#NEXUS [MacClade 4.08 registered to Hirai, ERATO] BEGIN DATA; DIMENSIONS NTAX=27 NCHAR=286; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|15222425|ref|NP 177130.1| heme oxygenase (decyclizing) [Arabidopsis thaliana] >gi|14485563|gb|AAK63006.1| heme oxygenase 3 [' MATTRLNPSCHFPASTRLSCESYLGLRT-TGRISYARTLTAPRGYLAVKANGGQASVVTAAAITEKQQKKYPGESKGFVEEMRFVAMRLHTKDQAREGEKESRSPEEGPVAKWEPTVEGYLHFLVDSKLVYDTLEGIIDGSNFPTYAGFKNTGLERAESLRKDLEWFKEQGYEIPEPMAPGKTYSEYLKDLAENDPQAFICHFYNIYFAHSAGGQMIGTKVSKKILDNKELEFYKWDGQLSQLLQNVRQKLNKVAEWWTREEKSHCLEETEKSFKFSGEILRLILS [285] 'gi|15225771|ref|NP 180235.1| HY1 (HEME OXYGENASE 1) [Arabidopsis thaliana] >gi|4883666|gb|AAB95301.2| heme oxygenase 1 (HO1) [A' -----------PISSSLSIFKNPQLSRFQFSSSSPNPLFLRPRQILSMTMNKSPSLVVAATTAAEKQKKRYPGESKGFVEEMRFVAMRLHTKDQAKEGEKETKSIEERPVAKWEPTVEGYLRFLVDSKLVYDTLELIIQDSNFPTYAEFKNTGLERAEKLSTDLEWFKEQGYEIPEPTAPGKTYSQYLKELAEKDPQAFICHFYNIYFAHSAGGRMIGRKVAERILDNKELEFYKWDGELSQLLQNVREKLNKVAEEWTREEKNHCLEETEKSFKYSGEILRLILS [275] 'gi|22136554|gb|AAM91063.1| At2g26670/F18A8.4 [Arabidopsis thaliana] >gi|14030647|gb|AAK52998.1| At2g26670/F18A8.4 [Arabidopsis' -----------------------------------------------MTMNKSPSLVVAATTAAEKQKKRYPGESKGFVEEMRFVAMRLHTKDQAKEGEKETKSIEERPVAKWEPTVEGYLRFLVDSKLVYDTLELIIQDSNFPTYAEFKNTGLERAEKLSTDLEWFKEQGYEIPEPTAPGKTYSQYLKELAEKDPQAFICHFYNIYFAHSAGGRMIGRKVAERILDNKELEFYKWDGELSQLLQNVREKLNKVAEEWTREEKNHCLEETEKSFKYSGEILRLILS [239] 'gi|21450864|gb|AAG42008.2| putative heme oxygenase HO1 [Arabidopsis thaliana]' --------------------KNPQLSRFQFSSSSPNPLFLRPRQILSMTMNKSPSLVVAATTAAEKQKKRYPGESKGFVEEMRFVAMRLHTKDQAKEGEKETKSIEERPVAKWEPTVEGYLRFLVDSKLVYDTLELIIQDSNFPTYAEFKNTGLERAEKLSTDLEWFKEQGYEIPEPTAPGKTYSQYLKELAEKDPQAFICHFYNIYFAHSAGGRMIGRKVAERILDNKELEFYKWDGELSQLLQNVREKLNKVAEEWTREEKNHCLEETEKSFKYSGEILRLILS [266] 'gi|15217926|ref|NP 176126.1| oxidoreductase [Arabidopsis thaliana] >gi|8979943|gb|AAF82257.1| Contains similarity to heme oxyge' MATSRLNASCRFPASRRLDCESYVSLRAKTVTIRYVRTIAAPRRHLVRRANEDQTLVVVVAAAGEKPERRYPREPNGFVEEMRFVVMKIHPRDQVKEG----KSDSNDLVSTWNFTIEGYLKFLVDSKLVFETLERIINESAIQAYAGLKNTGLERAENLSRDLEWFKEQGYEIPESMVPGKAYSQYLKNIAEKDPPAFICHFYNINFAHSAGGRMIGTKVAEKILDNKELEFYKWDGQLSELLQNVSEELNKVAELWTREEKNHCLEETEKSFKFYWEIFRYLLS [282] 'gi|14485565|gb|AAK63007.1| heme oxygenase 4 [Arabidopsis thaliana]' MATSRLNASCRFPASRRLDCESYVSLRAKTVTIRYVRTIAAPRRHLVRRANEDQTLVVVVAAAGEKPERRYPREPNGFVEEMRFVVMKIHQEIQVKEG----KSVSNDLVSTWNFTIEGYLKFLVDSKLVFETLERIINESAIQAYAGLKNTGLERAENLSRDLEWFKEQGYEIPESMVPGKAYSQYLKNIAEKDPPAFICHFYNINFAHSAGGRMIGTKVAEKILDNKELEFYKWDGQLSELLQNVSEELNKVAELWTREEKNHCLEETEKSFKFYWEIFRYLLS [282] 'gi|15076867|gb|AAK82971.1| putative heme oxygenase 1 precursor [Pisum sativum] >gi|15076865|gb|AAK82970.1| putative heme oxygen' MASPTPTALYQIHSLFLYKTNHPQLSLSQTQSFRSNFFFQRK-LSFELPRMPRKETVISATTS---EKKRHPGEAKGFVEEMRFVAMRLHTKDQAKEGEKEVKKPEERAVTKWEPTVDGYLRFLVDSKIVYDTLEKIVQDAAYPYYAEFKNTGLERSASLDKDLEWFKEQGYTIPEPSSPGLTYAVYLTDLSQNDPQAFICHFYNIYFAHSAGGRMIGKKIASQLLNNQALEFYKWDGDLSQMLQNVRDKLNKVAEEWSREEKNHCLEETEKSFKLSGEILRLILS [282] 'gi|14485575|gb|AAK63012.1| heme oxygenase 1 [Lycopersicon esculentum]' MASISPLSQSQ---------PLLEKPQFTVLNKSQNQFFSIPFTQSCNLSLKKSRMVVSATTAAEKSNKRYPGEAKGFVEEMRFVAMKLHTKDQAKEGEKE---PVDQPLAKWEPSVEGYLKFLVDSKLVYDTLERIVEKAPFPEYAEFRNTGLERSEVLAKDLEWFRQQGHAIPEPSTPGVTYASYLEELSEKDPQAFICHFYNTYFAHSAGGRMIGKKVAEKVLDKKELEFYKWDGDLSQLLQNVRDKLNKVAENWTREEKNHCLEETEKSFKFSGAILRLIFS [274] 'gi|14485567|gb|AAK63008.1| heme oxygenase 1 [Glycine max]' -----------------------------------ARVFLTSPGARTATVMPRRAAVISAATA---ETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWDPSVEGYLKFLVDSKLVYDTLEKIVQEAPHPSYAEFRNTGLERSASLAEDLEWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKLLNNKALEFYKWDDDLPRLLQNVRDKLNKVAEPWSREEKDHCLEETEKSFKLSGEILRLILS [248] 'gi|14485569|gb|AAK63009.1| heme oxygenase 3 [Glycine max]' --------------------------------------ARASPGGVRAAVMPRRTAVISAATA---ETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWNPSVEGYLKFLVDSKLVYDTLEKIVHEAPHPFYAEFRNTGLERSASLVEDLDWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKLLNNKALEFYKWDGDLPQLLQNVRDKLNKVAEPWTREEKDHCLEETEKSFKLSGEILRLILS [245] 'gi|14485579|gb|AAK63014.1| heme oxygenase 1 [Pinus taeda]' MALPTSQALLKNKSTFAVRSNKALLSIGKAFKFGPSDIGFEGQSRSYGRGNSLGGLVVKAAATAEKPRKNYPGEAKGFVEEMRFVAMKLHTRDVAKEGKKE---PDAQPIGKWEPTIEGYLKFLVDSKVVYDTLEDVVQKATYPAYAEFRNTGLERSEKLAKDLEWFRQQGHIIPEPSSPGLSYSKHLQELSEKDPPAFLCHFYNVYFAHTAGGRMIGRKVAEKILDGRELEFYKWEEDLTTLLNRVREKINLVAEGWSREEKNHCLEETEKSFDYSGKLLRLIIS [283] 'gi|51090890|dbj|BAD35463.1| putative heme oxygenase 1 [Oryza sativa (japonica cultivar-group)]' LTAPNALAATSLPFLHGRKSGGGGVSVHAGAPSPSRAVAVVA-RRLWGSASSSRRMVVAAATAAEMAPAASGEEGKPFVEEMRAVAMRLHTKDQAKEGEKE---PQAPPVARWEPSVDGYLRFLVDSKLVFETLETIVDRAAVPWYAEFRNTGLERSEQLKKDLEWFKEQGHTIPEPSAPGTTYASYLEELAEKDSQAFICHFYNVYFAHTAGGRMIGKKVSENILNKKELEFYKWEGNLSQLLQNVRNKLNEVASSWTREEKDHCLDETEKSFSYSGDLLRHIFT [282] lcl|Ppa_HO3_5_1_unnamed_protein_product MAMAVGELGLSVQTGPSKASASAHFRTRISQKADHRSSNYFGRFGVEAPNTSTSSFSIASSAAAEKAKARYPGEKKGFVEEMRFVAMKLHTKDQSKEGEKE---ADVQPIGQWQPTIEGYLKFLVDSKEVYDTMETIVQKAAHPSYELFRNTGLERSERLAKDLEWFASQGHAIPKAGVDGTTYAKYLTELSETDVPAFICHFYNVYFAHSAGGKFIGKKVAEMILDGRELEFYKWDGELSQLLGAVKENLNKVAEEWTRDEKNNCLKETENSFKYSGKILRLIAS [283] lcl|Ppa_HO3_3_1_unnamed_protein_product MAMTVGEFGLSIQSGPSKAPHSVHFGTRISPRVDLRSLNFFGRLGVEAPSTSSNSFVVASSASAEKAKARYPGEKKGFVEEMRFVAMKLHTKDQSKEGEKE---SDAQPIGQWEPTIEGYLKFLVDSKRVYDTMESIVQKASHPSYELFRNTGLERAEKLAKDLEWFAEQGHVIPEPGTDGTTYSKYLTELSETDVPSFICHFYNVYFAHSAGGKFIGKKVAEMILDGRELEFYKWDGELSQLLGAVKENLNKVAEEWTREEKNKCLKETENSFKYSGKILRLIAT [283] 'gi|26190434|emb|CAD34592.1| heme oxygenase [Physcomitrella patens]' MAMAVGELGLSVQTGPSKASASAHFRTRISQKADHRSSNYFGRFGVEAPNTSTSSFSIASSAAAEKAKARYPGEKKGFVEEMRFVAMKLHTKDQSKEGEKE---ADVQPIGQWQPTIEGYLKFLVDSKEVYDTMETIVQKAAHPSYELFRNTGLERSERLAKDLEWFASQGHAIPKAGVDGTTYAKYLTELSETDVPAFICHFYNVYFAHSAGGYFIGKKVAKMILDGRELEFYKWDGELFQLLGAVKENLNKVAEEWSRDEKNNCLKETENSFKYSGKILRLIAS [283] lcl|Smo_HO3_2_2_unnamed_protein_product MAMAASTASIGQEVSPFSQCSSCSFSKAAEFLARSAKISSAGLQRMAGRNQSSSGIRVASTTLSESPRPKRPGERKGFVEEMRFVAMKLHTKDQAKEGGKE---ADVQPVGSWKPTIQGYLQFLVDNKLIYEVLEALVRRASHSFYTEFQDTGLERSEALAKDLEWFQEQGHELPEPSLDGKSYAEFLETIAEEDPPAFICHFYNYYFAHTAGGRFIGKKVADEILDGRELEFYKWKGELPKLLNAVRDKINRISEEWSREDKDRCLKETAKSFKYSGKILRKIIS [283] 'gi|26189984|emb|CAD34591.1| heme oxygenase [Ceratodon purpureus]' MAMAVGELGLGIQNGPSRAPTSAHFWSRISQKVDLRSSNVFGRFGVEAPSTSTSSFSVASSVAPEKSKSR-PGEKKGFVEEMRFVAMKLHTRDQSKEGEKE---ADVQPVGQWKPSIPGYIKFLVDSKKVYDTMETIVEKASHPSSEYFRNTGLERSARLAKDLEWFASQGHEIPEAGPDGITYANLLTELSESDVPAFICHFYNVYFAHSAGGRFIGKQVAQQILDGRELEFYKWDGELSELLGAVKVNLNKVAEEWTREQKDHCLKETENSFKYSGKILRLIVS [282] 'gi|14485577|gb|AAK63013.1| heme oxygenase 2 [Lycopersicon esculentum]' MATLTCYCSSSSSLSLLHKTPKPQFFVKFTSFLSISSKY----QNWTHRVLQCSNFNASSFTLSESDRKQYPGEKKGITEEMRFVAMKFRNSDEMKDDGYESVSSDEDDVGTWQPSIEGFLKYLVDSKLVFSTIERIVDESSDVSYAYFRRTGLERTECISKDLKWFGQQGHEIPEPSIPGVTYANYLEELAEKTPRLFLSHFYNIYFSHIAGGQVIAKKAFERLLEEKELEFYKWEGDEEKLLRDVRDSFNMLAKHWSRDDKNKSLREVTKAFRFMGQIVRLIIL [282] 'gi|6598375|gb|AAC14503.2| heme oxygenase 2 (HO2) [Arabidopsis thaliana] >gi|4530595|gb|AAD22109.1| heme oxygenase 2 [Arabidopsi' MASLLRPTPLL---STPRKLTHSHLHTSISFPFQIS----------TQRKPQKHLLNLRSTPTPSQQRKQYPGENIGITEEMRFVAMRLRNKDTEEEEEEEEDDDDDDEVKTWKPSKEGFLKYLVDSKLVFDTIERIVDESENVSYAYFRRTGLERCESIEKDLQWLREQDLVIPEPSNVGVSYAKYLEEQAGESAPLFLSHFYSIYFSHIAGGQVLVRQVSEKLLEGKELEFNRWEGDAQDLLKGVREKLNVLGEHWSRDEKNKCLKETAKAFKYMGQIVRLIIL [273] lcl|894_Cre_unnamed_protein_product ----------------------------------------------------------------------------GFIAEMRKVAMKLHTKDQAKEGEKEA--PKQGPVRGWTPTRPGYLRFLVESKEVFDTFERLVNSSD--AYKALRNTGLERGPGLAADIAWMEQSFQLAPKPDGAAATYVAFLEKLAKTDPPAFICHYYNFYFAHTAGGRMIGNKVSSMLLDGQTLEFYKWQGDVNEHLEGVRKSINVMAEGWTPAEKEHCLAETESSFKYSGQILRAITE [206] 'gi|14485573|gb|AAK63011.1| heme oxygenase 2 [Sorghum bicolor]' GTRLIAAAA--SAVA----PPPPRRVVAPLRSLS----TRRPGLTVTCCSPSPPPPVVAEAPAPAPPPKQYPGESVGVAEEMRFVAMRLRNTDEDEEEEEEEQEEEDLEAGEWMPSMEGFVRYLVDSKLVFGTIERVVAESTDVAYVYFRKSGLERSASISKDLEWFRKQGIAIPEPSTSGSTYAAYLTELAESNAPAFLSHYYNIYFAHITGGVAIGNKICKKILEGRELEFYKWDTDAELLLKDAREKLNELSKHWTRKDRNLCLKEAAKCFQYLGKMVRLIIL [276] gnl|CMER|CMH209C_heme_oxygenase MVFVTSAGIAA-------------------ARSGCSWFGAARSLRRTVCSRRPQQLLAAAHEAVHHDGAHRPGERKGFVQEMRVVAMRLHTKDQAREGKQE---ESALPITEWRPTRADFLQFLVDSKAVYDFMEGYVAGEANPLFKPFVNTGLERGQALASDIAWFRDEGYQVPEPTEAAQRYIDYLRGLFERSPEAVLCHWYNYYFAHTAGGRMIGRNMENMLFNAKRFEFYKWERDVKQILDEVRERIDEVAKDWPREVKDACLNETGLAFAYSGTILNNLAK [264] 'gi|42569350|ref|NP 180223.2| HO2; heme oxygenase (decyclizing) [Arabidopsis thaliana]' MASLLRPTPLL---STPRKLTHSHLHTSISFPFQIS----------TQRKPQKHLLNLRSTPTPSQQRKQYPGENIGITEEMRFVAMRLRNKDTEEEEEEEEDDDDDDEVKTWKPSKEGFLKYLVDSKLVFDTIERIVDESENVSYAYFRRTGLERCESIEKDLQWLREQDLVIPEPSNVGVSYAKYLEEQAGESAPLFLSHFYSIYFSHIAGGQVLVRQVSEKLLEGKELEFNRWEGDAQDLLKGVREKLNVLGEHWSRDEKNKCLKETAKAFKYMGQIVRLIIL [273] 'gi|14029014|gb|AAK52555.1| Putative heme oxygenase 2 [Oryza sativa (japonica cultivar-group)] >gi|50920987|ref|XP 470854.1| put' MPLAAAVAA--SAVVPPRPPPPPPRRARPLRSFT--GLILTRDLTVARCAPSPPAPAAAEAEAVAVDPRQYPGEAVGVAEEMRFVAMRLRNTDASASEEEEEEEDDDGLEGEWMPSMEGFVKYLVDSKLVFDTVERIVAESTDVAYVYFRKSGLERSARITKDLEWFGGQGIAVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFAHTTGGVAIGNKISKKILEGRELEFYKWDSDVELLLKDTREKLNELSKLVSPELQLSICRRRLPHKRGDEMVSRLMIG [282] lcl|Ppa_HO3_1_1_unnamed_protein_product MATLVVELALAQNCSIKARNQGHVRPIPCKNKTGFCGSGLFGQFAANASKAFSCSISRSLSATTEKRRFRILDKFKGFVEELRFQAMRLHVK---------------EHIAKRGHSTEEYLKFLVDSKMVYETMKAIVMDSSHPSYKLFKMTGLMRASRLAKELDWFIGQGYIIPEAGPAGISYANYLRGLSQTNMPAFVNHLHNVYYAETAGEQFLVQK------------------------------------------------------------------ [205] lcl|Ppa_HO3_4_1_unnamed_protein_product MAALVGGLALAQNCSIKCINQVHAQLIPCAKMMGSEVCGVFGQFRVNSNKIRLRSPSRSLFAGMGNPKFSCLGEFKGFMEELRFQVMRLLMK---------------EQFARRSPTAEEYMKFLVDSKKVYETVEAIVMNSLHPSYEIFRKTGLVKVRRLTKELAWFSSQGYAIPEAGPAGIVDANHLMDLSQTNAPAFISHLHNVCHALSAGDQFLVQK------APPLVSNMKMKSSLVEMLKAMWPKMQQVFE------------------------------ [235] lcl|Ppa_HO3_2_1_unnamed_protein_product MATLVGELAPAQNGSITSRSRVHVRSSSSNEKVGFRGCGMLGKFVVNATRISLSSTSSLRSYAIGNPMFRHSSEFKDFVEELRFQATRLHIN---------------SQVFKSASSAEEYLKFLVVSKMVYETMEVIVINSSHPAYDILKKAELVRVKRLTQELHWFASQGYAIPEAGPAGISYANHLMKLSQTNVPAFIGHLHNVYFAHSAGDQFLVQK------------------------------------------------------------------ [205] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-76 93-114 139-144 206 221-286; END; BEGIN MacClade; Version 4.0 87; LastModified -1057237155; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '24' Geneva '12' '490' '1' all; EditorPosition '45' '7' '931' '1551'; TreeWindowPosition '46' '6' '989' '1630'; ListWindow Characters closed Geneva '9' '50' '10' '273' '359' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '52' '30' '968' '1620'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '833' '43' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '50' 001011001; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '256' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END;