#NEXUS 
[MacClade 4.08 registered to Hirai, ERATO]


BEGIN DATA;
	DIMENSIONS  NTAX=7 NCHAR=247;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
[                                                                                                                                             10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240     ]
[                                                                                                                                             .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .       ]

'gi|5020168|gb|AAD38033.1| phytochrome kinase substrate 1 [Arabidopsis thaliana]'                                    MDALVTTKKLMEPSKTLNMSINPKQEEFGDEKKMVKKAPEDPEIGVFGAEKYFNGDLSLTNPEVERTVVDSKQSAKKSTGTPSVRSESSWNSQLVNSCNSSFKEKKNSNGQIQKVTNNKKSSVDVDEKTSVKRSADPNISVITMRSSADMNTELIKIQKQEELSQRKSLEVFGSPVAIEKKSSVVQKKLPLPPWKSRTEEDDTKSEGSDSSSDLFEIEGLTGNPKPFLTRQGSDPASPTCYAPSEVS   [247]
'gi|21618120|gb|AAM67170.1| phytochrome kinase substrate 1, putative [Arabidopsis thaliana]'                                    MDAL-TQKNLMSGITNDVLGINKKA--------------EDLEISVFGAEKYFNGDLPDPEVPIERIFVGPKQSSKNSSETPSLRSESSWNSQNNSSCNSYFQEKDMSSNH---KVSNKKS--SVDVVDDKRRSSGLKKIKTQLSFSGDLSSEMKIHQQQQEAEQRKSLEIFGSPLI---EKRIIQKKFPWEYSSSAKKEEEEDGSVSDVSTDLFEIESLTGKAKPFLARQGSSPDSPDGYAPSEVS   [224]
'gi|15223704|ref|NP 172880.1| PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) [Arabidopsis thaliana] >gi|20148405|gb|AAM10093.1| unknown p'    MDAL-TQKNLMSGITNDVLGINKKA--------------EDLEISVFGAEKYFNGDLPDPEVPIERIFVGPKQSSKNSSETPSLRSESSWNSQKNSSCNSYFQEKDMSSNH---KVSNKKS--SVDVVDDKRRSSGLKKIKTQLSFSGDLSSEMKIHQQQQEAEQRKSLEIFGSPLI---EKRIIQKKFPWEYSSSAKKEEEEDGSVSDVSTDLFEIESLTGKANPFLARQGSSPDSPDGYAPSEVS   [224]
'gi|18394658|ref|NP 564064.1| unknown protein [Arabidopsis thaliana] >gi|6730703|gb|AAF27098.1| Unknown protein [Arabidopsis tha'    M---DAEKKSAHFRQISSYKPQLLVLSSIQENPSSKISENDAEIGVFGAEKYFSMKNPHPHPHPQLTKTTSSRSKTSRHGTPSVRSESSCNSQMNDTSIS------------------------------TVHTDPKNSCKSRNSDRDFVAY-RKHNDKPRLHFEAKKADFHAQEKIRSDIAMNLERKLSLLTWDAIPNNTQEEETASVASSDLFEIENITS----------------SVYEPSEAS   [197]
'gi|15237647|ref|NP 196039.1| unknown protein [Arabidopsis thaliana] >gi|51315394|gb|AAT99802.1| At5g04190 [Arabidopsis thaliana'    MRDALDPYIKILQNRSNDIDVSFSSYLKPDNNEQQQKENEDTELSIFEARSYFSENCQTRNLSGPRFSSVASAKVSSFTVGQTASSEASWNSQ---------------NRQGSDRDGRRSSPRIAVPKTGSDRIVSNRIVHSHQTISSPEPI-TRSIDYTANKEARAPVSNFSFPTLETSQLSENPKNPVLNHIKPVRIVIIDEEATSDASSDLFEIESFSTQTAARP------TVSEYGYEPSEAS   [225]
'gi|87162858|gb|ABD28653.1| phytochrome kinase substrate 1-like protein, putative [Medicago truncatula]'                             MDCNLPPKSPTILRDIDASFSSYLTPQKPNNHNHHHKLDPTSELSIFDAHKYFNEGYSSASSMDGYANIRNYRARSFHAATPTASSEASWNSQ-------SVNIKNPSNPNPNNSNKHKSS-----VNEKKLTELPKNNIKIPSPISPPPPM-DQTQNHVVTKSQRFQPVVTTTVRVKNGIVLEDPPRESLEVFRPPEEVIDDNDAASDASSDLFEIESFSTATQSSYSAAVYRTAMTDCYEPSEAS   [234]
'gi|37534212|ref|NP 921408.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] >gi|15451558|gb|AAK98682.1| Hypothet'    MYEHQLFGRRRNVAGGGGGFATYLDLVREEGDAGKMPPRADGELDVFAAERYFKGAMAAAAARPAVAVSRPAPWTTRASVASAGSSGSTANSQRDKCCAHATEPAGDPGDELPPATASRIEWYRDLRLDKAGDGVSHGGVVAAGLPPNLNSI-TAATSEYSSSSFRSNFTLLAPVKV----------------------DDDDDDVGSESSSDLFEIKSLM-------------IDDCRGYEPSEAS   [211]
;
END;


BEGIN CODONS;
	CODESET  * UNTITLED = Universal: all ;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
	EXSET * UNTITLED  =  2-7 26-39 94-133 153 178-199 222-239;
END;


BEGIN MacClade;
	Version 4.0  87;
	LastModified -1055338144;
	FileSettings editor  '0' '0' '1' '1';
	Singles 100;
	Editor 00011001111111100100010010 '1' '16' Geneva '14' '780' '1' all;
	EditorPosition  '44' '29' '964' '1573';
	TreeWindowPosition  '46' '6' '993' '1630';
	ListWindow Characters closed Geneva '9' '50' '10' '273' '359' 000;
	ListWindow Taxa closed Geneva '9' '50' '10' '177' '490' 100000000;
	ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ;
	ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ;
	ChartWindowPosition  '52' '30' '968' '1620';
	StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220';
	WindowOrder  Data;
	OtherSymbols &/ 00 ?-;
	Correlation  '0' '0' '1000' '0' '0' 10011010;
	Salmo 00000001;
	EditorFile  '4';
	ExportHTML _ MOSS  '100' 110000;
	PrettyPrint 10;
	EditorToolsPosition  '861' '42' '115' '165';
	TreeWindowProgram 10;
	TreeWindow 0000;
	Continuous  '0' '3' 1;
	Calculations 0000001;
	SummaryMode  '0' '0' 0;
	Charts  Geneva '9' (normal) 0010;
	NexusOptions  '0' '0' '50' 001011001;
	TipLabel  '1';
	TreeFont  Geneva '9' (normal);
	TreeShape  1.0 1.0 0100;
	TraceLabels 0101;
	ChartColors  '0' '0' '65535' '9' '0' 1;
	ChartBiggestSpot 1;
	ChartPercent 10;
	ChartBarWidth  '10' 1;
	ChartVerticalAxis 10101;
	ChartMinMax  '0';
	TraceAllChangesDisplay  '1' 1;
	BarsOnBranchesDisplay  '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101;
	ContinuousBranchLabels 0;
	AllStatesBranchLabels 1;
	IndexNotation  '2' 1;
	PrintTree  10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '0' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000;
	MatchChar 00 .;
	EntryInterpretation 01;
	ColorOptions 00;
	TreeTools  '0' '5' '4' '0' '10' '4' '0' 00100111111101110;
	EditorTools  '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011;
	PairAlign  '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010;
	BothTools  '1';
END;