#NEXUS 
[MacClade 4.08 registered to Mineko IWATA, NIBB]


BEGIN DATA;
	DIMENSIONS  NTAX=88 NCHAR=1795;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|15241667|ref|NP 195823.1| LSN (LARSON); DNA binding / transcription factor [Arabidopsis thaliana] >gi|33089289|gb|AAP93641.1'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADAYEPYHVLQQSRRDKLRIPSLDSHFHFHPPPPPSSGGGGGVFPLADSDFLAAGGFHSNNNNNHISNPSYSNFMGFLGGPSSSSSTAVAVAGDHSFNAGL--------------------------------------------------------SSGDVLVFKPEPLSLSLSSHPRLAYDLVVPGV--------------------------------------------------------------------------VNSGFCRSAGEANAAAVTIASRSSGPLGPFTGYASILKGSR---------------------------------------------------------FLKPAQMLLDEFCNVGRGIYTDKVIDD--------------------------------------------------------------------------------------------------------DDSSLLFDPTVENL----CGVSDGGG---GDNGKKKSKLIS------MLDE------------------------VYKRYKQ--YYEQLQAVMGSFECV-------AGLGHAAPYANLALKALSKHFKCLKNAITDQLQFSHNNKIQ-------------------------------------------------------------------------------------------QQQQ------CGHPMNS-----------------------------------------------------------------------------------------------------ENKTD------SLRFGGSDSSRGL-CS-AGQRHGFPDH-------------HAPVWRP-HRG------LPERAVTVLRAWLFDHFLHP-------YPTDTDKLMLAK-QTGLSRN---------------QVSNW-FINARVRVWKPM--------VEEIHMLETRQS--QRSSSSSWR-----DERTSTTVFPDNSNNN-----PSSSSAQQRPNNSSP----PRRARNDDVHGTNNNNSYVNSGSGGGSAVGFSYGIGSSNVPV--MNS--------------------------------------------------------------------------------------------------------------------------------------------------------------STNGGVSLTLGLHHQI----------------------------------------GLPEPFPMTTAQRFGLDGGSGDGGGGYEGQNRQFGRDFIGGS-------------------------------NHQFLHDFVG------------------   [575]
'gi|33285288|emb|CAD58040.1| homeodomain protein vaamana [Arabidopsis thaliana] >gi|21536507|gb|AAM60839.1| putative homeodomain'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADAYEPYHVLQQSRRDKLRIPSLDSHFHFHPPPPPSSGGGGGVFPLADSDFLAAGGFHSNNNNNHISNPSYSNFMGFLGGPSSSSSTAVAVAGDHSFNAGL--------------------------------------------------------SSGDVLVFKPEPLSLSLSSHPRLAYDLVVPGV--------------------------------------------------------------------------VNSGFCRSAGEANAAAVTIASRSSGPLGPFTGYASILKGSR---------------------------------------------------------FLKPAQMLLDEFCNVGRGIYTDKVIDD--------------------------------------------------------------------------------------------------------DDSSLLFDPTVENL----CGVSDGGG---GDNGKKKSKLIS------MLDE------------------------VYKRYKQ--YYEQLQAVMGSFECV-------AGLGHAAPYANLALKALSKHFKCLKNAITDQLQFSHNNKIQ-------------------------------------------------------------------------------------------QQQQ------CGHPMNS-----------------------------------------------------------------------------------------------------ENKTD------SLRFGGSDSSRGL-CS-AGQRHGFPDH-------------HAPVWRP-HRG------LPERAVTVLRAWLFDHFLHP-------YPTDTDKLMLAK-QTGLSRN---------------QVSNW-FINARVRVWKPM--------VEEIHMLETRQS--QRSSSSSWR-----DERTSTTVFPDNNNNN-----PSSSSAQQRPNNSSP----PRRARNDDVHGTNNNNSYVNSGSGGGSAVGFSYGIGSSNVPV--MNS--------------------------------------------------------------------------------------------------------------------------------------------------------------STNGGVSLTLGLHHQI----------------------------------------GLPEPFPMTTAQRFGLDGGSGDGGGGYEGQNRQFGRDFIGGS-------------------------------NHQFLHDFVG------------------   [575]
'gi|23397273|gb|AAN31918.1| putative homeodomain protein [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADAYEPYHVLQQGRRDKLRIPSLDSHFHFHPPPPPSSGGGGGVFPLADSDFLAAGGFHSNNNNNHISNPSYSNFMGFLGGPSSSSSTAVAVAGDHSFNAGL--------------------------------------------------------SSGDVLVFKPEPLSLSLSSHPRLAYDLVVPGV--------------------------------------------------------------------------VNSGFCRSAGEANAAAVTIASRSSGPLGPFTGYASILKGSR---------------------------------------------------------FLKPAQMLLDEFCNVGRGIYTDKVIDD--------------------------------------------------------------------------------------------------------DDSSLLFDPTVENL----CGVSDGGG---GDNGKKKSKLIS------MLDE------------------------VYKRYKQ--YYEQLQAVMGSFECV-------AGLGHAAPYANLALKALSKHFKCLKNAITDQLQFSHNNKIQ-------------------------------------------------------------------------------------------QQQQ------CGHPMNS-----------------------------------------------------------------------------------------------------ENKTD------SLRFGGSDSSRGL-CS-AGQRHGFPDH-------------HAPVWRP-HRG------LPERAVTVLRAWLFDHFLHP-------YPTDTDKLMLAK-QTGLSRN---------------QVSNW-FINARVRVWKPM--------VEEIHMLETRQS--QRSSSSSWR-----DERTSTTVFPDNSNNN-----PSSSSAQQRPNNSSP----PRRARNDDVHGTNNNNSYVNSGSGGGSAVGFSYGIGSSNVPV--MNS--------------------------------------------------------------------------------------------------------------------------------------------------------------STNGGVSLTLGLHHQI----------------------------------------GLPEPFPMTTAQRFGLDGGSGDGGGGYEGQNRQFGRDFIGGS-------------------------------NHQFLHDFVG------------------   [575]
'gi|19352105|dbj|BAB85944.1| qSH-1 [Oryza sativa (indica cultivar-group)] >gi|19352101|dbj|BAB85942.1| qSH-1 [Oryza sativa (indi'    -------------MS------------------------------------------SAAGGGGYGGG------QGGGAEHHHHHHG-------------------------------------------------------------------------------------------HAGHLLLHHHPQHVAGAAVAAAAAAAGGQMYHVPQ-----------------------------------------------HSRREKL---------------------------------------RFPPDAG-------D---------------------------------------SPPPH-------------GHGHGHAPQQQQQHGSWP---------------------------------PPP-----AFYSYASSSS--SYSPHSPTLAQA-QLVAHGL--------------------------------------------------APPLPQIPTQNFSLSLSSASSNPPPPQAQPR---------------------------------------RQL----GGLAQ--------------ATGPFGPF-------------------------------TGYAAVLGRSR---------------------------------------------------------FLGPAEKLFEEICDVGGAASHVDRTI-------------------------SDEGLLDADPMD---------------------------------------------------GVDHDVVDH--------DL-----GGADRAA----ADAGPISG---AEQQWKKTKLIS------MMEE------------------------VCKRYRQ--YYQQVQAVMASFETV-------AGFSNAAPFAALALRAMAKHFKCLKSMILNQLRNTSNKV---------------------------------------------------------------------------------------------AVKD-----GLN-----------------------------------------------------------------------------------------------------------KEIAVFGLAGGSSGGA---GLQR-AN-SASAFG-QPH-------------NI--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPTDGDKQMLAK-QTGLTRN---------------QVSNW-FINARVRLWKPM--------VEEIHNLEMRQM--HK-H-SVVD-----KG---QH------SVH-----HQA----------QH----S-SQ--CSGNPSV-----------------PSDSHPGQSSS-----------------------------------------------ITRN-H----NTAASQ---GFPD----ELSQMSQSI-QGQV---SFA-YNGLTSQ----------HNIASPHHQHQQ--VGGV--------------SI------------G-----GGNGGVSLTLGLHQ-N-----NRV--CI-AEPLPAALP-ANLA----HRFGLEE-V-----------------SDAYVMSSF-GGQDRHFG-KEI----------------------------------GGHLLHDFVG------------------   [612]
'gi|34908294|ref|NP 915494.1| putative homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|15408891|dbj|BAB64282.1|'    -------------MS------------------------------------------SAAGGGGYGGG------QGGGAEHHHHHHG-------------------------------------------------------------------------------------------HAGHLLLHHHPQHVAGAAVAAAAAAAGGQMYHVPQ-----------------------------------------------HSRREKL---------------------------------------RFPPDAG-------D---------------------------------------SPPPH-------------GHGHGHAPQQQQQHGSWP---------------------------------PPP-----AFYSYASSSS--SYSPHSPTLAQA-QLVAHGL--------------------------------------------------APPLPQIPTQNFSLSLSSASSNPPPPQAQPR---------------------------------------RQL----GGLAQ--------------ATGPFGPF-------------------------------TGYAAVLGRSR---------------------------------------------------------FLGPAEKLFEEICDVGGAASHVDRTI-------------------------SDEGLLDADPMD---------------------------------------------------GVDHDVVDH--------DL-----GGADRAA----ADAGPISG---AEQQWKKTKLIS------MMEE------------------------VCKRYRQ--YYQQVQAVMASFETV-------AGFSNAAPFAALALRAMAKHFKCLKSMILNQLRNTSNKV---------------------------------------------------------------------------------------------AVKD-----GLN-----------------------------------------------------------------------------------------------------------KEIAVFGLAGGSSGGA---GLQR-AN-SASAFG-QPH-------------NI--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPTDGDKQMLAK-QTGLTRN---------------QVSNW-FINARVRLWKPM--------VEEIHNLEMRQM--HK-H-SVVD-----KG---QH------SVH-----HQA----------QH----S-SQ--CSGNPSV-----------------PSDSHPGQSSS-----------------------------------------------ITRN-H----NTAASQ---GFPD----ELSQMSQSI-QGQV---SFA-YNGLTSQ----------HNIASPHHQHQQ--VGGV--------------GI------------G-----GGNGGVSLTLGLHQ-N-----NRV--CI-AEPLPAALP-ANLA----HRFGLEE-V-----------------SDAYVMSSF-GGQDRHFG-KEI----------------------------------GGHLLHDFVG------------------   [612]
'gi|53749351|gb|AAU90210.1| putative homeodomain protein [Oryza sativa (japonica cultivar-group)]'                                   -------------MS------------------------------------------SAAGGG--GGY------GGGGGEHQHQQQQ-------------------------------------------------------------------------------------------H--HLLL----------------GQAAGQLYHVPQ-----------------------------------------------HSRREKL---------------------------------------RFPPDHP-----AES---------------------------------------PPPPP--------------------------PGSWP---------------------------------LPP-----AFYSYASSSS--SYSPHSPTLAHA-QLVAHGMPPGAA--------------------------------------------TSGG-AQIPSQNFALSLSSASSNPP---PTPR---------------------------------------RQFG-GGGGGGG--------------AAGPYGPF-------------------------------TGYAAVLGRSR---------------------------------------------------------FLGPAQKLLEEICDVGGRPAQLDRG--------------------------SDEGLLDVDAMD---------------------------------------------------AAGS--VDH--------EM-----DGSDRAV----ADAVTVSG---AEQQWRKTRLIS------LMED------------------------VCKRYRQ--YYQQLQAVVSSFETV-------AGLSNAAPFASMALRTMSKHFKYLKGIILNQLRNTGKGA---------------------------------------------------------------------------------------------TKDG-----LGK-----------------------------------------------------------------------------------------------------------EDTTNFGLMG---GGA---GLLR-GN-NVNSFS-QPH-------------NI--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPTDSDKQMLAK-QTGLTRN---------------QVSNW-FINARVRLWKPM--------VEEIHNLEMRQL--QK-N-PSLD-----KNQ--LS------MQH-----------------TQH----S-SD--SSGKPCD-----------------PSNSLQGQSSS-----------------------------------------------MTRN-H----SISASRH---IED----GLSQMPHDI-SGQV---SFA-YNGLAAH----------HSIAMAHHHQPD--LIGT--------------GG------------A-----ANAGGVSLTLGLHQNN-----NRA--YI-AEPLPAALP-LNLA----HRFGLED-V-----------------SDAYVMSSF-GGQDRHFT-KEI----------------------------------GGHLLHDFVG------------------   [580]
'gi|13752409|gb|AAK38646.1| homeodomain protein JUBEL2 [Hordeum vulgare]'                                    -------------MS------------------------------------------SPAGG-------------YGGAEAHHH------------------------------------------------------------------------------------------------GHMLLHSHAHH-----MAAAAAASGGQLYHVPQ-----------------------------------------------HSRREKL---------------------------------------RFPPDAA-----AED---------------------------------------SPPTP-------------LAPH----HQHHQAGAW----------------------------------PPP-----AFYSYASSSS--SYSPHSPTVPQGQQLVLNGLTAQQV--------------------------------------------TAQQFPHIPTHNFSLSLSSASSNPATAPPTPR---------------------------------------KQQ----E--PG--------------GAGPCGPF-------------------------------TGYASVLGRSK---------------------------------------------------------FLVPAQRLLEEICDVGGAAAHADRSL-------------------------PDEGLLDADTM--------------------------------------------------------DVADD--------EL-----DA-----------AGPMYG---AEQQWKKTRLIS------MMEE------------------------VCKRYRQ--YYQQVQSAIASFETV-------AGFSNAAPFTALALRVMAKHFKTIKEMILSQLRNTSKMP---------------------------------------------------------------------------------------------VKGS-----SMS-----------------------------------------------------------------------------------------------------------KDITIFGLGGG--GGAPVGGFQR-GS-SVNGFG-QPH-------------NI--WRP-QRG------LPERSVTVLRAWLFEHFLHP-------YPTDGDKQMLAK-QTGLTRN---------------QVSNW-FINARVRLWKPM--------VEEIHNLEMRQV--HK-Q-SPHD-----NGS--QH------GVH-----GHA-HQP---SSQQQ----Q-QQ--RSGKRSE-----------------PCDSHLGQCSG-----------------------------------------------VTRN-HHHHSNPAASSHGGGFPD----DLSQMSHSMQQGQV---TFAGYGALPSQSQQHQHQHQHSSMASPQHPHHQHHVGAA--------------GA------------G-----NG-GGVSLTLGLHQ-N-----NRV--CF-GEP----LP-ANLA----HRFGLEDVV-----------------SDPYVMGSFGGGQDRHFA-KEI----------------------------------GGHLLHDFVG------------------   [611]
'gi|15226313|ref|NP 180366.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|4510417|gb|AAD21503.1| putative home'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDMIKPDFQQIRRDKFRVEQMNDFPNTWTQQQHQNIRIPNNLDLIGILQNQISVPVQTDLYQDSAATFMNMPQSIHRDPQGPSNWRISDLSQPSTVNHGYDQAGIRPNNVADLLSDHFSSRNQILDRPLYVGRDSIPQSSMIRRSEVSCLDDNQKGCVTVACSGTGNEILRSSYDQGSSSGSYRGEFSFLPSLENQSVAHNASNWNHGPVN--------------------------------------------------------VTATSHTNSKKGFPLSLLSDIPPSRDVGNAAV-------------------------------------------------------------------------------------------LSTMNIHGPLGPFTGYASILKSSR---------------------------------------------------------FLEPAQKMLEEFCISYASKIISRSES---------------------------------------------------------------------------------------------------------TSMEDDDDDDDNLS----GFSSSSEPLE-PKNRLKKAKLLF------LQEE------------------------VCKWYKL--YNHQLQTVMSSFNTV-------AGLNTATPYISLALKRTSRSFKALRTAIAEHVKQISSHSSN-------------------------------------------------------------------------------------------GNNN------------------------------------------------------------------------------------------------------------------------------NRFQKRQRSLIG-NNVGFES---QQQ-------------HI--WRP-QRG------LPERAVAVLRAWLFDHFLHP-------YPTDSDKQMLAT-QTGLSRN---------------QVSNW-FINARVRLWKPM--------VEEIHTLETKAIKNADTSHNIEP-----SNRPNTV------SSP-----SHEQTLTGLSGTKRS----RLEYMDMVG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FNRGNVSLTLELRRGV------------------------------------------------------------------DNVIQTQTQDHQFGT--------------------------------GSQMFHDFVG------------------   [584]
'gi|31746344|emb|CAC82981.1| putative BEL1-like protein [Gnetum gnemon]'                                    ----------------------------------------------------------------------------------------------------------------------------ASQSTVAAESHSKSKSVGDRMPLYDASMIPGSEMFNFSAEAELLSFQSKNLSSQQSASSEDAVSCRPVAAGPFTSFGHTVSKDSVVSNVTSWKNYSAQGSEEWPGRVILNSVGYEGGQDSLATPLMLGGSVKEVAAQADAMRL---------------------------------------YLMNPGY--DAYSEA---------------------------------------STAAHSSNNIANQIHDVHKQIVEVPAHFQSYIQNHAVSVVGETSHSSGSQWVSGTNELALLPSYSDIQNGHYLPSSRYYGIGSWANRHNALQDSYQGAFVEGKVGVEVRPQQLS--------------------------------------------IGRDGCGPSGQGLSLSLSPHQPSEVPLHQIDA--------------------------------VCNRTNILQLS-ADQLKGKSEDVQS--------RNEGAHGPQGHPSPYSRRVLSRVGAPMDLQMNVGPLGPFTGYATILKGSK---------------------------------------------------------YLKPAQQLLEEFCNVGKGLNYQCNPSKQKLLGHHLSAEKSLPDAVIPPISTTVKGEVDGRKAS---------------------------------------------------ACAA-------------SSSMSVVDKTSSEPAMGEQLVISGAR---FEMHKKRTRLLA------LLDE------------------------LQRRYRQ--YNDQMQMIITSFESV-------GGLGAAAPYTSLALKAMSRHFKCLKDAIGDQLKVISKAL---------------------------------------------------------------------------------------------GNES-----SLP----G-----------------------------------------------------------------------------------------------------VSVGE------TPRLRLVDQGIRN-QR-SVHHLGMLEQ-------------HA--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPTDADKHMLAR-QTGLSRS---------------QVSNW-FINARVGLWKPM--------VEEMYELETREA--SQVD-APPG-----KTDREER------DTS-----K---------GGIST----EKNASGRGKVLMETISEMQSV---------SGCGSSSKLEQT--TSTSQNGHENCGTSVSIPLESSYLHAHEADAARETAVNVNRHFSGQTQGMPTSHSAISGVESD-------------------------SGYADSSGFSYEQATKRLRQGLGNTIDFSSYMGGRISHE----------------------------SLNPRPTGNASVSLTLGLRHSGAQEKYTGALYLPREDTLQGCNSRYEIHEIHD--------------------------GHNQACVGGFETHDIQFRKHLI----------------------------------GTQLLQ----------------------   [900]
'gi|84453182|dbj|BAE71188.1| BEL1-like homeodomain transcription factor [Trifolium pratense]'                                    -------------MA------------------------------------------T----------------------YFHNNSE-------------------------------------------------------------------------------------------IQG--------------------GSADGL---------------------------------------------------------QTL---------------------------------------IFMNPSGYIN-YSDT---------------------------------------PQPPPHAGNLVFLNSAATLAGNGNTSIQQQHNLSHA---------------------------------PPQ-----FVGVPLSAEQ--SVQAHHDISA------LHGFPPRMQYNMWNAAD----------------------------------PNSAAREATRATQGLSLSLHAQGSG------------------------------------------------EDAR-VSAGGSC--------------SSASNNGV-------------------------------SGIQSVLLNSK---------------------------------------------------------YLKATQELLDEVVNVNGGI----KVE-------------------------SVKKSFEKNKVV---------------------------------------------------GESSTAVSG--------DGGSVGGDGSGKRS----TELSTTER---QEVQMKKAKLIN------MLDE------------------------VEQRYRQ--YHNQMQMVISSFEQV-------AGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSL---------------------------------------------------------------------------------------------GEDD-----SFG-----------------------------------------------------------------------------------------------------------GKIE------GSRLKYVDHHLRQ-QR-AIQQLGMMHH-------------NA--WRP-QRG------LPERSVSVLRAWLFEHFLHP-------YPKDSDKHMLAK-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYTEEMKEQ--EM-N-GSED-----NKS--SK------HID-----EDT-SMK---STTPQ----Q-VP--TSETESKSFNSKQD---------IPIVSVSTQSTSP--IGVN---------VRNNNSGFSF-----TELDGIT----QASPKRTRN-HEILQSPNHVKSNETNNN----NNEQISMKFGDDRQ---SRDGYCFMGNQ----------TNFIAGFGQYPMEEIGRF--------------DA----EQF-TPRFS-----GNNNGVSLTLGLPHCD-----TLS--GT-HQSFMPNQN-IQLG----RRLDISEQN-----------------EFGDSSAAF-ESMNMQNP-KRF----------------------------------AAQLLPDFVA------------------   [651]
'gi|15224060|ref|NP 179956.1| BLH4 (BEL1-like homeobox 4); DNA binding / transcription factor [Arabidopsis thaliana] >gi|7932288'    -------------MG------------------------------------------LATTT------------SSMSQDYHHHQ-------GIFSFSNGFHRSSS---TTHQE------EVDESAVVSGAQ-------------IPVYETAGMLSEMFAYPGGG-GGGSGGEILD--QSTKQLLEQQNRH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNNSTLHMLLPN------HHQGFAFTDE---------------------------------NTMQPQQ--QQHFTWPSSSSDHHQNRDM---IGTV------------------------------------------------------HVE-----GGKGLSLSLSSSL-AAAKAEEYRSIYCAAVDGTSSSSNASAHHHQFNQFKNLLLENSSSQHHHHQVV-GHFGSSS--------------SSPMAASS------------------------------SIGGIYTLRNSK---------------------------------------------------------YTKPAQELLEEFCSVGRGHFKKNKLS--------------------------------------------------------------------------------------------RNNSNPNTTGGGGGGGSSSSAGTANDS----PPLSPADR---IEHQRRKVKLLS------MLEE------------------------VDRRYNH--YCEQMQMVVNSFDQV-------MGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELL---------------------------------------------------------------------------------------------GDKE-----AAGAASSG-----------------------------------------------------------------------------------------------------LTKGE------TPRLRLLEQSLRQ-QR-AFHHMGMMEQ-------------EA--WRP-QRG------LPERSVNILRAWLFEHFLNP-------YPSDADKHLLAR-QTGLSRN---------------QVSNW-FINARVRLWKPM--------VEEMYQQEAKER--EE-A-EEEN-----ENQ------------------QQQRRQQ---QTNNN----DTKPNNNEN---------------------NFTVI--TAQTP--TTMT---------STHHENDSSFLSS-------------------------VAA---------ASHG---------------------GSDAFT-VATC---------------------QQDVSDF---------------HVDGDGVNVIRFGT-----KQTGDVSLTLGLRHSG-----NIP-----------------------------------------------------------------DKNTSF----------------------------------SVRDFGDF--------------------   [627]
'gi|22652119|gb|AAN03623.1| BEL1-related homeotic protein 13 [Solanum tuberosum]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGTRESMQL---------------------------------------FLMNPQPR----------------------------------------------SPSPSPPNSTSSTLHMLLPNPSSTSTLQGFPN-------------------------------------PAEGSFGQFITWGNGGASAATATHHLNAQNEIGGV-----------------------------------------------------------NVVESQGLSLSLSSSLQHKAEE-------------------------------------LQMSGEAGGMM-FFNQGGS---------------------STSGQYRYKNLNMGGSGVSPNIHQVHVGYGSSLGVVNVLRNSK---------------------------------------------------------YAKAAQELLEEFCSVGRGKLKKTNNK----------------------------AAANNPNT---------------------------------------------------------------------NPSGANNEASSKDV----PTLSAADR---IEHQRRKVKLLS------MVDE------------------------VDRRYNH--YCEQMQMVVNSFDLV-------MGFGTAVPYTALAQKAMSRHFRCLKDAIGAQLKQSCELL---------------------------------------------------------------------------------------------GEKD-----AGN---SG-----------------------------------------------------------------------------------------------------LTKGE------TPRLKMLEQSLRQ-QR-AFHQMGMMEQ-------------EA--WRP-QRG------LPERSVNILRAWLFEHFLHP-------YPSDADKHLLAR-QTGLSRN---------------QVSNW-FINARVRLWKPM--------VEDMYQQEAKDE--DGDGDEKSQ-----SQNSGNNIIA---QTP-----TPNSLTNTSSTNMTT----TTAPTTTTALAAAETGTAATPI---------------------------------------TVTSSKRSQINATDSDPSLVAINSFSENQATFPTNIHDPDDC--------------------------------------------RRGNLSGDDGTTTHDHMGSTMIRF---------------------------------GTTAGDVSLTLGLRHAG-----NLPENTHFFG------------------------------------------------------------------------------------------------------------------------------   [567]
'gi|13877513|gb|AAK43834.1| BEL1-like homeobox 4 [Arabidopsis thaliana]'                                    -------------MG------------------------------------------LATTT------------SSMSQDYHHHQ-------GIFSFSNGFHRSSS---TTHQE------EVDESAVVSGAQ-------------IPVYETAGMLSEMFAYPGGG-GGGSGGEILD--QSTKQLLEQQNRH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNNSTLHMLLPN------HHQGFAFTDE---------------------------------NTMQPQQ--QQHFTWPSSSSDHHQNRDM---IGTV------------------------------------------------------HVE-----GGKGLSLSLSSSL-AAAKAEEYRSIYCAAVDGTSSSSNASAHHHQFNQFKNLLLENSSSQHHHHQVV-GHFGSSS--------------SSPMAGSS------------------------------SIGGIYTLRNSK---------------------------------------------------------YTKPAQELLEEFCSVGRGHFKKNKLS--------------------------------------------------------------------------------------------RNNSNPNTTGGGGGGGSSSSAGTANDS----PPLSPADR---IEHQRRKVKLLS------MLEE------------------------VDRRYNH--YCEQMQMVVNSFDQV-------MGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELL---------------------------------------------------------------------------------------------GDKE-----AAGAASSG-----------------------------------------------------------------------------------------------------LTKGE------TPRLRLLEQSLRQ-QR-AFHHMGMMEQ-------------EA--WRP-QRG------LPERSVNILRAWLFEHFLNP-------YPSDADKHLLAR-QTGLSRN---------------QVSNW-FINARVRLWKPM--------VEEMYQQEAKER--EE-A-EEEN-----ENQ------------------QQQRRQQ---QTNNN----DTKPNNNEN---------------------NFTVI--TAQTP--TTMT---------STHHENDSSFLSS-------------------------VAA---------ASHG---------------------GSDAFT-VATC---------------------QQDVSDF---------------HVDGDGVNVIRFGT-----KQTGDVSLTLGLRHSG-----NIP-----------------------------------------------------------------DKNTSF----------------------------------SVRDFGDF--------------------   [627]
'gi|22652123|gb|AAN03625.1| BEL1-related homeotic protein 22 [Solanum tuberosum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------TSVYETAGLLSEMFNFQTTSTAATELLQNQLSNNYRHPNQQPHHQPPTREWFGNRQEIVVGGSLQVTF-------------GDTKDDVNAKVLLSNRDSVTDYYQRQHNQVPSINTAESMQL---------------------------------------FLMNPQPSS--------------------------------------------------PSQSTPSTLHQGFSS-------------------------------------------------PVGGHFSQFMCGGASTSSNP---------------------------------------------------------------------IGGVNVIDQGQGLSLSLSSTLQHLEASKVEDL----------------------------------RMNSGGEML-FFNQESQ-------------------------------------------NHHNIGFGSSLGLVNVLRNSK---------------------------------------------------------YVKATQELLEEFCCVGKGQLFKK----------------------------INKVSRNNNTST---------------------------------------------------SPIINPSG---------SNNNNSSSSKAIIP----PNLSTAER---LDHQRRKVKLLS------MLDE------------------------VEKRYNH--YCEQMQMVVNSFDLV-------MGFGAAVPYTALAQKAMSRHFKCLKDGVAAQLKKTCEAL---------------------------------------------------------------------------------------------GEKD-----ASS--SSG-----------------------------------------------------------------------------------------------------LTKGE------TPRLKVLEQSLRQ-QR-AFQQMGMMEQ-------------EA--WRP-QRG------LPERSVNILRAWLFEHFLHP-------YPSDADKHLLAR-QTGLSRN---------------QVANW-FINARVRLWKPM--------VEEMYQREVNED--DVDDMQENQ-----NSTNTQI------PTP-----NIIITTNSNITETKS----AATA---------------------------------------------------------TIASDKKPQINVSEIDPSIVAMNTHYSSSMPTQLT------------------------------------NFPTIQDESDHILYRRSGAEYGTTNMASNSEIGSNMITF--------------------------------GTTTASDVSLTLGLRHAG-----NLPENTHFSG------------------------------------------------------------------------------------------------------------------------------   [620]
'gi|13752407|gb|AAK38645.1| homeodomain protein JUBEL1 [Hordeum vulgare]'                                    -------------MGIAAPPC---QATRQHVSTPKSS-----AAIQDDGRPATASSMSHSQGFHQGSSG-VYGFSSDGFD-RPGSSQDQQ---HQEHDHVAQQSRRDKLRVQGFDPAAA----GLLPIDGDQH-VEPGAMYDH--AAAAGASNMLAEMFNFSAQTPSGPSATELLASQMNANYRFGFRQQAPGAVAGLPGDGGWFGSAG-PGR---------AG------VVLGGANL--LGETSSPKQQ-GGMAGLATDPAAAMQL---------------------------------------FLMNPQQQQQSRS-S---------------------------------------PTSPPPSDAQS------------------------------------------------------------------------------AI-QHHEAFQAYGNA-ASSFG------------------------------------------------GG-GAGVVEGQGLSLSLSPSLQQLEMAKQAEE-----------------------------------LRVRDGVL-YFNRQQQ---------------QQQQQQAASV--QQLPMALHGQVGSMGQQLHVG--YGPAGVAGVLRNSK---------------------------------------------------------YTRAAQELLDEFCSVGRGQTIKGG---------------------------GRGGSSSNPNAS---------------------------------------------------KGGPSS-----------SGAAQSPSSASKEP----PQLSPADR---FEQQRKKAKLIS------MLDE------------------------VDRRYNH--YCDQMQMVVNFFDSV-------MGFGAATPYTALAQKAMSRHFRCLKDAIAAQLRHTCELL---------------------------------------------------------------------------------------------GEKD-----AGT--SSG-----------------------------------------------------------------------------------------------------LTKGE------TPRLRAIDQSLRQ-QR-AFHHMGMMEQ-------------EA--WRP-QRG------LPERSVSILRSWLFEHFLHP-------YPSDADKHLLAR-QTGLSRN---------------QVSNW-FINARVRLWKPM--------IEEMYQQETKEL--EGSSAAAGG-----GGGVGGP------ESG-----NDPSGAD------------------------------------------------DLHSPT--TTGSQQQLVIHHGGGRYGQQEHGMSGVHPHKLDPGAGPSVADAAFVGLDPAELLGGDAHVGAADDLYGRFEPGVRMRYGPATTG-----------------------------------------------------------------------------AVSGDVSLTLGLQHAG--------------------------------------------------------------------------------------------------------AGNQGPDGSGRFSLRDYNGC-----------------   [759]
lcl|Smo_At5g02030_2_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVFIPGPAASQTPIGVPLHSSQNSLSQTSQVTSVSNSPVAYRGGSGNGGGGSHFSSWKSGDELVFMPGSERAAKTSMDVSDFSDYHQHAAAAAAFHQMQDHLSSQAPGG--------------------------------------------------------AAGGGGGGVFQGLSLSLSSQQPPPLNAFDVIQ-------------------------------------------------------QSGLDHGQDHQADSKRSKLAADLSHFRRDFIGGAAAPKVPDAASATPAMSASFNIISSSR---------------------------------------------------------YLKACQQLLEEVCSVGRGGKQKSKPSNSQGWTAAGGGGGGAASPLTSPTSATTPSAPANNNPAPTTSKDQSAPAPAAGSSQELSNEKDACVSAGNNTAVSSTSPGGGGAKTAPGTGGAGGATTSGTGTASAAAAPSSIEGGVEST----SALSAEEK---QELETKKSKLIA------MLQE------------------------VDRRYRQ--YYDQMQVVISSFDAV-------AGVGAATPYTALALQAMSRYFRCLKDAITGQISLVCKSL---------------------------------------------------------------------------------------------GEED-----ISK---QI-----------------------------------------------------------------------------------------------------TTKSP------TSRLRFIDQQIRQ-QR-AFQQLGMLNQ-------------HA--WRP-QRG------LPERSVSILRAWLFEHFLHP-------YPKDADKMMLAR-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYQEETRDH--ELDAAVARM-----QAASEEN-----------------------ELKNSS----DALTDPKSGKLMSMDHS-EQDFIHETSPVDYNPGLRKQQQQN--MVVGSSPADLYEDSSVQHHQQLKKSR--------------------------------------------------------------YHDPSSADFVHHHMEVDMKPESDDSLGVHGYGGGGGGGY--------------HDQSLRFSPANPGFRYNLNPSPGGGVSLTLGLQHSD-----SSLGGVIHPHAAAAAAAYLQPQGFHALARGGGGGGGGGGGGGDDFSS?----------------------------------------------------------------------------------------   [758]
'gi|7239157|gb|AAF43095.1| homeodomain protein [Malus x domestica]'                                    -------------MGIVTLPPLPPPPPKGNLHHRHHSIDSENYSNPPNSMSQDYHQGIFTFSNGFERSAMTTHQEQQQQQQHHLAQQIRREKLRVQGFETPPPPPLVGLNEEESSG-----------------------------LPAYETAGMLSEMFNYPPGG-GPVGAAELLEHPMSANYRMMPRPQQAAAVSAAADWYGRVGGGGLGPL------------------------------GDSKNQHHHQISTINADSAAAMQL---------------------------------------FLMNPSQPR---------------------------------------------SPSPPPSHTTSSTLHMLLPNPSTTTNSLQGFAAASG-----------------------------------GGAFGQFTWVPESHQGHEAGGNTAGG-------------------------------------------------------------GGEIGGVVEGQGLSLSLSTSLQHLEAAKAEEF--------------------------------RMGSDSASGLL-YYNNQGDHQH-----------QGSNPQYKNLGSHHHQALHSLQQGGVVGGHHVSFGSSSSFGVVNVLRNSK---------------------------------------------------------YVKAAQELLEEFCSVGRGQLKKNKFG--------------------------GSTSGRQNTTT---------------------------------------------------NPSSNPASGG-------GGDGGASSSSSKDV----PPLSAADR---IEHQRRKVKLLS------MIDE------------------------VDRRYNH--YCEQMQMVVNAFDLV-------MGFGAAVPYTALAQKAMSRHFRCLKDAIAAQLKHSCELI---------------------------------------------------------------------------------------------GEKD-----GAG--TSG-----------------------------------------------------------------------------------------------------ITKGE------TPRLKLLEQSLRQ-QR-AFHQMGMMEQ-------------EA--WRP-QRG------LPERSVNILRAWLFEHFLHP-------YPSDADKHLLAR-QTGLSRN---------------QVSNW-FINARVRLWKPM--------VEEMYQQEANEE--EEVGEGGVG-----GATSAAA------DQE-----RERNSNA---GLAAQ----TPTPTTTTTTTTK------------------------------------------------NSPASKRSDINASENDPSLVAINRHQQQQHHHPMMATTTSTTVASPAYQCFPAAASDD-------------TCRSYGTTSANANIAAHHDHQNSSNIDSSTTLISFGTT-----------------------------------TAAGDVSLTLGLRHAGGGGGNNMPDKTS-----------------------------------------------------------------------------------------------------SSFSIRDFGGC-----------------   [809]
'gi|23308413|gb|AAN18176.1| At2g16400/F16F14.10 [Arabidopsis thaliana] >gi|15983781|gb|AAL10487.1| At2g16400/F16F14.10 [Arabidop'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATYYKTGSSEIYSRPEFVPGNAM---------------------------------------------NYTNSFTET---------------------------------------FPRDSTNNVSPSKEIQVLSSLGGVSQMVEIQDSGSWRD------------------------------------------------------------------------------------------------------------------------QEDNDRNRFPVMRRLGLSSQIETSRGNNNNEY---------------------------------------------------------------------------------------------------ATQVVSGFTRTIHNSK---------------------------------------------------------YLKAAQELLDETVNVKKALKQFQPEGD--------------------------------------------------------------------------------------------------------KINEVKEKNLQTNT----AEIPQAER---QELQSKLSKLLS------ILDE------------------------VDRNYKQ--YYHQMQIVVSSFDVI-------AGCGAAKPYTALALQTISRHFRCLRDAISGQILVIRKSL---------------------------------------------------------------------------------------------GGEQ-----DGS---DG-----------------------------------------------------------------------------------------------------RGVG-------ISRLRNVDQQVRQ-QR-ALQRLGVMQP-------------HT--WRP-QRG------LPDSSVLVLRAWLFEHFLHP-------YPKDSDKIMLAR-QTGLSRG---------------QVSNW-FINARVRLWKPM--------VEEMYKEEFTDALQENDPNQSSE-----NTPEITEI-----QEL-----QTESSSN------------------------------------------------------------------------------------------------------------------------------------------------NGHVPGVASSSMRQNTVAHGGDRFMM------VTDMTRN-----------------------------------GNGGMSLTLGIQNSD--------------------------------------------ARGDVPMSGGIDNYKNIISGTDLQYLNSRNHQHQIG---------------------------------SSQLLHDFVA------------------   [482]
'gi|15227193|ref|NP 179233.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|4544389|gb|AAD22299.1| putative home'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATYYKTGSSEIYSRPEFVPGNAM---------------------------------------------NYTNSFTET---------------------------------------FPRDSTNNVSPSKEIQVLSSLGGVSQMVEIQDSGSWRD------------------------------------------------------------------------------------------------------------------------QEDNDRNRFPVMRRLGLSSQIETSRGNNNNEY---------------------------------------------------------------------------------------------------ATQVVSGFTRTIHNSK---------------------------------------------------------YLKAAQELLDETVNVKKALKQFQPEGD--------------------------------------------------------------------------------------------------------KINEVKEKNLQTNT----AEIPQAER---QELQSKLSKLLS------ILDE------------------------VDRNYKQ--YYHQMQIVVSSFDVI-------AGCGAAKPYTALALQTISRHFRCLRDAISGQILVIRKSL---------------------------------------------------------------------------------------------GGEQ-----DGS---DG-----------------------------------------------------------------------------------------------------RGVG-------ISRLRNVDQQVRQ-QR-ALQRLGVMQP-------------HT--WRP-QRG------LPDSSVLVLRAWLFEHFLHP-------YPKDSDKIMLAR-QTGLSRG---------------QVSNW-FINARVRLWKPM--------VEEMYKEEFTDALQENDPNQSSE-----NTPEITEI-----QEL-----QTESSSN------------------------------------------------------------------------------------------------------------------------------------------------NGHVPGVASSSMRQNTVAHGGDRFMM------VTDMTRN-----------------------------------GNGGMSLTLGIQNSD--------------------------------------------ARGDVPMSGGIDNYKNTISGTDLQYLNSRNHQHQIG---------------------------------SSQLLHDFVA------------------   [482]
'gi|22652127|gb|AAN03627.1| BEL1-related homeotic protein 30 [Solanum tuberosum]'                                    -------------MA------------------------------------------TYFPSPNNQRDADQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFQYFRQSLPESYSEASNAPENMM---------------------------------------VFMN---YSSSGAYS---------------------------------------DMLTGTSQQQHNCIDIPSIGATPFNTSQQEILSNLG---------------------------------GSQMGIQDFSSWRDSRNEMLADN------------------------------------------------------------------VFQVAQNVQGQGLSLSLGSNIPSGIGISHVQ---------------------------------SQNPNQGGGFN-MSFGDGD-------------------NSQPKEQRNADYFPPDNPGRDLDAMKGYNSPYGTSSIARTIPSSK---------------------------------------------------------YLKAAQYLLDEVVSVRKAIKEQNSKKELTKD--------------------SRESDVDSKNIS---------------------------------------------------SDTP-------------ANGGSNPHESKNNQ----SELSPTEK---QEVQNKLAKLLS------MLDE------------------------IDRRYRQ--YYHQMQIVVSSFDVV-------AGEGAAKPYTALALQTISRHFRCLRDAICDQIRASRRSL---------------------------------------------------------------------------------------------GEQD-----ASE----N-----------------------------------------------------------------------------------------------------SKAIG------ISRLRFVDHHIRQ-QR-ALQQLGMMQQ-------------HA--WRP-QRG------LPESSVSVLRAWLFEHFLHP-------YPKDSDKIMLAR-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYKEEAGDA--KIDSNSSSD-----VAPRLAT------KDS-----KVEERGELHQNAASE----FEQY--NSGQILESKSNHEADVEME-----GASNAETQSQSG--MENQ------------------------------------------------------------------------------------TGEPLPAMDNCTLFQDAFVQSND--------RFSEFGSF--------------GSGN----------------VLPNGVSLTLGLQQGE-----GSNLPMSIETHVSYVPLRADD-------------------------MYSTAPTTMVPETAEFNCLDSGNRQQPFWLLPSAT-------------------------------------------------------   [645]
'gi|15215857|gb|AAK91472.1| AT4g36870/C7A10 490 [Arabidopsis thaliana] >gi|5764630|gb|AAD51349.1| bel1-like homeodomain 2 [Arabi'    -------------MG------------------------------------------ITKTSPNTTILLKTFHNNSMSQDYHHHHHHNQHQGGIFNFSNGFDRSDSPNLTTQQKQEHQRVEMDEESSVAGGR-------------IPVYESAGMLSEMFNFPGSS-GGGRDLDLGQSFRSNRQLLEEQHQNIPAMNATDSATATAAA---------------------------------------------------------MQL---------------------------------------FLMNPPPPQQPPSPS---------------------------------------STTSPRSHHNSSTLHMLLPSPSTNTTHHQNYTNHMS---------------------------------MHQLPHQHHQQISTWQSSPDHHHHHHNSQTEIGTV------------------------------------------------------HVENSGGHGGQGLSLSLSSSLEAAAKAEEYRNIYYGA-----NSSNASP-HHQYNQFKTLL---ANSSQHHHQVL-NQF---R--------------SSPAASSS------------------------------SMAAVNILRNSR---------------------------------------------------------YTTAAQELLEEFCSVGRGFLKKNKLG---------------------------------------------------------------------------------------------NSSNPNTCGGDGGGSSPSSAGANKEH----PPLSASDR---IEHQRRKVKLLT------MLEE------------------------VDRRYNH--YCEQMQMVVNSFDIV-------MGHGAALPYTALAQKAMSRHFRCLKDAVAAQLKQSCELL---------------------------------------------------------------------------------------------GDKD-----AAGISSSG-----------------------------------------------------------------------------------------------------LTKGE------TPRLRLLEQSLRQ-QR-AFHQMGMMEQ-------------EA--WRP-QRG------LPERSVNILRAWLFEHFLHP-------YPSDADKHLLAR-QTGLSRN---------------QVSNW-FINARVRLWKPM--------VEEMYQQESKER--ER-E-EELE-----ENE------------------EDQETKN---SNDDK----STKSNNNES---------------------NFTAVRTTSQTP--TTTA---------PDASDADAAVATGHRLRSNINAYENDASSLLLPSSYSNAAAPAAVSDDLNSRYG---------------------GSDAFSAVATC---------------------QQSVGGF--------------DDADMDGVNVIRFGT-----NPTGDVSLTLGLRHAG-----NMP-----------------------------------------------------------------DKDASF----------------------------------CVREFGGF--------------------   [739]
'gi|22652117|gb|AAN03622.1| BEL1-related homeotic protein 11 [Solanum tuberosum]'                                    -------------MT------------------------------------------FRSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPLDLREISTTNHQVGILSSSPLPSPGTNTNN---------------------------------------INHT-RGLGASS--------------SFSISNGM-------------------------------------ILGSK---------------------------------------------------------YLKVAQDLLDEVVNVGKNIKLSDG---------------------------LESGAKEKHKLD---------------------------------------------------NELISLASD--------DVES---SSQKNSG----VELTTAQR---QELQMKKAKLVS------MLDE------------------------VDQRYRQ--YHHQMQMIATSFEQT-------TGIGSSKSYTQLALHTISKQFRCLKDAISGQIKDTSKTL---------------------------------------------------------------------------------------------GEEE-----NIG-----------------------------------------------------------------------------------------------------------GKIE------GSKLKFVDHHLRQ-QR-ALQQLGMMQT-------------NA--WKP-QRG------LPERAVSVLRAWLFEHFLHP-------YPKDSDKIILAK-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYMEEVKKN--NQ-E-QNIE-----PN-------------N-----NEIVGSK---SSVPQ----EKLP--ISSNIIHNASPNDI----------STSTISTSPTGG--GGSI---------PTQTVAGFSFIRSLNMENID-D----QRNNKKARN-EMQNCSTSTILSMEREIINKVVQDETIKSEKFNNTQ---TRECYSLMTPN----------YTMDDQFG-------TRF--------------NNQNHEQLATTTTFH-----QGNGHVSLTLGLPPNS-----ENQ-----H-----------------NYIGLENHY---------------NQPTHHPNISY-ENIDFQSG-KRY----------------------------------ATQLLQDFVS------------------   [535]
'gi|22652125|gb|AAN03626.1| BEL1-related homeotic protein 29 [Solanum tuberosum]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QGLSLSLSSSQQP-----------------------------------------GFGNFTAAREL-VSS--PS--------------GSASASGIQQQQQQ------------------------QQSISSVPLSSK---------------------------------------------------------YMKAAQELLDEVVNVGKSMKSTN----------------------------STDVVVNNDVKK---------------------------------------------------SKNMGDMDG--------QLDGVGADKDGAPT----TELSTGER---QEIQMKKAKLVN------MLDE------------------------VEQRYRH--YHHQMQSVIHWLEQA-------AGIGSAKTYTALALQTISKQFRCLKDAIIGQIRSASQTL---------------------------------------------------------------------------------------------GEED-----SLG-----------------------------------------------------------------------------------------------------------GKIE------GSRLKFVDNQLRQ-QR-ALQQLGMIQH-------------NA--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPKDSDKMMLAK-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYLEEIKEH--EQ-NGLGQE-----KTSK-LG------EQN-----EDSTTSR---SIATQ----DKSP--GSDSQNKSFVSKQDNHLPQHNPASPMPDVQRHFHTP--IGMT---------IRNQSAGFNLIGSPEIESINIT----QGSPKKPRN-NEMLHSPNSIPSINMDVKP---NEEQMSMKFGDDRQ---DRDGFSLMGGP----------MNFMGGFGAYPIGEIARF--------------ST----EQF-SAPYS------TSGTVSLTLGLPHNE-----NLSMSATHHSFLPIPTQNIQIGSEPNHEFGSLNTP-----------------TSAHSTSSVYETFNIQNR-KRF----------------------------------AAPLLPDFVA------------------   [567]
'gi|42528295|gb|AAS18416.1| benzothiadiazole-induced homeodomain protein 1; BTH-induced homeodomain protein 1 [Oryza sativa (ind'    -------------MA------------------------------------------TYYSSPGNERDSQAMYPADSGNSSYPVPSA---------------------------------------------------------------------------------------------------------IGNMLYPGNGSSGPYTEFSGI-----------------------------------------------IQHQQNF---------------------------------------MEL--PGHPTAISQD---------------------------------------SSSREPNMVASYTDQRSFGPAKDMRNEMLMHLMDGA---------------------------------HNA------------GADLIHNDTHSSAQIEFGLLNNH---------------------------------------------------NSMSVAPAPGQGLSLSLNTHILAPSYPYWS----------------------------------AKTELLTPHSY-H----GD--------------DNRMKNMQ-------------------------------SEASQAIRNSK---------------------------------------------------------YLKAAQELLDEVVSVWKSIKQKAQKD-Q-----------------------AEAGKSDNKEAE---------------------------------------------------GGSKGE-----------GVSSNPQESTANAA----PEISAAEK---QELQNKMAKLMA------MLDE------------------------VDRKYKH--YYHQMQIVVSSFDMV-------AGSGAAKPYTAVALQTISKHFRCLKDAINDQINVIRKKL---------------------------------------------------------------------------------------------GEEE-----SSS----------------------------------------------------------------------------------------------------------GKEGK------LTRLRYIDQQLRQ-QR-AFQQYGLLQQ-------------NA--WRP-QRG------LPENSVSILRAWLFEHFLHP-------YPKDSEKLMLAR-QTGLTRS---------------QISNW-FINARVRLWKPM--------IEDMYKEEIGEA--DLDSNSSSD-----NVP--------------------RSKDK---IATSE----DKEDLKSSMSQT------------------YQPSQLGESKAN--IGMMSLGGAPAGFHNEGNQDDSFMNLML------------------------------------------------------------KDQRPGEAEGS-LLHDAVAHHSDENARFMAYHLSGLGRY-----------------------------------GNGNVSLTLGLQHPD-----NRL------------------------SVQNTHQPGFAGAGE-EIYNSTASLGVAAASSSDYESTNQIDQRQR---------------------------------FEPSPLMHDFVA------------------   [642]
'gi|57164488|gb|AAW34245.1| putative homeodomain protein [Oryza sativa (japonica cultivar-group)]'                                   -------------MA------------------------------------------TYYSSPGNERDSQAMYPADSGNSSYPVPSA---------------------------------------------------------------------------------------------------------IGNMLYPGNGSSGPYTEFSGI-----------------------------------------------IQHQQNF---------------------------------------MEL--PGHPTAISQD---------------------------------------SSSREPNMVASYMDQRSFGPAKDMRNEMLMHLMDGA---------------------------------HNA------------GADLIHNDTHSSAQIEFGLLNNH---------------------------------------------------NSMSVAPAPGQGLSLSLNTHILAPSYPYWS----------------------------------AKTELLTPHSY-H----GD--------------DNRMKNMQ-------------------------------SEASQAIRNSK---------------------------------------------------------YLKAAQELLDEVVSVWKSIKQKAQKD-Q-----------------------AEAGKSDNKEAE---------------------------------------------------GGSKGE-----------GVSSNPQESTANAA----PEISAAEK---QELQNKMAKLMA------MLDE------------------------VDRKYKH--YYHQMQIVVSSFDMV-------AGSGAAKPYTAVALQTISKHFRCLKDAINDQINVIRKKL---------------------------------------------------------------------------------------------GEEE-----SSS----------------------------------------------------------------------------------------------------------GKEGK------LTRLRYIDQQLRQ-QR-AFQQYGLLQQ-------------NA--WRP-QRG------LPENSVSILRAWLFEHFLHP-------YPKDSEKLMLAR-QTGLTRS---------------QISNW-FINARVRLWKPM--------IEDMYKEEIGEA--DLDSNSSSD-----NVP--------------------RSKDK---IATSE----DKEDLKSSMSQT------------------YQPSQLGESKAN--IGMMSLGGAPAGFHNEGNQDDSFMNLML------------------------------------------------------------KDQRPGEAEGS-LLHDAVAHHSDENARFMAYHLSGLGRY-----------------------------------GNSNVSLTLGLQHPD-----NRL------------------------SVQNTHQPGFAGAGE-EIYNSTASLGVAAASSSDYESTNQIDQRQRSSCRIEAAVWLPQAQGLGSCIFFVRVNAPCCCHVGPGTMASLWVR------------------   [675]
'gi|34897010|ref|NP 909851.1| putative homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|12656811|gb|AAK00972.1|'     -------------MA------------------------------------------TYYSSPGNERDSQAMYPADSGNSSYPVPSA---------------------------------------------------------------------------------------------------------IGNMLYPGNGSSGPYTEFSGI-----------------------------------------------IQHQQNF---------------------------------------MEL--PGHPTAISQD---------------------------------------SSSREPNMVASYMDQRSFGPAKDMRNEMLMHLMDGA---------------------------------HNA------------GADLIHNDTHSSAQIEFGLLNNH---------------------------------------------------NSMSVAPAPGQGLSLSLNTHILAPSYPYWS----------------------------------AKTELLTPHSY-H----GD--------------DNRMKNMQ-------------------------------SEASQAIRNSK---------------------------------------------------------YLKAAQELLDEVVSVWKSIKQKAQKD-Q-----------------------AEAGKSDNKEAE---------------------------------------------------GGSKGE-----------GVSSNPQESTANAA----PEISAAEK---QELQNKMAKLMA------MLDE------------------------VDRKYKH--YYHQMQIVVSSFDMV-------AGSGAAKPYTAVALQTISKHFRCLKDAINDQINVIRKKL---------------------------------------------------------------------------------------------GEEE-----SSS----------------------------------------------------------------------------------------------------------GKEGK------LTRLRYIDQQLRQ-QR-AFQQYGLLQQ-------------NA--WRP-QRG------LPENSVSILRAWLFEHFLHP-------YPKDSEKLMLAR-QTGLTRS---------------QISNW-FINARVRLWKPM--------IEDMYKEEIGEA--DLDSNSSSD-----NVP--------------------RSKDK---IATSE----DKEDLKSSMSQT------------------YQPSQLGESKAN--IGMMSLGGAPAGFHNEGNQDDSFMNLML------------------------------------------------------------KDQRPGEAEGS-LLHDAVAHHSDENARFMAYHLSGLGRY-----------------------------------GNSNVSLTLGLQHPD-----NRL------------------------SVQNTHQPGFAGAGE-EIYNSTASLGVAAASSSDYESTNQIDQRQR---------------------------------FEPSPLMHDFVA------------------   [642]
'gi|62896427|emb|CAD89693.1| BEL1-like homeodomain protein HB2 [Oryza sativa (japonica cultivar-group)]'                             -------------MA------------------------------------------TYYSSPGNERDSQAMYPADSGNSSYPVPSA---------------------------------------------------------------------------------------------------------IGNMLYPGNGSSGPYTEFSGI-----------------------------------------------IQHQQNF---------------------------------------MEL--PGHPTAISQD---------------------------------------SSSREPNMVASYMDQRSFGPAKDMRNEMLMHLMDGA---------------------------------HNA------------GADLIHNDTHSSAQIEFGLLNNH---------------------------------------------------NSMSVAPAPGQGLSLSLNTHILAPSYPYWS----------------------------------AKTELLTPHSY-H----GD--------------DNRMKNMQ-------------------------------SEASQAIRNSK---------------------------------------------------------YLKAAQELLDEVVSVWKSIKQKAQKD-Q-----------------------AEAGKSDNKEAE---------------------------------------------------GGSKGE-----------GVSSNPQESTANAA----PEISAAEK---QELQNKMAKLMA------MLDE------------------------VDRKYKH--YYHQMQIVVSSFDMV-------AGSGAAKPYTAVALQTISKHFRCLKDAVNDQINVIRKKL---------------------------------------------------------------------------------------------GEEE-----SSS----------------------------------------------------------------------------------------------------------GKEGK------LTRLRYIDQQLRQ-QR-AFQQYGLLQQ-------------NA--WRP-QRG------LPENSVSILRAWLFEHFLHP-------YPKDSEKLMLAR-QTGLTRS---------------QISNW-FINARVRLWKPM--------IEDMYKEEIGEA--DLDSNSSSD-----NVP--------------------RSKDK---IATSE----DKEDLKSSMSQT------------------YQPSQLGESKAN--IGMMSLGGAPAGFHNEGNQDDSFMNLML------------------------------------------------------------KDQRPGEAEGS-LLHDAVAHHSDENARFMAYHLSGLGRY-----------------------------------GNSNVSLTLGLQ------------------------------------------------------------------------------------------------------------------------------------------------   [579]
'gi|31323447|gb|AAP47025.1| bell-like homeodomain protein 2 [Lycopersicon esculentum]'                                    -------------MY------------------------------------------YQGTSDN-NIQ------ADHHQQQHNNLGN-------------------------------------------------------------------------------------------SNNNI---------------------------------------------------------------------------------QTL---------------------------------------YLMNPNSYMQGYTTT---------------------------------------DTQQHLQQQQNQHQLLFLNSAPAGGNALSHANIQHA---------------------------------PLQ--QQHFVGVPLP-----AVSLHDQIN-------HHGLLQRMWNNQDQSQQVIVPSSTVVSATSCGGTTTDLASQLAFQRPIVVSPTPQHRQQQQQQGGLSLSLSPQQQQ-----------QI----------------------------SFNNNI-----------SS--------------SSPRTNNVTIRGTM------------------------DGCSSNMILGSK---------------------------------------------------------YLKAAQELLDEVVNIVGKSNKGDDQK-------------------------------KDNSMN---------------------------------------------------KELIPLVSDVNTNSSGGGGGESSSRQKNEVA----IELTTAQR---QELQMKKAKLLA------MLEE------------------------VEQRYRQ--YHHQMQIIVSSFEQV-------AGVGSAKSYTQLALHAISKQFRCLKDAISEQVKATSKSL---------------------------------------------------------------------------------------------GEDE-----GLG-----------------------------------------------------------------------------------------------------------GKIE------GSRLKFVDHHLRQ-QR-ALQQLGMMQP-------------NA--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPKDSDKIMLAK-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYLEEVKNQ--EQ-N-SSNT-----SGD------------N-----KNKETNI---SAPNE----EKQPIITSSLLQDG--TTQAEI--------STSTISTSPTAG--ASL------------HHAHNFSFLGSFNMENTTTTVDHIENNAKKPRNHDMHKFSPSSILS-------------SVEMEAKARES---TNKGFT------------------NPLMAAYAMGDFGRF--------------DP--HDQQM-TANFH------GNNGVSLTLGLPPSE-----NLAMPVSQQNYLS-------------NELGSRPEI-----------------GSHYNRMGY-ENIDFQSGNKRF----------------------------------PTQLLPDFVTGNLGT-------------   [699]
'gi|77557176|gb|ABA99972.1| hypothetical protein LOC Os12g43950 [Oryza sativa (japonica cultivar-group)] >gi|77557175|gb|ABA9997'    -------------MA------------------------------------------TYYSSPGSERDSQTMYSRDPGSASYPMSSA---------------------------------------------------------------------------------------------------------LGNLLYLNNPSSGPYTEFSGI-----------------------------------------------LQPQQNC---------------------------------------MEMPGPGHASAMSQD---------------------------------------PSSRESDMLSSHQGQRSFSHVKDMKNEMLMHMMDGA---------------------------------QGS------------GSELIHDDAHTGSQLEFGVLNNH---------------------------------------------------NSSSVPSMQSQGLSLSLNTQIMAPSLPYWS----------------------------------IKPDMLTPQSY-HDNLRGE--------------DMRMKNLQ-------------------------------SEASRAIRNSR---------------------------------------------------------YLKAAQELLDEVVSVWKSIKQKAQKE-K-----------------------VESGKADGKETD---------------------------------------------------GGPKSE-----------GVSSNPQESGANAA----PELSTAEK---QELQNKMAKLMA------MLDE------------------------VDRKYKH--YYHQMQTVVSSFDVV-------AGPGSAKPYTAVALQTISRHFRCLKDAINDQINVIRKKL---------------------------------------------------------------------------------------------GEEE-----NSS----------------------------------------------------------------------------------------------------------GKEGK------LTRLRYIDQQLRQ-QR-AFQQYGMIPQ-------------NA--WRP-QRG------LPENSVTILRAWLFEHFLHP-------YPKDSEKLMLAR-QTGLTRS---------------QISNW-FINARVRLWKPM--------IEDMYKEEIGDL--EQDSNSSSD-----NAP--------------------RSKDK---MASSE----DKEDLKNSRARI------------------CETSQLSESRTS--IGAMNVGGAPVGFQNEPNPDDSFMNLML------------------------------------------------------------KDQRSNEVDGGLLLHNTVAQHSDENARFMAYHLAELGRY-----------------------------------GNGNVSLTLGLQHSS-----SNL-------------------------VPNA-QPGFPGVNEDDIYNATAPLGVTVA-SSDYDSMNQMDQRQR---------------------------------FEHSPLLHDFVA------------------   [647]
'gi|15236156|ref|NP 195187.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|45773948|gb|AAS76778.1| At4g34610 [A'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MENYPETQFIPGDSM---------------------------------------IQNAIVSYSEESAGR---------------------------------------ERRTEANNVSASQERQALSRFGGVPQMQNI--------------------------------------------GQDFGSWRDQASDRNGFQLMSAM-------------------------------------------------------------AGATGILQTGQGLSLSLGSQILPGIHQISHQN-------------------------------------------------------------------------------------MAPRGNEYATQSFPGGNQNLDVVRTIPNSK---------------------------------------------------------YLKAAQQLLDEAVNVKKALKQFQAEGDKNNENPQ-------------------------------------------------------------------------------------------------EPNQSTQDSSTNPP----ADISQSER---QEMQSKLTKLLS------MLDE------------------------VDRRYKQ--YYQQMQIVVSSFDVI-------AGYGAAKPYTALALQTISRHFRSLRDAISGQILVLRKCL---------------------------------------------------------------------------------------------GEQQ-----DGS---DG-----------------------------------------------------------------------------------------------------KRVGI------ISRLKYVDQHLRQ-QR------GFMQP-------------QA--WRP-QRG------LPENSVLILRAWLFEHFLHP-------YPKDSDKIMLAR-QTGLSRG---------------QVSNW-FINARVRLWKPM--------VEEIYKEEFTEN----DSNSSSE-----NTPKMSE------IGP-----VAADDEDRAREFSQD----QTKPD-------------------------------------------------------------------------------------------------------------------------------HGHGYGEETRGMVQGS-HMDGRRFMAVEPTYHVADTSRL-----------------------------------GRGDVSLTLGLQNSQ-----GQDNVVAMSSEAYNNFSGVDI-------------------------------YENAIPGDEMEYVNPGSRQNRIN---------------------------------SSQLVHDFVA------------------   [532]
'gi|22652115|gb|AAN03621.1| BEL1-related homeotic protein 5 [Solanum tuberosum]'                                    -------------MY------------------------------------------YQGTSDNTNIQ------AD-HQQRHNHGNS-------------------------------------------------------------------------------------------NNNNI---------------------------------------------------------------------------------QTL---------------------------------------YLMNPNNYMQGYTTS---------------------------------------DTQQ-------QQQLLFLNSSPAASNALCHANIQHA---------------------------------PLQ--QQHFVGVPLP-----AVSLHDQIN-------HHGLLQRMWNNQDQSQQVIVPSSTGVSATSCGGITTDLASQLAFQRPI---PTPQHRQQQQQQGGLSLSLSPQLQQ-----------QI----------------------------SFNNNI-----------SS--------------SSPRTNNVTIRGTL------------------------DGSSSNMVLGSK---------------------------------------------------------YLKAAQELLDEVVNIVGKSIKGDDQK-------------------------------KDNSMN---------------------------------------------------KESMPLASDVNTNSS--GGGESSSRQKNEVA----VELTTAQR---QELQMKKAKLLA------MLEE------------------------VEQRYRQ--YHHQMQIIVLSFEQV-------AGIGSAKSYTQLALHAISKQFRCLKDAIAEQVKATSKSL---------------------------------------------------------------------------------------------GEEE-----GLG-----------------------------------------------------------------------------------------------------------GKIE------GSRLKFVDHHLRQ-QR-ALQQIGMMQP-------------NA--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPKDSDKIMLAK-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYLEEVKNQ--EQ-N-STNT-----SGD------------N-----KNKETNI---SAPNE----EKHPIITSSLLQDGITTTQAEI--------STSTISTSPTAG--ASL------------HHAHNFSFLGSFNMDNTTTTVDHIENNAKKQRN-DMHKFSPSSILS-------------SVDMEAKARES---SNKGFT------------------NPLMAAYAMGDFGRF--------------DP--HDQQM-TANFH------GNNGVSLTLGLPPSE-----NLAMPVSQQNYLS-------------NDLGSRSEM-----------------GSHYNRMGY-ENIDFQSGNKRF----------------------------------PTQLLPDFVTGNLGT-------------   [688]
'gi|15234555|ref|NP 195405.1| BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor [Arabidopsis thaliana] >gi|7932'    -------------MG------------------------------------------ITKTSPNTTILLKTFHNNSMSQDYHHHHHHNQHQGGIFNFSNGFDRSDSPNLTTQQKQEHQRVEMDEESSVAGGR-------------IPVYESAGMLSEMFNFPGSS-GGGRDLDLGQSFRSNRQLLEEQHQNIPAMNATDSATATAAA---------------------------------------------------------MQL---------------------------------------FLMNPPPPQQPPSPS---------------------------------------STTSPRSHHNSSTLHMLLPSPSTNTTHHQNYTNHMS---------------------------------MHQLPHQHHQQISTWQSSPDHHHHHHNSQTEIGTV------------------------------------------------------HVENSGGHGGQGLSLSLSSSLEAAAKAEEYRNIYYGA-----NSSNASP-HHQYNQFKTLL---ANSSQHHHQVL-NQF---R--------------SSPAASSS------------------------------SMAAVNILRNSR---------------------------------------------------------YTTAAQELLEEFCSVGRGFLKKNKLG---------------------------------------------------------------------------------------------NSSNPNTCGGDGGGSSPSSAGANKEH----PPLSASDR---IEHQRRKVKLLT------MLEE------------------------VDRRYNH--YCEQMQMVVNSFDIV-------MGHGAALPYTALAQKAMSRHFRCLKDAVAAQLKQSCELL---------------------------------------------------------------------------------------------GDKD-----AAGISSSG-----------------------------------------------------------------------------------------------------LTKGE------TPRLRLLEQSLRQ-NR-AFHQMG-MEQ-------------EA--WRP-QRG------LPERSVNILRAWLFEHFLHP-------YPSDADKHLLAR-QTGLSRN---------------QVSNW-FINARVRLWKPM--------VEEMYQQESKER--ER-E-EELE-----ENE------------------EDQETKN---SNDDK----STKSNNNES---------------------NFTAVRTTSQTP--TTTA---------PDASDADAAVATGH------------------PSK----------------------------------------------------------------------------------------------------------------------------IQH-----------------------------------------------------------------------------------------------------------------------------------------------   [638]
'gi|15222227|ref|NP 177674.1| BLH3 (BEL1-like homeodomain 3); DNA binding / transcription factor [Arabidopsis thaliana] >gi|4705'    -------------MA------------------------------------------VYYPNSVGMQSLYQESIYLNEQQQQQQQAS-----------------------------------------------------------------------------------------------------------------SSSAASFSEIVSG-----------------------------------------------DVRNNEM---------------------------------------VFIPP-TSDVAVNGN---------------------------------------VTV-----------------------------------------------------------------------------------------------------------------------------------------------------------SSNDLSFHGG-GLSLSLGNQIQSAVSVSPFQ---------------------------------YHYQNLSNQLS-YNNLNPSTMSDENG----KSLSVHQHHS---DQILPSSVYNNNGNNGVGFYNNYRYE--TSGFVSSVLRSR---------------------------------------------------------YLKPTQQLLDEVVSVRKDL-KLG----------------------------NKKMKNDKGQDF---------------------------------------------------HNGSSD---------------NITEDDKSQS----QELSPSER---QELQSKKSKLLT------MVDE------------------------VDKRYNQ--YHHQMEALASSFEMV-------TGLGAAKPYTSVALNRISRHFRCLRDAIKEQIQVIRGKL---------------------------------------------------------------------------------------------GER--------ETSDEQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSILRAWLFEHFLHP-------YPKESEKIMLSK-QTGLSKN---------------QVANW-FINARVRLWKPM--------IEEMYKEEFGES--AELLSNSNQ-----DTKK-MQ------ETS-----QLKHEDS---SSSQQ----QNQGNNNN-NIPYTSDAEQNLVF-ADPKPDRA----------------------------------------------------------------------------------------------------TTGDYDSLMNY-----------------------------------------------------HGFG-----IDDYNRYVGLGNQQDG-----RYS---------------------------------------------------------------------------------------------------------NPHQLHDFVV------------------   [524]
'gi|23197850|gb|AAN15452.1| Similar to homeodomain proteins [Arabidopsis thaliana] >gi|17064938|gb|AAL32623.1| Similar to homeod'    -------------MA------------------------------------------VYYPNSVGMQSLYQESIYLNEQQQQQQQAS-----------------------------------------------------------------------------------------------------------------SSSAASFSEIVSG-----------------------------------------------DVRNNEM---------------------------------------VFIPP-TSDLAVNGN---------------------------------------VTV-----------------------------------------------------------------------------------------------------------------------------------------------------------SSNDLSFHGG-GLSLSLGNQIQSAVSVSPFQ---------------------------------YHYQNLSNQLS-YNNLNPSTMSDENG----KSLSVHQHHS---DQILPSSVYNNNGNNGVGFYNNYRYE--TSGFVSSVLRSR---------------------------------------------------------YLKPTQQLLDEVVSVRKDL-KLG----------------------------NKKMKNDKGQDF---------------------------------------------------HNGSSD---------------NITEDDKSQS----QELSPSER---QELQSKKSKLLT------MVDE------------------------VDKRYNQ--YHHQMEALASSFEMV-------TGLGAAKPYTSVALNRISRHFRCLRDAIKEQIQVIRGKL---------------------------------------------------------------------------------------------GER--------ETSDEQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSILRAWLFEHFLHP-------YPKESEKIMLSK-QTGLSKN---------------QVANW-FINARVRLWKPM--------IEEMYKEEFGES--AELLSNSNQ-----DTKK-MQ------ETS-----QLKHEDS---SSSQQ----QNQGNNNN-NIPYTSDAEQNLVF-ADPKPDRA----------------------------------------------------------------------------------------------------TTGDYDSLMNY-----------------------------------------------------HGFG-----IDDYNRYVGLGNQQDG-----RYS---------------------------------------------------------------------------------------------------------NPHQLHDFVV------------------   [524]
'gi|15223627|ref|NP 173400.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|45827244|gb|AAS78200.1| BEL1-like ho'    -------------MA------------------------------------------VYYTSNVGCYQ--QEPIFLNHQQQNQQASS-----------------------------------------------------------------------------------------------------------------SSAAASFT-VTGG-----------------------------------------------DTVRNEM---------------------------------------VFIPPTTTGDVVTGN---------------------------------------GTV-----------------------------------------------------------------------------------------------------------------------------------------------------------SSSDLSFHDGQGLSLSLGTQI----SVAPFH---------------------------------FH----QYQLG-FTSQNPSISVKETSPFHVDEMSVKSKEMILLGQSDPSSGYAGNGGN--GFYNNYRYNETSGGFMSSVLRSR---------------------------------------------------------YLKPAQNLLDEVVSVKKELNQMG----------------------------KKKMKVN---DF---------------------------------------------------NSGSKEIEG--------GG-GELSSDSNGKS----IELSTIER---EELQNKKNKLLT------MVDE------------------------VDKRYNQ--YYHQMEALASSFEIV-------AGLGSAKPYTSVALNRISRHFRALRDAIKEQIQIVREKL---------------------------------------------------------------------------------------------GEKG-----GESLDEQQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSVLRAWLFEHFLHP-------YPKESEKIMLAK-QTGLSKN---------------QVANW-FINARVRLWKPM--------IEEMYKEEFGDE--SELLI----------SKS-SQ------EPN-----STNQEDS---SSQQQ----QQQENNNNSNLAYSSADTTNIVFSSETKPDRVLGNDNDPQQQ--QIN-------------------------------------------------------------------------------------RSSDYDTLMNY-----------------------------------------------------HGFG-----VDDY-RYISGSNQQES-----RFS---------------------------------------------------------------------------------------------------------NSHHLHDFVV------------------   [538]
lcl|Smo_At5g02030_10_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSYLSGQNSAQAEAMQL---------------------------------------FLTGYSGYSDPSTPG--------------------------------GMVLISPSSGSSVQSSQLTGSAPGQSHFIGIPLTQPSLSQQDASGGNGLPSSAFASRGGANSTYNWRNGGDEFLFLPSSEATQQRKSISGEPSGLNQITELSDYALRQPSLSSMLGQQHQQSLLQAGHRLEMDNSH-----------------------------QGAAAGPGYHQSLSLSLSNQNAQLHAREPGMN-----------------------------------------------SPGGSQDAKRGVGKLSGDLSHFRTSPRDGGASYVNLPSSAGTKHSYFDVAGPGPSAVSNSFSFVSGSR---------------------------------------------------------YLRAAQQLLDEVCSVGRGLKQSSKSKGSQQGLGGQSSPAAVTSSLHKEAA-LTENSVKSEITI---------------------------------------------------GSSAVASPGTGPATVSTVAPSTNTAESKENV----SVLTPDER---QEYEGKKTKLLA------MLQEVLSLFFLLLTSNYLLTVASMKNLQVDRRYRQ--YYDQMQVVITSFDAV-------AGAGAATPYTALALQAMSRYFRCLRDAITGQIQTTCKAL---------------------------------------------------------------------------------------------GEED-----VTK---SI-----------------------------------------------------------------------------------------------------TSRPL------TSRLRFIDQQIRQ-QR-AYQQYGMLQQ-------------HA--WRP-QRG------LPERSVSILRAWLFEHFLHP-------YPKDADKMMLAR-QTGLTRG---------------QVSNW-FINARVRLWKPM--------VEEMYQEEIKEQ--EL-GVASAR-----LLADPDE------RHN-----HDGVGGD---SLTSD----RSDRGDMGAGLMQLDGSSE--------------------------------------QQSYASEYGMLASIRKADSVQMFGAADSGAQQVKKTRLGIQDSVGMLADHHHHHHHHHHGHHHHHAGGGLDVEMKSHDGGEGIMCG------VPPPGSLERHFVDYAAAQNGPLHSDHGFDDQSRGFGRTSYGGGFSSQQQQQQQQQYPGSSGVSLTLGLRNHE-----SQLQQLAAAAQQSFLGHQNFLAVSRGHTQHHQQIGGDHGSELCNIYENAAAA?-----------------------------------------------------------------------------------   [846]
'gi|34902566|ref|NP 912629.1| Putative homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|20219036|gb|AAM15780.1|'     ----------------------------------------------MWTLHVILSLFFLPLFPFSLSTSAFCKRRWRQRQRRRRWREGRRWRHWSGGGDGRGPEWRRRFGLELAWMEAEAATEEMAGGRGPERRRVGGEPGGRWWLAGRELVAKAAPIFLPPRRAPHAPAPIGGADYAVGSVPRAAKGGRLGLRGGLTDGDAGLAEEGCGRRATITAEESAVANRTAAGTRLAISTSSNFHKAASAKKKRRSQKKTTRETTQLQESLGSSLSPFWVVSVILQELSCSSSLLGLKVDFCTGTAKALGIVLQKAQQSEAYCPSLSLLLLLKTMATFFSSSTNQRDLTGGGGDGGDMSFQHYPPPSNPYSDSSAGGLIPLPASIVSHSHIAHGGGDEPA--------------------------------------------------------AFREAATADGGEMGLQTQLLM---------------------------------------------AHGAAARGHQGGLSLSLGTQVPVSLYQYRPAG-------------------------------------------------------------------------------------MAAASLLSPSQSSPMAGRSAQNSIYVQNSR---------------------------------------------------------FLRAARELLDEVVNVRDAIKRKGDKNQG-----------------------KDSGECKGGDAA---------------------------------------------------GDD--------------KAGSNPQEQESNSA----PELSPSER---QDLQNKVTALMA------MLDQ------------------------VDRRYRH--YHHQMQIVMSSFDAV-------AGGGAARPYTALALQTISRHFRSLRDAIGAQAQAARRGL---------------------------------------------------------------------------------------------GEQD-----ASA----------------------------------------------------------------------------------------------------------QGGGG------LSRLRYIDQQLRQ-QR-AMQQFGMMQQPQ-----------HA--WRP-QRG------LPESAVSVLRAWLFEHFLHP-------YPKDSEKLMLAR-QTGLSRG---------------QVSNW-FINARVRLWKPM--------IEEMYKEEFGA---EMDSNSSSE-----NGGGGGG------KGK-----DEAISSEDRDEFQSP----SSAAAARHAGVAGQLNNPFKSEAMGGAALDVGVGVVGLSSCL--GGAMGTYATGLNLNH-------------------------------------------------------------------------HVHHPGAGGTSLLHDALHHHHHGGGGDARFVSYGDMADL-----------------------------GGGGGYDGGSVSLTLGLQHCN-----NAGPVPAEQQ------------------------------------------GLLYGSAGDFDYINGSDDRQRFGP--------------------------------ASQLLHDFVA------------------   [884]
'gi|31323443|gb|AAP47023.1| bell-like homeodomain protein 3 [Lycopersicon esculentum]'                                    -------------------------------------------------------------QHETMLATTTTSHQD---SWHHDNN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTL---------------------------------------LVDDPSMRCV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FPCEGNERPSQGLSLSLCSSNPSSIGLQSFE---------------------------------LRHQDLQQGLI-HDGFLGK--------------STSIQQGY-------------------------------FHHYHQVRDSK---------------------------------------------------------YLGPAQELLSEFCSLGIKK--------------------------------------NNDHSS---------------------------------------------------SKLL--------------LKQHDTTATTSKK----QLLQSLDL---LELQKRKTKLLQ------MLEE------------------------VDRRYKH--YCDQMKGVVSSFEAV-------AGNGAATVYSALASRAMSRHFRCLRDGIVAQIKATKMAM---------------------------------------------------------------------------------------------GEKD-----STTTLIPG-----------------------------------------------------------------------------------------------------STRGE------TPRLRLLDQTLRQ-QK-AFQQMNMMET-------------HP--WRP-QRG------LPERSVSVLRAWLFEHFLHP-------YPSDVDKHILAR-QTGLSRS---------------QVSNW-FINARVRLWKPM--------VEEMYLEETKEE--EEENVGSQD-----GSKA-LI------DEM-----TINNHQS---SHI------VQKP--------------------------NLVRIESECISS--IINH---------HPHDKNDQNY--------------------GVIRG----------------------------------------GDQSFGAIELD---------------------FSTNIAY--------------ATNGSDHHHHHHGGG-----GGSGGVSLTLGLQQHG------------------------------GSSMGLTTFSSQPSHHNHNHQSSLFYPRDDHDQVQYSSLLDSENQNLPYRN------------------------------LMGAQLLHDLAG------------------   [523]
'gi|22652121|gb|AAN03624.1| BEL1-related homeotic protein 14 [Solanum tuberosum]'                                    DHGPSSSKNIISEQF------------------------------------------YQHGSHENMLTTTTTHHDDHQGSWHHDNN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTL---------------------------------------LVDDPSMRCV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FPCEGNERPSHGLSLSLCSSNPSSIGLQSFE---------------------------------LRHQDLQQGLI-HDGFLGK--------------STNIQQGY-------------------------------FHHHHQVRDSK---------------------------------------------------------YLGPAQELLSEFCSLGIKK--------------------------------------NNDHSS---------------------------------------------------SKVL--------------LKQHESTASTSKK----QLLQSLDL---LELQKRKTKLLQ------MLEE------------------------VDRRYKH--YCDQMKAVVSSFEAV-------AGNGAATVYSALASRAMSRHFRCLRDGIVAQIKATKMAM---------------------------------------------------------------------------------------------GEKD-----STSTLIPG-----------------------------------------------------------------------------------------------------STRGE------TPRLRLLDQTLRQ-QK-AFQQMNMMET-------------HP--WRP-QRG------LPERSVSVLRAWLFEHFLHP-------YPSDVDKHILAR-QTGLSRS---------------QVSNW-FINARVRLWKPM--------VEEMYLEETK----EEENVGSPD-----GSKA-LI------DDM-----TIHQSHI---DHHQA----DQKP--------------------------NLVRIDSECISS--IINH---------QPHEKNDQNY--------------------GVIRG----------------------------------------GDQSFGAIELD---------------------FSTNIAY--------------GTSGGDHHHH------------GGGVSLTLGLQQHG-----GSG----------------------GSSMGLTTFSSQPSH----NQSSLFYPRDD-DQVQYSSLLDSENQNLPYRN------------------------------LDGGT----TSS------------------   [532]
'gi|77548772|gb|ABA91569.1| homeodomain transcription factor, putative [Oryza sativa (japonica cultivar-group)]'                     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAYYHGGAGTDIQSGTDGLQTL---------------------------------------YLMNPSYAGYG-------------------------------------------DAAAAAAAPGAAANMMLLNSAVTSMTPVSFGHQPSP---------------------------------SSSSAAQHFVGIPLQAPPASGYNLWTPAAATGAGDMSPPTPQHQH--------------------------------------------QQAHGGGAAGVSAVLSLSSREAAPPVTVAAVV----------------------------------------------------------------------------------------AAGDEGKYLQAVAQGAASHGQMVMSSK---------------------------------------------------------YLKAAQELLDEVVSVSKGVDDVKAAAA------------------------AKSPASVKKKED---------------------------------------------------SEGVSGGGT--------EDGGGAKSGGAPPP----PEMSTAER---QELQMKKGKLIN------MLDE------------------------VEQRYRQ--YHQQMQVVVASFEAV-------AGGGSARTYTALALRTISRQFRCLRDAIAGQVRAASRAL---------------------------------------------------------------------------------------------GEAV-----DAD---GG-----------------------------------------------------------------------------------------------------CGRTV------GSRLRYIDHQLRQ-QR-ALQQLGMMQS-------------SA--WRP-QRG------LPERSVSILRAWLFEHFLHP-------YPKDSDKIMLAK-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYLEETKDQ--DGGGGAGAG-----DEGSKPG------GSK-----GGGAGVN---GGVVD----SAAKMDSKAAHMESGGGVHPSLLELAGDHQAQAGFYDDDDED--GGAAAALQQKLKKARTEEQQQAAFHVSDVATLHAHAAAAAAARHDEVSHRELLMK---------------------------------FMESGSAGAGAGAAARDHHHEHHGGVGYSLFAPAPYGQF---------------------ATEQFAFAGHGGGGGGGGVSLTLGLPHGA------------------------------------------EQTASFLMTSSNGSDGAGHVAGGGGYDMNMQSTKSF-----------------------------------AAQLMRDFVA------------------   [678]
'gi|13877517|gb|AAK43836.1| BEL1-like homeodomain 1 [Arabidopsis thaliana]'                                    -------------MA------------------------------------------A----------------------YFHGNPP-------------------------------------------------------------------------------------------E-------------------ISAGSDGGL---------------------------------------------------------QTL---------------------------------------ILMNPTTYVQ-YTQQ---------------------------------------DNDSNNNNNSNNSNNNNTNTNTNNNNSSFVFLDSHA---------------------------------PQPNASQQFVGIPLSGHEAASITAADNISV------LHGYPPRVQYSLYGSHQVDPT------------------------------HQQAACETPRAQQGLSLTLSSQQQQQQQHHQQHQPIHV----------------------------GFGSGHGEDIR-VGSG-ST--------------GSGVTNGI-----------------------------------ANLVSSK---------------------------------------------------------YLKAAQELLDEVVNADSDDMNAKSQLFS-----------------------SKKGSCGNDKPV---------------------------------------------------GESSAGAGG--------EGSGGGAEAAGKRP----VELGTAER---QEIQMKKAKLSN------MLHE------------------------VEQRYRQ--YHQQMQMVISSFEQA-------AGIGSAKSYTSLALKTISRQFRCLKEAIAGQIKAANKSL---------------------------------------------------------------------------------------------GEED-----SVS----G-----------------------------------------------------------------------------------------------------VGRFE------GSRLKFVDHHLRQ-QR-ALQQLGMIQHPS----------NNA--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPKDSDKHMLAK-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYMEEMKEQ--AK-NMGSME-----KTP--LD------QSN-----EDS-ASK---STSNQ----EKSP--MADTNYH-----------------MNPNHNGDLEGV--TGM------------------------------------QGCPKRLRT-S----DETMMQPINADFS----SNEKLTMKILEERQGIRSDGGYPFMGNF-----------------GQYQMDEMSRF--------------DVVSDQELM-AQRYS-----GNNNGVSLTLGLPHCD-----SLS--STDHQGFMQTHHGIPIG----RRVKIGETEEYGPATINGGSSTTTAHSSAAAAAAY-NGMNIQNQ-KRY----------------------------------VAQLLPDFVA------------------   [680]
'gi|30686614|ref|NP 850256.1| BLH1 (BEL1-like homeodomain 1); transcription factor [Arabidopsis thaliana] >gi|15227535|ref|NP 18'    -------------MA------------------------------------------A----------------------YFHGNPP-------------------------------------------------------------------------------------------E-------------------ISAGSDGGL---------------------------------------------------------QTL---------------------------------------ILMNPTTYVQ-YTQQ---------------------------------------DNDSNNNNNSNNSNNNNTNTNTNNNNSSFVFLDSHA---------------------------------PQPNASQQFVGIPLSGHEAASITAADNISV------LHGYPPRVQYSLYGSHQVDPT------------------------------HQQAACETPRAQQGLSLTLSSQQQQQQQHHQQHQPIHV----------------------------GFGSGHGEDIR-VGSG-ST--------------GSGVTNGI-----------------------------------ANLVSSK---------------------------------------------------------YLKAAQELLDEVVNADSDDMNAKSQLFS-----------------------SKKGSCGNDKPV---------------------------------------------------GESSAGAGG--------EGSGGGAEAAGKRP----VELGTAER---QEIQMKKAKLSN------MLHE------------------------VEQRYRQ--YHQQMQMVISSFEQA-------AGIGSAKSYTSLALKTISRQFRCLKEAIAGQIKAANKSL---------------------------------------------------------------------------------------------GEED-----SVS----G-----------------------------------------------------------------------------------------------------VGRFE------GSRLKFVDHHLRQ-QR-ALQQLGMIQHPS----------NNA--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPKDSDKHMLAK-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYMEEMKEQ--AK-NMGSME-----KTP--LD------QSN-----EDS-ASK---STSNQ----EKSP--MADTNYH-----------------MNPNHNGDLEGV--TGM------------------------------------QGSPKRLRT-S----DETMMQPINADFS----SNEKLTMKILEERQGIRSDGGYPFMGNF-----------------GQYQMDEMSRF--------------DVVSDQELM-AQRYS-----GNNNGVSLTLGLPHCD-----SLS--STHHQGFMQTHHGIPIG----RRVKIGETEEYGPATINGGSSTTTAHSSAAAAAAY-NGMNIQNQ-KRY----------------------------------VAQLLPDFVA------------------   [680]
'gi|67633542|gb|AAY78695.1| homeodomain-containing protein [Arabidopsis thaliana] >gi|25407870|pir||C84670 probable homeodomain'     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAFFLGESEMREHSSDLFMMTLNPFREQTTTTNAHDDHFYNLCFGSQQYRPRDEVGHIE----------------------------------------------------------------------------------------------QGNSSISTFSNGGVFRALAPI---------------------------------------------------------YLKAAQELLNEIVNVGNGSHGAKQERPV----------------------------------------------------------------------------------------------------------------SKESTIYGVEDINGGYKPGVAALQMKKAKLIS------MGEM------------------------VEQRYKQ--YHDQMQTIISSFEQA-------AGLGSANSYTHMALQTISKQFRAVKDMISLQIKQINKLL---------------------------------------------------------------------------------------------GQKE-----------------------------------------------------------------------------------------------------------------------------------FDEQLKK-----LGKMAHHHS-------------NA--WRP-QRG------LPEKAVSVLRSWLFEHFLHP-------YPRDLDKVMLAK-QTGLTKS---------------QVSNW-FINARVRMWKPL--------VEELYSEEMDIE--ESRKGSDRY-----STKGSSS------KQP-----YNNTTSNESSNTILP----AFRQGFTETETPRQNSSSSCSVVMRFTK-------------------------------------------------------------------------------------------------------------------------------------------------------------QHMNQANFINFNGGFENYHTMDGNSVSLSLGLPHSCDQTFNNIHFESTSHGTENSAIYSSSTYQIMD--------------------------------------------------------------------------------------------------------------   [431]
'gi|15225858|ref|NP 180290.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|20198249|gb|AAM15481.1| putative hom'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAFFLGESEMREHSSDLFMMTLNPFREQTTTTNAHDDHFYNLCFGSQQYRPRDEVGHIE----------------------------------------------------------------------------------------------QGNSSISTFSNGGVFRALAPI---------------------------------------------------------YLKAAQELLNEIVNVGNGSHGAKQERPV----------------------------------------------------------------------------------------------------------------SKESTIYGVEDINGGYKPGVAALQMKKAKLIS------MGEM------------------------VEQRYKQ--YHDQMQTIISSFEQA-------AGLGSANSYTHMALQTISKQFRAVKDMISLQIKQINKLL---------------------------------------------------------------------------------------------GQKE-----------------------------------------------------------------------------------------------------------------------------------FDEQLKK-----LGKMAHHHS-------------NA--WRP-QRG------LPEKVVSVLRSWLFEHFLHP-------YPRDLDKVMLAK-QTGLTKS---------------QVSNW-FINARVRMWKPL--------VEELYSEEMDIE--ESRKGSDRY-----STKGSSS------KQP-----YNNTTSNESSNTILP----AFRQGFTETETPRQNSSSSCSVVMRFTK-------------------------------------------------------------------------------------------------------------------------------------------------------------QHMNQANFINFNGGFENYHTMDGNSVSLSLGLPHSCDQTFNNIHFESTSHGTENSAIYSSSTYQIMD--------------------------------------------------------------------------------------------------------------   [431]
'gi|55775090|ref|XP 550471.1| putative homeotic protein BEL1 [Oryza sativa (japonica cultivar-group)] >gi|81686894|dbj|BAE48304.'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAHHHHHEHHHLLDMSSPPNASGAIISSFDHAAGLLSLHDVAAAADHHHHHLRGGGG-------------------------------------------------------GLQLPSPWSQQQVSLSLYNNAAGAA-----------------------------------------------------------------------------------------------GSPPSSLVAHQQLAAAQPLMFQLRGSK---------------------------------------------------------YLGPVKALLAEFCSLDVEAMDGAKQQRPPNPNPKI------------------------------------------------------------------------------------------------GKWDDVEGSGSWGN----LSLSSMDL---LDLERRKARILS------MVEE------------------------VDRRYRR--YREQMRAVEVSFEAV-------AGGGAAQVYTKLAMRAMSRHFRCLRDALVGQVRALRNAM---------------------------------------------------------------------------------------------GESQRDAAGGVAAAAPG-----------------------------------------------------------------------------------------------------ATKGD------TPRLRVLDQCLRQ-QR-AFQQSGAVDS-------------FP--WRP-QRG------LPERAVAVLRAWLFEHFLHP-------YPNDVDKHILAR-QTGLSRS---------------QVSNW-FINARVRLWKPM--------IEDMYKEETKPE--SSDGNNKLN-----PSAAGNK------QQH-----RDDPKKNYTATTAEA----SLVQQSSYHLHLRSSGNRNSSSLMIPAAASTSIDHHHDSSHQ--LLGGHSYSSAAGLHH--------------------------------------------------------------------------------------------------------------------------------------------------GHGGAVSLTLGLQQQQ-----QPFAASMMHQHQQHQHQHQQQ-------------------------------QSFMVEAAEEEEDDVLPYRNLM----------------------------------ESQLLHDFAGAS----------------   [529]
'gi|37536420|ref|NP 922512.1| putative homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|22002143|gb|AAM88627.1|'     -------------MAHD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSLGYADYFAAEVDGTGATELYGLQQHQQGVGVAEMFGVRGLMPAAHAHEQSKGVGALVVGGGGVDDGGATTLPTVHFGGLGE---------------------------------------------------------------------------LHHHQHRQSQAPLSLSLHRPEAAATSLLMQQQ----------------------------------QQHLHHQPS-PPAGAAS-------------------------------------------------TWQLQQGAWHLRGSR---------------------------------------------------------FLLPTQQLLQEFCSLPVKSTTSPSSA-------------------------SKATKPPQE-----------------------------------------------------------------------EAASGGGSSSWTAP----TQIQSMDA---AELQRLKGKLYT------MLEE------------------------VDRRYRR--YCEQMRALAASFEAV-------AGERAAASYTRLASRTISRHFRSLRDGVVAQLQAVRKQL---------------------------------------------------------------------------------------------GEKD-----TAV---PG-----------------------------------------------------------------------------------------------------MTKGE------TPRLRVLDQCLRQ-HK-AYQA-GMLES-------------HP--WRP-QRG------LPERAVSILRAWLFEHFLHP-------YPSDVDKHILAR-QTGLSRS---------------QVANW-FINARVRLWKPM--------VEEMYAEEMKDE--EGSGQSTQA-----SNPQNPN------PSS-----YTSEVRGGGGGGEDR----GEQKPSRAQLLHDAGSLASVVSIGHGGAGRTMVDHHHHQSLN--F--------------------------------------------------------------------------------------------------------------------------------------------GTMDQLDFDAYEAAGGGQGFGAGGGVSLTLGLQQQHADPHDGVNVAFAAAAAPPNSSGVAAEYLFMGGGEHQQQLPQTAQFGAVMEGDAASHYRGLSATAA------------------------------------------------GFHLLHDLAG------------------   [586]
lcl|Ppa_At5g02030_3_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLAGEVDSARDPASFVTTSS---------------------------------------------------------LVTVSQVPLESEMIQGLA-----------------------------------------------------------------------------------------------------------------------------------EAARCESR---DDLELKKQKLSL------MLDE------------------------VEARYRR--YCDHLQLVITGFNSQ-------AGPNTATPYTILALQAMSRHFRCLKDAIGSQLRIVKRTL---------------------------------------------------------------------------------------------GEDD-----RTG------------------------------------------------------------------------------------------------------------QGE------TSRLRYVDQQIRQ-QR-ALQQLGMLQQ-------------HA--WRP-QRG------LPERAVSVLRAWLFEHFLHP-------YPKDVDKLSLAK-QTGLTRS---------------QVSNW-FINARVRLWKPM--------VEEMYVEEQKEY--SEDHSTALA-----QSERMAR------DQV-----EIE-------NNTYE----QYEGGRGHSGLLHEISAGAQSSR-------LPNGVKRNDDRE--HDAGASVSEAGAMSSDTNTEFHSQPLPRGHHLDVGVAGSYNPEGREVKKPKLNSVSDAFNSNSSTALIHPGMNVDTGENCAQPQNFSPEDELDLQGKGDTDFGAHSQSMNQINQDENGYTISQRGAT------------------------------TVDQLEANVASGTFGSYNSNIGHRYGNEDYASRTISAGLTT?-----------------------------------------------------------------------------------------------------------------------   [465]
'gi|15238073|ref|NP 198957.1| BEL1 (BELL 1); DNA binding / transcription factor [Arabidopsis thaliana] >gi|15146193|gb|AAK83580.'    -------------MA---------------------------------------------------------RDQFYGHNNHHHQEQQH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QMINQIQGFDETNQN---------------------------------------PTDHHHYNHQIFGSNSNMGMMIDFSKQQQIRMTSGS-------------------------------------DHHHHHHQTSGGTDQNQLLEDSSSAMRLCNVNNDFPSEV----------------------------------------------NDERPPQRPSQGLSLSLSSSNPTSISLQSFE---------------------------------LRPQQQQQQGY-SGNKSTQHQNLQHTQMMMMMMNSHHQNNN------------------------NNNHQHHNHHQFQIGSSK---------------------------------------------------------YLSPAQELLSEFCSLGVKESDEEVMMMK-----------------------HKKKQKGKQQEE---------------------------------------------------WDTSHHSNND-------QHDQSATTSSKKHV----PPLHSLEF---MELQKRKAKLLS------MLEE------------------------LKRRYGH--YREQMRVAAAAFEAA-------VGLGGAEIYTALASRAMSRHFRCLKDGLVGQIQATSQAL---------------------------------------------------------------------------------------------GERE-----EDNRAVSI-----------------------------------------------------------------------------------------------------AARGE------TPRLRLLDQALRQ-QK-SYRQMTLVDA-------------HP--WRP-QRG------LPERAVTTLRAWLFEHFLHP-------YPSDVDKHILAR-QTGLSRS---------------QVSNW-FINARVRLWKPM--------IEEMYCEETRSE--QMEITNPMM-----IDTKPDP------DQL-----IRVEPESLSSIVTNP----TSKSGHNSTHGTMSLGSTFDFSL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------YGNQAVTYAGEGGPRGDVSLTLGLQRND---------------------------GNGGVSLALSPVTAQGGQLFYGRDHIEEGPVQYSASMLDDDQVQNLPYRNLM----------------------------------GAQLLHDIV-------------------   [611]
'gi|15450866|gb|AAK96704.1| homeotic protein BEL1 homolog [Arabidopsis thaliana]'                                    -------------MA---------------------------------------------------------RDQFYGHNNHHHQEQQH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QMINQIQGFDETNQN---------------------------------------PTDHHHYNHQIFGSNSNMGMMIDFSKQQQIRMTSGS-------------------------------------DHHHHHHQTSGGTDQNQLLEDSSSAMRLCNVNNDFPSEV----------------------------------------------NDEGPPQRPSQGLSLSLSSSNPTSISLQSFE---------------------------------LRPQQQQQQGY-SGNKSTQHQNLQHTQMMMMMMNSHHQNNN------------------------NNNHQHHNHHQFQIGSSK---------------------------------------------------------YLSPAQELLSEFCSLGVKESDEEVMMMK-----------------------HKKKQKGKQQEE---------------------------------------------------WDTSHHSNND-------QHDQSATTSSKKHV----PPLHSLEF---MELQKRKAKLLS------MLEE------------------------LKRRYGH--YREQMRVAAAAFEAA-------VGLGGAEIYTALASRAMSRHFRCLKDGLVGQIQATSQAL---------------------------------------------------------------------------------------------GERE-----EDNRAVSI-----------------------------------------------------------------------------------------------------AARGE------TPRLRLLDQALRQ-QK-SYRQMTLVDA-------------HP--WRP-QRG------LPERAVTTLRAWLFEHFLHP-------YPSDVDKHILAR-QTGLSRS---------------QVSNW-FINARVRLWKPM--------IEEMYCEETRSE--QMEITNPMM-----IDTKPDP------DQL-----IRVEPESLSSIVTNP----TSKSGHNSTHGTMS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [513]
'gi|31323445|gb|AAP47024.1| bell-like homeodomain protein 1 [Lycopersicon esculentum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QHFDMYQSDTTTAYQPHGGLSRSIEFVNHPDFTTDSHDVNHSRHLMDLLGA-------------------------------------------------------SHDANTNQQAQRLSLSLGSHSLVSTFTNNPSY---------------------------------------------------------------------------MNQEIDQRNNEFSFSAAAMNQSFSNVCGTESFVSAIGNSK---------------------------------------------------------YLKPTQSLLEELVCIGGKTIDSSNEKFIRRLSRNSK-----------------------------------------------------------------------------------------------KGSLSLRAMLKGEIPP--NNELFNER---HELYVKIMKLIA------LLEE------------------------VERRYEQ--YYQHMEEVTSTFEVI-------AGFGAGKAYTALALQAMSRHFCCLRDSIISQINFIRQKM---------------------------------------------------------------------------------------------PRDV-----------PK-----------------------------------------------------------------------------------------------------ISSG-------LSHLSLFEKETLQ-NRISLQQLGIIQSNR-----------QA--WQP-IRG------LPETSVAFLRSWLFEHFLHP-------YPNDSEKLMLSS-QTGLSKN---------------QVSNW-FINARVRLWKPM--------IEEMYKEEFAES--SVESDNLLN-----REAVTDS------AEE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [393]
'gi|72537436|gb|AAZ73642.1| At1g19700 [Arabidopsis thaliana] >gi|72537434|gb|AAZ73641.1| At1g19700 [Arabidopsis thaliana] >gi|72'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R---------------------------------------------------------YLKPAQNLLDEVVSVKKELNQMS----------------------------KKKMKVN---DF---------------------------------------------------NNGSKEIEG--------GGSGELSNDSNGKS----IELSTIER---DELHNKKNKLLT------MVDE------------------------VDKRYNQ--YYHQMEALASSFEIV-------AGLGSAKPYTSVALNRISRHFRALRDAIKEQIQIVREKL---------------------------------------------------------------------------------------------GEKG-----GESLDEQQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSVLRAWLFEHFLHP-------YPKESEKIMLAK-QTGLSKN---------------QVANW-FINA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [237]
'gi|72537422|gb|AAZ73635.1| At1g19700 [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R---------------------------------------------------------YLKPAQNLLDEVVSVKKELNQMS----------------------------KKKMKVN---DF---------------------------------------------------NNGSKEIEG--------GGSGELSNDSNGKS----IELSTIER---DELHNKKNKLLT------MVDE------------------------VDKRYNQ--YYHQMEALASSFEIV-------AGLGSAKPYTS?ALNRISRHFRALRDAIKEQIQIVREKL---------------------------------------------------------------------------------------------GEKG-----GESLDEQQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSVLRAWLFEHFLHP-------YPKESEKIMLAK-QTGLSKN---------------QVANW-FINA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [237]
'gi|72537452|gb|AAZ73650.1| At1g19700 [Arabidopsis thaliana] >gi|72537448|gb|AAZ73648.1| At1g19700 [Arabidopsis thaliana] >gi|72'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R---------------------------------------------------------YLKPAQNLLDEVVSVKKELNQMG----------------------------KKKMKVN---DF---------------------------------------------------NSGSKEIEG--------GG-GELSSDSNGKS----IELSTIER---EELQNKKNKLLT------MVDE------------------------VDKRYNQ--YYHQMEALASSFEIV-------AGLGSAKPYTSVALNRISRHFRALRDAIKEQIQIVREKL---------------------------------------------------------------------------------------------GEKG-----GESLDEQQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSVLRAWLFEHFLHP-------YPKESEKIMLAK-QTGLSKN---------------QVANW-FINA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [236]
'gi|15222231|ref|NP 177676.1| transcription factor [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDFRVRHECSSLRGTLLDSR---------------------------------------------------------YAKAVQCLVEEVIDIGGREVELCNNILINQLFPGRRRPGF--------------------------------------------------------------------------------------------ALSSEIKSELCSS----GFMSLPEN---HEIHIKITKLLS------LLQQ------------------------VEERFEQ--YCNQLEQVISSFEEI-------AGEGSSKVYTGLALQAMTRHFGSLEEAIISQLNSVRRRFII-------------------------------------------------------------------------------------------SHQD----------VPK-----------------------------------------------------------------------------------------------------IISSG------LSQLSLFDGNT-T-SS-SLQRLGLVQGPQR----------HA--WKP-IRG------LPETSVAILRAWLFQHFLHPSVFLLLNYPNEAEKLVLAS-QTGLSKN---------------QVSNW-FINARVRLWKPM--------IEEMYREEFGDS--LDESMQREA-----NDDSN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [297]
'gi|72537426|gb|AAZ73637.1| At1g19700 [Arabidopsis thaliana] >gi|72537424|gb|AAZ73636.1| At1g19700 [Arabidopsis thaliana]'           ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R---------------------------------------------------------YLKPAQNLLDEVVSVKKELNQMS----------------------------KKKMKVN---DF---------------------------------------------------NNGSKEIEG--------GGSGELSNDSNGKS----IELSTIER---DELHNKKNKLLT------MVDE------------------------VDKRYNQ--YYHQMEALASSFEIV-------AGLGSAKPYTSVALNRISCHFRALRDAIKEQIQIVREKL---------------------------------------------------------------------------------------------GEKG-----GESLDEQQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSVLRAWLFEHFLHP-------YPKESEKIMLAK-QTGLSKN---------------QVANW-FINA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [237]
'gi|72537428|gb|AAZ73638.1| At1g19700 [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R---------------------------------------------------------YLKPAQNLLDEVVSVKKELNQMS----------------------------KKKMKVN---DF---------------------------------------------------NNGSKEIEG--------GGSGELSNDSNGKS----IELSTIER---DELHNKKNKLLT------MVDE------------------------VDKRYNQ--YYHQMEALASSFEIV-------AGLGSAKPYTSVALNRISRHFRALRDAIKEQIQIVREKL---------------------------------------------------------------------------------------------GEKG-----GESLDEQQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSVLRAWLFEHFLHP-------YPKESEKIMLAK-QTGLSKN---------------Q?ANW-FINA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [237]
'gi|72537450|gb|AAZ73649.1| At1g19700 [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R---------------------------------------------------------YLKPAQNLLDEVVSVKKELNQMG----------------------------KKKMKVN---DF---------------------------------------------------NSGSKEIEG--------GG-GELSSDSNGKS----IELSTIER---EELQNKKNKLLT------MVDE------------------------VDKRYNQ--YYHQMEALASSFEI?-------AGLGSAKPYTSVALNRISRHFRALRDAIKEQIQIVREKL---------------------------------------------------------------------------------------------GEKG-----GESLDEQQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSVLRAWLFEHFLHP-------YPKESEKIMLAK-QTGLSKN---------------QVANW-FINA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [236]
'gi|72537454|gb|AAZ73651.1| At1g19700-like protein [Arabidopsis lyrata]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R---------------------------------------------------------YLKPAQNLLDEVVSVKKELNQMG----------------------------KKKMKVN---DF---------------------------------------------------NNGSKEIEG--------GGSGELSNDLNGKS----MELSTVER---EELQNKKNKLLT------MVDE------------------------VDKRYNQ--YYHQMEALASSFEIV-------AGLGSAKAYTSVALNRISRHFRALRDAIKEQIQIIREKL---------------------------------------------------------------------------------------------GEKG-----GESLDEQQ-----------------------------------------------------------------------------------------------------GER--------IPRLRYLDQRLRQ-QR-ALHQQLGMVR-------------PA--WRP-QRG------LPENSVSVLRAWLFEHFLHP-------YPKESEKIMLAK-QTGLSKN---------------QVANW-FINA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [237]
'gi|19743685|gb|AAL92498.1| knotted1-interacting protein [Zea mays]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVMAKQHHDKGLPKQ--------------------------------------------------------------------------------------------------------------------------------ARNEPAPFRLEQCCRCDDAHRQAD---------------------------------------------DESMDAAGSAGPLHLTLGPLGSAAGPRCSCGV----------------------------------------------------------------------------------------------APAPAPALAAPATVAVLRGSR---------------------------------------------------------YMRPAQELLGEVVRVADLAAADDEDED--------------------------------------------------------------------------------------------------------QATERLEGGGHRAA----RRAAGKAG---NDGDGVQAKLLY------LLSE------------------------LESRRER--YFGELERVVSSFEPA-------LGGGAAAAYTTLMARAMGRHFGNLRRAILRRLRLQAAAAARRS------------------------------------------------------------------------------LRRG-------GEDQ-----DDDDDDDG-----------------------------------------------------------------------------------------------------DSDGE-------VTEELVDRLARR-TK---LAAAARAE-------------QA--WRP-LRG------LPDGSVAVLRAWLFDHFLHP-------YPNDGEKLRLAV-TTGLSRR---------------QISNW-FINARVRLWKPM--------IEEMYKDEFSDG--SAVSSYDDA-----SASGASS------SS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [359]
'gi|50540719|gb|AAT77875.1| putative homeodomain protein [Oryza sativa (japonica cultivar-group)]'                                   -------------MGIAAPPCQPGQTTTFVISQPTSSKSSPAAIVVRPPATASSSSMSHSQGFHQPSSGAVFGFSSDGFDGRPGSGQDHQQHEQQQQQHVAQQSRRDKLRVQGFDPAAAAAGHGLLPIEGDEHGAEPGAMYDHAEAAAAGASNMLSEMFNFPSQPPTGPSATELLASQMNANYRFGFRQAA--GLAG--GEGGWFGGGGAAGR---------TG------LVLGGASLGSLGETSSPKQQASGMAGLAADPAAAMHL---------------------------------------FLMNPQQQQQQQSRS---------------------------------------STSPPPSDAQS------------------------------------------------------------------------------AIHQHHEAFQAFGGAGAAAFG------------------------------------------------GGAAAGVVEGQGLSLSLSPSLQQLEMAKQAEE-----------------------------------LRVRDGVL-YFNRQQQ---------------QQQAAAAAASVQQQLPMALHGQVGVLGQQLHGGGYGGPAGVAGVLRNSK---------------------------------------------------------YTRAAQELLEEFCSVGRGQIKGGG---------------------------GRGSAPNNPNSS---------------------------------------------------KAAASS-----------SGAAQSPSSASKEP----PQLSPADR---FEHQRKKAKLIS------MLDEARVIRVASLPGEKVFYMG------VDRRYNH--YCDQMQMVVNFFDSV-------MGFGAATPYTALAQKAMSRHFRCLKDAIAAQLRGTCEAL---------------------------------------------------------------------------------------------GEKD-----AGT--GSG-----------------------------------------------------------------------------------------------------LTKGE------TPRLRAIDQSLRQ-QR-AFHHMGIMEQ-------------EA--WRP-QRG------LPERSVNILRSWLFEHFLHP-------YPSDADKHLLAR-QTGLSRN---------------QMHIY-VI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [631]
'gi|50906521|ref|XP 464749.1| putative homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|49388535|dbj|BAD25657.1| pu'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSGNPSFSQLGAVDAAMNGGYFMAASGNGADVPLFHPAMAPPHDHGGSFGYGDAAAAAMDVGAHFAAANNLVLASLATQLFGAAPAAAAHGHGDYLGATTPPEEEMGGGYDVAVGDSSGGAVSLACLGHGQPGDMAAGWCSTSARKPSCNWSSSNAGVHGGSYYLAGVPEAAGFVSAAAAASELSLSLCSKSSSDSMLNAGGD------------------------------------------------------------------------QCSSAASRSGLTQMSRVVVVEPEPPLVPYYPAANFAVVVARSR---------------------------------------------------------YAAVAQQVLNDAVGCVLGGVADAAADSA--------------------------------------------------------------------------------------SGVDSGSSRPSSCSVAGGAPSSAVSSNNQLIASSGEHTHGGGD---ASAQRLRSELLT------MLQL------------------------MDQKYNQ--CLDEIQSTTARFNTLTHATARAAGMSSSSICAPFAHRAVSAMYHGLRRRIAGEIMSAAAAA---------------------------------------------------------------------------------------------GRPC-----RGGESSSA-----------------------------------------------------------------------------------------------------VTGGE--------RERSWESAFIQ-KHWAVQQLRRGEQ-------------QC--WRP-QRG------LPEKSVAVLKAWMFENFLRP-------YPKDSEKEMLAA-RSGLSRN---------------QVSNW-FINARVRLWKPM--------IEEMCEELKRSS-----GGGAGN-----QALAMEH------MNS-----QDVVS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [539]
'gi|15234005|ref|NP 195024.1| ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1); transcription factor [Arabidopsis thaliana] >gi|20465'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNNNNNNTFSSLDNVMTNQNPLLMDFIPSREDSTSFSTMLPWNTIRSDPLQMGGFDIFNSMLTNKYLSSSPRSIDVQDNRNVEFMAPPPHPPPLHPLDHLRHYDDSSNNMWGFEANSEFQAFSGVVGPSEPMMSTFGEED------------------------FPFLISNKRNNELSLSLASDVSDECSEISLCA----------------------------------------------------------------------------------ATRLASEQASCSSKDISNNVVTQGFSQLIFGSK---------------------------------------------------------YLHSVQEILSHFAAYSLDYSSRGTES--------------------------------------------------------------------------------------------GAASSAFTSRFENITEFLDGDSNNSEA----GFGSTFQR---RALEAKKTHLLD------LLQM------------------------VDDRYSH--CVDEIHTVISAFHAA-------TEL-DPQLHTRFALQTVSFLYKNLRERICKKIISMGSVLER-------------------------------------------------------------------------------------------GKDK----------------------------------------------------------------------------------------------------------------------------------TQETSMFH-QHCLLQQLKRKNH-------------QI--WRP-QRG------LPEKSVSVLRNWMFQNFLHP-------YPKDSEKHLLAI-RSGLTRS---------------QVSNW-FINARVRLWKPM--------IEEMYAEMNKRK----LNNSHIQ-----PNGPTLR------MPK-----SVMMSQAMHK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [473]
'gi|15215913|emb|CAC51426.1| H1 gene [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNNNNNNTFSSLDNVMTNQNPLLMDFIPSRED----STMLPWNTIRSDPLQMGGFDIFNSMLTNKYLSSSPRSIDVQDNRNVEFMAPPPHPPPLHPLDHLRHYDDSSNNMWGFEANSEFQAFSGVVGPSEPMMSTFGEED------------------------FPFLISNKRNNELSLSLASDVSDECSEISLCA----------------------------------------------------------------------------------ATRLASEQASCSSKDISNNVVTQGFSQLIFGSK---------------------------------------------------------YLHSVQEILSHFAAYSLDYSSRGTES--------------------------------------------------------------------------------------------GAASSAFTSRFENITEFLDGDSNNSEA----GFGSTFQR---RALEAKKTHLLD------LLQM------------------------VDDRYSH--CVDEIHTVISAFHAA-------TEL-DPQLHTRFALQTVSFLYKNLRERICKKIISMGSVLER-------------------------------------------------------------------------------------------GKDK----------------------------------------------------------------------------------------------------------------------------------TQETSMFH-QHCLLQQLKRKNH-------------QI--WRP-QRG------LPEKSVSVLRNWMFQNFLHP-------YPKDSEKHLLAI-RSGLTRS---------------QVSNW-FINARVRLWKPM--------IEEMYAEMNKRK----LNNSHIQ-----PNGPTLR------MPK-----SVMMSQAMHK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [469]
lcl|Ppa_At5g02030_5_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPGSLVGTNLNAAAALDTQRVEE---------------------------------------------------------------------------------------------------------------------------TAFDIDEAEDLAESQSRKEKLEV------LLRS---------PNHLDDRKFVLNCSQVESNYEA--YRANVLEMRNNFDQF-------GGREGSLLYTALGLQAMSRRFRICKDGITRQLRVATREM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLSSQLRQ-ARCKVHPER-----------------QL--LKPNHRGPDLHARLPDSATDILRRWLFEHFLKP-------YPQHRDKCWLAE-QTSLSRS---------------QVTNW-FINARVRLWKPM--------VEELYEQIQRED--EAEQAARES-----SANSRQS------SQD-----GIYSSGGYYQRNKVQ----CFTSCDHQNKLNNSTTVYGTRAV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [283]
'gi|53792801|dbj|BAD53835.1| putative H1 gene protein [Oryza sativa (japonica cultivar-group)] >gi|53791799|dbj|BAD53744.1| puta'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MALSLSSSISSSVHVTNNLAHASPSPACCCPCSNPSYHQLGLDAISCCFVAGGGGAEAAAPFFGFGFGDVDGEFLVASPVAAVGDELACAVPLRRPQGSVSEEEVNAAAVAAAAAGGAESCSTVHSVLGSVEFGCGTSSGVTIAQASRMGRLAGEAPCGDAGGGGWIYGGS---------------------------GIAPLHGAYYLSGFSSGAGAGFLSPFAASSVAAAAPAASELSLRLGATKCSSPSSMANAS-----------------------------------------------SEVSCSGLTHVSSGGGLGYHQAAAAGAGAALFHPTHGDDAAAAAAGELRQAYHSRAPPHFSQVVSRSA--------------------------------------------------------VLAHVAQELLNGFVACLLQDVAADAAS-------------------------------------------------------------------------------------------------GVDGGEASQALSSGFSARITTAPTEDASPGSGG----ARWAAEAQRLRK------LLQL------------------------VDEKCNQ--CVEEMQSTAARFNSM----VRSTGGGGGGLTAAFAGRAVAAAYRRVRRRVMGQLVAAATAR---------------------------------------------------------------------------------------------SSSS-----AAAAALEE------------------------------------------------------------------------------------------------------------------KERSWESSFIQ-KHWAMQQLRRGDQ-------------QS--WRP-QRG------LPEKSVAVLKAWMFENFLRP-------YPKDSEKDMLAA-RSGLSRS---------------QVSNW-FINARVRLWKPM--------IEDMYEELKKTS--GGSDGAAEI-----EHLSSKDVLSLES-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [573]
'gi|10120438|gb|AAG13063.1| Hypothetical protein [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDFRVRHECSSLRGTLLDSR---------------------------------------------------------YAKAVQCLVEEVIDIGGREVELCNNILINQLFPGRRRPGF--------------------------------------------------------------------------------------------ALSSEIKSELCSS----GFMSLPEN---HEIHIKITKLLS------LLQQ------------------------VEERFEQ--YCNQLEQVISSFEEI-------AGEGSSKVYTGLALQAMTRHFGSLEEAIISQLNSVRRRFII-------------------------------------------------------------------------------------------SHQD----------VPK-----------------------------------------------------------------------------------------------------IISSG------LSQLSLFDGNT-T-SS-SLQRLGLVQGPQR----------HA--WKP-IRG------LPETSVAILRAWLFQHFLHPSVFLLLKCNNTSDESKLKCWRNNISLI---------------AVMKT-VIRMKQRSWCWR--------LKQDFRRTKYTP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNLILLFF------------------------------------------------------------------------------------------------------------------------------------------------   [292]
'gi|72021369|ref|XP 796439.1| PREDICTED: similar to Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2) ['    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQSSSEEAAEIKHRPAGTRTVPASVLKAGTESVGNLTPEEA--------EELQVQLEKDKRAVYQ---------------------------------------------------HPLFPLMALLFEKCEQATQ-----------------------------------------------------------------------------------------------------SPDPPTSASFDVDIEEFVNRLKREGSTF-FIEDTEIDTLMIKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CHRYITCLKSKMHSENLLRDERGESAQFDSQYLTNGDLLDLEPPPSEHN---------------------------------------------------------QISQNHPTSTPNSQAVILQHGAHSQANQYQAATVVNSAGQVVYTPVLPQGVVTPQGILTQSIPGNNAHHHHHHHHKKKSDPPPPHQLQQHVVPIIHGSTPLSQIGISHQGQSS---------------AGQQQAHNMLSS----LNQGDLRV-AMADAAEVNDLLN-------------K---RKP-KRG-----VLPKHATTVMRSWLFQHIVHP-------YPSEDEKRMIAA-QTNLTML---------------QVNNW-FINARRRILQPM--------LDASNPEAATKN------KKPKS-----QNRPSTQ-RFWPQSLA-----QLGQTTTITQATAG-----GTSSLDRRNMDDEASAALDSVRHLSSDSMSPMLGVRQRSPSS--VSSLDNLGASGADSLHDDDDDDDDLSTNLELGSDSGMVD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [526]
gnl|CMER|CMR176C_unknown_homeobox_protein                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGRALLNQVPMEAFFIFPEE---------------------------------------------------------------------------------------------VPETAGNMLTPSRTTETAEEGSRTLFTVDRNAGNTGSELPLPALSDVLTATSLQVDHSLENIDEEIGCGGIPEASAVGHGISVDIDALDLYLDMRDGTQTTASER-------------------------------------------------------------------------------------------------------------------RAQVDNAEDSIASVREVSIDQPEHSRARLLSWCRRTALLARNLALEYDGPYKDLVRLQAHCLANQVEQLWAESPCRHEARAPVATRHSV---------SASASLATASAAEPRDTLYRLPTNVVQGACDASAS-----------------------------------------------------------------------------------------------DSNT-----------------------------------------------------------------------------------------------------------------------------CSKQGTAARCKRK-RR-SFGGIHGYQA-------------RATKHRT-RAS------TNEYASRILKQWLLDHFLNP-------YPGDEEKHQLMR-RTGLTYN---------------QLNNW-FINARVRLWKPL--------VDALACKRQRQQ--EQPGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [361]
'gi|70570191|dbj|BAE06553.1| transcription factor protein [Ciona intestinalis]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSQQQFDDGMAHFGGMNDLRDMSQPSSGAGGLY-GGDLNRSIPQLGHLSHGHS-SMSHFSASTPGSA----HPMSTMHATQSSGSSTSMDERLSDSERVNLKGDKDAIYS---------------------------------------------------HPLFPLLALVFEKCELATCTPRDPGVT---------------------------------------------------------------------------------------------GGDVCSSDSFNDDIACFAKQIHSENRPITFDPNNEIDNLMILSIQVLRFHLLE--------------------------------------------LEKVHELCQNF--------------------------TSRYINCLKGKMPIDLVIEDREGGVPS-------------------------------------------------------------------------------KLEANEPTSSGSEQSFYN-QETPSHPS------------------------------MDTNAMHAGNMGGGGPVA------------------------IPAQSSSHHHLHTPSTHQ-----------HQQQHHHNADSSPTGSTIEGSTYS-GEGGNEDDSDPGK-------------KP--QQK-KRG-----IFPKQATNIMRAWLFQNLTHP-------YPTEEQKKSLAN-QTGLTIL---------------QVNNW-FINARRRIVQPM--------IDQSNRAVSNAMGPYSPDGQSMGGFLCMDGQPPHMAMRHPGWPS-----GFQSMPGAAD-----------------MMAAQHISMAAANSSFNPTSTMSPSHHPSGLHHQLRHPPSQAMLLPGSHQHHHAAAAAAAMMMPHHAAAVAAAAGHSAVTGMGHHPHHGHHLHHSGQSTMNPADMSSHMLGHTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [554]
'gi|70570981|dbj|BAE06656.1| transcription factor protein [Ciona intestinalis]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSQDMTQHQYSSECHGQDTGTGVEG--------LDEAAQLENDKHLIKT---------------------------------------------------HPLFVLLELLFEKCERATR-----------------------------------------------------------------------------------------------------GEDNPTSLSFDDDIQEFVRREDFRMSPI-IIDNPEIDNLMIKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CHRYITCLKGKMHSENLLRTDMTGFVD-----------------------------------------------------------------------------------------PNTHSLVAQGNSQCMANTPNANVTVNQQGEIVMQGGLYQQSLSPNSQMLSQSDS-----------------------------GIDGSTPLSQVGVSPP-------------------SSQLQMLGTQQLFHLQH--------QPIPSCGLTDETS-------------G---RKT-KRG-----VLPKQATEILRSWLFSHIVHP-------YPTEDEKRSLAT-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDASNPDPSTPPAASPKIKKSKP-----QSARPTE-RFWPNSLS-----FNGGQRNEEPKDETS----SRMSIERPSCAQQASKNEQSDQTLISDNFHP-----PTSDHS--PPNNNTLGHRSPNHLHHYPHNDLALTSSASLGLSVGNN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [442]
'gi|28797555|gb|AAO47087.1| homeodomain-containing protein [Venturia canescens]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEGSTAVALAMVTPGYDQDPASGVAD-----YTTHQDQAQFEADKRAVYK---------------------------------------------------HPLFPLLALLFERCELATQ-----------------------------------------------------------------------------------------------------SSDNSMSESFNMDIQAFVQHQERDRKPF-LINDPEIDGLMIKAIQVLRIHLLE--------------------------------------------LEKVQELCKDF--------------------------CNRYIGCLKGKMQSENLLRSDYSHHGH------------DMGPSSGSNG----------------------------------------------------SSPLQVLSSTGNDVEPGANGLGVSRGDALSDN------------GSVDLPIAQDEDPLDLERSSTRSSSVNAHRSVRSDSHDQDDPLSP--------STIHGSTPLSQIGAHSCAPVNDIYLGQDITVTGSPSPGPSEDDDDGSGG------------APATHSGGHGSIR-------------K---GRQ-KRG-----VLPKQATSIMRAWLFHHLVHP-------YPTEDEKRQIAS-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDGAGAEALPRTGKRHKVAKQSS-----QNQQPNQ-QLQDQQLS-----QHQSHSQQAIGAAG--------------------------------------GDWQSEDSG--SESGSSDGDGGAEKFKDGNESDEDDLH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [456]
'gi|6671101|gb|AAF23096.1| meis2 [Danio rerio] >gi|18859011|ref|NP 570985.1| myeloid ecotropic viral integration site 2.1 [Danio'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLMAQRYEDLAHYGGGMD-------GVGVPTSMYGDPHAPRPLPQVHHLNHGPPPHANQHYGAHAP-------------------HS-IMPSSMGSAVNDALKRDKDQIYG---------------------------------------------------HPLFPLLALVFEKCELATCTPREPGVA---------------------------------------------------------------------------------------------GGDVCSSDSFNEDIAVFAKQIRAE-KPL-FSSNPELDNLMIQSIQVLRFHLLE--------------------------------------------LEKVHELCDNF--------------------------CHRYISCLKGKMPIDLVIDERD-GCKS-------------------------------------------------------------------------------DFDDLSGSSTNLAD-----HNPASWRD-------------------------------MDDAHSTPSVGTPGPSS-----------------------------------------------------GGHASQSGDNSSELGDGLDNSLAS-PGTGDEDDQ--DK-------------K---RQK-KRG-----IFPKVATNIMRAWLFQHLTHP-------YPSEEQKKQLAQ-DTGLTNL---------------QVNNW-FINARRRIVQPM--------IDQSNRAVSQGT-AYSPDGQPMGGFV-LDGQ-QHMGLRPGGPMG-----GM-GMNMGMDGQWHYM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [393]
'gi|33604041|gb|AAH56317.1| Myeloid ecotropic viral integration site 4.1a [Danio rerio] >gi|47271427|ref|NP 571972.2| myeloid ec'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAQRYEDLVHY--GMD-------AVGIPSPMYGDPHAARAMQAV-HVSHGPPLHPYPHP---------------------------ATAPGVPPPVNDALKRDKDAIYG---------------------------------------------------HPLFPLLALVFEKCELATCTPRESGVT----------------------------------------------------------------------------------------------GDVCSSESFDEDITVFSKQIRAE-KPF-FSSNPDLDNLMIQAIQVLRFHLLE--------------------------------------------LEKVHELCDNF--------------------------CHRYISCLKGKMPIDLVVDDKEGGSRS-------------------------------------------------------------------------------DGEEFTRTPGG--------SEQVFWRE--------------------------------DDTASVHSTDTPAACG-----------------------------------------------------RRSSSHNGDNSSEHGDFLDQSVAS-PSTGEEEDPDKER-------------K---NNK-KRG-----IFPKVATNIMRAWLFQHLTHP-------YPSEEQKRQLSQ-DTGLTIL---------------QVNNW-FINARRRIVQPM--------IDQSNRAVGHSG-PYTPDAQPMGGFV-MDGQ-SHMGIRPPAALG-----GLGGVNMGLESQWHYM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [380]
'gi|11877245|emb|CAC19011.1| meis2.1 protein [Danio rerio] >gi|42542926|gb|AAH66375.1| Myeloid ecotropic viral integration site'     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLMAQRYEDLAHYGGGMD-------GVGVPTSMYGDPHAPRPLPQVHHLNHGPPPHANQHYGAHAP-------------------HS-IMPSSMGSAVNDALKRDKDQIYG---------------------------------------------------HPLFPLLALVFEKCELATCTPREPGVA---------------------------------------------------------------------------------------------GGDVCSSDSFNEDIAVFAKQIRAE-KPL-FSSNPELDNLMIQSIQVLRFHLLE--------------------------------------------LEKVHELCDNF--------------------------CHRYISCLKGKMPIDLVIDERD-GCKS-------------------------------------------------------------------------------DFDDLSGSSTNLAD-----HNPASWRD-------------------------------MDDAHSTPSVGTPGPSS-----------------------------------------------------GGHASQSGDNSSELGDGLDNSLAS-PGTGDEDDQ--DK-------------K---RQK-KRG-----IFPKVATNIMRAWLFQHLTHP-------YPSEEQKKQLAQ-DTGLTIL---------------QVNNW-FINARRRIVQPM--------IDQSNRAVSQGT-AYSPDGQPMGGFV-LDGQ-QHMGLRPGGPMG-----GM-GMNMGMDGQWHYM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [393]
'gi|25527052|pir||JC7766 three-amino-acid loop extension(TALE) homeodomain protein, PKNOX2 - human'                                  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMATQNVPPPPY----QDSPQMTATAQPPSKAQAVHISAPSAAASTPVPSAP--------IDPQAQLEADKRAVYR---------------------------------------------------HPLFPLLTLLFEKCEQATQ-----------------------------------------------------------------------------------------------------GSECITSASFDVDIENFVHQQEQEHKPF-FSDDPELDNLMVKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CNRYITCFKTKMHSDNLLRNDLGGPYSPNQPSINLHS----------------------------------------------------------------QDLLQNSPNSMSGVSNNPQGIVVPASALQQGN--IAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIP----------------------------------------------------------------QGAIQIQNTQ----VNLDLTSL----------LDNEDK-------------K---SKN-KRG-----VLPKHATNIMRSWLFQHLMHP-------YPTEDEKRQIAA-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDASNPDPAPKA------KKIKS-----QHRPTQR--FWPNSIAAGVLQQQGGAPGTNPDGSINLDNLQSLSSDSATMAMQQAMMAAHDDSLDGTE-------EEDEDEM--EEEEEEELEEEVDELQTTNVSDLGLEHSDSLE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [460]
'gi|73954548|ref|XP 849311.1| PREDICTED: similar to Pbx/knotted 1 homeobox 2 isoform 2 [Canis familiaris]'                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMQHASPAPAL---------T-MMATQNVPPPPY----QDSPQMTATAQAPSKTQAVHISAPSAAASTPVPSAP--------IDPQAQLEADKRAVYR---------------------------------------------------HPLFPLLTLLFEKCEQATQ-----------------------------------------------------------------------------------------------------GSECITSASFDVDIENFVHQQEQEHKPF-FSDDPELDNLMVKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHS----------------------------------------------------------------QDLLQNSPNSMSGVSNNPQGIVVPASALQQGN--IAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIP----------------------------------------------------------------QGAIQIQNTQ----VNLDLTSL----------LDNEDK-------------K---SKN-KRG-----VLPKHATNIMRSWLFQHLMHP-------YPTEDEKRQIAA-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDASNPDPAPKA------KKIKS-----QHRPTQR--FWPNSIAAGVLQQQGGAPGTNPDGSISLDNLQSLSSDNATMAMQQAMMAAHDDSLDGTE-------EEDEDEM--EEEEEEELEEETDELQTTNVSDLGLEHSDSLE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [472]
'gi|73954550|ref|XP 858483.1| PREDICTED: similar to Pbx/knotted 1 homeobox 2 isoform 3 [Canis familiaris]'                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMQHASPAPAL---------T-MMATQNVPPPPY----QDSPQMTATAQAPSKTQAVHISAPSAAASTPVPSAP--------IDPQAQLEADKRAVYR---------------------------------------------------HPLFPLLTLLFEKCEQATQ-----------------------------------------------------------------------------------------------------GSECITSASFDVDIENFVHQQEQEHKPF-FSDDPELDNLMVKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CNRYITCLKTKMHSDNLLRNDLGGPYSPNHNYV------------------------------------------------------------------------------LNPFSNNPQGIVVPASALQQGN--IAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIP----------------------------------------------------------------QGAIQIQNTQVSVRVNLDLTSL----------LDNEDK-------------K---SKN-KRG-----VLPKHATNIMRSWLFQHLMHP-------YPTEDEKRQIAA-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDASNPDPAPKA------KKIKS-----QHRPTQR--FWPNSIAAGVLQQQGGAPGTNPDGSISLDNLQSLSSDNATMAMQQAMMAAHDDSLDGTE-------EEDEDEM--EEEEEEELEEETDELQTTNVSDLGLEHSDSLE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [462]
'gi|74041487|gb|AAZ95042.1| homeodomain transcription factor Meis1a [Ambystoma mexicanum]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAQRYDDLPHY-GGMD-------GVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQY--PHTG-------------------HTNAMPPGMGSSVNDALKRDKDSIYG---------------------------------------------------HPLFPLLALIFEKCELATCTPREPGVA---------------------------------------------------------------------------------------------GGDVCSSESFNEDIAVFAKQIRAE-KPL-FSSNPELDNLMIQAIQVLRFHLLE--------------------------------------------LEKVHELCDNF--------------------------CHRYISCLKGKMPIDLVIDDREGGSKS-------------------------------------------------------------------------------DSEDM-GRPANLTD-----Q-PSWSRD-------------------------------HDDTASTRSGGTPGPSS-----------------------------------------------------GGHTSHSGDNSSEQGDGLDNSVAS-PSTGDEDDPDKEK-------------K---RHK-KRG-----IFPKVATNIMRAWLFQHLTHP-------YPSEEQKKQLAQ-DTGLTIL---------------QVNNW-FINARRRIVQPM--------IDQSNRAVSQGT-PYSQDGQPMGGFV-MDGQ-QHMGIRAPGPMS-----GM-GMNMGMEGQWHYM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [390]
'gi|76657355|ref|XP 874811.1| PREDICTED: similar to Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2) ['    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGTLEACVGSGPGSAAHLGQASGECCHLSLSTLCA-------LIDVNLGHLPRHVTEEENDYSKYLL-DLRTEIC-SLSTKTRLSSSAQMTATAQAPSKAQAVHISTPSAAASTPVPTAP--------IDPQAQLEADKRAVYR---------------------------------------------------HPLFPLLTLLFEKCEQATQ-----------------------------------------------------------------------------------------------------GSECITSASFDVDIENFVHQQEQEHKPF-FSDDPELDNLMVKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHS----------------------------------------------------------------QDLLQNSPNSMSGVSNNPQGIVVPASALQQGN--IAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIP----------------------------------------------------------------QGAIQIQNTQ----VNLDLTSL----------LDNEDK-------------K---SKN-KRG-----VLPKHATNIMRSWLFQHLMHP-------YPTEDEKRQIAA-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDASNPDPAPKA------KKIKS-----QHRPTQR--FWPNSIAAGVLQQQGGAPGTNPDGSINLDNLQSLSSDNATMAMQQAMMAAHDDSLDGTE-------EEEEDEM--EEEEEEELEEEADELQTTNVSDLGLEHSDSLE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [523]
'gi|55637271|ref|XP 508845.1| PREDICTED: similar to Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2) ['    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MILQFISLHFGSRNHRQIPHKAGFPAERERGRVNHKDECPFAQLSKQLVQRGVGGTGELWPLAVEAERKVSMQVKSSLSVLLLSTLGSLETSSFVSVLSQKPSFSDPSLHTLLSITSRSLRLHIFREAGPDGNMGQAHQGILSKTELSGNKAHSLLIPLGLISLLLGHRAAKAGSPECSEGSLGKSSKSGVASSETSCECTKWPLGVGNAEYADWAPMSYINMSHRPPQTSS---------A-VFFTYFCQSQPLSWGLLEHWQMTATAQPPSKAQAVHISAPSAAASTPVPSAP--------IDPQAQLEADKRAVYRLHTESAALGPSSLGIGFQNQGRGQSVQGQALPSPAAPLEQEFLFFSPNTPGHPLFPLLTLLFEKCEQATQ-----------------------------------------------------------------------------------------------------GSECITSASFDVDIENFVHQQEQEHKPF-FSDDPELDNLMVKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CNRYITCLKTKMHSDNLLRNDLGGPYSPNHPSINLHSQFRGIQRKTPLSLKKPATKLGKDDACIRENHSVVSSSARFCVVRVWEEIRHGCPPGCNTFPSLLQDLLQNSPNSMSGVSNNPQGIVVPASALQQGN--IAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIP----------------------------------------------------------------QGAIQIQNTQ----VNLDLTSL----------LDNEDK-------------K---SKN-KRG-----VLPKHATNIMRSWLFQHLMHP-------YPTEDEKRQIAA-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDASNPDPAPKA------KKIKS-----QHRPTQR--FWPNSIAAGVLQQQGGAPGTNPDGSINLDNLQSLSSDSATMAMQQAMMAAHDDSLDGTE-------EEDEDEM--EEEEEEELEEEVDELQTTNVSDLGLEHSDSLE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [812]
'gi|16416147|emb|CAD01142.1| PREP2 protein [Homo sapiens] >gi|26006839|sp|Q96KN3|PKNX2 HUMAN Homeobox protein PKNOX2 (PBX/knotte'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMATQNVPPPPY----QDSPQMTATAQPPSKAQAVHISAPSAAASTPVPSAP--------IDPQAQLEADKRAVYR---------------------------------------------------HPLFPLLTLLFEKCEQATQ-----------------------------------------------------------------------------------------------------GSECITSASFDVDIENFVHQQEQEHKPF-FSDDPELDNLMVKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHS----------------------------------------------------------------QDLLQNSPNSMSGVSNNPQGIVVPASALQQGN--IAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIP----------------------------------------------------------------QGAIQIQNTQ----VNLDLTSL----------LDNEDK-------------K---SKN-KRG-----VLPKHATNIMRSWLFQHLMHP-------YPTEDEKRQIAA-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDASNPDPAPKA------KKIKS-----QHRPTQR--FWPNSIAAGVLQQQGGAPGTNPDGSINLDNLQSLSSDSATMAMQQAMMAAHDDSLDGTE-------EEDEDEM--EEEEEEELEEEVDELQTTNVSDLGLEHSDSLE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [460]
'gi|29747990|gb|AAH50865.1| Pbx/knotted 1 homeobox 2 [Mus musculus] >gi|20279043|gb|AAM18702.1| homeodomain containing transcrip'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATQNVPPPPY----QDSPQMTATAQPPSKAQAVHISAPSATASTPVPSAP--------IDPQAQLEADKRAVYR---------------------------------------------------HPLFPLLTLLFEKCEQATQ-----------------------------------------------------------------------------------------------------GSECITSASFDVDIENFVHQQEQEHKPF-FSDDPELDNLMVKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHS----------------------------------------------------------------QDLLQNSPNSMSGVSNNPQGIVVPASALQQGN--IAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIP----------------------------------------------------------------QGAIQIQNTQ----VNLDLTSL----------LDNEDK-------------K---SKN-KRG-----VLPKHATNIMRSWLFQHLMHP-------YPTEDEKRQIAA-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDASNPDPAPKA------KKIKS-----QHRPTQR--FWPNSIAAGVLQQQGGTPGTNPDGSINLDNLQSLSSDNATMAMQQAMMAAHDDSLDGTE-------EEDEDDMEEEEEEEEELEEEADELQTTNVSDLGLEHSDSLE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [461]
'gi|17136216|ref|NP 476576.1| homothorax CG17117-PC, isoform C [Drosophila melanogaster] >gi|23170917|gb|AAN13474.1| CG17117-PC,'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAQPRYDDGLHGYGMD-------SGAAAAAMY-DPHAGHRPPGLQGLPSHHSPHMTHAAAAAATVGMHGYHSGAGGHGTPSHVSP--VGNHLMGAIPEVHKRDKDAIYE---------------------------------------------------HPLFPLLALIFEKCELATCTPREPGVQ---------------------------------------------------------------------------------------------GGDVCSSESFNEDIAMFSKQIRSQ-KPY-YTADPEVDSLMVQAIQVLRFHLLE--------------------------------------------LEKVHELCDNF--------------------------CHRYISCLKGKMPIDLVIDERDTTKPP-------------------------------------------------------------------------------ELGSANGEGRSNADSTSH-TDGASTPD-----------------VRPPSSSLSYGGAMNDDARSPGAGSTPGPLSQQPPALDTSDPDGKFLSSLNPSELTYDGRWCRREWSSPADARNADASRRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGK-------------K---NQK-KRG-----IFPKVATNILRAWLFQHLTHP-------YPSEDQKKQLAQ-DTGLTIL---------------QVNNW-FINARRRIVQPM--------IDQSNRAVYTPHPGPSGYGHDAMGYM-MDSQ-AHMMHRPPGDPG-----FHQGYPHYPPAEYYGQHL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [487]
'gi|78707304|ref|NP 476578.3| homothorax CG17117-PA, isoform A [Drosophila melanogaster] >gi|71854554|gb|AAN13475.2| CG17117-PA,'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAQPRYDDGLHGYGMD-------SGAAAAAMY-DPHAGHRPPGLQGLPSHHSPHMTHAAAAAATVGMHGYHSGAGGHGTPSHVSP--VGNHLMGAIPEVHKRDKDAIYE---------------------------------------------------HPLFPLLALIFEKCELATCTPREPGVQ---------------------------------------------------------------------------------------------GGDVCSSESFNEDIAMFSKQIRSQ-KPY-YTADPEVDSLMVQAIQVLRFHLLE--------------------------------------------LEKVHELCDNF--------------------------CHRYISCLKGKMPIDLVIDERDTTKPP-------------------------------------------------------------------------------ELGSANGEGRSNADSTSH-TDGASTPD-----------------VRPPSSSLSYGGAMNDDARSPGAGSTPGPLSQQPPALDTSDP---------------DGRWCRREWSSPADARNADASRRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGK-------------K---NQK-KRG-----IFPKVATNILRAWLFQHLTHP-------YPSEDQKKQLAQ-DTGLTIL---------------QVNNW-FINARRRIVQPM--------IDQSNRAVYTPHPGPSGYGHDAMGYM-MDSQ-AHMMHRPPGDPG-----FHQGYPHYPPAEYYGQHL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [472]
'gi|23495536|dbj|BAC20215.1| TALE homeodomain transcription factor Prep2 [Mus musculus] >gi|26350131|dbj|BAC38705.1| unnamed pro'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMQHASPAPAL---------T-MMATQNVPPPPY----QDSPQMTATAQPPSKAQAVHISAPSATASTPVPSAP--------IDPQAQLEADKRAVYR---------------------------------------------------HPLFPLLTLLFEKCEQATQ-----------------------------------------------------------------------------------------------------GSECITSASFDVDIENFVHQQEQEHKPF-FSDDPELDNLMVKAIQVLRIHLLE--------------------------------------------LEKVNELCKDF--------------------------CNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHS----------------------------------------------------------------QDLLQNSPNSMSGVSNNPQGIVVPASALQQGN--IAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIP----------------------------------------------------------------QGAIQIQNTQ----VNLDLTSL----------LDNEDK-------------K---SKN-KRG-----VLPKHATNIMRSWLFQHLMHP-------YPTEDEKRQIAA-QTNLTLL---------------QVNNW-FINARRRILQPM--------LDASNPDPAPKA------KKIKS-----QHRPTQR--FWPNSIAAGVLQQQGGTPGTNPDGSINLDNLQSLSSDNATMAMQQAMMAAHDDSLDGTE-------EEDEDDMEEEEEEEEELEEEADELQTTNVSDLGLEHSDSLE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [474]
'gi|2564942|gb|AAC47759.1| homothorax [Drosophila melanogaster]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD-------SGAAAAAMY-DPHAGHRPPGLQGLPSHHSPHMTHAAAAAATVGMHGYHSGAGGHGTPSHVSP--VGNHLMGAIPEVHKRDKDAIYE---------------------------------------------------HPLFPLLALIFEKCELATCTPREPGVQ---------------------------------------------------------------------------------------------GGDVCSSESFNEDIAMFSKQIRSQ-KPY-YTADPEVDSLMVQAIQVLRFHLLE--------------------------------------------LEKVHELCDNF--------------------------CHRYISCLKGKMPIDLVIDERDTTKPP-------------------------------------------------------------------------------ELGSANGEGRSNADSTSH-TDGASTPD-----------------VRPPSSSLSYGGAMNDDARSPGAGSTPGPLSQQPPALDTSDP---------------DGRWCRREWSSPADARNADASRRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGK-------------K---NQK-KRG-----IFPKVATNILRAWLFQHLTHP-------YPSEDQKKQLAQ-DTGLTIL---------------QVNNW-FINARRRIVQPM--------IDQSNRAVYTPHPGPSGYGHDAMGYM-MDSQ-AHMMHRPPGDPG-----FHQGYPHYPPAEYYGQHL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [458]
'gi|24645699|ref|NP 476577.2| homothorax CG17117-PB, isoform B [Drosophila melanogaster] >gi|23170916|gb|AAF54533.2| CG17117-PB,'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAQPRYDDGLHGYGMD-------SGAAAAAMY-DPHAGHRPPGLQGLPSHHSPHMTHAAAAAATVGMHGYHSGAGGHGTPSHVSP--VGNHLMGAIPEVHKRDKDAIYE---------------------------------------------------HPLFPLLALIFEKCELATCTPREPGVQ---------------------------------------------------------------------------------------------GGDVCSSESFNEDIAMFSKQIRSQ-KPY-YTADPEVDSLMVQAIQVLRFHLLE--------------------------------------------LEKVHELCDNF--------------------------CHRYISCLKGKMPIDLVIDERDTTKPP-------------------------------------------------------------------------------ELGSANGEGRSNADSTSH-TDGASTPD-----------------VRPPSSSLSYGGAMNDDARSPGAGSTPGPLSQQPPALDTSDP----------------GRWCRREWSSPADARNADASRRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGK-------------K---NQK-KRG-----IFPKVATNILRAWLFQHLTHP-------YPSEDQKKQLAQ-DTGLTIL---------------QVNNW-FINARRRIVQPM--------IDQSNRAVYTPHPGPSGYGHDAMGYM-MDSQ-AHMMHRPPGDPG-----FHQGYPHYPPAEYYGQHL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [471]
'gi|77553735|gb|ABA96531.1| BEL1-related homeotic protein 11, putative [Oryza sativa (japonica cultivar-group)]'                     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAYFTGGGAGTDVVQAAGTDGLQTL---------------------------------------YLMNPSYVGFT-------------------------------------------DAAAAPGGGAAAANMVFLNSAVSTLTPASFSHHHQP-----------------------------------TPAAQHFVGIPLQSGYNLWGPDATGGNDVSPPRHGAQQQA-----------------------------------------------PAAAGTSAAAVSPVLSLSSREAAPPVTVAAAA------------------------------------------------------------------------------------------------AAAAVPGGTDQEKVVMRSR---------------------------------------------------------YLKAAQELLDEAVSVSKGAATAVKKK---------------------------------EDSE---------------------------------------------------GGVSGGG----------GGAEDGGGSKSGAA----AEMSTAER---QELQMKKSKLLN------MLDE------------------------VEQRYRQ--YHRQMQGVAAAFEAA-------AGAGSATTYTSLALRTISRQFRCLRDAIAAQVRAASRGL---------------------------------------------------------------------------------------------GEDC-----GDDEGGGG-----------------------------------------------------------------------------------------------------GGRTTV-----GSRLRFIDHQLRQ-QR-AMQQLGMVHAAAAGGRRRRRVAAAA--WPP-RAR------RLRPPRLALRA-----FPPP-------IPQGFGQGH-AR-QANRPHQ---------------EPGTYVYVYVQYYVYVCLKYVYVFVGVELVHQREGEAV--EANGGGDVR-----RGDQGQG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGGARRGGGRRRRPWRRGGAGSE------------------------------------------------------------------------------------------------------------------------------------   [476]
;
END;


BEGIN CODONS;
	CODESET  * UNTITLED = Universal: all ;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
	EXSET * UNTITLED  =  1-725 741-873 879-882 895-938 950-975 997-1260 1262-1264 1268 1272-1277 1289-1293 1298-1304 1314 1317 1325-1339 1341 1345 1348-1795;
END;


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END;