHQL----------------------AKTSD-------------------------G-STVLAKAVVEHNLLSASRLYSNI---GFDELGLLLGLD-------GEKAEDTTARMVEQGRLVGSIDQ------------------I--------DRIIWFEGG-D-------------------------------ASGEKGSGRAETAVGKEMR----------------------------RWDANVQALAEDVERLTDALQAEFPEFVAAQIA-V---------------------------------------------------------------------- [399] 'gi|50257199|gb|EAL19912.1| hypothetical protein CNBG0550 [Cryptococcus neoformans var. neoformans B-3501A]' -------M----DITAALHE-ASSQQNQKLRSQAYLSLLQSLLQPPLTSAS---PLIAFGTH------------------------------FTTSNTVI----IIVGRRILGAYLVALLAGTTVVQKGTAKVPLDEEGQADEAEWAALGKAAFGGEKG----EEVRRDVVEGVLAA-----GSSGWCDE-----------------------------Q---ITVL-RHLHSHLLMLEEDWEGAARALMPMQLEG-----GSRVVSDDEKLNVYMQIVRLFLE-------CGEWGQAQTYFTRASLLPRP------------------------------------------------TDKE--TRLSMRLSQAKLYDFANEFAKASVTYHEVSH-------DPSIDPSDRLIILSAAVTTSILAPSGPHRSRILATLNRDDRVHTELPAGLGTMLKKMLLEYIVKPEEMKEFEGALA---PHQR----------------------AVVEG-------------------------G-GTVLERAVREHNVGACAKVYDNI---SFSALGAILNLS-------PSSAETIAQRMIEQSRLRAWIDQ------------------P--------SQLIFFESR------------------------------------------------PQLDTDADAQGTAGGLGVEKEEKEVEKVGWGVRWDERIRGTSLRVEGIAEAILAKGLIDA----------------------------------------------------------------------------- [457] 'gi|57228405|gb|AAW44862.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] >gi|58270026|ref|XP 5' -------M----DITAALHE-ASSQQNQKLRSQAYLSLLQSLLQPPLTSAS---PLIAFGTH------------------------------FTTSNTVI----IIVGRRILGAYLVALLSGTTVVQKGTAKVPLDEEGQADEAEWAALGKAAFGGEKG----EEVRRDVVEGVLAA-----GSSGWCDE-----------------------------Q---ITVL-RHLHSHLLMLEEDWEGAARALMPMQLEG-----GSRVVSDDEKLNVYMQIVRLFLE-------CGEWGQAQTYFTRASLLPRP------------------------------------------------TDKE--TRLSMRLSQAKLYDFANEFAKASVTYHEVSH-------DPSIDPSDRLIILSAAVTTSILAPSGPHRSRILATLNRDDRVHTELPAGLGTMLKKMLLEYIVKPEEMKEFEGALA---PHQR----------------------AVVEG-------------------------G-GTVLERAVREHNVGACAKVYDNI---SFSALGAILNLS-------PSSAETIAQRMIEQSRLRAWIDQ------------------P--------SQLIFFESR------------------------------------------------PQLDTDADAQGTAGGLGVEKEEKEVEKVGWGVRWDERIRGTSLRVEGIAEAILAKGLIDA----------------------------------------------------------------------------- [457] 'gi|89293154|gb|EAR91142.1| PCI domain containing protein [Tetrahymena thermophila SB210]' ---------------------MVQLSDILSCPDNTDALANQIISGQEYD-----VLQKAIQN-------------------------------LSIDDQK----LVFTQKFLKSLISM-------------------------Y--SKID-------------IKNMQTIGEFIVKTLK---DKMF-FEY-----------------------------E---VYQT-RVELSKVYEGMNQPYLAGQILAQVNYDS-----PKLQLSVKEKVDKYLSIITFFFE-------MEEQTAAETWISKAGNINYDLI----------------------------------------------DDKY--YKFRYENLFAVNLDFQRKFLPAAQKYYYLSN-------YPDIDFEEANLLLNAASQCAILGNAGPLRTRILATLYKDERIQSIPNFE---MLELTYMQRIVSKEQKDKFAGSLK---KHQL----------------------QILRE-------------------------N-FTVLDEAILQHNITAVSQVYESI---TMKSLSRLVYIG-------RDIVEVCIQTMIEEKRINAKIDQ------------------L--------IDTVSFQRD-----------------------------------------------QQQIN----------------SFYIKTDEDIPVDFNDRISQFCGRLNEFYEKITAK---------------------------------------------------------------------------------- [389] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-56 63-93 101-104 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