#NEXUS [MacClade 4.08 registered to Hirai, ERATO] BEGIN DATA; DIMENSIONS NTAX=61 NCHAR=283; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|22330928|ref|NP 566344.2| HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin:ferredoxin oxidoreductase [Arabidopsis thaliana] >gi' AVSYKEFAESALEETRKRIVLEPSHLQEKYSSMTGLDGKTELQMLAFKSSKIRLLRSMAIENETMQVFDFAGFMEPEYDTPIFCANFFTSTNVNIVVLDLNPLHQLTDQTDYQDKYYNKIMSIYHKYAETFPWGGKLTGESIKFFSPLVMWTRFSSSKEKHKALFSAFLEYYQAWLEMTIQVRE-EMEPSHVRANCEAQHKYLTWRAQKDPGHGLLKRLVGEAKAKELLRDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRPWDLTGQFIG [282] 'gi|21618130|gb|AAM67180.1| unknown [Arabidopsis thaliana]' AVSYKEFAESALEETRKRIVLEPSHLQ--YSSMTGLDGKTELQMLAFKSSKIRLLRSMAIENETMQVFDFAGFMEPEYDTPIFCANFFTSTNVNIVVLDLNPLHQLTDQTDYQDKYYNKIMSIYHKYAETFPWGGKLTGESIKFFSPLVMWTRFSSSKEKHKALFSAFLEYYQAWLEMTIQVRE-EMEPSHVRANCEAQHKYLTWRAQKDPGHGLLKRLVGEAKAKELLRDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRPWDLTGQFIG [280] 'gi|62149358|dbj|BAD93479.1| phytochromobilin synthase [Lycopersicon esculentum] >gi|62149356|dbj|BAD93478.1| phytochromobilin s' GVSYKKLIHFALEETNTHTLLSPSPLQEKYSSLLSMDDKTELQMLSFEAHKIRLLRSLCIETDGMQVLDFAAFPKPEFDLPIFCANFFTTAKMNIIVLDLNPLHDIMDQEDYKEKYYKDLITLGLKYSKLLPWGGKLTSESLRFFSPIVIWTRFSSSPHNHSVLFSAFKDYYQAWLGLMDRSEG-ETDASQIACNCEAQHRYLTWRSEKDPGHGVLKRLIGEDLAKDVITKFLFNGVNELGNKTFLDYFPEYRCEDGKVNEKRSMIGKSFENRPWNARGEFIG [282] 'gi|57900463|dbj|BAD87875.1| putative phytochromobilin synthase [Oryza sativa (japonica cultivar-group)]' GLLYHKFVSFALEETRLRTTLTPHPSQEKFKSIKPNDDNTVFNALSFSAPKIRLLRSLTIEKNSYQVLDFAAFSEPEYDLPIFCANVFTTHAQSIVVLDLNPLYDTTVHKDYKDKYYRSIMPLVHKYNELLPWGGKITSESLKFFSPIVIWTIFESTEHNHHVLHSAFVDYYKVWLELMDQAIK-ENNKATIARNQEEQHKYLTWRAEKDPGYPLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKRSMIGKSFETRPWDANGEFIG [282] 'gi|49472889|gb|AAT66259.1| phytochromobilin synthase [Zea mays]' GCSYQKFVHFALEQTRHRSTLVPHPSQEKFRFIKANEDNTVLNALSFSTSKIRLLRSLTIEKNSVQVLDFAAFSRPEYDLPIFCANAFSSPARSIVVLDLNPLYDTTEHKDYREKYYRALMPLVHKYSELLPWGGKITSESLRFFSPIVIWTVFEPSEANHQALYSAFVDYYMVWLEFMDGAVR-ESSKEKIDRNREAQHKYLTWRAEKDPGYPLLKKLIGESGAKDLVREFLFEGVGSLGTKSFLEYFAEYAQEDGTVNKKRSMAGKSFGTRPWDAHGLFVG [282] lcl|Smo_HY2_2_1_unnamed_protein_product AALYDKFVDFAVDSV-SRFLVEPDEIVKNHVEILAEDRRTVIKSHAYQSKKIRMLRSAVIDGEAMQVFNMAIFPRPCFDLPIFCADFFTSSSRSIFVLDLNPLYNVEADKAYKDKYYSELLPLVKKHSKLLPWGEKLTGESLQFFSPIVLWSKPESNKEVDEAIYLAFQDYIMAWTRIIGAATS-ETDIDAICRNKVAHHRYLTWRASKDPGRPVLRRLLGEDRCEHYIHEFLFNGLHDLGTSSFTEYFPEYS------NGVCYVLFRGSESAPYHSTDDYEP [275] 'gi|13751784|gb|AAK38589.1| phycoerythrobilin:ferredoxin oxidoreductase [Nostoc punctiforme] >gi|23127198|ref|ZP 00109073.1| COG' VTLYQPFLDYAIAYMRSRLDLEPYPIPTGFEGKGKNQEEVVTTSYAFQTAKLRQIRAAHVQGNSLQVLNFVIFPHLNYDLPFFGADLVTLPGGHLIALDMQPLF---RDDSYQAKYTEPILPIFHAHQQHLSWGGDFPEEAQPFFSPAFLWTRPQETAVVETQVFAAFKDYLKAYLDFVEQAEA-VTDSQNLVAIKQAQLRYLRYRAEKDPARGMFKRFYGAEWTEEYIHGFLFDLERKLTVVK--------------------------------------- [240] 'gi|67920692|ref|ZP 00514211.1| Ferredoxin-dependent bilin reductase [Crocosphaera watsonii WH 8501] >gi|67856809|gb|EAM52049.1|' MTLYQPFLDYAISLMQDQLSLQPYPIPEGFEGKGKRQQRVVTSSYAFKSPKLRQIRAAHVQGSSLQVLNFVIFPQLTYDLPFFGADLVTLPGGHLIALDMQPLF---HDKAYQQQYTEPILPLFKSHQQHLPWGGDFPEEAKPFFSPAFLWTRPQETEAVITRVFSAFKDYLQAYLNFVEQAKP-ITDSQRLEDILQAQRRYIAYRADKDPARGMFTRLYGQAWTEEYIHGFLFDLERQMVTV---------------------------------------- [239] 'gi|34223769|gb|AAQ63054.1| PebB [Fremyella diplosiphon]' LTLYQPFLDYAIALLQERLNLQPYPIPTGFEGKGKHQEEVLTTSYAYQSSKLRQIRAAHVQGKSLQVLNFVIFPHLNYDLPFFGGDLVTLPGGHLIALDMQPLF---RDDLYQAKYTQPILPIFQTHQQHLPWGGDFPEEAQPFFSPAFLWTRPQQTELVETHVFAAFKDYLNAYLDFVDQAQP-ITDSKHLAEIEQAQLRYLRYRAEKDPARGMFTRFYGTEWTEEYIHGFLFDLERKLTSAIK-------------------------------------- [241] 'gi|71677063|ref|ZP 00674802.1| Ferredoxin-dependent bilin reductase [Trichodesmium erythraeum IMS101] >gi|71669774|gb|EAO26445.' VNLYQPFLDYALTKLKEELELQPYPIPSGFEGKGKKQQEVQTTSYAHCSPKLRQIRAAHVQGSALQVLNFVIFPHLNYDLPFFGADLVSLPGGHLIALDMQPLF---RDNLYQKKYTEPIWETFQKHQKYLPWGGDFPEEATPFFSPAFLWTRPQKTELVETRVFEAFKDYLQAYLIFVKQTEQ-ITNSEKLAEIKEAQLRYLRYRAEKDPARKMLTRFYGHEWTEEYIHGFLFDLERKLALNPA-------------------------------------- [241] 'gi|62318103|emb|CAH25338.2| ferredoxin oxidoreductase precursor [Guillardia theta]' SDIYKPFWEWAAKTIKERLDLVSYPIPDGYLGKGKRESLAWTQSYGYQTKKMRQIRAAHVNGASLQVLNLVFFPHMNYDLPFLGLDLVTLPGGHLIAIDMQPLF---QTEEYKKKYAEPCMDMYQKHVKNLPWGGDFPEEAKQYFSPVFLWTRPQEDKQVETYVFEAFKDYINKYLDFVEAAKP-VTDPDHLARIRERQLSYLQYRAEKDPARGMFTRMYGPEWTERYIHGFLFDLEEKMESGEYKTGELLQCSDPLNFQPTPL------------------- [260] lcl|Smo_HY2_3_1_unnamed_protein_product AALYDKFVDFAVDSV-SRFLVEPDEIVKNHVEILAEDRRTVIKSHAYQSKKIRMLRSAVIDGEAMQVFNMAIFPRPCFDLPIFCADFFTSSSRSIFVLDLNPLYNVEADKAYKDKYYSELLPLVKKHSKVISQASKILSMLLR-VAP---------------------------------------------------------------------------------------------GCSCF-------------------------------------- [150] 'gi|33635538|emb|CAE21862.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9313] >gi|33863954|re' EWRWAPFLSHAINAFIPL-KPEPYPVAPEFLGSKSQPIRVTTCTWACRTKKFRQVRAACVEGRSASVLNFVINPYHTFDLPFFGADLVTLPSGHLLALDLQPAI---TSDEHTKQVWERLMPIFEHWRVHLPEGGPIPEEAKPYFSPGFLWTRLPLSQLIDEVIMPAFKDYLNLYLDLVEMAEE-VSP-QRAFKLLEGQKRYLSYRAKKDPARAMLARFHGHQWTESYIHNVLFDL----------------------------------------------- [230] 'gi|88807837|ref|ZP 01123348.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. WH 7805] >gi|88787876|gb|EAR19032' GWRWEPFLMEAVSGLKSL-NPKPYPVEPVFLGSASRPVQAHTQVWACSTDKCRQIRAACVEGSAASVLNLVINPRTSYDLPFFGADLVTLPNGHLIALDLQPAL---KTDRHTEAVWEQLTPIFQRWRDRLPGGGPIPEEAEPFFSPCFLWTRLPLGALIKDVVFPAYLDYLTLYLDLMKNADP-VSN-ERESRLLDGQRRYTTYRAEKDPARGMLGRFHGKEWTERLIHEVLFDLH---------------------------------------------- [231] 'gi|72002855|gb|AAZ58657.1| phycoerythrobilin:ferredoxin oxidoreductase PebB [Prochlorococcus marinus str. NATL2A] >gi|72383005|' NWRWACFLDETIKAFSTF-QTRPYQIDNDFLGSSSNPKKVILETWGLKMEKIRQARCACLQGEITSVMNLVISPLNNYDLPFFGADFVTLPNGHLIALDLQPAL---KDDIHTQHVWNKLKPIHAHWQSKIPSGGDIPSDARQYFSPAFLWSRIPLGNLITQTIKPAFDEYLNCFFDLLRDAKI-TSK-ERSFQLLNGQKKYMRYRAEKDPARGMLRSFFGEVWTESYINNILFDLK---------------------------------------------- [231] 'gi|8745185|emb|CAB95701.1| hypothetical protein [Prochlorococcus marinus] >gi|28380111|sp|Q9K4U5|PEBB PROMA Phycoerythrobilin:f' DWIWTPFFNDLVDKLSVF-EIEPYPVSHDFLGSRRNPVHVTTLTWAAKFEKIKQVRLACIKGESLSVFNLLIHPLNDYDLPFFGADFVTLPNGHLLALDLQPAL---KLDNHTENVWPRLIPLHDHWQSLLPSGGEIPKEAEPYFSPGFLWSRLPLSNIISEILRPAFGEYLSLYIELLHIAKP-LKK-ERALKILEGQKAYINYRSTKDPARAMLCRFYGKEWTEDYIHKVLFNI----------------------------------------------- [230] 'gi|33633331|emb|CAE08536.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. WH 8102] >gi|33866553|ref|NP 898112.' GWRWQPFLDEASAALKPF-NPSPYPIAETFLGSKAKPVPVTTATWACSTDKLRQVRCACVEGMAASVLNFVINPSCRFDLPFFGADLVTLPNGHLLALDLQPVD---KADPHTQPVWERLMPLFERWQAELPDGGPIPEEAQPYFSPAFLWTRIPLGELIERVIRPAFIDYLQLYLNLVAEAEP-VSD-DRAELLLSGQKRYTAYRAEKDPARGMLTRFYGSEWTESYIHGVLFDLEDAA------------------------------------------- [234] 'gi|15021777|gb|AAK77916.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. WH 8020] >gi|28381383|sp|Q02190|PEBB' GWSWQPFLEDAIKRLEGL-NVEPYPVPDRFLGSKSKSIPVTTATWACKTEKFRQVRAACVSGSAASVLNFVINPKSTYDLPFFGGDLVTLPAGHLLALDLQPAI---KTDEHTTHVWDRLIPIFERWRDQLPYGGPIPEEAQPFFSPGFLWTRLPLGELIQSIVRPAFNDYLDLYLELAASAER-VTD-ERSEVLLQGQRKYTDYRAEKDPARGMLTRFHGSEWTEAYIHTVLFDL----------------------------------------------- [230] 'gi|78196433|gb|ABB34198.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. CC9605] >gi|78211974|ref|YP 380753.1|' GWRWQPFLDTAVAALSSL-QPDPYPIAERFLGSKAKPVPVRTATWACSTEKLRQVRCACVEGAAASVLNFVINPSSRFDLPFFGADLVTLPNGHLLALDLQPVD---KTDPHTGPVWQRLMPLFERWRAQLPDGGPIPEEAQPYFSPAFLWTRIPLGALIDRVIRPAFADYLQLYLALVEEAQP-VDH-ERAAHLLLGQKRYTAYRAEKDPARGMLTRFYGSEWTESYIHGVLFDLEEATATSLSPQGS---------------------------------- [243] 'gi|84519099|ref|ZP 01006448.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9211] >gi|84513848' EWRWSEFLDDAIKALELF-DIEPYPIPEEFLKFKNNQIKVKALTWACRTTKIRQARAACIEGPAASVLNLVINPFHNFELPFFGADFVTLPSGHLLALDLQPVL---KKDEHNQKVWSKLIPIHDHWQSLLPSGGPIPQEAETFFSPGFLWTRLPLDKLISKVIRPAFQEYLTLYIDLISDAQE-VSK-ERSLEILSGQKAYINYRAEKDPARGMLARFFGKDWTEQYIHKVLFDL----------------------------------------------- [230] 'gi|154564|gb|AAA27344.1| homologous to ORF236; ORF257' GWSWQPFLEDAIKRLEGL-NVEPYPVPDRFLGSKSKSIPVTTATWACKTEKFRQVRAACVSGSAASVLNFVINPKSTYGLPFFGGDLVTFPAGHLLALDLQPAI---KTDEHTTHVWDRLIPIFERWRDQLPYGGPIPEEAQPFFSPGFLWTRLPLGELIQSIVRPAFNDYLDLYLELAASAER-VTD-ERSEVLLQGQRKYTDYRAEKDPARGMLTRFHGSEWTEAYIHTVLFDL----------------------------------------------- [230] 'gi|13751856|gb|AAK38598.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Nostoc punctiforme]' CSMYKPFLEFLEKELFQRFDLQSRVIPPGLEVSDRGRNPATIRSWCYQSQELRKIRYTYIDGESAQIFNSVVYPSHNYDLPLLGIDFLSFGKVKNLVLDFQPLF---QDEDYQNKYIAPLKYLHNKYPDLAQNLEMKFYDANQYFSKYLLFAKTDA-ETVSTRVFEAFQDYLNLYWQMLADAQA-LHDPEDIQRIVKAQKDYDQYSADRDPASGLFSSYFGHEWAERFLHEFLFEDAVPLAVSASKR------------------------------------ [242] 'gi|53687950|ref|ZP 00109074.2| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctiforme PCC 73' --MYKPFLEFLEKELFQRFDLQSRVIPPGLEVSDRGRNPATIRSWCYQSQELRKIRYTYIDGESAQIFNSVVYPSHNYDLPLLGIDFLSFGKVKNLVLDFQPLF---QDEDYQNKYIAPLKYLHNKYPDLAQNLEMKFYDANQYFSKYLLFAKTDA-ETVSTRVFEAFQDYLNLYWQMLADAQA-LHDPEDIQRIVKAQKDYDQYSADRDPASGLFSSYFGHEWAERFLHEFLFEDAVPLAVSASKR------------------------------------ [240] 'gi|78713568|gb|ABB50745.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9312] >gi|78780069|ref' DWKWHNFLKYLVNNLSKY-NCLEKKIPSEYSGSKKSKKNVNLSTWGVTHKKRIQARAVCINSPNYSVLNFLIIPNTIYNVPFFGVDFVSLPNSHLLVLDFQPSL---KIQNYNNELLEKLIKLKNHCHSSLPLAEKMSADVARFFSPGVIWSKLPKEFLIANQLYTSFKEYLDLYLEILFESQQ-VNL-NLQKELINGQNNYLKYRIDNDPARPMLSSLFGKEFTESLIKEVLFTT----------------------------------------------- [230] 'gi|78169767|gb|ABB26864.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. CC9902] >gi|78185473|ref|YP 377908.1|' GWGWQPFLEDAVQALQPL-NLEPYPVANDFLGSKAKPITVTTATWACKTDKFRQVRAACVYGTAASVLNFVINPSARFDLPFFGGDLVTLPSGHLLALDLQPAD---KSDEHTQQVWEKLIPIFERWRSKLPDGGPIPEEAQPFFSPGFLWTRLPLGQLINSVVRPAFNDYLSLYLELAEAAKP-VGD-DRRDHLLKGQRRYTDYRAEKDPARGMLTRFHGSDWTEKYIHTVLFDL----------------------------------------------- [230] 'gi|67923244|ref|ZP 00516730.1| Ferredoxin-dependent bilin reductase [Crocosphaera watsonii WH 8501] >gi|67854921|gb|EAM50194.1|' --MFQPFLQHLEKELFSRFDLSSRPIDPELEISQRGKNPAMIESWCYQCPQFRKIRYTYINGETAQIFNSVLYPSYEYDLPLLGVDLLAFGKKKILVLDFQPLF---RDEDYLEKYIEPIAPIRAKYNELAQDLEMKFYDANQYFSPYLLFAKTDA-ETVVNRLFPAYQEYLQLYWQLLEQAEP-KTDSASIERITKAQKDYDQYSAERDPASGLFRSYFGSEWAEEFVHNFLFEDSVPVAVK---------------------------------------- [236] 'gi|67925729|ref|ZP 00519037.1| Ferredoxin-dependent bilin reductase [Crocosphaera watsonii WH 8501] >gi|67852421|gb|EAM47872.1|' --MFQPFLQHLEKELFSRFDLTSRPIAPELEISQRGKNPAMIESWCYECPQLRKIRYTYINGETAQIFNSVIYPNHQYDLPLLGIDFLAFGKKKILVLDFQPLF---RDSDYLKKYIEPMAPIRAKYNELAQDLEMRFYDANQYFSPYLLFARTNP-QTVIEQLFPAYQEYIQLYWQLVEQAEP-KTESTELERIIKAQKDYDQYSAERDPASGLFNSYFGHEWSEKFLHKFLFEDAVAVAAKKS-------------------------------------- [238] 'gi|33634366|emb|CAE20051.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986]' EWRWAKFIKFLISQLDNY-HCVEHKIASDFSGSKKSKKNINLFTWGATHQKRINARAVCINSPNYSVLNFLIIPKTSYNIPFLGVDFVSLPTSHLLVLDFQPSL---KVENFNSELLEQIIKLKKSCHSSLPVAEKMSEDVAKFFSPGLIWSRLAKHNLIENQLYDSFKEYLNLYLKTLFESEE-VGH-GLQQELINGQNDYLNYRRDNDPARPMLSSLFGKDFTESLINKVLFSTNKVL------------------------------------------- [234] 'gi|34223768|gb|AAQ63053.1| PebA [Fremyella diplosiphon]' --MYKCFLEHLEQSLLQRFTLESRPIPPGLDVSDRGRNPATIQSWCYQCPELRKIRYTYIDGASAQIMNSVIYPSHHYDLPLLGIDFLSFGQVKNLVMDFQPLF---QDEAYLKKYIHPLQTLHDKYPDLAQGLEMKFYDANQYFSKYLLFAKTDP-ETVKTRVFEAFKDYLNLYWQMLAQAEP-LIDQSDIQRIVKAQKDYDQYSADRDPASGLFSSYFGHQWSERFLYEFLFEDAVPLATVVAK------------------------------------- [239] 'gi|71677064|ref|ZP 00674803.1| Ferredoxin-dependent bilin reductase [Trichodesmium erythraeum IMS101] >gi|71669775|gb|EAO26446.' --MYRPFLEYLEKELFSKFDLRSRPIPAGLEVSNRGKNKARIQSWCYECTELRKIRYTYIDGATAQVFNSVIYPSYCYDIPLLGIDLLSFGKNKILVLDFQPLF---QEESYLAKYIEPMRSLREKYNDLAQNLEMKFYDANQYFSKYLLFAKTDA-QTVQTKFFQAYKDYISLYWQMLHEAEI-IQTEAEIQKIVKAQKDYDQYSAERDPASGLFSSYFGHEWSEKFLYQFLFEDAVPLAVPTSTR------------------------------------ [240] 'gi|15021775|gb|AAK77915.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. WH 8020] >gi|401518|sp|Q02189|P' --MFDSFLNELHSDITKR-GGSPLPLPEGLEECRSSKSSSVIQSWLWDVPGFRRWRVTRLDGDSLQVFNSVAYPDYNYDHPLMGVDLLWFGARQKLVLDFQPLV---QDKDYLDRYFSGLKELNQRFPDLNGEETMRSFDPNQYFSSWLLFCRGGA-EQADLSLPKAFSAFLKAYWDLHDNAKS-IPSTIPPEEVKNLQDKYDIYSAERDPAHGLFTSHFGKDWSNRFLHEFLFPASSSHK------------------------------------------ [233] 'gi|322040|pir||A46448 orf236 3'' of cpeB - Synechococcus sp' --MFDSFLNELHSDITKR-GGSPLPLPEGLEECRSSKSSSVIQSWLWDVPGFRRWRVTRLDGDSLQVFNSVAYPDYNYDHPLMGVDLLWFGARQKLVLDFQPLV---QDKDYLDRYFSGLKELNQRFPDLNGEETMRSFDPNQYFSSWLLFCRGGA-EQADLSLPKAFSAFLKAYWDLHDNAKS-IPSTIPPEEVKNLQDKYDIYSAERDPAHGLFTSHFGKDWSNRFLHEFLFPASSSHK------------------------------------------ [233] 'gi|84519098|ref|ZP 01006447.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9211] >gi|84' --MFDPYLDELNKLLIVN-HGEILLVPDGLQECYSKKQDAVIRSWLWSVPGFRRWRVTRMDGDKLQVFNSVAYPDYLNEQPIMGIDLLWFGIKNKLVLDFQPLV---QEKSYFDRYYQGLKSLKARYSDFNSKDNVRAYDLSNYFSPWVLLCKGDL-FQASSSLPFVFSEFLNAYFDISNNFKK-YNSRIEPNRVKELQISYDIYSSAHDPAHGLFKSYFGKQWSERFLKEFLFPHSIAKDKT---------------------------------------- [235] 'gi|78196434|gb|ABB34199.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. CC9605] >gi|78211975|ref|YP 380' --MFDPFLEELLSGIKAR-GAVPVEVPHGLEHNQSSKRSSTIKSWLWDVPGFRRWRVTRLDGDSLQVLNSVAYPDYTYDHPLMGVDLLWFGAKQKLVLDFQPLV---QDKDYLERYFDGLKSLNAQFPDLNGEETMRSFDPNQYFSSWLLFCRGGA-EQATSSLPTAFSAFLKTYWDLHDKAVK-IPSSINPIEVAQLQKNYDIYSAERDPAHGLFTSHFGSEWSDRFLHEFLFPASQPK------------------------------------------- [232] 'gi|88807836|ref|ZP 01123347.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. WH 7805] >gi|88787875|gb|EA' --MFDPFLDALQQGIQDR-GGTLLPLDQDLAVQHSERNQSSIRSWLWNVPDFRRWRVTRLDGDSLQVLNSVAYPEHTLDHPILGIDLLWFGARQKLVLDFQPLV---QAPDYMDRHFSGLKALHQRFPDLSGEETMRSFDPHQYFSPWLLFCRGGA-DQATRSLPSAFDSFLDCFWRMHDASAS-APSLLPPEQVADLQVAYDRYSAERDPAHGLFTSHFGKAWSDRFLHEFLFPSAQR-------------------------------------------- [231] 'gi|51316325|sp|Q7NL66|PEBA GLOVI 15,16-dihydrobiliverdin:ferredoxin oxidoreductase' --MYRPFLEHLQQKLQSSFDLQSLTIPAGLDISERGRESTTIRSWCYTCSELRKIRYTYIDGEHAQVFNSVIYPAHRYDLPLLGIDLLAFGKKKNLVLDFQPLF---RDKAYLARYIEPMRILRERYGDVAQDVEMKFYDANQYFSKYLLFARTDA-ETVAGRVFTAYCDYLDLYWQLLASAAP-LGDAQDIRRIVKAQKDYDQYSADRDPASGLFSSYFGHEWAERFLYEFLFEDAVPLAVGQPGR------------------------------------ [240] 'gi|35211824|dbj|BAC89201.1| 15,16-dihydrobiliverdin:ferredoxin oxidoreductase [Gloeobacter violaceus PCC 7421] >gi|37520829|ref' QNMYRPFLEHLQQKLQSSFDLQSLTIPAGLDISERGRESTTIRSWCYTCSELRKIRYTYIDGEHAQVFNSVIYPAHRYDLPLLGIDLLAFGKKKNLVLDFQPLF---RDKAYLARYIEPMRILRERYGDVAQDVEMKFYDANQYFSKYLLFARTDA-ETVAGRVFTAYCDYLDLYWQLLASAAP-LGDAQDIRRIVKAQKDYDQYSADRDPASGLFSSYFGHEWAERFLYEFLFEDAVPLAVGQPGR------------------------------------ [242] 'gi|72002856|gb|AAZ58658.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. NATL2A] >gi|72383006|ref|Y' --MFNDLLSELTKNILEH-GGKKLIVPNEFCECVSKQGNCKLNSWLWDVPGFRRWRVTRLDGDRLQVLNSVAYPNEQNDMPIMGIDLLWFEKKQKLILDFQPLV---QDKEYLDRYFDGLKSLKKSFNEFNSDMKSNIYDPTKYFSPWALFCKGGN-FEAENILPKIFSSFLKCYWKNLDLSKA-NENHIKSQEVSILHIDYDKYSAEKDPAHGLFSGFFGKEWSEKYMKEFLFPLSLENINP---------------------------------------- [235] 'gi|32401346|gb|AAP80845.1| ferredoxin oxidoreductase [Griffithsia japonica]' PLFFMPFVTHQLDGLQTLSGLEDIPFEEKFSYQQSKKPSARIESWLFKSDIFRKIRLTYIDGWKAQVFNSVWYPSPEYDLPVLGIDFLSFGKKKVLVMDFQPLM---QEESYLNKYCAPMEDVRNKYDGLSGKMSKRFYDEALFFSQQLIFAKFDNQEPIESQLLPAFKDYVNHYKQMITAATP-DSSEDNVKRVLELHR----------------------------------------------------------------------------------- [196] 'gi|33633330|emb|CAE08535.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. WH 8102] >gi|33866552|ref|NP 8' --MFDPFLEELQTGIQAR-GGISVEVPAGLEHNQSQKGSSTIQSWLWQVPGFRRWRVTRLDGDSLQVLNSVAYPDFDLDHPLMGVDLLWFGARQKLVLDFQPLV---QDKDYLDRHFDGLKDLNARFPDLNGEETMRSFDPNQYFSSWLLFCRGGS-EEADRSLPKAFSAFLKAYWGLHDEASK-EPSSISPGDVERLQNAYDVYSAERDPAHGLFTSHFGKEWSDRFLHEFLFPASQPA------------------------------------------- [232] 'gi|78713569|gb|ABB50746.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9312] >gi|78780070|ref' --MFDSLVDFLKTNIDEL-NGHELQISNEFKEHHNKDSKYIIKNWLFSSPEYRKWRITRLDGKNIQVFNTVAYPNFDSELPILGADILWFGTAKKLILDYQPLI---QENKYLEKYCSSLGMIKKKYSAFDNNKMKNIYDSKKYFSPWVIICRGNK-LNLDRDLNDVFHAFINNYLNL-NKSNP-VNQFLNLEEIKINQIKYDKYSFEKDPADKLFKSFFGEKWTKKFINKFLFTLNNEIIL----------------------------------------- [233] 'gi|33634367|emb|CAE20052.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986]' --MFESLKNFVKTNIEDL-DGKELEISKEFKEHHNKDSKYIIKNWIFESQQYRKWRITKLDGDKLQVFNTVAYPNFKSEFPILGADILWFGTSQKLIFDYQPLI---QEKKYLQKYCSSLDFIKNQYSVFDNHKMKNIYDSKKYFSPWVMICRGNK-LNLDRDLNNIFCSFVSNYLTI-NKLHQ-NNQFLDLEQIKNNQIDYDKYSAEKDPADKLFKTFFGETWTENFINNFLFTLNHNPLK----------------------------------------- [233] 'gi|33635537|emb|CAE21861.1| phycoerythrobilin:ferredoxin oxidoreductase [Prochlorococcus marinus str. MIT 9313] >gi|33863953|re' --MFDPLLEKLHSSIRIQ-GGETAAVPDGLRECRNEKKNSWIRSWLWQVPGFRRWRVSRLDGESLQVLNSVAYPNYNIDQPLMGLDLLWFGKRQKLILDFQPLI---QDQSYLERHFQGLKTLQNRFPELSGEETMRLFDPNQYFSPWLLFCRGGA-EKATNSLPEAFNAFLHCYWELHQQNSD-KASLIPAAEVKQLQIAYDIYSAERDPAHGLFTSHFGKAWSDRFLHEFLFPASTKADSSPPADADDDLPR----------------------------- [246] 'gi|13774105|gb|AAK38141.1| putative 15,16-dihydrobiliverdin:ferredoxin oxidoreductase [Prochlorococcus marinus]' --MFESLKNFVKTNIEDL-DGKELEISKEFKEHHNKDSKYIIKNWIFESRQYRKWRITKLDGDKLQVFNTVAYPNFKSEFPILGADILWFGTSQKLIFDYQPLI---QEKKYLQKYCSSLDFIKNQYSVFDNHKMKNIYDSKKYFSPWVMICRGNK-LNLDRDLNNIFCSFVSNYLTI-NKLHQ-NNQFLDLEQIKNNQIDYDKYSAEKDPADKLFKTFFGETWTENFINNFLFTLNHNPLK----------------------------------------- [233] 'gi|78169766|gb|ABB26863.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. CC9902] >gi|78185472|ref|YP 377' --MFDPFLDQLHADITAR-GGTPAEVPDGLAECHSAKGASVIRSWLWQVPGFRRWRVTRLDGESLQVLNSVAYPDYGFDHPLMGVDLLWFGARQKLVLDFQPLV---QNEAYFDRYFDGLKALNRQFPDLNGEETMRSFDPNQYFSSWLLFCRGGA-EQAQTSLPPAFSAFLKAYWALHDAAKN-NPATIAADEVKRLQENYDVYSAERDPAHGLFTSHFGKNWSDQFLHEFLFPASGQS------------------------------------------- [232] 'gi|8745184|emb|CAB95700.1| hypothetical protein [Prochlorococcus marinus] >gi|28380112|sp|Q9K4U6|PEBA PROMA 15,16-dihydrobilive' KLMLQDLHNNLKRRIISH-GGKPIEVENGMSERFSHKQDTVIKSWLWDVPGFRRWRVTRMDGDKLQVLNSVAYPAYTNDKPILGIDILWFGLKRKLVLDFQPLV---QEERYFCRYYKDLQILKNRFVDFNSQKTMKIYDSNKYFSPWVLLYNGSF-DDLQCSLAKILDEFLHAYWQVDNNNSR-EYIKIIPSKVEQLHINYDIYSAERDPAHGLFKSYFGQTWADQFVREFLFPHSHLTAD----------------------------------------- [236] 'gi|75703515|gb|ABA23191.1| Ferredoxin-dependent bilin reductase [Anabaena variabilis ATCC 29413] >gi|75909790|ref|YP 324086.1|' REQQHPLIRQLADCIEEVWDLSPYHLPAELGEGRLEGEKLTIENRCYQTPQFRKMHLELAKGNMLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAIADLSPVHLDRTLPAYNSALTNLDTLNFSQPRELPEWG--------NIFSDFCIFVRPSS-PEEEAMFLGRVREFLQVHCQGAIAASP--VSAEQKQHILAGQHNYCSKQQQNDKTRRVLEKAFGTDWAENYMTTVLFDLPE--------------------------------------------- [227] 'gi|13751780|gb|AAK38587.1| phycocyanobilin:ferredoxin oxidoreductase [Nostoc sp. PCC 7120] >gi|17132841|dbj|BAB75406.1| alr3707' REQQHPLIRQLADCIEEVWDLSPYHLPAELGEGRLEGEKLTIENRCYQTPQFRKMHLELAKGNMLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAIADLSPVHLDRTLPEYNSALTSLNTLNFSQPRELPEWG--------NIFSDFCIFVRPSS-PEEEAMFLGRVREFLQVHCQGAIAASP--VSAEQKQQILAGQHNYCSKQQQNDKTRRVLEKAFGVDWAENYMTTVLFDLPE--------------------------------------------- [227] 'gi|72001841|gb|AAZ57643.1| ferredoxin-dependent biliverdin reductase [Prochlorococcus marinus str. NATL2A] >gi|72381991|ref|YP' QSELNPLLLEAFELIKNRIDLEPLYIDPMLSYRKQNEEKLFIINEFYQAKGFRKIHLEVAKGKSLEILHCVFFPDPCYDLPIFGADLVVNSNNISAIVDLSPVG--KHLPDLISQMRSLKVSKFTEPGKLPEWG--------FIFSPYVAFIRPVD-FLEEKSFLELIDQYLSLLLSLLVKVKRDEINSLDAMCRLNYQKRYCLNQKRNDKTRGILTKFFGSSWADEYINKILFEC----------------------------------------------- [225] 'gi|22296035|dbj|BAC09860.1| phycocyanobilin:ferredoxin oxidoreductase [Thermosynechococcus elongatus BP-1] >gi|28380099|sp|P592' RQHQHPLIQRLADRIEAIWPLAPYALPEDLGEGKLEGERLTIENHCYQAPPFRKLHLELARGESLDILHCVMFPEPRYDLPMFGCDLVGGRGQISAIVDLSPVT--GQLPAYTCALNALPKLTFRQPRELPPWG--------HIFSPFCIFIRPQG-EAEEQQFLDRIGEYLTLHCQLSQQAVP----TDHPQAVIAGQRQYCQQQQQNDKTRRVLEKAFGVPWAERYMTTVLFDVPPV-------------------------------------------- [224] 'gi|33634779|emb|CAE20765.1| ferredoxin-dependent biliverdin reductase [Prochlorococcus marinus str. MIT 9313] >gi|33862863|ref|' GPAIHPLIESLAARIRQRRELSPFALDSVMESGQLDGEELLISNELHRCRGMRKLHLEIARGGGLQVLHCVFFPDPRFDLPIFGADIVAGPAGISAIVDLSPVG--LTMPELLHGLESLPIPAFQQVRELPEWG--------SIFSPFVQFIRPAS-SQEESWFVDLADGYLKALISSVIDATPDASDAASTIQRHKSQLSYCIQQKRNDKTRGVLEKAFNPQWADRYIEEILFEDPPPL------------------------------------------- [229] 'gi|53688531|ref|ZP 00110663.2| hypothetical protein Npun02002041 [Nostoc punctiforme PCC 73102]' REQQHPLIRQLADCIEAAWDLSPYHLPDELGEGRLEGEKLTIENRCYQTPQFRKMHLELANGNMLDILHCVMFPRPQYNLPMFGCDLVGGRGQISAIADLSPIQLERTLPEYTTALAQLPVLNFSQPRELPEWG--------NIFSDFCIFVRPGS-PEEEAMFLSRVREFLDIHCMQAIASHP--VSVEQVTQNLAGQHNYCTKQQQNDKTRRVLEKAFGPVWAENYMTTVLFDLPT--------------------------------------------- [227] 'gi|13751782|gb|AAK38588.1| phycocyanobilin:ferredoxin oxidoreductase [Nostoc punctiforme] >gi|28380103|sp|Q93TM9|PCYA NOSPU Phy' REQQHPLIRQLADCIEAAWDLSPYHLPDELGEGRLEGEKLTIENRCYQTPQFRKMHLELANGNMLDILHCVMFPRPQYNLPMFGCDLVGGRGQISAIADLSPIQLERTLPEYTTALAQLPVLNFSQPRELPEWG--------NIFSDFCIFVRPGS-PEEEAMFLSRVREFLDIHCMQAIASHP--VSVEQVTQNLAGQHNYCTKQQQNDKTRRVLEKAFGPVWAENYMTTVLFDLPT--------------------------------------------- [227] 'gi|31415693|gb|AAP45708.1| 3Z-phycocyanobilin:ferredoxin oxidoreductase [Expression vector pAT101] >gi|1208485|dbj|BAA10653.1|' MPTLNPMIQQLALAIAASWPLKPYQLPEDLGEGRLEGEKLVIENRCYQTPQFRKMHLELAKGKGLDILHCVMFPEPLYGLPLFGCDIVAGPGGVSAIADLSPTQSDRQLPAYQKSLAELGQPEFEQQRELPPWG--------EIFSEYCLFIRPSN-VTEEERFVQRVVDFLQIHCHQSIVAEP--LSEAQTLEHRQGQIHYCQQQQKNDKTRRVLEKAFGEAWAERYMSQVLFDVIQ--------------------------------------------- [227] 'gi|50304683|ref|XP 452297.1| unnamed protein product [Kluyveromyces lactis] >gi|49641430|emb|CAH01148.1| unnamed protein produc' PDDVDTVKERLAEDIKARISVDSVNPPYKVGQKRWDVEMATAEFKILQ-NDLIPLLDWEAKSAATSIFTNITVDDISINWPLL--DSNMTTSGKHLLLDVQAVISATSHSSYTHVVLKTIDTVESKRKRKVNAKDNDLDYESAFFK------QVTINGYLTEPTISTYIRYLQSYKELTSELRTHFTKNSEIKRALYQQPEFRKHRSLPSAQSKLVQRSIAHHPEKEYIMDSLFNETPKSPIFSDVDAETIIIGSASLPSLANEPIETQ-------------- [260] 'gi|50311727|ref|XP 455891.1| unnamed protein product [Kluyveromyces lactis] >gi|49645027|emb|CAG98599.1| unnamed protein produc' SFSCQNCRKTRRKCVYELPIKQSVDIGNDMIQQKLHRKQNSVRSSVIT-PQLHQRQLQRPNSSLPGISHFTPKNTSQFDLPLA--DSATSSAMSSSPLNIHPLL----SHHYQNQHHQQHQNHHNNNNNNNNNTDNLRYEQTHKVH-----------ENDPEFVHTSFAEYLRARFETASNALQPLSVEGIVDKIRNERSDSPSLLPPQDKMRTILSHFYTNVHGRQYYYDLLFSILKDVVNCADIDIYRPRTVGMARNLIELFNLGKL-------------- [251] 'gi|71673592|ref|ZP 00671340.1| Ferredoxin-dependent bilin reductase [Trichodesmium erythraeum IMS101] >gi|71672840|gb|EAO29502.' GIQQNPLVCQLANSIEAVWNLEPYYLPADLGEGRLEGEKLIIQNKCYQTAQFRKLHLELATGPKLDILHCVMFPRISYPLPIFGTDLVGARGQISAVVDISPQSQDRKLPEYNYQLQALPIKEFAHPRQLPQWG--------EIFSEFCLFIRPTG-LEEEQKFISIVESYLEIHCQQAIAQKP--VSPEQQLEILKAQHHYCTQQRQNDKTRRVLEKAFGPEWTDYYLTTVLFDSPN--------------------------------------------- [227] 'gi|71364204|ref|ZP 00654799.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5] >gi|71160584|gb|EAO10390.1| con' ---ISPFYEHAENELPADSDITMYKRTEKYVQQNTKRQAELLQRIKSLSPHLRMLRDASYTADVAKILNLVLEPQVEFSYPFLSADYIEREQVRVLSLNDTSIYKVNDALQARSQSIEALKQMQSRMQEMDEYKKLPDIRQAELDAPYTQLI-----KVNEEKLIAVINDRLRYFEDKSDKDQSQVSALSEPKQVSEPKNEYI------NSNKIRVD--YDRAWIERYLEAM--------------------------------------------------- [216] 'gi|78197206|gb|ABB34971.1| ferredoxin-dependent biliverdin reductase [Synechococcus sp. CC9605] >gi|78212747|ref|YP 381526.1| p' PPGQHPLVQALAASIRSAWGLEILPCDEDLRQGQLDGEGLSIGNELFRCIGLRKLHLEVARGNGLQILHSVWFPDPHYDLPIFGADIVAGPAGISAIVDLSPTS--DALPELIQRLEARPWPAFRQVRELPAWG-------SAIFSNKVCFIRPDG-ADEEAAFQQLVSHYLQVMATSVIEATPEQSTALTTVRRYEGQLNYCLQQKRNDKTRRVLEKAFDSAWADRYIDMLLFDNPPEL------------------------------------------- [230] gnl|CMER|CMH179C_similar_to_nucleoporin_155kD ---DDPLIDLVVDDIVSAYERTCSECDTELVASELQRRMVSTQARALSVPSTRWTNDTKAAASAPSLLRTATAPSAERRAPLFGGDLVTRPAEAELSIDLTPLVRATLRNGVLSPRRTRLLPIHERIALLIR---------ALHFAPYALWETLDTSRPTPETLQQRFTALAKVFYPSFSQAEL-ARAPETVNPTCTTDHDDDDDDNDDDDDDEIVTAWFSLNWLQPTLVEVLVALTPALVATLRVLRSRFTSRQSLTATASKAERARP-------------- [256] 'gnl|CMER|CMF046C similar to beta-tubulin folding cofactor D' AVPASRFMSRLVTRTSRLFRWLASEINRQLAARNEQDLQSMMPIIQVFLKQFGRLLTLQRGDVLAQVLKLFVSPDPLIRLPAVATDYLLRSLEHHALADLQQCV-----HTHLPRKRRLLVNKLQRSRSSVP-------DPCRYAAPLLVETQVCSDTEAWYALLETWTASLCFHITSFDRVDS-------VRALARERLAQLALAADETPAHCVLAILDGMLWAKSFVQSLLYSCALAVIPRADNMFHECCRTHETIHARCRALIHQL-------------- [250] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-3 16 19 28-29 48-49 84-85 105-109 133-142 144 147-283; END; BEGIN MacClade; Version 4.0 87; LastModified -1064332611; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '12' '698' '1' all; EditorPosition '46' '6' '969' '1623'; TreeWindowPosition '46' '6' '985' '1630'; ListWindow Characters closed Geneva '9' '50' '10' '273' '359' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '52' '30' '968' '1620'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '943' '43' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '50' 001011001; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '0' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END;