#NEXUS [MacClade 4.08 registered to Mineko IWATA, NIBB] BEGIN DATA; DIMENSIONS NTAX=195 NCHAR=1034; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|15238743|ref|NP 197904.1| KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription factor [Arabidopsis thaliana] >gi|4063731|gb|' MAFHHNHLSQDLSFNHFTDQ-----HQPPPPQPP-------------------------------------------------------------------------------------------------------------------PPPPQQQQHFQEAPPPNWL---NTALLRSSDNNNNFLNLHTATAN--TTTASSSD-------------------SPSSAAAAAAANQWLSRSSSFLQ------RNNNNN----ASIVGDGID----DVTGGADTM---------------IQGEMK---------TGGGE-------------------------------------NKNDGGGATAADGV------------VSWQNA---------RHKAEILSHPLYEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQHVVAKYSALGAAA-QG---------LVGDD-K--ELDQFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTG------------------------------------VSPGEGM-----------------------------------------------------------------------------GATMSDDEDE----------------QVESD--ANMF-DG---G---LD-VLGFGPLIPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTVL-KNKRKSNAGDNSGRERFA----------------------------------------------------- [431] 'gi|21554222|gb|AAM63298.1| KNAT3 homeodomain protein [Arabidopsis thaliana]' MAFHHNHLSQDLSFNHFTDQ-----HQPPPPQPP-------------------------------------------------------------------------------------------------------------------PPPPQQQQHFQEAPPPNWL---NTALLRSSDNNNNFLNLHTATAN--TTTASSSD-------------------SPSSAAAAAAANQWLSLSSSFLQ------RNNNNN----ASIVGDGID----DVTGGADTM---------------IQGEMK---------TGGGE-------------------------------------NKNDGGGATAADGV------------VSWQNA---------RHKAEILSHPLYEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQHVVAKYSALGAAA-QG---------LVGDD-K--ELDQFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTG------------------------------------VSPGEGM-----------------------------------------------------------------------------GATMSDDEDE----------------QVESD--ANMF-DG---G---LD-VLGFGPLIPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTVL-KNKRKSNAGDNSGRERFA----------------------------------------------------- [431] 'gi|79328660|ref|NP 001031938.1| KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) [Arabidopsis thaliana]' MAFHHNHLSQDLSFNHFTDQ-----HQPPPPQPP-------------------------------------------------------------------------------------------------------------------PPPPQQQQHFQEAPPPNWL---NTALLRSSDNNNNFLNLHTATAN--TTTASSSD-------------------SPSSAAAAAAANQWLSRSSSFLQ------RNNNNN----ASIVGDGID----DVTGGADTM---------------IQGEMK---------TGGGE-------------------------------------NKNDGGGATAADGV------------VSWQNA---------RHKAEILSHPLYEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQHVVAKYSALGAAA-QG---------LVGDD-K--ELDQFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTG------------------------------------VSPGEGM-----------------------------------------------------------------------------GATMSDDEDE----------------QVESD--ANMF-DG---G---LD-VLGFGPLIPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTVL-KNKRKR----------------------------------------------------------------- [419] 'gi|23197862|gb|AAN15458.1| KNAT3 homeodomain protein [Arabidopsis thaliana] >gi|21539535|gb|AAM53320.1| KNAT3 homeodomain prote' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M---------------IQGEMK---------TGGGE-------------------------------------NKNDGGGATAADGV------------VSWQNA---------RHKAEILSHPLYEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQHVVAKYSALGAAA-QG---------LVGDD-K--ELDQFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTG------------------------------------VSPGEGM-----------------------------------------------------------------------------GATMSDDEDE----------------QVESD--ANMF-DG---G---LD-VLGFGPLIPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTVL-KNKRKSNAGDNSGRERFA----------------------------------------------------- [306] 'gi|30683467|ref|NP 196667.2| KNAT4; transcription factor [Arabidopsis thaliana] >gi|26451634|dbj|BAC42914.1| putative homeobox' MAFHNNHFNHFT-------------DQQQHQPPP-------------------------------------------------------------------------------------------------------------------PPQQQQQQHFQESAPPNWLLRSDNNFLN-------------------------------------LHTAASAAATSSDSPSSAAANQWLSRSSSFLQ------RGNTAN-NNNNETSGDVIE----DVPGGEESM---------------I----------------------------------------------------------------GEKKEA------------ERWQNA---------RHKAEILSHPLYEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQNVVAKYSTLEAAQ---GL-------LAGDD-K--ELDHFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSFTG------------------------------------VSPGEGT-----------------------------------------------------------------------------GATMSEDEDE----------------QVESD--AHLF-DGSLDG-------LGFGPLVPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKSWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTVS-KNKRRSNAGENSGRDR------------------------------------------------------- [393] 'gi|1045044|emb|CAA63131.1| KNAT4 homeobox protein [Arabidopsis thaliana]' MAFHNNHFNHFT-------------DQQQHQPPP-------------------------------------------------------------------------------------------------------------------PPQQQQQQHFQESAPPNWLLRSDNNFLN-------------------------------------LHTAATAAATSSDSPSSAAANQWLSRSSSFLQ------RGNTAN-NNNNETSGDVIE----DVPGGEESM---------------I----------------------------------------------------------------GEKKEA------------ERWQNA---------RHKAEILSHPLYEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQNVVAKYSTLEAAQ---GL-------LAGDD-K--ELDHFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSFTG------------------------------------VSPGEGT-----------------------------------------------------------------------------GATMSEDEDE----------------QVESD--AHLF-DGSLDG-------LGFGPLVPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKSWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTVS-KNKRRSNAGENSGRDR------------------------------------------------------- [393] 'gi|9795158|emb|CAC03454.1| HOMEOBOX PROTEIN KNOTTED-1 LIKE 4 (KNAT4) [Arabidopsis thaliana]' MAFHNNHFNHFT-------------DQQQHQPPP-------------------------------------------------------------------------------------------------------------------PPQQQQQQHFQESAPPNWLLRSDNNFLN-------------------------------------LHTAASAAATSSDSPSSAAANQWLSRSSSFLQ------RGNTAN-NNNNETSGDVIE----DVPGGEESM---------------I----------------------------------------------------------------GEKKEA------------ERWQNA---------RHKAEILSHPLYEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQNVVAKYSTLEAAQ---GL-------LAGDD-K--ELDHFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSFTG------------------------------------VSPGEGT-----------------------------------------------------------------------------GATMSEDEDE----------------QVESD--AHLF-DGSLDG-------LGFGPLVPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKSWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTVS-KNKRRRYMESLNLEGFLYEAMQVKTAEETVEIKLACRDPKAL----------------------------- [419] 'gi|1946222|emb|CAA96512.1| knotted1-like homeobox protein [Malus x domestica] >gi|3023961|sp|O04136|KNAP3 MALDO Homeobox protei' MAY-HNHLSQDLPLHHFTDQTHHQHQQYQSDQPD-------------------------------------------------------------------------------------------------------------------PNSKPPEPHHSFQPAPNWL---NSALLR------NFTNTDTNPTN--SNNANNNGGGV--------SNFLNLHVTASDSAASQASNQWLSQSHRPIL------HRNHSD----VN------D----DVTVAGDSM---------------IAAALS---------HDSAD-----L--KPDSI-----------------------LNKNEGGGGDG--GV------------MNWQNA---------RHKAEILAHPLYEPLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQNVVAKYSALGNGM-VG------------DD-K--ELDQFMRNYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTG------------------------------------VSPGEGT-----------------------------------------------------------------------------SATMSDDEDD----------------QVDSD--ANLF-DEGMEG---HD-SMGFGPLIPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------TSTVL-KSKRKR----------------------------------------------------------------- [427] 'gi|1805618|dbj|BAA08553.1| OSH45 [Oryza sativa (japonica cultivar-group)]' MAF-HGHLPHEMTM-----------QALGADDAA-------------------------------------------------------------------------------------------------------------------VAAAAAAGGVGAGGAPAWMRYNDGSFLH------LQTTSDSSASP--SGAA--------------------AAAAAAAAAAAAGVQQWMGGGG-------------------------------------GGEDA---------------VAAAM--------------------------------------------------------GGGGEA-------------------DAA---------RCKAEILAHPLYEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQGVVAKYSALAAAA-AG-----------DDG-R--ELDQFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------NLQSLTG------------------------------------ASPGEGT-----------------------------------------------------------------------------GATMSDGEDD----------------QADSE--ANMY-DPSLDG---AD-NMGFG--LPTESERSLMERVRQELKHELK-----------QGYKEKLIDIREEILRKRRA--GKLPGDTTSTLKAWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTSV-KTKRKS--NA------------------------------GDNNS-------------------------- [374] 'gi|3116212|dbj|BAA25921.1| homeobox gene [Nicotiana tabacum]' MAYNPNHMSQEMDMHHFSDENSAVLRSILPEQLA-------------------------------------------------------------------------------------------------------------------QSSPDVKP-LDHQQPPTWL---NSAILR-------------QESH--YTGTGGRGVGE--------NFLNLHSNSESSAAASQASNQWLSRSI----------------------LRRNVSD----VQTSNNSSA---------------VIAAADLKNDDGNNNNDNGN-----N--NAGGQ-----------------------LTDSEVVGGGGTDGI------------LNWQNA---------GYKAEILAHPLFEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQQVVAKYSTLGQNI--------------GDD-K--ELDQFLTHYVLLLCPFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTG------------------------------------VSPGEGT-----------------------------------------------------------------------------GATMSDDEDD----------------QVDSE--ANLF-DGSLDG---HD-GMAFG--LPTESERSLMERVRQELKHDLK-----------QGYKEKLVDIREEILRKRRA--GKLPGDTTSVLKAWWQSHA-KWPYPT------------------EEDKAKLVQETGLQLKQINNWFINQRKRDWH-------SN--AS-------------------------------------------------------SSTTS-KSKRKR----------------------------------------------------------------- [422] 'gi|4098244|gb|AAD09582.1| homeobox 1 protein [Lycopersicon esculentum]' --------------------------------------------------------------------------------------------------------------------------------------------------------------DARKSPPTWL---NTSLLR---------QQHSQFGN--SSSPS----------------------SAAAAAAVAGGNNFLHLQTSNSD------SSNSNQWLSPTAAAGGGGN----GGGGGHNDE---------------LSESMNFAKKMSQQHSGGGE-----E--NN---------------------------NNNNNNNNNNNEEE------------NSWERE---------KCKADILNHPLYDQLLSAHVSCLR--IATPV-D--------QLPRIDAQL--AQSQNVVAKYSVLGQGQ-PP-----------LDD-K--DLDQFMTHYVLLLSSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------SLQSLTG------------------------------------VAPGEGT-----------------------------------------------------------------------------GATMSDDDDD----------------QADSD--TNFL-DGGFDG---PD-SMGFGPLVPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLARETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------TSSSQ-KSKRKSAGEIKQ----------------------------------------------------------- [392] 'gi|6016226|sp|O22300|LET12 LYCES Homeobox protein knotted-1-like LET12 >gi|2529703|gb|AAC49918.1| class II knotted-like homeodo' MEF-QDHFSQEMVLHQQQQQQQQQQNAVLR-----------------------------------------------------------------------------------------------------------------------SMLPESPHHDARKSPPTWL---NTSLLR---------QQHSQFGN--ASSPS----------------------SAAAAAAVAGGNNFLHLQTSNSD------SSNSNQWLSPTAAAGGGSN----GGGSGHNDE---------------LSESMNFAKKMSQQHSGGGE-----E--NN---------------------------NNNNNNNNNNNEEE------------NSWERE---------KCKADILNHPLYDQLLSAHVSCLR--IATPV-D--------QLPRIDAQL--AQSQNVVAKYSVLGQGQ-PP-----------LDD-K--DLDQFMTHYVLLLSSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------SLQSLTG------------------------------------VAPGEGT-----------------------------------------------------------------------------GATMSDDDDD----------------QADSD--TNFL-DGGFDG---PD-SMGFGPLVPTESERSLMERVRQELKHELK-----------QGYKEKIVDIREEILRKRRA--GKLPGDTTSVLKAWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------TSSSQ-KSQTQECR--------------------------------------------------------------- [426] 'gi|1805617|dbj|BAA08552.1| OSH45 [Oryza sativa (japonica cultivar-group)]' MAF-HGHLPHEMTM-----------QALGADDAA-------------------------------------------------------------------------------------------------------------------VAAAAAAGGVGAGGAPAWMRYNDGSFLH------LQTTSDSSASP--SGAA--------------------AAAAAAAAAAAAGVQQWMGGGG-------------------------------------GGEDA---------------VAAAM--------------------------------------------------------GGGGEA-------------------DAA---------RCKAEILAHPLYEQLLSAHVACLR--IATPV-D--------QLPRIDAQL--AQSQGVVAKYSALAAAA-AG-----------DDG-R--ELDQFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------NLQSLTG------------------------------------ASPGEGT-----------------------------------------------------------------------------GATMSDGEDD----------------QADSE--ANMY-DPSLDG---AD-NMGFG--LPTESERSLMERVRQELKHELK-----------QGYKEKLIDIREEILRKRRA--GKLPGDTTSTLKAWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTSV-KTKRKR--AG------------------------------GIHPKQ------------------------- [375] 'gi|11463943|dbj|BAB18585.1| CRKNOX3 [Ceratopteris richardii]' M-------------------------------------------------------------------------------------------------------------------------------------------------------EDKSYVESKLGAPTWL----------------------------SGAVQQQQVRASQQGTTNSAGSSFVNEATQQQQSHDTPRKWCGCEAGGQCVQCSFMHLSGGGAGGGGSSVAGNGIAMTANHNQQHSAAEAAGLLAIARSGGDLAQSGQGGRGNLLDLHSDTAN-----SSDLVEGE---------------------HGGGEHGGGGHNQQDSQ------------VLWQNA---------RLKADITMHPLYDQLLAAHVACLR--IATPV-D--------QLPRIDAQI--AQASQIVAKYAVLGQNN---LL-------VGEEK-D--ELDQFMAHYVLLLCTFKEQLQQH----VKVHAMEAVMACWELEQ--------------------------------------------SLLTLTG------------------------------------VSPGEGT-----------------------------------------------------------------------------GATMSDDDDD----------------PAESD--PSIY-DPAFDT---HD-SGAFGPLIPTETERTLMERVRQELKNELK-----------NGYKDRIVDVREEILRKRRA--GKLPGDTTSVLKAWWHAHS-KWPYPT------------------EDEKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------STAAM-KTKRKR----------------------------------------------------------------- [436] 'gi|15236649|ref|NP 194932.1| KNAT5 (ARABIDOPSIS THALIANA HOMEOBOX 1 GENE); transcription factor [Arabidopsis thaliana] >gi|1722' MSFNSSHL----------------------LPPQ-------------------------------------------------------------------------------------------------------------------EDLPLRHFTDQSQQPPPQRHFSETPSLVTASFLNLPTTLTTADSD--LAPPH----------------------RNGDNSVADTNPRWLSFHSEM---------------QNTGEVRSEVID----GVNADGETI---------------L-----------------------------------------------------------------GVVGG------------EDWRSA---------SYKAAILRHPMYEQLLAAHVACLR--VATPV-D--------QIPRIDAQL--SQLHTVAAKYSTLGVVV---------------DN-K--ELDHFMSHYVVLLCSFKEQLQHH----VCVHAMEAITACWEIEQ--------------------------------------------SLQSLTG------------------------------------VSPSESN-----------------------------------------------------------------------------GKTMSDDEDDN---------------QVESE--VNMF-DGSLDG---SDCLMGFGPLVPTERERSLMERVKKELKHELK-----------QGFKEKIVDIREEIMRKRRA--GKLPGDTTSVLKEWWRTHS-KWPYPT------------------EEDKAKLVQETGLQLKQINNWFINQRKRNWN-------SN--SS-------------------------------------------------------TSSTLTKNKRKRTGKS------------------------------------------------------------- [383] 'gi|51535639|dbj|BAD37613.1| KNOX family class 2 homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|51535417|dbj|B' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHY--QDHA--------------------LAMDAAAAAAETGGHHHPGFVG-------------------------------------AG--------------------GVV--------------------------------------------------------GGGGGG-------------------GWE---------REKAAIAAHPLYERLLEAHVACLR--VATPV-D--------QLPRIDAQI--AARPPPLAAATAAAAAA-AAGG-------APSGG-E--ELDLFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------TLQSLTG------------------------------------ASPREGS-----------------------------------------------------------------------------GATMSDDEDN----------------QVDSE--SNMF-DGN-DG---SD-GMGFGPLMLTEGERSLVERVRQELKHELK-----------QGYREKLVDIREEILRKRRA--GKLPGDTASTLKAWWQAHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PA-------------------------------------------------------SSSSD-KSKRKRYRVV------------------------------DF----------------------------- [317] 'gi|33333542|gb|AAQ11887.1| knotted 7 [Hordeum vulgare]' MAYQYHHHQDH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGMDAAAAAAAGG--------------------------------------------------------------------------------------------------------------------------NPGGGGFAPGLSAG------------GAWE-----------GEKAAVEAHPLYERLLEAHVACLR--VATPV-D--------QLPRIDAQI--AARAPPPMPPASAL-----------------SGG-E--ELDLFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------TLQSLTG------------------------------------ASPGEGT-----------------------------------------------------------------------------GATMSDDEDN----------------PVDSE--SNMF-DGN-DV---SD-GMGFG--MLTEGERSLVERVRQELKHELK-----------QGYREKLVDIREEILRKRRA--GKLPGDTASTLKAWWQAHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PT-------------------------------------------------------SSSSD-KSKRKRYNSRLKTPFS?AR??SLSLSLSPGWISFPLHSQKQNKKEQCR----------------------- [340] lcl|Smo_At5g25220_1_1_unnamed_protein_product M-------------------IKAGIAVIPRCYCC-------------------------------------------------------------------------------------------------------------------ANHKAGGGGGLAPSGPTWL---SNAVMP-----------------------------------------RQPSPSPVAAAGAPNYSQWLAMPQPQVT----------------------STD----LGEQSHDAA---------------AAAAAAAKGFLEHLHGDTAN-----SGGGVGGD-----------------------MVAEEQGGGGGGMDS------------KLWQSA---------RLKADLVTHPLYEQLLSAHISCLR--TATPV-D--------QLPKIDAQL--AHSSQVAAKYSILATNE---QG-------LSKDK-D--EVNEFMAHYVTLLRSFKDQLQQH----VRVHAMEAVVACWELEQQREEEEEEEEEEEEEASITQSHDLKAPPFSSKRENSRRVPAFSTAFSSVPG------------------------------------VSPGEGT-----------------------------------------------------------------------------GATMSEDEDDQ---------------QADSD--SGYY-DAGMDG---HD-FTGFGPLIPTETERTLMERVRHELKIELK-----------QGYKAKINDVREEILRKRRA--GKLPGDTTSVLKTWWHAHS-KWPYPS------------------EDDKARLVQETGLELKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTSL-KNKRKR----------------------------------------------------------------- [439] lcl|Smo_At5g25220_6_1_unnamed_protein_product MGSSSQSGDEA------------------------------------------------------------------------------------------------------------------------------------------AAADSSKQQQQQMGMPTWL---NSALSR-------------------------QTSSQ--------QQAQDQQQQAWPNPSSSSYTNWLSAAGATSTGVRRLEQQQASATTNTSPATATTTTTTELLVEQDRKAA---------------VAAAAMLMGAVEA----DVT-----SHGSVPGD-----------------------PDLDE------CAAA------------RYQMNA---------GLKADIVTHPLYEQLLEAHVACLR--IATPV-D--------QLSRIDGQI--SQCHHAIAKYSILANHQ---LL-------CGSSK-E--ELDHFMAHYVMLLKSFKDQLQHH----VRVHAKEAVMACWELEQ--------------------------------------------SLISLTG------------------------------------AAPGEGT-----------------------------------------------------------------------------GATMSDDEDEQQQP------QQEQQQQQQSD--SDYW----------QD-NLGFGPLIPTETERTLMERVRQELKHELK-----------QGYRARIVDVREEILRKRRA--GKLPGDTTSVLKAWWHAHS-KWPYPT-------------VEMWQEDEKARLVQETGLELKQINNWFINQRKRNWH-------HH--PS-------------------------------------------------------SSTNS-STKAKCKR--------------------------------------------------------------- [425] 'gi|8493589|gb|AAF75812.1| Strong similarity to Homeobox Protein HD1 from Brassica napus gi|1170191, and contains a lactate/mala' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGA-----------------------TV-----GGDGDTAV------------VAEQNR---------QLKGEIATHPMYEQLLAAHVACLR--VATPI-D--------QLPIIEAQL--SQSHHLLRSYASTAVGY-------------HHDR-H--ELDNFLAQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTG------------------------------------ATLGEGS-----------------------------------------------------------------------------GATMSEDEDDLP-------------MDFSSD--NSGV-DFS-GG---HD-MTGFGPLLPTESERSLMERVRQELKLELK-----------QGFKSRIEDVREEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN--SH-------------------------------------------------------SLTSL-KSKRKH----------------------------------------------------------------- [283] 'gi|26451690|dbj|BAC42940.1| putative homeodomain transcription factor KNAT6 [Arabidopsis thaliana]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMGA-----------------------TV-----GGDGDTAV------------VAEQNR---------QLKGEIATHPMYEQLLAAHVACLR--VATPI-D--------QLPIIEAQL--SQSHHLLRSYASTAVGY-------------HHDR-H--ELDNFLAQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTG------------------------------------ATLGEGS-----------------------------------------------------------------------------GATMSEDEDDLP-------------MDFSSD--NSGV-DFS-GG---HD-MTGFGPLLPTESERSLMERVRQELKLELK-----------QGFKSRIEDVREEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN--SH-------------------------------------------------------SLTSL-KSKRKH----------------------------------------------------------------- [284] 'gi|18407708|ref|NP 564805.1| KNAT7; DNA binding / transcription factor [Arabidopsis thaliana] >gi|11878230|gb|AAG40858.1| homeo' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEAA-----L--GMMGA-----------------------TV-----GGDGDTAV------------VAEQNR---------QLKGEIATHPMYEQLLAAHVACLR--VATPI-D--------QLPIIEAQL--SQSHHLLRSYASTAVGY-------------HHDR-H--ELDNFLAQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTG------------------------------------ATLGEGS-----------------------------------------------------------------------------GATMSEDEDDLP-------------MDFSSD--NSGV-DFS-GG---HD-MTGFGPLLPTESERSLMERVRQELKLELK-----------QGFKSRIEDVREEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN--SH-------------------------------------------------------SLTSL-KSKRKH----------------------------------------------------------------- [291] 'gi|21618231|gb|AAM67281.1| homeodomain-containing protein HD1, putative [Arabidopsis thaliana]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGA-----------------------SV-----GGDGDAAV------------VAEQNR---------QLKGEIATHPMYEQLLAAHVACLR--VATPI-D--------QLPIIEAQL--SQSHHLLRSYASTAVGY-------------HHDR-H--ELDNFLAQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTG------------------------------------ATLGEGS-----------------------------------------------------------------------------GATMSEDEDDLP-------------MDFSSD--NSGV-DFS-GG---HD-MTGFGPLLPTESEKSLMERVRQELKLELK-----------QGFKSRIEDVREEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN--SH-------------------------------------------------------SLTSL-KSKRKH----------------------------------------------------------------- [283] 'gi|453949|emb|CAA82314.1| homeodomain-containing protein [Brassica napus] >gi|1170191|sp|P46606|HD1 BRANA Homeobox protein HD1' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEAA-----L--GMIGA-----------------------TVG---GGGDGDAAV------------VAEQNR---------QMKGEIATHPMYDQLLAAHVACLR--VATPI-D--------QLPIIEAQL--SHSHHLLRSYASTAVGF------------SHHDR-Q--ELDNFLAQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTG------------------------------------ATLGEGS-----------------------------------------------------------------------------GATMSEDEDDLQ-------------MDFSSD--NSGV-DFS-GG---HD-MTGFGPLLPTESERSLMERVRQELKLELK-----------QGFKSRIEDVREEIMRKRRA--GKLPGDTTTVLKNWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN--SH-------------------------------------------------------SLTSL-KSKRKH----------------------------------------------------------------- [294] 'gi|14348597|gb|AAK61309.1| class 2 KNOTTED1-like protein MKN1-3 [Physcomitrella patens]' MMAFNNLSHDVSLQQFPELWESSRFSQRHDTLDADQHTQGFDDTQFPKEPLEPNTNLHQVAMEIQPNATIIGDESSRGRNPVVNESDDRED----------------------------------------------------------DNHLLGTEDGIVKNGRTWL---NSALLREQNQASEDRSGYGDHNA--AERWCPVCSASGSQSCMCGMPMHAGDSSTISFPNQSTYTHWLSMQGANMLASQ--------------------------HRTGGEVDA---------------KAAGFTVSPQSTKMATELNL-----SPAGHGRDNHALFTDPRHSVAQGGSRYAEDYERTEHQTDWEGATQK------------MEWEQA---------RDKFLIVAHPLYPDLLNAHASCLR--VGTPV-D--------QLPHIEAQL--TQARHVTSKYSVLHPDH--LEI-------TEDEK-T--ELDQFMAQYIMLLCSFKDHLQQH----VYYDVTEAMMSCWELEQ--------------------------------------------ALHNLTG------------------------------------VSAGEST-----------------------------------------------------------------------------GATMSEEDED-----------------YDSD--YGAY-DAHMDP---QD-SGGFGPLVPTESERTLMERVRQELKYELK-----------QGYRARIVDVREEILRKRRA--GKLPEGTTTVLKAWWQAHS-KWPYPT------------------EDEKERRIQETGLELKQVNNWFINQRKRNWH-------SN--PL-------------------------------------------------------SSSSELKSKRKK----------------------------------------------------------------- [533] 'gi|14149141|dbj|BAB55660.1| KNOX family class 2 homeodomain protein [Oryza sativa (japonica cultivar-group)]' MQGGDHGGMEMGVGSFTGGGGGGECSSSSATAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAEAEERQLLKGEIAVHPLCEQLVAAHVGCLR--VATPI-D--------HLPLIDAQL--AQSSGLLHSYAAHHRPF------------LSPHDKQ--ELDSFLAQYMMLLCSFREQLQQH----VRVHAVEAVMACREIEQ--------------------------------------------SLQDLTG------------------------------------ATLEEGT-----------------------------------------------------------------------------GATMSEDEDE----------------TAPML--EGPM-DMGSDG---HD-LMGFGPLMPTDSERSLMERVRQELKIELK-----------QGFKSRIEDVREEILRKRRA--GKLPGDTTTILKQWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN--SQ-------------------------------------------------------TSTL--KSKRKR----------------------------------------------------------------- [314] 'gi|4098246|gb|AAD00253.1| homeobox 2 protein [Lycopersicon esculentum]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQEEGG-----L--GLMGS-----------------------SNTSGLGGGDISSMM------------ISSEDHHNRNLNHYNQLKSEIATHPLYEQLLSAHVACLR--VRTPI-D--------QLPLIDAQL--TQSHNLLRSYASSQQQQQQHSL-------SHHER-Q--ELDNFLAQYLLVLCSFKEQLQQH----VRVHAVEAVMACREIEQ--------------------------------------------NLQLLTG------------------------------------ATLGEGT-----------------------------------------------------------------------------GATMSDDEDELQ-------------MDFSLD--VSG----G-DA---HD-LMGMGFGLPTESERSLMERVRQELKIELK-----------QGFRSRIEDVREEILRKRRA--GKLPGDTTTVLKNWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------SN--SQ-------------------------------------------------------SVTSL-KSKRKR----------------------------------------------------------------- [310] lcl|Ppa_At5g25220_2_1_unnamed_protein_product -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPMHAGDSSTISFPNQSTYTHWLSMQGANMLASQ--------------------------HRTGGEVDA---------------KAAGFTVSPQSTKMATELNL-----SPAGHGRDNHALFTDPRHSVAQGGSRYAEDYERTEHQTDWEGATQK------------MEWEQA---------RDKFLIVAHPLYPDLLNAHASCLR--VGTPV-D--------QLPHIEAQL--TQARHVTSKYSVLHPDH--LEI-------TEDEK-T--ELDQFMAQYIMLLCSFKDHLQQH----VYYDVTEAMMSCWELEQ--------------------------------------------ALHNLTG------------------------------------VSAGEST-----------------------------------------------------------------------------GATMSEEDED-----------------YDSD--YGAY-DAHMDP---QD-SGGFGPLVPTESERTLMERVRQELKYELKQAYFVVMHYHYQGYRARIVDVREEILRKRRA--GKLPEGTTTVLKAWWQAHS-KWPYPT------------------EDEKERLIQETGLELKQVNNWFINQRKRNWH-------SN--PL-------------------------------------------------------SSSSELKSKRKK----------------------------------------------------------------- [392] 'gi|14149137|dbj|BAB55658.1| KNOX family class 2 homeodomain protein [Oryza sativa (japonica cultivar-group)]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E--ELDLFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMGCWELEQ--------------------------------------------SLQSLTG------------------------------------ASPGEGT-----------------------------------------------------------------------------GATMSDDEDN----------------QVDSE--ANMF-DGN-DG---SD-GMGFGPLMLTEGERSLVERVRHELKNELK-----------QGYKEKLVDIREEILRKRRA--GKLPGDTASILKAWWQAHS-KWPYPT------------------EDDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PA-------------------------------------------------------SSGE--KTKKKRNVTGDGGAEQSW----------------------------------------------------- [212] 'gi|85361945|emb|CAJ58046.1| KNOX family class 2 homeodomain protein [Zea mays]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGPSGGE--ELDLFMTHYVLLLCSFKEQLQQH----VRVHAMEAVMGCWELEQ--------------------------------------------SLQSLTG------------------------------------ASPGEGT-----------------------------------------------------------------------------GGTMSDDEDN----------------QVDSE--ANMF-DGN-DG---SD-GMGFGPLILTEGERSLVERVRKELKNELK-----------QGYKEKLVDIREEIMRKRRA--GKLPGDTASVLKAWWQAHS-KWPYPT------------------EDDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PT-------------------------------------------------------SSAE--KTKKKR----------------------------------------------------------------- [206] 'gi|50943641|ref|XP 481348.1| OSH45 [Oryza sativa (japonica cultivar-group)] >gi|28564620|dbj|BAC57787.1| OSH45 [Oryza sativa (j' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAVMACWELEQ--------------------------------------------NLQSLTG------------------------------------ASPGEGT-----------------------------------------------------------------------------GATMSDGEDD----------------QADSE--ANMY-DPSLDG---AD-NMGFG--LPTESERSLMERVRQELKHELK-----------QGYKEKLIDIREEILRKRRA--GKLPGDTTSTLKAWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTSV-KTKRKRYQIN------------------------------LCTSVI------------------------- [181] 'gi|1805619|dbj|BAA08554.1| OSH45 [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAVMACWELEQ--------------------------------------------NLQSLTG------------------------------------ASPGEGT-----------------------------------------------------------------------------GATMSDGEDD----------------QADSE--ANMY-DPSLDG---AD-NMGFG--LPTESERSLMERVRQELKHELK-----------QGYKEKLIDIREEILRKRRA--GKLPGDTTSTLKAWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PS-------------------------------------------------------SSTSV-KTKRKR----------------------------------------------------------------- [171] 'gi|14090233|dbj|BAA77821.2| homeobox gene [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAVMGCWELEQ--------------------------------------------SLQSLTG------------------------------------ASPGEGT-----------------------------------------------------------------------------GATMSDDEDN----------------QVDSE--ANMF-DGN-DG---SD-GMGFGPLMLTEGERSLVERVRHELKNELK-----------QGYKEKLVDIREEILRKRRA--GKLPGDTASILKAWWQAHS-KWPYPT------------------EDDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PA-------------------------------------------------------SSGE--KTKKKRNVTGDGGAEQSW----------------------------------------------------- [183] 'gi|14090235|dbj|BAA77822.2| homeobox gene [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAVMACWELEQ--------------------------------------------TLQSLTG------------------------------------ASPREGS-----------------------------------------------------------------------------GATMSDDEDN----------------QVDSE--SNMF-DGN-DG---SD-GMGFGPLMLTEGERSLVERVRQELKHELK-----------QGYREKLVDIREEILRKRRA--GKLPGDTASTLKAWWQAHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PA-------------------------------------------------------SSSSD-KSKRKRYRVV------------------------------DF----------------------------- [178] 'gi|4887620|dbj|BAA77823.1| homeobox gene [Oryza sativa (japonica cultivar-group)]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQAQYMMLLCSFREQLQQH----VRVHAVEAVMACREIEQ--------------------------------------------SLQDLTG------------------------------------ATLEEGT-----------------------------------------------------------------------------GATMSEDEDE----------------TAPML--EGPM-DMGSDG---HD-LMGFGPLMPTDSERSLMERVRQELKIELK-----------QGFKSRIEDVREEILRKRRA--GKLPGDTTTILKQWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN--SQ-------------------------------------------------------TSTL--KSKRKR----------------------------------------------------------------- [196] 'gi|85361943|emb|CAJ58045.1| KNOX family class 2 homeodomain protein [Zea mays]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAVMGCWELEQ--------------------------------------------SLQSLTG------------------------------------ASPGEGT-----------------------------------------------------------------------------GGTMSDDEDN----------------QVDSE--ANMF-DGN-DG---SD-GMGFGPLILTEGERSLVERVRKELKNELK-----------QGYKEKLVDIREEIMRKRRA--GKLPGDTASVLKAWWQAHS-KWPYPT------------------EDDKARLVQETGLQLKQINNWFINQRKRNWH-------SN--PT-------------------------------------------------------SSAE--KTKKKR----------------------------------------------------------------- [171] 'gi|50916376|ref|XP 468590.1| Putative homeobox gene [Oryza sativa (japonica cultivar-group)] >gi|25446694|gb|AAN74841.1| Putati' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSEDEDE----------------TAPML--EGPM-DMGSDG---HD-LMGFGPLMPTDSERSLMERVRQELKIELK-----------QGFKSRIEDVREEILRKRRA--GKLPGDTTTILKQWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN--SQ-------------------------------------------------------TSTL--KSKRKR----------------------------------------------------------------- [143] 'gi|33333540|gb|AAQ11886.1| knotted 6 [Hordeum vulgare]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P-----------------------------------------------------------------------------SATMSEDEDEGP--------------LMIME--AAPL-DMSSNG---HD-MMGFGPLVPTDTERSLMERVRQELKIELK-----------QGFKSRIGDVREEILRKRRA--GKLPGDTTTILKQWWQEHA-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN--SQ-------------------------------------------------------TSTL--KSKRKR----------------------------------------------------------------- [149] 'gi|1045046|emb|CAA63132.1| KNAT5 homeobox protein [Arabidopsis thaliana]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KELKHELK-----------QGFKEKIVDIREEIMRKRRA--GKLPGDTTSVLKEWWRTHS-KWPYPT------------------EEDKAKLVQETGLQLKQINNWFINQRKRNWN-------SN--SS-------------------------------------------------------TSSTLTKNKRKRTGKS------------------------------------------------------------- [104] 'gi|6016216|sp|P56660|KNOX2 MAIZE Homeobox protein knotted-1-like 2' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRQELKHELK-----------QGYRDKLVDIREEILRKRRA--GKLPGDTASTLKAWWQAHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWH-------NN---------------------------------------------------------------------------------------------------------------------------------------- [88] 'gi|913145|gb|AAB33491.1| KNOX7=class 1 knotted1-like homeobox gene knox7 product {homeodomain} [maize, Peptide Partial, 85 aa]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELKNELK-----------QGYKEKLVDIREEIMRKRRA--GKLPGDTASVLKAWWQAHS-KWPYPT------------------EDDKARLVQETGLQLKQINNWFINQRKRNWH-------SN---------------------------------------------------------------------------------------------------------------------------------------- [85] 'gi|6016214|sp|P56659|KNOX1 MAIZE Homeobox protein knotted-1-like 1' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRQELKLELK-----------QGFKSRIEDVREEILRKRRA--GKLPGDTTSILKQWWQEHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWH-------NN---------------------------------------------------------------------------------------------------------------------------------------- [88] 'gi|55416167|gb|AAV50045.1| homeobox protein [Saccharum hybrid cultivar]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR-----VGGAASEASTAGVG---AGGPS------------PSDLTE---------LMKAQIASHPRYPSLLSAYIECRK--VGAPP-Q--------VASLLEEVS--RERSPGA---AGAGE---------------IGVD-P--ELDEFMDSYCRVLVRYKEELSRP----FD----EAASFLSSIQA--------------------------------------------QLSNLCS------------------------------------AGSSP-AATAT------------------------------------------------------------------HSDDM--MGS-S-E----DEQ---CS-G---DTDV-PD-----IG-QEHSSRL-AD----------------------HELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARTVLLEWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQKKKHWK-------PS--ED-------------------------------------------------------MRFALME-GVA-GG--SSGTTSTSIQAQLDPESHTIWDDNWPIQSVVRPGM-------------------------- [315] 'gi|50900828|ref|XP 462847.1| putative knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|21104563|dbj|' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR-----VGGAASEASGVGVVVGGGGGSS------------SSDLTE---------LMKAQIAGHPRYPTLLSAYIECRK--VGAPP-E--------VASLLKEIG--RERRAGG-GGGGAGQ---------------IGVD-P--ELDEFMEAYCRVLVRYKEELSRP----FD----EAASFLSSIQT--------------------------------------------QLSNLCS------------------------------------GATSPPATTAT------------------------------------------------------------------HSDEM--VGS-S-D----EDQ---CS-G---ETDM-LD-----IG-QEQSSRL-AD----------------------HELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALLEWWNTHY-RWPYPT------------------EEDKLRLAARTGLDPKQINNWFINQRKRHWK-------PS--DG-------------------------------------------------------MRFALME-GVA-GG--SSGTT--------------LYFDTGTIGP-------------------------------- [301] 'gi|51854371|gb|AAU10751.1| KNOX class homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|2935573|gb|AAC32817.1| K' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISRGGGGGGGGAASEASGVA-----GGGSSPPHPPPPATTAAAADLTE---------LMKAQIAGHPSYPSLLSAYIECRK--VGAPP-E--------VTTLLEEIG--REGRGGGGGATAGGE---------------IGLD-P--ELDEFMETYCRVLERYKEELTRP----FD----EAASFLTGIHT--------------------------------------------QLASLCG------------------------------------GAPPP----TD------------------------------------------------------------------NSDEM--VGS-S-E----DEP---CS-G---DADA-AD-----FG-QEHSSRL-AD----------------------HELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MRFALME-GVT-GGS-SSGTT--------------LYFDTGTIGP-------------------------------- [311] 'gi|5103725|dbj|BAA79224.1| knotted1-type homeobox protein OSH6 [Oryza sativa]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR-----VGGAASEASGVGVVVGGGGGSS------------SSDLTE---------LMKAQIAGHPRYPTLLSAYIECRK--VGAPP-E--------VASLLKEIG--RERRAGG-GGGGAGQ---------------IGVD-P--ELDEFMEAYCRVLVRYKEELSRP----FD----EAASFLSSIQT--------------------------------------------QLSNLCS------------------------------------GATSPPATTAT------------------------------------------------------------------HSDEM--VGS-S-D----EDQ---CS-G---ETDM-LD-----IG-QEQSSRL-AD----------------------HELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALLEWWNTHY-RWPYPT------------------EEDKLRLAARTGLDPKQINNWFINQRKRHWK-------PS--DG-------------------------------------------------------MRFAFME-GVA-GG--SSGTT--------------LYFDTGTIGP-------------------------------- [301] 'gi|30348863|gb|AAP31409.1| knotted1-like homeodomain protein liguleless4a [Zea mays]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR-----AGGAATAASEVSGVA--GGPGSPPPPPSQPPPPPPADLTE---------LVKAQIAGHPRYPSLLSAYIECRK--VGAPP-E--------VATLLEEIG--RERCAAA---SAGGE---------------VGLD-P--ELDEFMEAYCRVLERYKEELSRP----FD----EAASFLSSVRT--------------------------------------------QLSSLCG-------------------------------------------AAAS------------------------------------------------------------------LSDEM--VGS-SEE----DEA---CSGG---DTEA-TE-----PGQQEHSSRL-AD----------------------RELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAATGLDPKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MRFALME-GVT-GGGPSSGTT--------------LYFDTGTIGP-------------------------------- [307] 'gi|22074785|gb|AAM47027.1| shootmeristemless-like [Petunia x hybrida]' -------------------------------------------------------MEGGGN----------------------------------------------------------------------------------------------SSGNNTSS--LMAY-GDHEN-------------NNNAIC--PPMMMMMMPPPPLSITNTSNNGESS------------------------------------SNNNNNILFLPFME-NN----SNTIHE-------------------------------------------------------------------------------------D------------GNSCSS---------NIKAKIMAHPHYPRLLAAYINCQK--IGAPP-E--------VVARLEEVC--ATSAHMG-RN-GGGGGGGGNN--------VIGED-P--ALDQFMEAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTL------------------------------------ASTSESVAAFG------------------------------------------------------------------EAMDR--NGS-S-E-EE-VDV---NN-S-------------------LVDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-P-H--------------------YYID--NVLGNP-FPMD-MTPT--------LL---------- [347] 'gi|58011285|gb|AAW62517.1| KNOTTED1-like protein [Selaginella kraussiana]' --------------------------------------------------------------------------------------------------------------------------------------------------------MELRGRRSTSQSPASTQDSTEVSMEQHLPPPRHPHPQQHEMG--AMMVLMEESSNAHHHHLGSTSSMPPHQEQQQNPYRPSAAGEHQQQFFLPGMIKEESSPHHQQQQQNFLLPSSVFSMENICWPTNDQAD---------------LMESMSPESADLCRNLSSQL-----EHFRKEIGTYHGAESSSQQHHLVSSASGSSSGSYGVDKSLSVVPAVSLASDLLGSTSSQSSESE---------MLRAAIVSHPHYPELVVAHMNCHK--VAASP-E--------VVSQIDEII--QNFKDFQ-PP-VAAS---------------LGAN-P--ELDQFMVAYYSMLLKCEKEVRKT----FK----EAVAFCKKLDQ--------------------------------------------QFQVITN------------------------------------GSASSVTSVESD-----------------------------------------------------------------DRNEA--YDS-S-E----DED---SG-A---EVEI------------EVDPMA-KD----------------------KELKEQLM-----------RKYSGYISSLKHEFLKKKKK--GKLPKDSRQILLNWWSVHY-KWPYPS------------------ESEKASLAESTGLDQKQINNWFINQRKRHWK-------PS--DE-------------------------------------------------------LTALSGQ-PSQ-STEASSGS--------------------------------------------------------- [460] 'gi|4240539|gb|AAD13611.1| knotted class 1 homeodomain protein liguleless3 [Zea mays]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR----VVGGAASEASVAGAG---AGGPS------------PSDLTE---------LMKAQIASHPRYPSLLSAYIECRK--VGAHP-H--------VTSLLEEVS--RERRPDA----GAGE---------------IGVD-P--ELDEFMDAYCRVLVRYKEELTRP----FD----EAASFLSSIQA--------------------------------------------QLSDLCS------------------------------------GGSSP-AATAT------------------------------------------------------------------HSDDM--MGS-S-E----DEQ---CS-G---DTDV-PD-----MG-QEHSSHL-GD----------------------HELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARTVLLEWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MRFALME-GVA-GG--SSGTT--------------LYFDTGTIGP-------------------------------- [295] 'gi|3046821|dbj|BAA25546.1| homeobox gene [Nicotiana tabacum]' -------------------------------------------------------MGGGG-----------------------------------------------------------------------------------------------SSGNTSSC--LMGYGDDNNNNN----------SGNAALC--PPPMMMP--PPPINNN----NGES---SNN-------------------------IG----GNNNNNILFLPFMA-NN----NNNPHE------------------DANC------------------------------------------------------------------------------SSSS---------SIKSKIMAHPHYPRLLSAYVNCQK--IGAPP-E--------VVARLEEVC--ATSATIG-RN-SGG---------------IIGED-P--ALDQFMEAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTL------------------------------------TSSSESVAALG------------------------------------------------------------------EAIDR--NGS-S-E-EE-VDV---NN-G-------------------FIDPQA-ED----------------------QELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-P-H--------------------YYMD--NVLGNP-FPMD-ITPT--------LL---------- [342] 'gi|27413549|gb|AAO11694.1| Knotted-1-like homeobox protein H1 [Nicotiana tabacum]' -------------------------------------------------------MEGGG-----------------------------------------------------------------------------------------------SSGNT-SC--LMGYNGDDNNNN----------SGNAALC--PPPMMMMMMPPPINNN----NAES---SNN-------------------------IG----GNNNNNILFLPFMD-NN----NNNPHE------------------DANC-------------------------------------------------------------------------------SST---------SIKSKIMAHPHYPRLLSAYVNCQK--IGAPP-E--------VVARLEEVC--ATSATIG-RN-SGG---------------IIGED-P--ALDQFMEAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTL------------------------------------TSSSESVAALG------------------------------------------------------------------EAIDR--NGNGS-S-EE-VDV---NN-G-------------------FIDLQA-ED----------------------QELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-P-H--------------------YYMD--NVLGNP-FPMD-ITPT--------LL---------- [343] 'gi|54042995|gb|AAV28488.1| homeodomain protein ARBORKNOX1 [Populus alba x Populus tremula]' -------------------------------------------------------MEGGD-----------------------------------------------------------------------------------------------GGSSTTSC--MMAF-GDNSN----------------GLC--P-MMMTPLMSSSSA------HHHH---RAN-------------------------EG----DSSVSNTLFLPLPP-TN----NQGHNR---------------IHSNASGSSSMIIDDHN--------HNNTVTATGCYFMD-------------------------------N------------NDGSSS---------SVKAKIMAHPHYHRLLAAYANCQK--VGAPP-E--------VVARLEEAC--ASAASMA-PA-NTG---------------CIGED-P--ALDQFMEAYCEMLTKYEQELSKP----LK----EAMLFLQRVEC--------------------------------------------QFKALTV------------------------------------SSPISGCG---------------------------------------------------------------------DGNDR--NVS-S-E-EE-VDV---NN-N-------------------FIDPQA-ED----------------------QELKGQLL-----------RRYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AGH-P-H--------------------YYMD--NVLGNP-FPMD-ISPT--------LL---------- [361] 'gi|55276120|gb|AAV49801.1| homeobox transcription factor KN2 [Populus balsamifera subsp. trichocarpa x Populus deltoides]' -------------------------------------------------------MEGGGGD---------------------------------------------------------------------------------------------GGSSTTSC--MMAF-GDNSN----------------GLC--PMMMMTPLMSSSSSAHHQHPHHHH---RAN-------------------------EG----DSSISNTLFLPLPP-TN----NQGHNR---------------IHSNASGSSSMIIDDHNRNH-----NNNTVTATGCYFMD-------------------------------N------------NDGSSS---------SVKAKIMAHPHYHRLLAAYANCQK--VGAPP-E--------VVARLEEAC--ASAASIA-PA-NTG---------------CIGED-P--ALDQFMEAYCEMLTKYEQELSKP----LK----EAMLFLQRVEC--------------------------------------------QFKALTL------------------------------------SSPISGCG---------------------------------------------------------------------DGNDR--NVS-S-E-EE-VDV---NN-N-------------------FIDPQA-ED----------------------QELKGQLL-----------RRYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AGH-P-H--------------------YYMD--NVLGNP-FPMD-ISPT--------LL---------- [373] 'gi|3462612|gb|AAC33008.1| knotted1-like class I homeodomain protein [Pisum sativum] >gi|3426304|gb|AAC32262.1| Knox class 1 pro' -------------------------------------------------------MEGS------------------------------------------------------------------------------------------------SNGSSSYV--MAAF-GENSG----------------GLC--PPMMMMPLVTSSH---HHPINSNN---N---------------------------------NANNTSCLFLPIPN-ST-----NNNNH---------------YTN-NNNSNNTMLQNNH--H-----TTQNTPGLGYYFMD---------NHNNN---------------GAS------------SSSSSS---------AVKAKIMAHPHYHRLLEAYINCQK--VGAPS-E--------VVTRLEEAC--ASAVRMG-GD-AVGSG-------------CIGED-P--ALDQFMEAYCEMLIKYEQELSKP----LK----EAMLFLQRIEV--------------------------------------------QFKNLTV------------------------------------SSSSDNIAC-N------------------------------------------------------------------EGGDR--NGS-S-E-EDQVDL---YN-N-------------------MIDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLEWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-PTH-P-H--------------------YYMD--NVLTNS-FPMD-LSNT--------ML---------- [371] 'gi|33333544|gb|AAQ11888.1| knotted 1 [Nicotiana tabacum]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDELSKLHSAIACSSNNNHVVGVLE---------------------------------------------------------------HITGQQQEGPINNSSVDNNLEKA------------SLEMSD---------LIKAQIANHPLYPNLLSAYLQCRK--VGTPQ-E--------MASILEEIS--KENHLIS-SC-HNTE---------------IGTD-P--ELDDFMESYCAVLLKYKEELSKP----FD----EATTFLNNIES--------------------------------------------QLSSLCK------------------------------------ENLTTTTTTTTSFNSNNNY----------------------------------------------------------LSDEA--GGT-S-D----EDL---GC-R---EMEA-VD-----STQESPANRE-GD----------------------NELKETLM-----------RKYSGYLSSLRKEFLKKRKK--GKLPKDARTALLDWWNTHY-RWPYPT------------------EEEKNRLSEITGLDPKQINNWFINQRKRHWR-------PS--ED-------------------------------------------------------MKYALME-GVS-SGSIAGS----------------MYFDGAGGTGSIGT---------------------------- [327] 'gi|30348865|gb|AAP31410.1| knotted1-like homeodomain protein liguleless4b [Zea mays]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR----HGAAATSEASGVA-----GGPGSPPPPPPP-----AADLTE---------LVKAQIAGHPRYPSLLSAYIDCRK--VGAPS-E--------VATLLEEIG--RERCAAA---SAGGE--------------VVGMD-P--ELDEFMETYCRLLERYKEELSRP----FD----EAASFLSSVRT--------------------------------------------QLSSLCG-------------------------------------------GAAS------------------------------------------------------------------LSDEM--VES-S-E----DEP---CS-G---DTDATTD-----PG-QEHSSRL-AD----------------------RELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MRFALME-GGV-SGS-SSGTT--------------LYFDTGTIGP-------------------------------- [298] 'gi|57157677|dbj|BAD83803.1| KN1 homeobox protein [Triticum aestivum] >gi|57157675|dbj|BAD83802.1| KN1 homeobox protein [Triticu' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEIGHHFG-LGAT----AHG---------------------------------QHHSQLPWGSSPLSAVIAPPPQQQQQ-QQQSA---------------G---YLAHSPLSLNTAPPSG-----SHGGGSGCSNPVLQLAN-GSLLEAC---AKAA---KEP---S-SSS------------YAADVE---------AIKAKIISHPHYSSLLAAYLDCQK--VGAPP-E--------VLARLTAVA--QDLELRQ-RT-ALGSLG-------------TATE-P--ELDQFMEAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------IDAHG-VD----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKDARQQLLSWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWK-------PS--DE-------------------------------------------------------MQFVMMD-AYH-PPN---A-----A----------FYMD------GHFVNDSGLYRF--------G----------- [363] 'gi|85543300|gb|ABC71530.1| KNOTTED1 homeodomain protein [Lithachne humilis]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-LGAS----SHGHG----H-------------------------HHHHHHHPWGSS-LSAVVAPPPQ------PPSA---------------GAGAGMPNTPLTLNTAPTP------GGNGGGGCGNPVLQLAN-GSLLDAC---AKAK---EPS---APSSS------------YAADVE---------AIKAKIISHPHYSSLLAAYLDCQK--VGAPP-E--------VAARLTALA--QDLELRQ-RT-SLSGLG-------------AATE-P--ELDQFMEAYHEMLMKYREELTRP----LQ----EAMEFLRRVES--------------------------------------------QLNSLSI------------------------------------SGRPL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------VDAHG-VD----------------------QELKHQLL-----------RKYSGYLSSLKQELSKKKKK--GKLPKDARQQLLNWWDMHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWK-------PS--DE-------------------------------------------------------MQFVMMD-GYH-PTN---A----------------TWTA------ASSTTAG------------------------- [350] 'gi|32351475|gb|AAP76321.1| homeobox transcription factor KNOTTED1 [Zea mays] >gi|22351|emb|CAA43605.1| Kn1 [Zea mays] >gi|30267' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEITQHFG-VGA---S-SHGHGHGQHH-------------------------HHHHHHHPWASS-LSAVVAPLPP-----QPPSA---------------G-------LPLTLNTVA--------ATGNSGGSGNPVLQLANGGGLLDAC---VKAK---EPS---S-SSP------------YAGDVE---------AIKAKIISHPHYYSLLTAYLECNK--VGAPP-E--------VSARLTEIA--QEVEARQ-RT-ALGGLA-------------AATE-P--ELDQFMEAYHEMLVKFREELTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------VDAHG-VD----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKEARQQLLSWWDQHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWK-------PS--EE-------------------------------------------------------MHHLMMD-GYH-TTN---A----------------FYMD------GHFINDGGLYRL--------G----------- [359] 'gi|57157673|dbj|BAD83801.1| KN1 homeobox protein [Triticum aestivum] >gi|6942297|gb|AAF32398.1| KNOTTED-1-like homeobox protein' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEIGHHFG-LGAT----AHG---------------------------------QHHSQLPWGSSPLSAVIAPPP-QQQQ-QQQSA---------------G---YLAHSPLSLNTAPPSG-----SHGGGTGCSNPVLQLAN-GSLLEAC---AKAA---KEP---S-SSS------------YAADVE---------AIKAKIISHPHYSSLLAAYLDCQK--VGAPP-E--------VLARLTAVA--QDLELRQ-RT-ALGSFG-------------TATE-P--ELDQFMEAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------IDAHG-VD----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKDARQQLLSWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWK-------PS--DE-------------------------------------------------------MQFVMMD-AYH-PPN---A-----A----------FYMD------GHFVNDSGLYRF--------G----------- [362] 'gi|18389212|gb|AAL67665.1| invaginata [Antirrhinum majus]' -------------------------------------------------------MEGG------------------------------------------------------------------------------------------------GGSSSNSC--MIGF-GENTS-------------SNNGFC--PMTMMMMPPPSMAS-----------------------------------------------SHPNGNTLFFPLPSTNN---SHQGLNH--------------------RTSASTMLEDQH--------NNNTITSTGYYFMD---------------------------------------------GNDND---------SVKAKIMAHPYYHKLLAAYINCQK--IGAPP-E--------VAVKLEEAC--ASAATMG-RN-SVS---------------RIGED-P--ALDQFMEAYCEMLSKYEQELSKP----FR----EAMLFLSRIEC--------------------------------------------QFKALTL------------------------------------SSSDSACG---------------------------------------------------------------------EAMDR--HGS-S-E-EE-IDV---DN-S-------------------LIDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAEQTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-PGH--------------------YYMD--NVLGNP-FAMD-ILPT--------LL---------- [351] 'gi|4589449|dbj|BAA76750.1| KN1-type homeobox protein [Nicotiana tabacum]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDELSKLHSAIACSSNNNHVVGVLE---------------------------------------------------------------HITGQQQEGPINNSSVDNNLEKA------------SLEMSD---------LIKAQIANHPLYPNLLSAYLQCRK--VGAPQ-E--------MASILEEIS--KENHLIS-SG-HNTE---------------IGTD-P--ELDDFMESYCAVLLKYKEELSKP----FD----EATTFLNNIES--------------------------------------------QLSSLCK------------------------------------ENLTTTTTTTTSFNSNNNY----------------------------------------------------------LSDEA--GGT-S-D----EDL---CC-G---EMEA-AD-----STQESPANRE-GD----------------------NELKETLM-----------RKYSGYLSSLRKEFLKKRKK--GKLPKDARTALLEWWNTHY-RWPYPT------------------EEEKNRLSEITGLDPKQINNWFINQRKRHWR-------PS--ED-------------------------------------------------------MKYALME-GVS-SGSIAGS----------------MYFDGAGGTGSIGT---------------------------- [327] 'gi|11037020|gb|AAG27464.1| knotted class I homeodomain KNOX [Medicago truncatula]' -------------------------------------------------------MEGS------------------------------------------------------------------------------------------------SNGSCSYV--MGAF-GENSG----------------GLC--PPMMMMPLVTSSHHNAHHPINSNN---NNN-------------------------NNNNNTNANNTTGLFLPIPN-ST----NNNNNH---------------YTNCNNNTSSIMLQNNH----------QNTPGLGYYFMD---------NINNH---------------GSS------------SSSSSS---------SVKSKIMAHPHYHRLLEAYINCQK--VGAPS-E--------VVARLEEAC--ATAVRMG-GD-AVGSG-------------CLGED-P--ALDQFMEAYCEMLIKYEQELSKP----LK----EAMLFLQRIEV--------------------------------------------QFKNLTV------------------------------------SSSSDNIAC-S------------------------------------------------------------------EGGDR--NGS-S-E-EDHVDL---YN-N-------------------MIDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLEWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-PSH-P-H--------------------YYMD--NVLTNS-YPMD-LSNT--------ML---------- [381] 'gi|26185808|emb|CAD58394.1| putative knotted-1-like protein [Helianthus tuberosus]' -------------------------------------------------------MESGG-----------------------------------------------------------------------------------------------DGGGTSSC--LMSF-GDTNNNINNSSS-----NNNNSNN--NIGSLCLPPNPPGAYN---------------------------------------------TTTNNNNLIFS----------------------------------DHHPSA-MMLEDN---------NININDGVGLAFMN-----------------------------------------------PSS---------SVKAKIMSHPHYPRLLSAYLNCQK--IGAPP-E--------VVERLEEAC--RASVVAA-MS-SRSGGAGTSDGSGGGMNMIIGQD-P--ALDQFMEAYCEMLIKYEQELSKP----FK----EAMLFLSRMES--------------------------------------------QFKAITF------------------------------------SNSDSGCG--E------------------------------------------------------------------GGMDR--NGS-S-E-EE-LDVDM-NN-G-------------------MVDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------EAQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-P-H--------------------YFID--NIFGNP-YPMD-VS----------LL---------- [362] 'gi|19424064|gb|AAL87330.1| putative homeobox protein [Arabidopsis thaliana]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QSHHQQSSSLFLQSLAPP-----QGTKNK---------------VASSSSPSS---------------------CAPAYSLMEI-HHNEIVAG-GIN---------------PCS------------SSSSSA---------SVKAKIMAHPHYHRLLAAYVNCQK--VGAPP-E--------VVARLEEAC--SSAAAAA-AS-MGPTG-------------CLGED-P--GLDQFMEAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSL------------------------------------SSPSSFSGYGE------------------------------------------------------------------TAIDRNNNGS-S-E-EE-VDM---NN-E-------------------FVDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-ATH-PHH--------------------YFMD--NVLGNP-FPMDHISST--------ML---------- [326] 'gi|15220767|ref|NP 176426.1| STM (SHOOT MERISTEMLESS); transcription factor [Arabidopsis thaliana] >gi|20141647|sp|Q38874|STM A' -------------------------------------------------------ME--------------------------------------------------------------------------------------------------SGSNSTSC--PMAFAGDNSDG---------------PMC--PMMMMMPPIMTSH-QHHGHDHQHQ-QQEHD-------------------------GYAYQSHHQQSSSLFLQSLAPP-----QGTKNK---------------VASSSSPSS---------------------CAPAYSLMEI-HHNEIVAG-GIN---------------PCS------------SSSSSA---------SVKAKIMAHPHYHRLLAAYVNCQK--VGAPP-E--------VVARLEEAC--SSAAAAA-AS-MGPTG-------------CLGED-P--GLDQFMEAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSL------------------------------------SSPSSFSGYGE------------------------------------------------------------------TAIDRNNNGS-S-E-EE-VDM---NN-E-------------------FVDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-ATH-PHH--------------------YFMD--NVLGNP-FPMDHISST--------ML---------- [382] 'gi|85543292|gb|ABC71526.1| KNOTTED1 homeodomain protein [Panicum miliaceum]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YG-LGA---S-GHGHG----Q-------------------------HHHYHHHPWGSS-LSAVVAPPPQ-----PPPSA---------------V-------LPLTLNTAATLN-----SGANGGAGGNPVLQLAHGGSLLDAC---IKAK---EPS---S-SSP------------YAGDVG---------AIKAKIISHPHYHSLLAAYLECQK--VGAPP-E--------VSARLTAMA--QELEARQ-RT-ALGGLG-------------AATE-P--ELDQFMEAYHEMLVKFREELTRP----LQ----EAMEFMRRVES--------------------------------------------QLSSLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------VDAHG-VD----------------------QELKHHLL-----------KMYSGYLSSLKQELSKKKKK--GKLPKEARQQLLGWWDLHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWK-------PS--EE-------------------------------------------------------MHHLMMD-GYH-TTG---A---------------------------------------------------------- [334] 'gi|1167916|gb|AAC49148.1| class I knotted-like homeodomain containing protein; Method: conceptual translation supplied by autho' -------------------------------------------------------ME--------------------------------------------------------------------------------------------------SGSNSTSC--PMAFAGDNSDG---------------PMC--PMMMMMPPIMTSH-QHHGHDHQHQ-QQEHD-------------------------GYAYQSHHQQSSSLFLQSLAPP-----QGTKNK---------------VASSSSPSS---------------------CAPAYSLMEI-HHNEIVAG-GIN---------------PCS------------SFSSSA---------SVKAKIMAHPHYHRLLAAYVNCQK--VGAPP-E--------VVARLEEAC--SSAAAAA-AS-MGPTG-------------CLGED-P--GLDQFMEAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSL------------------------------------SSPSSFSGYGE------------------------------------------------------------------TAIDRNNNGS-S-E-EE-VDM---NN-E-------------------FVDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-ATH-PHH--------------------YFMD--NVLDNP-FPMDHISST--------ML---------- [382] 'gi|32351469|gb|AAP76320.1| homeobox transcription factor GNARLY1 [Zea mays]' ---------------------------------------------------------MDQ------------------------------------------------------------------------------------------NFGNLGTGAGSSGGCGGSNSNSKAVAAVSSSSFLQL-PLSTAAA--AS------PAYYGAP--------------------------------------------------L-----------ALLHHGTTAGP---------------SSS---QQQQHQ-----------------------------SPYAKH----G----------------AEM------------SAAEAD---------AIKAKIVAHPQYSALLAAYLDCQK--VGAPP-D--------LLERLTAMA--AKLDARP-PG-R----H-------------GPRD-P--ELDQFMEAYCNMLVKYREELTRP----ID----EAMEFLKRVEA--------------------------------------------QLDSIAG------------------------------------------GGSSSSARLSLA----------------------------------------------DG-----------KSSEG--AGS-S-EDDD-MDP---SG-R---ENEP-PE----------IDPRA-ED----------------------KELKYQLL-----------KKYSGYLSSLRQEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAEATGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MPFVMME-GFH-PQT---AA----A----------LYLDG-----GAFM-ADGMTTY--------RLGS-------- [360] 'gi|20977642|gb|AAM28231.1| knotted-1-like protein 1 [Helianthus annuus]' -------------------------------------------------------MESDG-----------------------------------------------------------------------------------------------DGGGTSSC--LMSF-GDTTNNINNNSS-----NNNNSNN--NIGSLCLPPNPPGAYN---------------------------------------------TTTNNNNLIFS----------------------------------DHHPSA-MMLEDN---------NININDGVGLAFMN-----------------------------------------------PSS---------SVKAKIMSHPHYPRLLSAYLNCQK--IGAPP-E--------VVERLEEAC--RASVVAA-MS-SCSGGAGTSDGSGGGMNMIIGQD-P--ALDQFMEAYCEMLIKYEQELSKP----FK----EAMLFLSRIES--------------------------------------------QFKAISI------------------------------------STSDSAGG--E------------------------------------------------------------------GGMDK--NGS-S-E-EE-VDV---NN-N-------------------LIDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------EAQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-P-H--------------------YFMENMNILGNP-YPMD-VS----------LL---------- [362] 'gi|1170312|sp|P46608|HSBH1 SOYBN Homeobox protein SBH1 >gi|485406|gb|AAA20882.1| SBH1' -------------------------------------------------------MEGGS-----------------------------------------------------------------------------------------------SSSNGTSY--LLAFGENNSG----------------GLC---PMTMMPLVTSHHAGHHPINPSNN-------------------------------------NNVNTNCLFIP-------------------------------NCSNSTGTPSIMLHNNHNNNKTDDDDNNNNTGLGYYFMESDHHHHHHGNNNNN---------------GSS------------SSSSSS---------AVKAKIMAHPHYHRLLAAYVNCQK--VGAPP-E--------VVARLEEAC--ASAATMAGGDAAAGSS-------------CIGED-P--ALDQFMEAYCEMLTKYEQELSKP----LK----EAMLFLQRIEC--------------------------------------------QFKNLTI------------------------------------SSSDFASN---------------------------------------------------------------------EGGDR--NGS-S-E-ED-VDL---HN---------------------MIDPQA-ED----------------------RDLKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLEWWNRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-PSH-P-H--------------------YYMD--NVLGNP-FPMD-LSHP--------ML---------- [379] 'gi|7940290|gb|AAF70849.1| F2401.9 [Arabidopsis thaliana]' -------------------------------------------------------ME--------------------------------------------------------------------------------------------------SGSNSTSC--PMAFAGDNSDG---------------PMC--PMMMMMPPIMTSH-QHHGHDHQHQ-QQEHD-------------------------GYAYQSHHQQSSSLFLQSLAPP-----QGTKNK---------------VASSSSPSS---------------------CAPAYSLMEI-HHNEIVAG-GIN---------------PCS------------SSSSSA---------SVKAKIMAHPHYHRLLAAYVNCQK--VGAPP-E--------VVARLEEAC--SSAAAAA-AS-MGPTG-------------CLGED-P--GLDQFMEAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSL------------------------------------SSPSSFS-----------------------------------------------------------------------AIDRNNNGS-S-E-EE-VDM---NN-E-------------------FVDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-ATH-PHH--------------------YFMD--NVLGNP-FPMDHISST--------ML---------- [377] 'gi|85543304|gb|ABC71532.1| KNOTTED1-like homeodomain protein [Pharus lappulaceus]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YGVLGAGA------------S-------------------------TTTHHHHPWASS-LSAVVAPPPP------------------------------LPPTPLTLTTTPTA----------TTTTNNPVLQLAN-GNLLDACG--GKAK---DPS---S-SSS------------YAADVE---------AIKAKIISHPHYSSLLAAYLDCQK--VGAPP-E--------VATRLTAVA--HELEARQ-RT-ALGGLG-------------AAME-P--ELDQFMEAYHEMLVKYREELARP----LQ----EAMEFLRKVEL--------------------------------------------QLNSLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------IDAHG-VD----------------------QELKHQLL-----------KKYSGYLSTLKQELSKKKKK--GKLPKDARQQLLNWWELHY-KWPYPS------------------ESQKMALAESTGLDLKQINNWFINQRKRHWK-------PS--DE-------------------------------------------------------MQFVMMD-GYH-PTN---A-----A----------FYMD------GHFINDSG------------------------ [336] 'gi|85543290|gb|ABC71525.1| KNOTTED1 homeodomain protein [Sorghum bicolor]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-VGASSHSHGHGHG------------------------------QHHHHHHPWASS-LSAVVAPPPQ-----QPPTA---------------G-------LPLTLNTVA--------ATGNSGASGNPVLQLANGGSLLDAC---VNVKAKGEPS---S-SSP------------YAGDLE---------AIKAKIISHPHYYSLLAAYLECKK--VGAPP-D--------VSARLTAMA--QELEARQ-RT-ALSGLG-------------AATE-P--ELDQFMEAYHEMLVKFKEELTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------VDVHG-VD----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKMKK--GKLPREARQQHLSWWDLHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWK-------PS--EE-------------------------------------------------------MHHLMMD-GYY-TNT--------------------FFMD------GHFINDGG------------------------ [348] 'gi|5103727|dbj|BAA79225.1| knotted1-type homeobox protein OSH43 [Oryza sativa]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFASLAGGGSSSTTARLPELISPENPDHISPPPL---------------LYQLLAGPESSARQHGHDGH-----HHGGGGGEAAAAAVQG-QVS--------------------------------------PAGAEA---------AVKAEIMSHPQYSALLAAYLGCKK--VGAPP-D--------VLTKLTAVP--AA-QQLDEADGHPRRRHEP----------QRDDD-PD-QLDQFMDAYCSMLTRYREELERP----IL----EAAEFFSRVET--------------------------------------------QLDSLAE-----------------------------------------------------------------------------------------------------------------SNCEG--TGS-S-E-EE-Q------------------------------DP---SD----------------------KQLKHQLL-----------RKYGGSLGDLRQVFSKRTKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------EMEKMTLAQTTGLDQKQINNWFINQRKRHWK-------PTPVAG-------------------------------------------------------TAFPTME-----AAGGGFRH----SGHGGGL---AAAAALPLYMGR-PFVVDGMYRL--------GS---------- [341] 'gi|3327271|dbj|BAA31699.1| PKn2 [Ipomoea nil]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDETTYGFPSTSCDYADKA--LMSPDNNNLMMMDYPYAYNYNYNYHPGGAAADTIP----------------------------------------------------------------------------------------------------------------------------FCGASTEVAAATTTCVDNED------------DDVSSV---------MIKAKIASHPCYPKLLHAYIDCQK--VGAPP-E--------IATVLDEIR--REDDELRKRGGGGAVSS------------CLGAD-P--ELDEFMETYYDMLVKYKSDLSKP----FH----EATTFLNTIET--------------------------------------------QLSNLCK------------------------------------------------------------------------------------------------------------------DESG--AVS-S-D----EED---SG-G---ETDIQQE----------SITKT-EE----------------------RQLKNTLL-----------RKYGSHLSSLKLEFSKKKKK--GKLPKEARQTLLDWWSDHY-KWPYPT------------------EADKIALAESTGLDQKQINNWFINQRKRHWK-------PS--ES-------------------------------------------------------MQLAVME-NLT-GQ---------------------FFSSDDS----------------------------------- [322] 'gi|28195122|gb|AAO33774.1| knotted protein TKN4 [Lycopersicon esculentum]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDELSKLHSAIVCSHSRRQQEVEVE---------------------------------------AEAGPTIINNTTTSFAAVHHHYCQLEAAVAADHNHHQ-----NNTKS------------TTNMSD---------LIKAQIANHPLYPNLLSAYLQCRK--VGAPQ-E--------MTSILDEIS--KENNLIS-SSRHSSE---------------IGAD-P--ELDEFMESYCAVLVKYKEEFSKP----FD----EATSFLSNIES--------------------------------------------QLSSLCK------------------------------------DNLITSTSFNNY-----------------------------------------------------------------ISDEA--GGS-S-D----EDL---GC-E---EMEA-AD------SQESPANCE-GD----------------------NELKEMLM-----------RKYSGYLSSLRKEFLKKRKK--GKLPKEARIVLLDWWKNHY-RWPYPT------------------EEEKNRLSEMTGLDQKQINNWFINQRKRHWR-------PS--ED-------------------------------------------------------MKFALME-GVS-AGS--------------------MYFDGSGGTGNIGT---------------------------- [335] 'gi|31323451|gb|AAP47027.1| knotted homeodomain protein 4 [Lycopersicon esculentum]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVLMMDELSKLHSAIVCSHSRRQQEVEVE---------------------------------------AEAGPTIINNTTTSFAAVHHHYCQLEAAVAADHNHHQ-----NNTKS------------TTNMSD---------LIKAQIANHPLYPNLLSAYLQCRK--VGAPQ-E--------MTSILDEIS--KENNLIS-SSRHSSE---------------IGAD-P--ELDEFMESYCAVLVKYKEEFSKP----FD----EATSFLSNIES--------------------------------------------QLSSLCK------------------------------------DNLITSTSFNNY-----------------------------------------------------------------ISDEA--GGS-S-D----EDL---GC-E---EMEA-AD------SQESPANCE-GD----------------------NELKEMLM-----------RKYSGYLSSLRKEFLKKRKK--GKLPKEARIVLLDWWKNHY-RWPYPT------------------EEEKNRLSEMTGLDQKQINNWFINQRKRHWR-------PS--ED-------------------------------------------------------MKFALME-GVS-AGS--------------------MYFDGSGGTGNIGT---------------------------- [338] 'gi|3024577|sp|Q41853|RSH1 MAIZE Homeobox protein rough sheath 1 >gi|1008879|gb|AAA86287.1| RS1 gene product' ---------------------------------------------------------MDQ------------------------------------------------------------------------------------------SFGNLGAGAGSSS--GGSNSKA-AATAVSSSSFLQL-PLST-----AS------PAYYGAP--------------------------------------------------L-----------ALLHH-AAAAP---------------SSSQQHQQQQHH-----------------------------HHYARH----G----------------AEM------------SAAEAE---------AIKAKIVAHPQYSALLAAYLDCQK--VGAPP-D--------VLERLTAMA--AKLDASA-AG-R----H-------------EPRD-P--ELDQFMEAYCNMLVKYREELTRP----ID----EAMEFLKRVEA--------------------------------------------QLDCISG------------------------------------------GGGSSSARLSLA----------------------------------------------DG-----------K-SEG--VGS-S-E-DD-MDP---NG-R---ENDP-PE----------IDPRA-ED----------------------KELKYQLL-----------KKYSGYLSSLRQEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MPFVMME-GFH-PQN---AA----A----------LYMD------GPFM-RDGM--Y--------RLGS-------- [351] 'gi|6016221|sp|O22299|LET6 LYCES Homeobox protein knotted-1-like LET6 >gi|2529701|gb|AAC49917.1| class I knotted-like homeodomai' -------------------------------------------------------MEGGS-----------------------------------------------------------------------------------------------SGNTSTSCLMMMGY-GDHENNNNNNGNGNGNGNGNVTICAPPMMMMMPPPPPSLTNNNNA------------------------------------------ETSNNNILFLPFMDNNN----NNNPQE-------------------------------------------------------------------------------------D------------NNSSSS---------SIKSKIMAHPHYHRLLTAYLNCQK--IGAPP-E--------VVARLEEIC--ATSATMG-RS-SSSSGGG-----------IIGED-P--ALDQFMEAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTL------------------------------------APNSSHESALG------------------------------------------------------------------EAMDR--NGS-S-D-EE-VDV---NN-S-------------------FIDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLVDWWLRHI-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-P-H--------------------YYMD--NVLANH-FPMD-MTPS--------LL---------- [355] 'gi|1946218|emb|CAA96510.1| kn1-like protein [Malus x domestica] >gi|6016215|sp|O04134|KNAP1 MALDO Homeobox protein knotted-1-li' ---------------------------------------------------------MED-------------------------------------------------------------------------------------------YNNQMDHESSGGRGNF-------LYASPNLGGNYGRAASDHQM--GINTFHLQSSGGGGGGGSGDQCNFQS---------------------------------------------------PGTHPINVKTE---------------ATTS-QHGHPKFQYNNNNNN-----H---------HLVSSSRGHQPVVHQLQHNLDL---QND---D-HSL------------SSNEVE---------AIKAKIIAHPQYSNLVEAYMDCQR--VGAPS-D--------VVPRLSVAR--QEFEARQ-RS-SGTSRE-------------TSKD-P--ELDQFMEAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMLGN------------------------------------------NNNAPPLRIFSPSE---------------------------------------------------------DKCEG--IGS-S-E-DE-QEN---SG-G---ETEV-PE----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLSSLKQELSKKKKK--GKLPKEARQKLLSWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQN----A----A----------LYMD------GHYT-GDVH--Y--------RLGP-------- [398] 'gi|85543302|gb|ABC71531.1| KNOTTED1-like homeodomain protein [Leersia virginica]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-LGTSGHG-GHHHHHQGHQ-------------------------QQQQQHHPWASS-HSAVVAPPPP-----QTQQQ---------------SQAVTMAHSPLTLSTAAAA----------AAAAGVPVLQLAN-GNLMDACGGSGKAK---EASASAS-ASF------------AAVNVE---------AIKAKIISHPHYSSLLAAYLDCQK--VGAPP-E--------VAARLAAVA--QDLELRQ-RT-ALGGLG-------------AATE-P--ELDQFMEAYQEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNTLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------IDAHG-VD----------------------QELKHHLL-----------NKYSGYLSSLKQELSKKKKK--GELPKDARQQLLSWWELHC-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWK-------PS--DE-------------------------------------------------------MQFVMMD-GYH-PTN---A----------------FYMD------GHFINVSG------------------------ [360] 'gi|1171924|sp|P46609|OSH1 ORYSA Homeobox protein OSH1 >gi|540536|dbj|BAA03959.1| homeobox protein [Oryza sativa (japonica culti' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEISHHFGVVGASG---VHGG-----H-------------------------QHQHHHHPWGSS-LSAIVAPPPPPQLQQQQTQA---------------G---GMAHTPLTLNTAA-------------AAVGNPVLQLAN-GSLLDAC---GKAK---EAS---A-SAS------------YAPDVE---------AIKAKIISHPHYSSLLAAYLDCQK--VGAPP-E--------VAARLTAVA--QDLELRQ-RT-ALGVLG-------------AATE-P--ELDQFMEAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNTLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------IDAHG-VD----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKDARQQLLNWWELHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWK-------PS--DE-------------------------------------------------------MQFVMMD-GYH-PTN---AA----A----------FYMD------GHFINDGGLYRL--------G----------- [361] 'gi|50918407|ref|XP 469600.1| homeobox 1 protein OSH1 [Oryza sativa (japonica cultivar-group)] >gi|41469276|gb|AAS07158.1| homeo' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEISHHFGVVGASG---VHGG-----H-------------------------QHQHHHHPWGSS-LSAIVAPPPPPQLQQQQTQA---------------G---GMAHTPLTLNTAA-------------AAVGNPVLQLAN-GSLLDAC---GKAK---EAS---A-SAS------------YAADVE---------AIKAKIISHPHYSSLLAAYLDCQK--VGAPP-E--------VAARLTAVA--QDLELRQ-RT-ALGVLG-------------AATE-P--ELDQFMEAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNTLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------IDAHG-VD----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKDARQQLLNWWELHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWK-------PS--DE-------------------------------------------------------MQFVMMD-GYH-PTN---AA----A----------FYMD------GHFINDGGLYRL--------G----------- [361] 'gi|793847|emb|CAA58503.1| Knox3 [Hordeum vulgare] >gi|3024086|sp|Q43484|KNOX3 HORVU Homeobox protein KNOX3 (Hooded protein)' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEIGHHFG-LGAT----AHG---------------------------------QHHSQLPWGSSPLSAVISPPPQQQQQHQQQSA---------------G---YLAHSPLSLNTAPPGV-----SHGGGSGCSNPVLQLAN-GSLLEAC---AKAA---KEP---S-SSS------------YAADVE---------AIKAKIISHPHYSSLLAAYLDCQK--VGAPP-E--------VSARLTAVA--QDLELRQ-RT-ALGGLG-------------TATE-P--ELDQFMEAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--TGS-S-E-ED-QEG---SG-G---ETEL-PE----------IDAHG-VD----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKEARQQLLSWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWK-------PT--DE-------------------------------------------------------MQFVMMD-AYH-PPN---A-----A----------FYMD------GHFVNDSGLYRF--------G----------- [364] 'gi|2522484|gb|AAB81079.1| knotted class 1 homeodomain protein [Hordeum vulgare]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEIGHHFG-LGAT----AHG---------------------------------QHHSQLPWGSSPLSAVISPPPQQQQQHQQQSA---------------G---YLAHSPLSLNTAPPGV-----SHGGGSGCSNPVLQLAN-GSLLEAC---AKAA---KEP---S-SSS------------YAADVE---------AIKAKIISHPHHSSLLAAYLDCQK--VGAPP-E--------VSARLTAVA--QDLELRQ-RT-ALGGLG-------------TATE-P--ELDQFMEAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSI------------------------------------SVRSL------------------------------------------------------------------------RNILS--TGS-S-E-ED-QEG---SG-G---ETEL-PE----------IDAHG-VD----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKEARQQLLSWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWK-------PT--DE-------------------------------------------------------MQFVMMD-AYH-PPN---A-----A----------FYMD------GHFVNDSGLYRF--------G----------- [364] 'gi|7340350|gb|AAF23753.2| shoot meristemless [Brassica oleracea] >gi|20139943|sp|Q9M6D9|STM BRAOL Homeobox protein Shootmeriste' -------------------------------------------------------ME--------------------------------------------------------------------------------------------------SGSNSTSC--PMAFAGDNSDG---------------PMC--PMMMMMMPVITSHQQHHGHDQQHQHQQQHD-------------------------GYAYQSHHQHSSLLFLQSLTPPS----QEAKNK---------------VRSSCSPSS---------------------GAPAYSFMEINHQNELLAG-GLQ---------------S--------------PVLSSL---------LVKAKIMAHPHYHRLLLAYVNCQK--VGAPP-E--------VQARLEETC--SSAAAAA-AS-MGPTG-------------SLGED-P--GLDQFMEAYCEMLVKYEQELSKP----FK----EAMVFLQHVEC--------------------------------------------QFKSLSL------------------------------------SSPSSL-GYGE------------------------------------------------------------------AAIERNNNGS-S-E-EE-VDM---NN-E-------------------FVDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-ATH-PLH--------------------YFMG--NVLGNP-FPIDHISGT--------ML---------- [383] 'gi|15667619|dbj|BAB68310.1| transcription factor OSH3 [Oryza sativa (indica cultivar-group)]' ---------------------------------------------------------MEE-----------------------------------------------------------------------------------------LEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGGAR--QAVAPATRDGGDGGGR-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AGVLDD---------PVKARIVSHPRYHRLLAAFLDCHK--VGCPA-E--------AAEEIAAAA--RVREARQ-RA-AAAASRMP----------PAPED-P--ELDQFMEDYCKLLVECKEELSRP----LQ----EAEEFLRTVES----------------------------------------------ELNSI------------------------------------NSGPPLTALIS------------------------------------------------------------------ESKAG--LDS-S-D-DD-EHE---DG-S---GMEM-MEAAEDED-LGIIDPRS-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------MQFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPASAVY--------TARPDHGVWRA- [365] 'gi|50872441|gb|AAT85041.1| knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFASLAGGGSSSTTARLPELISPENPDHISPPPL---------------LYQLLAGPESSARQHGHDGH-----HHGGGGGEAAAAAVQG-QVS--------------------------------------PAGAEA---------AVKAEIMSHPQYSALLAAYLGCKK--VGAPP-D--------VLTKLTAVP--AA-QQLDEADGHPRRRHEP----------QRDDD-PD-QLDQFMDAYCSMLTRYREELERP----IL----EAAEFFSRVET--------------------------------------------QLDSLA----------------------------------------------------------------------------------------------------------------------G--TGS-S-E-EE-Q------------------------------DP---SD----------------------KQLKHQLL-----------RKYGGSLGDLRQVFSKRTKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------EMEKMTLAQTTGLDQKQINNWFINQRKRHWK-------PTPVAG-------------------------------------------------------TAFPTME-----AAGGGFRH----SGHGGGL---AAAAALPLYMGR-PFVVDGMYRL--------GS---------- [336] 'gi|55669501|gb|AAV54618.1| homeobox transcription factor KN1 [Pinus taeda]' -----------------------------------------------------------------------------------------------------------------------------------------------------MERLNTAAAQASSSLYGVNMAEYGDAGVSSMMGLITQHEPEQSEN--IMSTRIPSSFSSFHGHADCLLSAAMFQGSQ-------------------------GDHKLNPQPGMNQQLVSEQSIMSDSSMPLVKTK---------------ACSGLRNQFEFHREQPGNCY-----TDQSSNIPLSPIVTSLASQARG-EARMIPSLD---ANS---A-HFN------------VDNEEH---------AIKSKILAHPQYPSLLGAYIDCQK--IGAPP-E--------AVARLDALT--REHQDPQ-RR--TVS---------------IGMD-P--ELDQFMEAYCEILTKYHEELAKP----FK----EAMLFLKKIET--------------------------------------------QFNSLGK----------------------------------------------GTIRISSPADDD-------------------------------------------------------EKTEG--GGS-S-E-EV-EDG---SG-G---ETDF-QE----------VDHHAVED----------------------RELKNHLL-----------RKYCGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWSLHD-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MHFMVMN-SHS-PHS----A----A----------LYVE------RHMM-TEG---Y--------HLDC-------- [434] 'gi|3327275|dbj|BAA31701.1| PKn3 [Ipomoea nil]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDELYGIHSVLAPSNAPSNNNNNVFSLGVDDIHHHHNHHHHQSS---------------------------------------MMNGGIVISGDEGQLQGQHHHHHHLLVTSSNDNYYNSDENSKGGGGG------------VEMMSD---------VVKAQIASHPLYPNLVSAYIQCRK--VAAPP-E--------MAALLEELS--KVTQPITTAE--------------------IGAD-P--ELDEFMESYCEVLYKYKEELSKP----FD----EAKTFLSSIES--------------------------------------------QLSNLCK------------------------------------DTFPTTSFNSYH-----------------------------------------------------------------SGDEA--GGT-S-E----EDL---SC-G---EVEV-AE-----SQEHLNNNSE-GD----------------------QQIKEMLM-----------RKYSGYLSSLRKEFLKKRKK--GKLPKDARVALLDWWNSHY-RWPYTT------------------EEEKNKLSEATGLDQKQINNWFINQRKRHWR-------PS--ED-------------------------------------------------------MRFALME-GVS-GDVAGS-----------------MFFDAGGGTGNLGI---------------------------- [358] 'gi|85543298|gb|ABC71529.1| KNOTTED1 homeodomain protein [Chasmanthium latifolium]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-VGA------SGHS----Q-------------------------QQQQHHHPWVSA-LSAVVA---------PAPSA---------------G-------LPLTLNTAAT-----------GSSGGNPVLQLANGGSLLDAC---VKAK---ELS---S-SSP------------YAGDVD---------AIKAKIISHPHYYSLLAAYLECQK--VGAPP-E--------VSARLTAMA--QELEARQ-RT-AFGGLG-------------NATE-P--ELDQFMEAYHEMLVKFREELTRP----LQ----EALEFMRRVES--------------------------------------------QLNSLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEL-PE----------VDAHG-VD----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKKKK--GTLPKEARQQLLSWWDLHY-KWPYPS------------------ETQKVALAESTGLNLKQINNWFINQRKRHWK-------PS--EE-------------------------------------------------------MHHLMMD-GYH-TTN---A----------------FYMD------GTSSTTAG------------------------ [334] 'gi|4887608|dbj|BAA77817.1| homeobox gene [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------MDQ------------------------------------------------------------------------------------------SFGNLGGGGG-----AGGSGKA------AASSFLQL-PLSTAAA--AT-------AYYGTP--------------------------------------------------L-----------A-LHQ-AAAAA---------------GPSQYHGHGHPHHGGG-------------------------HHHSKHGGAGG----------------GEI------------SAAEAE---------SIKAKIMAHPQYSALLAAYLDCQK--VGAPP-E--------VLERLTATA--AKLDARP-PG-R----H-------------DARD-P--ELDQFMEAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAG------------------------------------GAH---GGGAGSARLLLA----------------------------------------------DG-----------K-SEC--VGS-S-E-DD-MDP---SG-R---ENEP-PE----------IDPRA-ED----------------------KELKFQLL-----------KKYSGYLSSLRQEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MPFVMME-GFP-PQN---AA----A----------LYMD------GPFM-ADGM--Y--------RLGS-------- [355] 'gi|50933957|ref|XP 476506.1| homeobox gene [Oryza sativa (japonica cultivar-group)] >gi|34395067|dbj|BAC84729.1| homeobox gene' ---------------------------------------------------------MDQ------------------------------------------------------------------------------------------SFGNLGGGGG-----AGGSGKA------AASSFLQL-PLSTAAA--AT-------AYYGTP--------------------------------------------------L-----------A-LHQ-AAAAA---------------GPSQYHGHGHPHHGGG-------------------------HHHSKHGGAGG----------------GEI------------SAAEAE---------SIKAKIMAHPQYSALLAAYLDCQK--VGAPP-E--------VLERLTATA--AKLDARP-PG-R----H-------------DARD-P--ELDQFMEAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAG------------------------------------GAH---GGGAGSARLLLA----------------------------------------------DG-----------K-SEC--VGS-S-E-DD-MDP---SG-R---ENEP-PE----------IDPRA-ED----------------------KELKFQLL-----------KKYSGYLSSLRQEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MPFVMME-GFH-PQN---AA----A----------LYMD------GPFM-ADGM--Y--------RLGS-------- [355] 'gi|1946220|emb|CAA96511.1| kn1-like protein [Malus x domestica] >gi|6016217|sp|O04135|KNAP2 MALDO Homeobox protein knotted-1-li' ---------------------------------------------------------MED-------------------------------------------------------------------------------------------YNNQMDHESSGGRGNF-------LYASPNLGGNYGRAASDHQM--GINTFHLQSSGGGGGGGSGDQCNFQS---------------------------------------------------PGTHPINVKTE---------------ATTS-QHGHQKFQYNNNNNS---------------HLVSSSRGHQPVIHQLQNNFDL---LND---D-HSL------------SSNEVE---------AIKAKIIAHPQYSNLLEAYMDCQR--VGAPS-D--------VVARLSVAR--QEFEARQ-RS-SGTSRE-------------TSKD-P--ELDQFMEAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMLGN------------------------------------------NNNAPPLRIFSPSE---------------------------------------------------------DKCEG--IGS-S-E-EE-QEN---SG-G---ETEV-PE----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLSSLKQELSKKKKK--GKLPKDARQKLLSWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQN----A----A----------LYMD------GHYI-GDGH--Y--------RLGP-------- [397] 'gi|50917689|ref|XP 469241.1| putative KNOTTED-1-like homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|40538935|gb|' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQQ---------------LPLLAPDSKAATSSPLCLTL-----D---------NPTSTSTSPAVPSSAPPPAAAL---EPS---R-QSF------------HERETD---------AIKAKIMSHPLYPALLRAFIDCQK--VGAPP-E--------VVGRLSALA--GELDSRA-ED-RYLQG--------------QSSD-P--ELDEFMETYIDMLVSYRQELTRP----IQ----EADQFFRNMEA--------------------------------------------QIDSFTL------------------------------------DD---------------------------------------------------------------------------NGSEG--GNS-S-E-DE-QEA---GG-GDMASAGL-PE---------ITSPCA-ED----------------------KELKSHLL-----------NKYSGYLSSLWRELSKKKKK--GKLPRDARQKLLHWWQLHY-RWPYPS------------------ELEKAALAESTGLDAKQINNWFINQRKRHWK-------PTP-PA-------------------------------------------------------MEYRSLQPAGAASYGGASAG----ASTSGGGSAVVRGME------GQHF-TGGGAYP--------RGDP-------- [337] 'gi|18389214|gb|AAL67666.1| hirzina [Antirrhinum majus]' -------------------------------------------------------MEGSG-----------------------------------------------------------------------------------------------GGG-------MMAF-GENNNN-----------NSNNGFC--PSNMMMPQLASNC------------------------------------------------EGGYSTTPFVPLVPFTNHHHHHQEMNR---------------QRSTVVGGSSMVYEEGHQN------NSNAITSTGYYFMD-------------------------------S------------TNCDES---------SLKAKIMAHPHYHRLLAAYVNCHK--IGAPP-E--------VVSRLEEAA--AAMARHG-TI-------------------SVGED-P--GLDQLMEAYSEMLSKYEQELSKP----FK----EAMLFLSRIES--------------------------------------------QFKALTV------------------------------------SAAR------G------------------------------------------------------------------EAMFR--NGS-S-E-EE-IDV---NN-S-------------------FIDPQA-ED----------------------IELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLEWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAN-P-Q--------------------YYME--NILGNP-FPMD-ISPA--------LL---------- [353] 'gi|3928843|gb|AAC84001.1| homeobox protein [Picea abies]' -----------------------------------------------------------------------------------------------------------------------------------------------------MEHLNAAAAQASSSLYGVSMAEYGDVGVSSMMALMTQHEPHERDS--ILTTSMPSSFSSFHGHAECLLSAAMFQASQ-------------------------GDHKLKRQPEMD-QLVSEQAVMSDSSMPSVKTE---------------GCSSLRNQFEIRREQTGNCY-----TDQSSNAPVSPLVTSLVPQAGG-EARMITSLE---ADS---S-HFS------------GGKEAE---------AIKAKILAHPQYPSLLGAYIDCQK--IGAPP-E--------VVARLDALT--HEYENQQ-HR-TTVS---------------IGMD-P--ELDQFMEAYCEMLTKYHEELTKP----FK----EAMSFLKKIEA--------------------------------------------QLNSLSK----------------------------------------------GTIRISPSAEND-------------------------------------------------------EKTEG--GAS-S-E-EV-EDG---SG-G---ETDF-QE----------VDHHAVED----------------------RELKDHLL-----------RKYSGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQLMAMD-GQS-PHG----A----T----------LYVE------RHLM-TEG---Y--------HLDC-------- [434] 'gi|4099828|gb|AAD00692.1| homeobox transcription factor SKN2 [Picea mariana]' ----------------------------------------------------MKKLFHSD-----------------------------------------------------------------------------------------MEHLNAAAAQASSSLYGVSMAEYGDVGVSSMMALMTQHEPHERDS--ILTTSMPSSFSSFHGHAECLLSAAMFQASQ-------------------------GDHKLKRQPEMD-QLVSEQAVMSDSSMPSVKTE---------------GCSSLRNQFEIRREQTGNCY-----TDQSSNAPVSPLVTSLVPQAGG-EARMITSLE---ADS---S-HFS------------GGNEAE---------AIKAKILAHPQYPSLLGAYIDCQK--IGAPP-E--------VVARLDALT--HEYENQQ-HR-TTVS---------------IGMD-P--ELDQFMEAYCEMLTKYHEELTKP----FK----EAMSFLKKIEA--------------------------------------------QLNSLSK----------------------------------------------GTIRISPSAEND-------------------------------------------------------EKTEG--GAS-S-E-EV-EDG---SG-G---ETDF-QE----------VDHHAVED----------------------RELKDHLL-----------RKYSGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQLMAMD-GQS-PHG----A----T----------LYVE------RHLM-TEG---Y--------HLDC-------- [442] 'gi|20977646|gb|AAM28232.1| knotted-1-like protein 2 [Helianthus annuus]' ----------------------------------------------------------ME-----------------------------------------------------------------------------------------DYLGQNSSSSNTGTTSTTFLYGSGGV--APDTSCLYGRGGNESDP--GHGGFHHPD---------------------------------------------------------------------------------------------------------------------------------------QYHHPMVKIETEKFHN---YPP---S-MVN------------FHNEDE---------ALKAKIISHPHYSNLLQAYMDCQK--VGAPP-E--------VVGRLTAVR--QEYEARQ-RA-NLGCRE-------------NYKD-P--ELDQFMEAYYDMLIKYKEELTRP----IQ----EAMEFMRRIES--------------------------------------------QLSTLTI------------------------------------SSS---SSSSPAGRIFISPDE--------------------------------------------------------SKCEV--IGS-S-DEEQ-ENT---SG-G---ETEV-AE----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLSSLKQELSKKKKK--GKLPKEARQKLLSWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQN--VAT----A----------LYMGD-----HHYM-GDGP--Y--------RLGP-------- [358] 'gi|4099826|gb|AAD00691.1| homeobox transcription factor SKN1 [Picea mariana]' -----------------------------------------------------------------------------------------------------------------------------------------------------MEHLNTAAAQASSSLYGVGMAEYGDAGVSSMMALITQHEPHDSES--IMSTRMPSSFSSFHGHADCLLSAAMFQASQ-------------------------GDHKLKRQPGMD-QLVSEQAVMSDSSMPSVKTE---------------VCSGLRNQFEFHREQTGNCY-----TDQSPNTPVNPLVTSLASQARG-EAQMIPSLD---ANS---P-HFN------------VDNEEY---------AIKSKILAHPQYPSLLGAYIDCQK--IGAPP-E--------AVARLDALT--HEYQNQQ-RR--TVS---------------IGMD-P--ELDQFMEAYCEILTKYHEELAKP----FK----EAMTFLMKIEA--------------------------------------------QFNSLGK----------------------------------------------GTIRISPPAEND-------------------------------------------------------EKTEG--GGS-S-E-EV-EDG---SG-G---ETDF-QE----------VDHHAVED----------------------RELKDHLL-----------RRYSGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWSLHD-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MHFMVMN-SHS-PHS----A----A----------LYVE------RHLM-TEG---Y--------HLDC-------- [433] 'gi|11463941|dbj|BAB18584.1| CRKNOX2 [Ceratopteris richardii]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATNAVSSTHS--ASSLSYYSTRIVEPYLQSELLQGTQGFHRP-------------------------HTSHCQRQVTSSVESLELS-AVAGERGKADTAI---------------AIDRSQGFEILSPT-CNYVV-----SSNGETVLANPSLDSTGHANHEEGPSLPSRSM---------------------------ADRDD---------LIRTKIVSHPSYPRLVMAYVNCYK--IGAPE-D--------AALILEEVS--RKYQEIR-SS-SSEV---------------IGAD-P--ELDNFMELYCNVLQRYHEELTHP----YK----EAMAFFKKIEL--------------------------------------------QLDAISK------------------------------------GSLSLSQSGETKTEANSDSAW--------------------------------------------------------HGQTG--AAPSIEDEPEEGDM---SS-G---EVDFHDE---------MIDPLA-ED----------------------QKLKEQLL-----------RKYSGYIFKLKQEFLKKKKK--GKLPREARQMLLDWWTQHY-KWPYPS------------------EAEKTALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQYVMMD-SPA-GQTQHTFL----RPH--------SHIASQHLSPYTVLQTMEVAAG--------AAPSATMMSSLH [430] 'gi|4098240|gb|AAD00251.1| knotted 2 protein [Lycopersicon esculentum]' -------------------------------------------------------MEGGS-----------------------------------------------------------------------------------------------SGNTSTSCLMMMGY-GDHENNNNNNGNGNGNGNGNVTICAPPMMMMMPPPPPSLTNNNNA------------------------------------------ETSSNNILFLPFMD-NN----NNNPQE-------------------------------------------------------------------------------------D------------NNSSSS---------SIKSKIMLNPHYHRLLTAYLNCQK--IGAPP-E--------VVARLEEIC--ATSATMG-RS-SSSSGGG-----------IIGED-P--ALDQFMEAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTL------------------------------------APNSSHESALG------------------------------------------------------------------EAMDR--NGS-S-D-EE-VDV---NN-S-------------------FIDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLVDWWLRHI-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-P-H--------------------YYMD--NVLANH-FPMD-MTPS--------LL---------- [354] 'gi|33333531|gb|AAQ11882.1| knotted 1 [Hordeum vulgare]' ---------------------------------------------------------MDR-----------------------------------------------------------------------------------------SSFGNLAAGGG------GSSSSK------SSPSFLQLQPLSTTTV--AAGPGPMGGTYYGTP--------------------------------------------------L-----------A-LHQ-GAAAA---------------GSSQ-----SPYQ--F-------------------------HHHKSS----V----------------GEI------------SQAEAE---------AIKTKIMAHPQYTALLVAYLDCQK--VGAPP-D--------VLERLTAMA--AKLDAHT-PG-RL---H-------------EARD-P--ELDQFMEAYCNMLAKYREELTRP----IE----EAMEFLKRVEA--------------------------------------------QLDSITG------------------------------------GGH-------GSAPLSLA----------------------------------------------AG-----------K-YEG--VGS-S-E-DD-MDA---SG-R---ENEP-PE----------IDPRA-ED----------------------KDLKYQLL-----------KKYSGYLSSLRQEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MPFVMME-GFH-PQN---AA----A----------LYMD------GQFM-ADGM--Y--------RLGS-------- [349] 'gi|55669503|gb|AAV54619.1| homeobox transcription factor KN2 [Pinus taeda]' -----------------------------------------------------------------------------------------------------------------------------------------------------MEHLNAAAAQASSSLYGVSMSEYGDVGVSSMMALMTQHEPHESES--TMTTSMPSSFSSFHGHAECLLSAAMFQASQ-------------------------GDHKLKRQHGMD-QLVSEQAVMSDSSMPSVKTE---------------GCSSLRNQFEIRREQSGNCY-----ADQSSNA---PLVTSIASQAGGVAARMITSLE---ADS---P-HF---------------NEAD---------AIKSKILAHPQYPNLLGAYIDCQK--IGAPP-E--------VASRLDALS--HEYENQQ-HR-SSLS---------------IGMD-P--ELDQFMEAYCEMLTKYHEELTKP----FK----EAMSFLKKIEA--------------------------------------------QLNSLGK----------------------------------------------GTIRISPSAEND-------------------------------------------------------EKTEG--GAS-S-E-EV-EDG---SG-G---ETDF-QE----------VDHHAVED----------------------RELKDHLL-----------RKYSGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQLMAMD-GQS-PHG----A----T----------MYVE------RHLM-TEG---Y--------HLDC-------- [429] 'gi|42563111|ref|NP 177208.2| KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor [Arabidopsis thaliana] >gi|' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDR--MCGFRST-EDYSEKATLMM---------PSDYQSLICST---TGDNQ--RLF-------------------------GSDEL----ATALSS-------E---LLPRI-------------------------------------------R-----------------------------------------KAE------------DNFSLS---------VIKSKIASHPLYPRLLQTYIDCQK--VGAPM-E--------IACILEEIQ--RENHVYK-RD-VAPLS-------------CFGAD-P--ELDEFMETYCDILVKYKTDLARP----FD----EATTFINKIEM--------------------------------------------QLQNLCT------------------------------------GPASATALS----------------------------------------------------------------------DDG--AVS-S-D----EEL---RE-D---DDIA-AD---------DSQQRS-ND----------------------RDLKDQLL-----------RKFGSHISSLKLEFSKKKKK--GKLPREARQALLDWWNVHN-KWPYPT------------------EGDKISLAEETGLDQKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MPFDMMD-DSN-ET---------------------FFTE-------------------------------------- [310] 'gi|984046|emb|CAA57122.1| ATK1 [Arabidopsis thaliana] >gi|984048|emb|CAA57121.1| ATK1 [Arabidopsis thaliana]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDR--MCGFRST-EDYSEKATLMM---------PSDYQSLICST---TGDNQ--RLF-------------------------GSDEL----ATALSS-------E---LLPRI-------------------------------------------R-----------------------------------------KAE------------DNFSLS---------VIKSKIASHPLYPRLLQTYIDCQK--VGAPM-E--------IACILEEIQ--RENHVYK-RD-VAPLS-------------CFGAD-P--ELDEFMETYCDILVKYKTDLARP----FD----EATTFINKIEM--------------------------------------------QLQNLCT------------------------------------GPASATALS----------------------------------------------------------------------DDG--AVS-S-D----EEL---RE-D---DDIA-AD---------DSQQRS-ND----------------------RDLKDQLL-----------RKFGSHISSLKLEFSKKKKK--GKLPREARQALLDWWNVHN-KWPYPT------------------EGDKIALAEETGLDQKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MPFDMMD-DSN-ET---------------------FFTEE------------------------------------- [311] 'gi|7581979|emb|CAB88029.1| knotted1-like homeobox protein [Dendrobium grex Madame Thong-In]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDEMYSIPPDSTFAAADDLHGLIAASGYGAAAAAAAAEE---------EMKARIASHPRYPHLLEAYIDCQK--VGAPP-D--------IASLLEEIR--RENAGGE-RL-ASSSVI-------------LGSD-P--ELDEFMEMYCDVLVKYRRDLERP----FD----EATAFLNTMEV--------------------------------------------QLSDLCK----------------------------------------------PTCRAALGPY---------------------------------------------------------VSDEA--VGS-S-D----EEL---SG-G---EGEA-PE----------SHLKG-EE----------------------RDLKEKLL-----------RKYSGYLSSLKQEFSKKKKK--GKLPKEARQILFEWWTAHY-KWPYPT------------------EADKIALAEATGLDQKQINNWFINQRKRHWK-------PA--EN-------------------------------------------------------MHFSVMD-NSS-TSS--------------------LFADD------------------------------------- [286] 'gi|12325041|gb|AAG52468.1| homeotic protein (ATK1); 26548-32058 [Arabidopsis thaliana] >gi|25386225|pir||A96729 homeotic protei' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDR--MCGFRST-EDYSEKATLMM---------PSDYQSLICST---TGDNQ--RLF-------------------------GSDEL----ATALSS-------E---LLPRI-------------------------------------------R-----------------------------------------KAE------------DNFSLS---------VIKSKIASHPLYPRLLQTYIDCQK--VGAPM-E--------IACILEEIQ--RENHVYK-RD-VAPLS-------------CFGAD-P--ELDEFMETYCDILVKYKTDLARP----FD----EATTFINKIEM--------------------------------------------QLQNLCT------------------------------------GPASATALS---------------------------------------------------------------------ADDG--AVS-S-D----EEL---RE-D---DDIA-AD---------DSQQRS-ND----------------------RDLKDQLL-----------RKFGSHISSLKLEFSKKKKK--GKLPREARQALLDWWNVHN-KWPYPT------------------EGDKISLAEETGLDQKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MPFDMMD-DSN-ET---------------------FFTE-------------------------------------- [311] 'gi|3327269|dbj|BAA31698.1| PKn1 [Ipomoea nil]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDGMFGFHSTPDYGSRALMS--PENLMD-------------------------------------------------------CGYSYNGLISPSAPDRIPVFASDDPTA---------------TGSFPCSVVSEAASVAPDVY-----RRGGGGGR---------------------------REDAAGEKEDD------------DDHGIG---------LIKAKIASHPSYPKLLEAYIDCQK--VGAPP-E--------IASFLDEIR--RENDLFK-HD-SRVST-------------CFGDD-P--ELDIFMETYCDILVKYKSDLSRP----FD----EAKTFLNKIET--------------------------------------------QLSNLCK-------------------------------------------------------------------------------------------------------------------DDG--VVS-S-D--D-DEY---SG-G---EAEE-QD----------SAVKG-ED----------------------RELKSRLL-----------QKYGGHISSLKLEFSKKKKK--GKLPKDARQILLEWWKGHY-RWPYPT------------------EDDKISLAELTGLDQKQINNWFINQRKRHWK-------PS--EH-------------------------------------------------------MQLAVMD-NLA-GQ---------------------FFTQD------------------------------------- [333] 'gi|15236418|ref|NP 192555.1| KNAT1 (BREVIPEDICELLUS 1); transcription factor [Arabidopsis thaliana] >gi|4689449|gb|AAD27897.1|' --------------------------------------------------------------------------------------------------------------------------------------------------------------MEEYQHDNSTTPQRVSFLYSPISSSNKNDNTSDTNN--NNNNNNSSNYGPGYNNTNNNNHHHQHMLFP-------------------------HMSSLLPQTTENCFRSDHDQP-NNNNNPSVKSE---------------ASSSRINHYS--------------------------MLMRAIHNTQEA-NNN----------------NND------------NVSDVE---------AMKAKIIAHPHYSTLLQAYLDCQK--IGAPP-D--------VVDRITAAR--QDFEARQ-QR-STPSVSA------------SSRD-P--ELDQFMEAYCDMLVKYREELTRP----IQ----EAMEFIRRIES--------------------------------------------QLSMLCQ----------------------------------------------SPIHILNNPD---------------------------------------------------------GKSDN--MGS-S-DEEQ-ENN---SG-G---ETEL-PE----------IDPRA-ED----------------------RELKNHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKEARQKLLTWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLQ-HPH---HA----A----------LYMD------GHYM-GDGP--Y--------RLGP-------- [398] 'gi|19908861|gb|AAM03027.1| homeodomain protein KNAT1/BP [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------MEEYQHDNSSTPQRVSFLYSPISSSNKNDNTSDTNN--NNNNNNSSNYGPGYNNTNNNNHHHQHMLFP-------------------------HMSSLLPQTTENCFRSDHDQPNNNNNNPSVKSE---------------ASSSRINHYS--------------------------MLMRAIHNTQEANNNN----------------NND------------NVSDVE---------AMKAKIIAHPHYSTLLQAYLDCQK--IGAPP-D--------VVDRITAAR--QDFEARQ-QR-STPSVSA------------SSRD-P--ELDQFMEAYCDMLVKYREELTRP----IQ----EAMEFIRRIES--------------------------------------------QLSMLCQ----------------------------------------------SPIHILNNPD---------------------------------------------------------GKSDN--MGS-S-DEEQ-ENN---SG-G---ETEL-PE----------IDPRA-ED----------------------RELKNHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKEARQKLLTWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLQ-HPH---HA----A----------LYMD------GHYM-GDGP--Y--------RLGP-------- [400] 'gi|19908859|gb|AAM03026.1| homeodomain protein KNAT1/BP [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------MEEYQHDNSSTPQRVSFLYSPISSSNKNDNTSDTNN--NNNNNNSSNYGPGYNNTNNNNHHHQHMLFP-------------------------HMSSLLPQTTDNCFRSDHDQPNNNNNNPSVKSE---------------ASSSRINHYS--------------------------MLMRAIHNTQEANNNN----------------NND------------NVSDVE---------AMKAKIIAHPHYSTLLQAYLDCQK--IGAPP-D--------VVDRITAAR--QDFEARQ-QR-STPSVSA------------SSRD-P--ELDQFMEAYCDMLVKYREELTRP----IQ----EAMEFIRRIES--------------------------------------------QLSMLCQ----------------------------------------------SPIHILNNPD---------------------------------------------------------GKSDN--MGS-S-DEEQ-ENN---SG-G---ETEL-PE----------IDPRA-ED----------------------RELKNHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKEARQKLLTWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLQ-HPH---HA----A----------LYMD------GHYM-GDGP--Y--------RLGP-------- [400] 'gi|26023937|gb|AAN77690.1| KNOTTED1-like homeodomain protein 2 [Picea abies]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRPCQGANKFEPANAHIG--GG-----GAGHFVMEQFIPEQAVISDSSIS-------------------------SVKTEVCSGSG-----------GTGVPGQFELI---------------RRKEEGRCARAYAEPSFVVT-----P---------LVTSLPPQQQEARMVTSLAVDM---DSS---C-SCK------------PIEA-D---------AMKAKIIAHVHYPRLVAAYIDCQK--VGAPP-D--------VVSELDELS--QKCHAQQ-CV-ATIS---------------IGAD-P--ELDQFMEAYCEMFIKYQEELTKP----FK----EAMAFLKKIEN--------------------------------------------QLGALTK------------------------------------GTIRTSSLDQGD-----------------------------------------------------------------ERGDG--AAS-S-E--E-EDG---SG-G---EVEF-HE----------VDPHA-ED----------------------RELKDQLL-----------RKYSGYLSSLKQEFLKKKKK--GKLPKEARQKLLDWWTRNY-KWPYPS------------------ESQKIALAESTGLDQKQINNWFINQRKRHWK-------PS--EE-------------------------------------------------------MQFVVMD-SPN-PHN----A----A----------FFLE------GHLR-TDGTA-F--------SMDC-------- [383] 'gi|26023939|gb|AAN77691.1| KNOTTED1-like homeodomain protein 3 [Picea abies]' -----------------------------------------------------------------------------------------------------------------------------------------------------MEHLNTAAAQASSSLYGVGMAEYGDAGVSSMMALITQHEPHDSES--IMSTRMPSSFSSFHGHADCLLSAAMFQASQ-------------------------GDHKLKRQPGMD-QLVSEQAGMSDSSMPSVKTE---------------VGSGLRNQLEFHREQTGNGY-----TDQSSNTPVNPLVTSLASQARG-EAQMIPSWD---ANS---P-HFN------------VDNEEY---------AIKSKILAHPQYPSLLGAYIDCQK--IGAPP-E--------AVARLDALT--REYQNQQ-RR--TVS---------------IGMD-P--ELDQFMEAYCEILTKYHEELAKP----FK----EAMTFLMKIEA--------------------------------------------QFNSLGK----------------------------------------------GTIRISPPAEND-------------------------------------------------------KKTEG--GGS-S-E-EV-EDG---SG-G---ETDF-QE----------VDHHAVED----------------------RELKDHLL-----------RRYSGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWSLHD-KWSYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MHFMVMN-SHS-PHS----A----A----------LYVE------RHLM-TEG---Y--------HLDC-------- [433] 'gi|57116570|gb|AAW33773.1| STM1 protein [Streptocarpus dunnii]' ---------------------------------------------------------GSA-----------------------------------------------------------------------------------------GNVNMTSSFKGANS--YMGF-GDNVN----------------GLC--PMMMMMPANDP--------------------------------------------------NGDCSQPLFLPLPA-AN----QQGINR------------------NSSSAAACGGSMMP--------EHQSNTSTGYYFME---------G---------------------D------------GVAGGG---------SVKSKIMAHPHYPRLLAAYVNCQK--IGAPP-E--------VVAKLEEAC--ASTITIGGRN-ERS---------------CVGED-P--ALDQFMEAYCEMLTKYEQELSKP----FK----EAMLFLSRIEC--------------------------------------------QFKALTL------------------------------------SHSSDSGACGE------------------------------------------------------------------AVMER--NGS-S-E-EE-FDV---NN-S-------------------FIDPQA-ED----------------------RELKGQLL-----------RRYSGYLGNLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-ATH-P-H--------------------YYMD--NFIGTP-FPMD-ISPS--------FL---------- [356] 'gi|2935575|gb|AAC32818.1| KNOX class homeodomain protein [Oryza sativa]' ---------------------------------------------------------MDQ------------------------------------------------------------------------------------------SFGNL-GGGG-----AGGSGKA------AASSFLQL-PLSTAAA--AT-------AYYGTP--------------------------------------------------L-----------A-LHQ-AAAAA---------------GPSQYHGHGHPHHGGG-------------------------HHHSKHGGAGG----------------GEI------------SAAEAE---------SIKAKIMAHPQYSALLAAYLDCQK--VGAPP-E--------VLERLTATA--AKLDARP-PG-R----H-------------DARD-P--ELDQFMEAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAG------------------------------------GGHGGSGGGAGSARLLLA----------------------------------------------DG-----------K-SEC--VGS-S-E-DD-MDP---SG-R---ENEP-PE----------IDPRA-ED----------------------KELKFQLL-----------KKYSGYLSSLRQEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MPFVMME-GFH-PQN---AA----A----------LYMD------GPFM-ADGM--Y--------RLGS-------- [357] 'gi|4589880|dbj|BAA76903.1| homeobox 9 [Nicotiana tabacum]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEKMYE---------------FVSSSSDVYSVEDNLQPPYF-----GSPPAFCDGLAPMGFGSGNMSWACPETSAANLVVDKSGTSSSNLQL------------EDHPET---------DIRAKISSHPLYPKLLRTYIDCHK--VGAPSDE--------IVDMLDNINIVHENDLSRRSN-------------------RLSDD-S--ELDAFMETYCDVLAKFKSDLERP----FN----EATTFLNDIET--------------------------------------------QLTNLCA------------------------------------APATTISN---------------------------------------------------------------------ISDEG--AAG-TEEEEEVADT---SG-G---GGNT-------------NDMCR-SE----------------------NEIKDKLM-----------RKYSGYISSLKQEFSKKNKK--GKLPREARQILLNWWTTHY-KWPYPT------------------EGEKICLAESTGLDPKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MQYAVME-SIY-G----------------------HFSE-------------------------------------- [322] 'gi|8778590|gb|AAF79598.1| F28C11.2 [Arabidopsis thaliana]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNFHSA-GDYSDKSVLMMS--PESLMFPSDYQALLCSS---AGENRVSDVF-------------------------GSDELLSVAVSALSS-------EAASIAPEI-------------------------------------------R-----------------------------------------RND------------DNVSLT---------VIKAKIACHPSYPRLLQAYIDCQK--VGAPP-E--------IACLLEEIQ--RESDVYK-QE-VVPSS-------------CFGAD-P--ELDEFMETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT------------------------------------GVESARGVSGGMSPHGDKTISPLLTND--------------------------------------------------NGEDG--VIS-S-D----EEL---SG-G---DHEV-AE---------DGRQRC-ED----------------------RDLKDRLL-----------RKFGSRISTLKLEFSKKKKK--GKLPREARQALLDWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MPFAMMD-DSS-GS---------------------FFTEE------------------------------------- [344] 'gi|57116572|gb|AAW33774.1| STM1 protein [Streptocarpus rexii]' -------------------------------------------------------MEGSA-----------------------------------------------------------------------------------------GNMNMTSSFKGANS--YLGF-GDNVN----------------GFC--PMMMMMPANNP--------------------------------------------------NGDCSQPIFQPLPA-AN----QQGINR------------------NSSSAAACGGSMMP--------EHQSNTSTGYYFME---------G---------------------D------------GDAGGG---------SVKSKIMAHPHYPRLLAAYVNCQK--IGAPP-E--------VVAKLEEAC--ASTITIGGRN-ERS---------------CVGED-P--ALDQFMEAYCEMLTKYEQELSKP----FK----EAMLFLSRIEC--------------------------------------------QFKALTL------------------------------------SHSSDSGACGE------------------------------------------------------------------AVLER--NGS-S-E-EE-FDV---NN-S-------------------FIDPQA-ED----------------------RELKGQLL-----------RRYSGYLGNLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-ATH-P-H--------------------YYMD--NFMGTP-FPMD-ISPS--------FL---------- [358] 'gi|57116574|gb|AAW33775.1| STM1 protein [Streptocarpus saxorum]' -------------------------------------------------------MEGSA-----------------------------------------------------------------------------------------GNLNL-NSYRGANS--FMGF-GDNVN----------------GFS--PMMMMMHANDP--------------------------------------------------NGDCSQPIFLPLPA-AN----HQGINR------------------NTGG----GGGLTP--------EHHSNMSTGYYFME---------G---------------------D------------GDAGGS---------SVKSKIIAHPHYPRLLAAYVSCQK--IGAPP-E--------VVAKLEEVC--ASATSTGCRN-ERS---------------CVGED-P--ALDQFMEAYCGMLTKYEQELSKP----FK----DAMLFFSRFEC--------------------------------------------QFKALTL------------------------------------SHSADSGACDE------------------------------------------------------------------AVLEQ--NGS-S-E-EE-FDV---NN-S-------------------FIDPQA-ED----------------------HELKGQLL-----------RKYSGYLGNLKQEFMKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKLALAESTGLEQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-P-H--------------------YYMD--NIMATP-FPMD-ISSS--------FL---------- [353] 'gi|55669505|gb|AAV54620.1| homeobox transcription factor KN3 [Pinus taeda]' MEHMNTTAQSSSSLYGVHMVEYGGDVGVGSMMALMTEHHPESESIMTSIPIPSSYSSYSH-----------------------------------------------------------------------------------------GHGHGHGHGHGHGQSECLLSAAAMFQTSRPCQGSNKFEPANAHIG--GGGGGGRGAGHFVMEQFIPEQAVISDSSIS-------------------------SVKTEVCSGSG----------------GQFELI---------------RRKEEGRCGRAYAEPSFVVT-----P---------LVTSLPPQQQEGRMVTSLAVDM---DSS---C-SCK------------PNEA-D---------AMRAKIIAHVHYPRLVAAYIDCQK--VGAPP-E--------VVLELDDLS--HKCQTQH-CV-PTIS---------------VGAD-P--ELDQFMEAYCEMFIKYQEELTKP----FK----EAMAFLKKIEN--------------------------------------------QLGTLTK------------------------------------GTIRTSSLDQGD-----------------------------------------------------------------ERGDG--AAS-S-E--E-EDG---SG-G---EVEF-HE----------VDPHA-ED----------------------RELKDQLL-----------RKYSGYLSSLKQEFLKKKKK--GKLPKEARQKLLDWWTRNY-KWPYPS------------------ESQKIALAESTGLDQKQINNWFINQRKRHWK-------PS--EE-------------------------------------------------------MQFVVMD-SPN-PHN----A----A----------FFLE------GHLR-TDGTA-F--------SMDC-------- [470] 'gi|4589882|dbj|BAA76904.1| homeobox 20 [Nicotiana tabacum]' ---------------------------------------------------------MEN--------------------------------------------------------------------------------------------NYNQLGENSSQRGNNFLYGGIPLLSSPN-SSYLWKNKW---------------------RRRRSDCYDQS---------------------------------------Q-----------AVVHPI-VKTE---------------GGSSTSHHHHTFQYPS--------------------IIRSGYHHQTVQNHHE----------------SES------------SGSEVD---------ALKAKIIAHPQCSNLLDAYMDCQK--VGAPP-E--------VVARLSAVR--QEFEVRQ-RD-SSTDRD-------------VSKD-P--ELDQFMEAYYDMLVKYREELTRP----LH----EAMDFMRKIET--------------------------------------------QLNML---------------------------------------------------------E---------------------------------------------------------DKCEG--VGS-S-E-EE-QDN---SG-G---ETEI-PE----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLSSLKQELSKKKKK--GKLPKDARQKLLSWWELHY-KWPYPS------------------ESEKVALAETTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQN---AA----A----------LYME------GHYM-GEGP--F--------RLGQ-------- [356] 'gi|11463937|dbj|BAB18582.1| CRKNOX1 [Ceratopteris richardii]' -------------------MDYDGHMRASMSSNICNVMNYAEGQVGSMVALMTTDHGTEG-----------------------------------------------------------------------------------------EQNRNHNPQHTSQHEQPQNQSSHSRNDRRQQLRSLNQTTMSSSLP--TSSLTYYNAAMVEPYLQSALLQSTHTFNQS-------------------------NNVETHPHIISALDQLETSVVVSAEEEKPHIGI---------------RPKPVQSAQFPSSIDCNYVL-----SSSGQSVLVSPGANSTTHESQAAVASV-SRDMENAHA---------------------SADRSD---------VIRSKIMSHPTYPRLVMAYVNCHK--IGAPP-E--------VATSLEEIS--KKYQSFR-SS-SPAP---------------TGAD-P--ELDNFMETYCNVLQKYHDELMQP----YK----EAMTFFRKIEL--------------------------------------------QLNALSK------------------------------------GTVRLCHTGDDKADANCNSGQ--------------------------------------------------------HGLIS--GGSSGEEDAEEGDV---SC-G---EVDFHEE---------MIDPLA-DD----------------------QKVKEQLL-----------RKYSGYIYKLKQEFLKKKKK--GKLPKNAREKLLDWWNQHY-KWPYPS------------------EAEKAALAETTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQYVMVD-SPT-AHHHHHVL----HGH--------AHLTPHPLAPYAVMETMDAAAA--------AAAAVTMLPSLQ [512] 'gi|9295701|gb|AAF87007.1| F26F24.25 [Arabidopsis thaliana] >gi|15991300|dbj|BAB69678.1| homeodomain transcription factor KNAT6' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNFHSA-GDYSDKSVLMMS--PESLMFPSDYQALLCSS---AGENRVSDVF-------------------------GSDELLSVAVSALSS-------EAASIAPEI-------------------------------------------R-----------------------------------------RND------------DNVSLT---------VIKAKIACHPSYPRLLQAYIDCQK--VGAPP-E--------IACLLEEIQ--RESDVYK-QE-VVPSS-------------CFGAD-P--ELDEFMETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT------------------------------------GVESARGVS----------------------------------------------------------------------EDG--VIS-S-D----EEL---SG-G---DHEV-AE---------DGRQRC-ED----------------------RDLKDRLL-----------RKFGSRISTLKLEFSKKKKK--GKLPREARQALLDWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MPFAMMD-DSS-GS---------------------FFTEE------------------------------------- [324] 'gi|42570557|ref|NP 850951.2| KNAT6; DNA binding / transcription factor [Arabidopsis thaliana] >gi|28393913|gb|AAO42364.1| putat' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDGMYNFHSA-GDYSDKSVLMMS--PESLMFPSDYQALLCSS---AGENRVSDVF-------------------------GSDELLSVAVSALSS-------EAASIAPEI-------------------------------------------R-----------------------------------------RND------------DNVSLT---------VIKAKIACHPSYPRLLQAYIDCQK--VGAPP-E--------IACLLEEIQ--RESDVYK-QE-VVPSS-------------CFGAD-P--ELDEFMETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT------------------------------------GVESARGVS----------------------------------------------------------------------EDG--VIS-S-D----EEL---SG-G---DHEV-AE---------DGRQRC-ED----------------------RDLKDRLL-----------RKFGSRISTLKLEFSKKKKK--GKLPREARQALLDWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MPFAMMD-DSS-GS---------------------FFTEE------------------------------------- [327] 'gi|50918411|ref|XP 469602.1| knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|41469271|gb|AAS07153.1' ---------------------------------------------------------MEE-----------------------------------------------------------------------------------------LEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGGAR--QAVAPATRDGGDGGGR-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AGVLDD---------PVKARIVSHPRYHRLLAAFLDCHK--VGCPA-E--------AAEEIAAAA--RVREARQ-RA-AAAASRMP----------PAPED-P--ELDQFMEDYCKLLVECKEELSRP----LQ----EAEEFLRTVES----------------------------------------------ELNSI------------------------------------NSGPPLTALIS------------------------------------------------------------------ESKAG--LDS-S-D-DD-EHE---DG-S---GMEM-MEAAEDED-LGIIDPRS-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPNPS------------------EMEKIALAESTGLEQKQINNCFINQRKRHWK-------PT--EE-------------------------------------------------------MEFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPASAVY--------TARPDHGVWRA- [365] 'gi|33333546|gb|AAQ11889.1| knotted 2 [Nicotiana tabacum]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLSSPN-SSIYGRTSG---------------------GGGGGDCYDQS---------------------------------------Q-----------AVVHPI-VKTE---------------GGSSISHHHHTFQYPS--------------------IIRSGYHHQTVQNHHE----------------SES------------SGSEVD---------ALKAKIIAHPQCSNLLDAYMDCQK--VGAPP-E--------VVARLSAVR--QEFEVRQ-RD-SSTDRD-------------VSKD-P--ELDQFMEAYYDMLVKYREELTRP----LH----EAMDFMRKIET--------------------------------------------QLNMLGN------------------------------------------G----PVRIFN-SE---------------------------------------------------------DKCEG--VGS-S-E-EE-QDN---SG-G---ETEI-PE----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLSSLKQELSKKKKK--GKLPKDARQKLLSWWELHY-KWPYPS------------------ESEKVALAETTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMV-GLH-PQN---AA----A----------LYME------GHYM-GEGP--F--------RLGQ-------- [341] 'gi|85543296|gb|ABC71528.1| KNOTTED1 homeodomain protein [Setaria italica]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-VGASG---GHGHV----Q-------------------------DHLHHHHPWGSS-LSAVVAPPPQ-----TPPSA---------------G-------LPLTLNTAA--------TGNSGGAGGNPVLQLANGGGLLDAC---VKAK---EPS---S-SSP------------YAGDVD---------AIRAKIISHPHYYSLLAAYLECQK--VGAPP-E--------VSARLTAMA--QELEARQ-RT-ALGGLG-------------AATE-P--ELDQFMEAYHEMLVKFREELTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSI------------------------------------SGRSL------------------------------------------------------------------------RNILS--SGS-S-E-ED-QEG---SG-G---ETEI-PE----------VDAHG-ED----------------------QELKHHLL-----------KKYSGYLSSLKQELSKKKKK--GKLPKEARQHLLSWRDLHY-KWPYPS------------------ETQKVALAESTGLDLKQIINWFINQRKRHWK-------PS--EE-------------------------------------------------------MHHLMMD-GYH-TTG---A----------------FYMD------GHFINDSG------------------------ [344] 'gi|56236458|gb|AAV84585.1| knotted-like homeobox protein [Populus tomentosa]' ----------------------------------------------------------ME--------------------------------------------------------------------------------------------DYNQMSENTTPRGNFLYAS---QLLAPN-SSPYGRTSS---------------------GSTVSNQQTQMPLNP-------------------------FHLQSNDQCFQ-----------SDTHPI-VKTE---------------AST---SHAQKFHYP----------------------LLRGY--QTINQQQQ----------------GSE------------SSSEVE---------AIKAKIIAHPQYSNLLEAYMDCQK--VGAPP-E--------VVARLAAAR--QEFESRQ-RS-FITSRD-------------NSKD-P--ELDQFMEAYCDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMICH------------------------------------------G----PLRIFN-SD---------------------------------------------------------DKSEG--VGS-S-E-DD-QDN---SG-G---ETEL-PE----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLGSLKQELSKKKKK--GKLPKEARQKLLSWWELHY-KWPYPS------------------ETEKVALAETTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQN----A----A----------LYMD------GHYM-GDGH--Y--------RLGP-------- [368] 'gi|33333548|gb|AAQ11890.1| knotted 3 [Nicotiana tabacum]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIPLLASPN-SSIYGRSS-----------------------GGGGDCYDQS---------------------------------------Q-----------AVVHPI-VKTE---------------GGS--TSHHHTFQYPS--------------------IIRSGYHHLTVQNHHE----------------SES------------SGSEVD---------ALKAKIIAHPQCSNLLDAYMDCQK--VGAPP-E--------VVARLSAVR--QEFEVRQ-RD-SSTDRN-------------IAKD-P--ELDQFMEAYYDMLVKYREELTRP----LH----EAMDFMRKIET--------------------------------------------QLNMLGN------------------------------------------G----PVRIFN-SE---------------------------------------------------------DNCEG--VGS-S-E-EE-QDN---SG-G---ETEI-PQ----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLSSLKQELSKKKKK--GKLPKDARQKLLSWWELHY-KWPYPS------------------ESEKVALAETTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQN---AA----A----------LYME------GHYM-GEGP--F--------RLGQ-------- [340] 'gi|3023974|sp|Q41330|KN1 LYCES Homeotic protein knotted-1 (TKN1) >gi|1256575|gb|AAC49251.1| Knotted 1 (TKn1) >gi|1588258|prf||2' ---------------------------------------------------------MEN-----------------------------------------------------------------------------------------NNYNNHVSGENSGGQRGHFFYGGNQVLGGA--APIYGR---------------------------GGDCYDPM--------------------------------------------------------I-VKTE---------------GGGSTSHHNHTFHYPS--------------------IIRN-HHHDSTETSGG----------------GAG------------AGEVIE---------ALKAKIIAHPQCSNLLDAYMDCQK--VGAPP-E--------VAARLSAVR--QEFEARQ-RR-SLTDRD-------------VSKD-P--ELDQFMEAYYDMLVKYREELTRP----LQ----EAMEFMQKIEA--------------------------------------------QLNMLGN------------------------------------------A----PVRIFN-SE---------------------------------------------------------DKCEG--VGS-S-E-ED-QDN---SG-G---ETEL-PE----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLSSLKQELSKKKKK--GKLPKDARQKLITWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQS---AA----A----------LYME------GHYM-GEGP--F--------RLGQ-------- [355] 'gi|55276122|gb|AAV49802.1| homeobox transcription factor KN3 [Populus balsamifera subsp. trichocarpa x Populus deltoides]' ----------------------------------------------------------ME--------------------------------------------------------------------------------------------DYNQMSENTTPRGNFLYAS---QLLAPN-SSPYGRTSS---------------------GSTVSNQQTQMPLNP-------------------------FHLQSNDQCFQ-----------SDTHPI-VKTE---------------AST---SHAQKFHYP----------------------LLRGY--QTINQQQQ----------------GSE------------SSSEVE---------AIKAKIIAHPQYSNLMEAYMDCQK--VGAPP-E--------VVARLAAAR--QEFESRQ-RS-FITSRD-------------NSKD-P--ELDQFMEAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMICH------------------------------------------G----PLRIFN-SD---------------------------------------------------------DKSEG--VGS-S-E-DD-QDN---SG-G---ETEL-PE----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLGSLKQELSKKKKK--GKLPKEARQKLLSWWELHY-KWPYPS------------------ETEKVALAETTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQN----A----A----------LYMD------GHSM-GDGH--Y--------RLGP-------- [368] 'gi|14456343|gb|AAK62559.1| class 1 KNOTTED1-like protein MKN4 [Physcomitrella patens]' ------------------------------------------------------------------------------------------------------------------------------------------------------MNRDMVGIVSSASARLEENPRLESYIASTGELAGWVEKSASVEA--TRSSLQLSQSQAFFEQYSTQYPQSDISSSSQADISAHDYLNIFKGTHAQAKADMKPRITQFMIPVQNQLEAGSYLLPHMAHDDSNNFS---------------TSSNIGRATQSLCTMHQDME-----TLRQVPKSNDLLIAITASAAAAVNQERGSGSETGQ--------------HDRDDDEKNKATDRGKLPENEEEQLLRDAIVDHPLYPELVVAHISIFK--IGAPK-G--------LLIKLDEME--KKFQRFQYGE----------SSWNVLHVTKFGQD-P--SLDFFMRSYIDLLTKFREDLENP----YN----KFAQYKDKVTK--------------------------------------------DLEDLCG--------------------------------------------------------------------------------------------------------HYIETTPDEEDNFGSDIGTKDM-SQDLNDLEILGEENLMYTADIDES--------IVIDPDA-AD----------------------EELKKMLR-----------LKYGKHIAGLKAEFNRVRKK--GKLPTNARQILKDWFSRHS-YWPYPS------------------EMEKAYLQRLCGLNLKQINNWFINERKRHWSCKGKCMYPN-----------------------------------------------------------TKFYPRDGHVDPNNHGEGYLE-----------------------------Q-------------------------- [488] 'gi|34896868|ref|NP 909778.1| putative knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|31745219|gb|A' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFASLAGGGSSSTTARLPELIPPENPDRISPPPL---------------LYQLLAGSASSARH--GHGH-----HHGGGGG-AAAAAVQGLQVS--------------------------------------PAGAEA---------AMKAEIMSHPQYSALLAAYLGCKK--VGAPP-D--------VLTKLTAVP--AAQQQLDAADGHPRRRHEP----------RRDDDVPDHQLDQFMDAYCSMLTRYREELERP----IL----EAAEFFSLIRS--------------------------------------------LVNS---------------------------------------------------------------------------------------------------------------------NCEG--TGS-S-E-EE-QDT---SC-P---EAE-------------EIDP---SD----------------------KQLKHQLL-----------MKYGGSLGDLRQAFSKRTKK--GKLPKEARLKLLHWWELHYDKWPYPS------------------EVEKMTLAQTTGLDQKQISNWFINQRKRHWK-------PTPVAG-------------------------------------------------------MTFPTVE-----AAGGGFRH----SGHDGGLAAAAAAAALPLYMGSWPFVVDGMYRLGS------------------ [353] gi|1814234|gb|AAB41849.1|_POTH1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDDEMYGFHSTRDDYADKA--LMS--PENLMMQTEYN-NFHNYTNSSILTSNPMMF-------------------------GSDDI-QLSSEQTNSFSTMTLQNNDNIYQIRSG---------------NCGGGSGSGGSSKD----------------------------------------------HNDNNNNNEDY------------DEDGSN---------VIKAKIVSHPYYPKLLNAYIDCQK--VGAPA-G--------IVNLLEEIR--QQTDFRK-PN-ATSI--------------CIGAD-P--ELDEFMETYCDILLKYKSDLSRP----FD----EATTFLNKIEM--------------------------------------------QLGNLCK-------------------------------------------------------------------------------------------------------------------DDG--GVS-S-D----EEL---SC-G---EADA--------------SMRS-ED----------------------NELKDRLL-----------RKFGSHLSSLKLEFSKKKKK--GKLPKEARQMLLAWWDDHF-RWPYPT------------------EADKNSLAESTGLDPKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MQLAVMD-NLS-SQ---------------------FFSSDD------------------------------------ [345] 'gi|22329749|ref|NP 173752.2| KNAT6; DNA binding / transcription factor [Arabidopsis thaliana] >gi|15991302|dbj|BAB69679.1| home' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNFHSA-GDYSDKSVLMMS--PESLMFPSDYQALLCSS---AGENRVSDVF-------------------------GSDELLSVAVSALSS-------EAASIAPEI-------------------------------------------R-----------------------------------------RND------------DNVSLT---------VIKAKIACHPSYPRLLQAYIDCQKKQVGAPP-E--------IACLLEEIQ--RESDVYK-QE-VVPSS-------------CFGAD-P--ELDEFMETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT------------------------------------GVESARGVS----------------------------------------------------------------------EDG--VIS-S-D----EEL---SG-G---DHEV-AE---------DGRQRC-ED----------------------RDLKDRLL-----------RKFGSRISTLKLEFSKKKKK--GKLPREARQALLDWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MPFAMMD-DSS-GS---------------------FFTEE------------------------------------- [326] 'gi|4098242|gb|AAD00252.1| knotted 3 protein [Lycopersicon esculentum]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDDEIMYGFNSTRDDYADKA--LMS--PENLMMQTEYN-NFHNYTNSSIMF-------------------------------GSDPI-QLSSEQTLQ------------NNIYRG---------------NCCGGSGSGGD-------------------------------------------------------NNNNN------------DEDGSN---------IIKAKILSHPYYPKLLNAYIDCQK--VGAPA-S--------IVNLLEEIR--QQNDFRK-PN-ATCL--------------CIGAD-P--ELDEFMETYCDILLKYKSDLSRP----FD----EATTFLNNIEM--------------------------------------------QLGNLCK-------------------------------------------------------------------------------------------------------------------DDD---EE-E-E----EEL---SC-G---DASS-------------SMRRS-ED----------------------NELKDRLL-----------RKFGSHLSSLKLEFSKKKKK--GKLPKEAREMLLAWWYDHF-RWPYST------------------EADKNSLAESTGLDPKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MQLAVMD-NLS-AQ---------------------FFSSDVD----------------------------------- [320] 'gi|55669507|gb|AAV54621.1| homeobox transcription factor KN4 [Picea mariana]' MEDMNMNIGGAATFYGVNMNEY-GDTGVGSMMALMTEQEPGNESIMSTMTMTIPSSAFSS-----------------------------------------------------------------------------------------Y--------------------------SHAGQVEGLLSAAAATMF--NQGGHHHHQKHLVGGHFPPEQLVMNEQAAV-------------------------ISDSSLSSVKT-----------EVCSNQLEFHR---------------KTSGGGRSCCPQPSLVVRAP-----Q---------QQQQHHHHQEASRMVTSLEVDI---DSA---C-SSN------------PNDSID---------TLKTKIACHPHYPQLLAAYMDCQK--IGAPP-E--------VVTVLDEIS--QENQLGR-HL-ATMD---------------IGVD-P--ELDQFMEAYCQMLIKYHLELSKP----FK----EARTFLNKMET--------------------------------------------QLNCLSK------------------------------------GAIRSFPSGYCD-----------------------------------------------------------------EREDG---GG-S-S--E-EEF---SC-G---EIEV-HE----------VDPRA-ED----------------------RELKDQLL-----------RKYSGYFSSLKQEFLKKKKK--GKLPKEARQKLLEWWNVHY-KWPYPS------------------ETDKVSLAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-SLN-PHG----A----S----------FYMD------G--------------------ADC-------- [438] 'gi|28564574|dbj|BAC57683.1| KNOX class homeodomain protein [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------MDQ------------------------------------------------------------------------------------------SFGNLGGGGG-----AGGSGKA------AASSFLQL-PLSTAAA--AT-------AYYGTP--------------------------------------------------L-----------A-LHQ-AAAAA---------------GPSQYHGHGHPHHGGG-------------------------HHHSKHGGAGG----------------GEI------------SAAEAE---------SIKAKIMAHPQYSALLAAYLDCQK--VGAPP-E--------VLERLTATA--AKLDARP-PG-R----H-------------DARD-P--ELDQFMEAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAG------------------------------------GAH---GGGAGSARLLLAGKSTNHPSPSSCSRLRFYFYLHTCSFCFFSSAAAAAADDDDLVVGGDGGGGGGGGLPHCK-SEC--VGS-S-E-DD-MDP---SG-R---ENEP-PE----------IDPRA-ED----------------------KELKFQLL-----------KKYSGYLSSLRQEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MPFVMME-GFH-PQN---AA----A----------LYMD------GPFM-ADGM--Y--------RLGS-------- [412] 'gi|60476416|gb|AAX21347.1| homeobox knotted-1-like protein KNOX3 [Lotus corniculatus var. japonicus]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKAKIVSHPQYPRLLQAYIECQK--VGAPP-E--------IARLLEEIR--RENDLCK-RD-VVST--------------RFGAD-P--ELDEFMESYCDMLVKYKSDLARP----FD----EASNFLNKIEM--------------------------------------------QLSNLCT------------------------------------GASVPT-----------------------------------------------------------------------LSDEG--GVS-S-D----EEF---ST-G---DGDA-QD---------GQQLRG-ED----------------------RELKDRLL-----------RKFGSHIGTLKLEFSKKKKK--GKLPKEARQTLLQWWNVHY-KWPYPT------------------ESDKIELAKATGLDQKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MQS-------------------------------------------------------------------------- [227] 'gi|63168778|gb|AAY34562.1| shoot meristemless-like protein [Eschscholzia californica subsp. californica]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTR--VGAPP-E--------VVAKLEEAN--ATGEAMA-RT-GSGTG-------------CIGED-P--ALDQFMEAYCEMLTKYQQELTKP----FE----EAMMFLSRIEC--------------------------------------------QFKALTV------------------------------------SDSVGG-----------------------------------------------------------------------EAVNR--NGS-S-D-ED-IDA---ND-N-------------------YIDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFLKKRKK--GKLPKEARQQLLDWWSRHY-KWPYPS------------------ESQKIALAESTGLDQKQINNWFINQRKRHWK-------PS--EE-------------------------------------------------------MQFVVMD-SAH-Q-H--------------------YYIE--NGMGNSRFPMD-CTP---------ML---------- [233] 'gi|4589884|dbj|BAA76905.1| homeobox 22 [Nicotiana tabacum]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDDEIYGFHST-SEYADKA--LMS--PENLMMQTEYNMTYHNY---NTLSTPPMMF-------------------------GSDDV-QLSSEAANS-------ENNNIHHQIRG---------------SC----------------------------------------------------------------SRRDD------------TEDASN---------IIKAKVVSHPFYPKFVRAYIDCQK--VGAPP-E--------IATVLEEIR--QQNDFRK-PN-ATSI--------------CIGAD-P--ELDEFMETYCDILVKYKSDLSRP----FD----EATTFLSKIEL--------------------------------------------QLSNLCK-------------------------------------------------------------------------------------------------------------------DDG--GVS-S-D----EEL---SC-G---EVEG-QD----------ASQRS-ED----------------------NELKDRLL-----------RKFGSHLSTLKLEFSKKKKK--GKLPKEARQMLLAWWNDHY-RWPYPT------------------EADKNSLAESTGLDPKQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MQLAVMD-NLS-GQ---------------------FFSDD------------------------------------- [319] 'gi|5103723|dbj|BAA79223.1| knotted1-type homeobox protein OSH3 [Oryza sativa]' ---------------------------------------------------------MEE-----------------------------------------------------------------------------------------LEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGGAR--QDCC-----TGDAGRRRRR--------------------------------------------------------------------------------------------------------------------------------------------------------RPR------------RGVLDD---------PVKARIVSHPRYHRLLAAFLDCHK--VGCPA-E--------AAEEIAAAA--RVREARQ-RA-AAAASRMP----------PAPED-P--ELKLVTEDYCKLLVECKEELSRP----LQ----EAEEFLRTVES--------------------------------------------ELELNSI------------------------------------NSGPPLTALIS------------------------------------------------------------------ESKAG--LDS-S-D-DD-EHE---DG-S---GMEM-MEAAEDED-LGIIDPRS-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPNPS------------------EMEKIALAESTGLEQKQINNCFINQRKRHWK-------PT--EE-------------------------------------------------------MEFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPASAVY--------TARPDHGVWRA- [367] 'gi|3327273|dbj|BAA31700.1| short product from PKn2 alternative splicing [Ipomoea nil]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDETTYGFPSTSCDYADKA--LMSPDNNNLMMMDYPYAYNYNYNYHPGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVSS------------CLGAD-P--ELDEFMETYYDMLVKYKSDLSKP----FH----EATTFLNTIET--------------------------------------------QLSNLCK------------------------------------------------------------------------------------------------------------------DESG--AVS-S-D----EED---SG-G---ETDIQQE----------SITKT-EE----------------------RQLKNTLL-----------RKYGSHLSSLKLEFSKKKKK--GKLPKEARQTLLDWWSDHY-KWPYPT------------------EADKIALAESTGLDQKQINNWFINQRKRHWK-------PS--ES-------------------------------------------------------MQLAVME-NLT-GQ---------------------FFSSDDS----------------------------------- [237] 'gi|58011287|gb|AAW62518.1| KNOTTED1-like protein [Selaginella kraussiana]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSAA---------------ASSSSKFTAPASTMDEWYML-----SSYQSLIDANEGLEHAAGALEHHQQQQSSSSKQKSS----------------------LQLSEK---------EMKAAISGHPQYLELIKAHMSIKK--VGASS-Q--------KVAEINEVI--RMHQDSQPSS----------------VHTNIGAN-P--ELDQFMVAYCDVLNMYENQLNKA----FT----GAIEYCKQQEQ--------------------------------------------ELKLVSV------------------------------------SDEPIDALSSVE------------------LDD--------------------------------------------DVEDD-----------EEAES---DDVA---ADGG------------DIDPLI-GD----------------------KEIKRALM-----------KKYGGYLGGLTQEYLKKKKK--SKLPSAATKTLRDWWFQHL-EHPYPS------------------EAQKATLAATTKLDPKQINNWFINQRKRHWD-------PS--AA-------------------------------------------------------AASARGE-SLQ-QQGSQDGD--------------------------------------------------------- [315] 'gi|50917693|ref|XP 469243.1| putative KNOX class homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|40538948|gb|A' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQLHLLLASGGGSKASTTITPFCLARDHASTSSPSPA---------------AVAAPAPPPEATSGSEQSIH-----GSGTG-----------------------------------------------------LQSSEA---------MIKAKIMSHPLYPSLLRAFVDCKK--VGAPP-E--------VVGRLSSLA--VVTDVPQYSG------------DRCLPAQQPAAD-P--ELDQFMETYCYMLTRYGQELARP----IQ----EAEEFFRGIEE--------------------------------------------QIDSLAL------------------------------------DE----------------------------------------------------------------------------------DVSYDYE----DEV---AG-GLPEKSAAFGE-------------NE-VT----------------------TTTRRHLM-----------NKYSGYLNSLWTEISNKKKNSTGHLPRDARHKLLQWWHLHY-RWPYPS------------------EAEKAALAESTGLDKKQVTNWFINQRKRHWK-------PKPAAA-----------------------------------------------------MDAGFLQMH-----PRYGASSSSSPAAA---------LRVEDGGGRRSAYHPRGGP----------------------- [337] 'gi|60100884|gb|AAK61308.2| class 1 KNOTTED1-like protein MKN2 [Physcomitrella patens]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA---------------SEGSINRDTEKF-----QQE-----LAYKCPRSSDLLLAITTSANTAV-REHGSSAERRRRGNSGLFGNMSLLTEDEDDAPDAQDHEFEDNPQSEQDLELRAAIIDHPFYPEMVLAHVRVFK--IGAPG-R--------LRRKLDELA--KKFQRFQ??D----------------HTSKIGSD-P--ELDHF?RSYVGVLTKFAEDLEEP----FN----KFIQFTDNTSK--------------------------------------------ALEEICG--------------------------------------------------------------------------------------------------------HYVDTTPDE-DNCGFDIGPLEYGAQEGDDLDTLGDENVMYPLDIDES--------VIVDPMA-SD----------------------EDIKKALR-----------KKYGRHIGELKAEFNRVRKK--GKLPTSARTILKDWFNRHS-HWPYPS------------------EMEKQYLQRICGLNLKQINNWFINERKRHWSCEGKCMHPN-----------------------------------------------------------AKFYGTS-----NGQCRGHLE?EQSNRLQ?SSEETIYVKCSHAALIFEVSM-------------------------- [384] 'gi|60476414|gb|AAX21346.1| homeobox knotted-1-like protein KNOX2 [Lotus corniculatus var. japonicus]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDCQK--IGAPP-E--------VVARLVAAR--QEFEARR-RS-SVSSRE-------------NSKD-P--ELDQFMEAYYDMLVKYREELTRP----IQ----EAMGFMRRIET--------------------------------------------QLNMLCS------------------------------------------G----PVRIFN--D---------------------------------------------------------DKCEG--VGS-S-E-ED-QDN---SG-G---ETEL-PE----------IDPRA-ED----------------------RELKTHLL-----------KKYSGYLSSLKQELSEKKKK--GKLPKDARQKLLNWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQN----A----T----------LYMD------GHYMAADGH--Y--------RLGP-------- [243] 'gi|40218227|gb|AAR83015.1| putative Kn1-like homeobox protein [Populus alba x Populus tremula]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D-P--ELDQFMGAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMICH------------------------------------------G----PLRIFN-SD---------------------------------------------------------DKSEG--VGS-S-E-DD-QDN---SG-G---ETEL-PE----------IDPRA-ED----------------------RELKNHLL-----------RKYSGYLGSLKQELSKKKKK--GKLPKEARQKLLSWWELHY-KWPYPS------------------ETEKVALAETTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFMVMD-GLH-PQN-------------------------------------------------------------- [186] 'gi|33333535|gb|AAQ11884.1| knotted 4 [Hordeum vulgare]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--AGS-S-E-DD-LDA---SC-V---E-----E----------IDPSA-ED----------------------KELKHQLL-----------RKYGGYVGSLRQEFCKRRKK--GKLPKEARQKLLHWWELHS-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWK-------PAP-ED-------------------------------------------------------MTLL-RD-GRW-RGR---EL----P----------LCPA------GPGD-V-------------------------- [136] 'gi|30348875|gb|AAP31414.1| knotted1-like homeodomain protein liguleless3 [Zea mays]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDM--MGS-S-E----DEQ---CS-G---DTDV-PD-----MG-QEHSSHL-GD----------------------HELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARTVLLEWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MRFALME-GVA-GG--SSGTT--------------LYFDTGTIGP-------------------------------- [146] 'gi|62530887|gb|AAX85665.1| transcription factor DANDEKNOX1 [Taraxacum officinale]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DQFMEAYCEMLIKYEQELSKP----FK----EAMLFLSRIES--------------------------------------------QFKAISF------------------------------------SPSDSGCG--E------------------------------------------------------------------GGMDR--NGS-S-E-ED-LDVDVNNN-N-------------------LVDPQA-EE----------------------SELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------EAQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-A-------------------------------------------------------------------- [175] 'gi|30348870|gb|AAP31412.1| knotted1-like homeodomain protein liguleless4b [Zea mays]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DEM--VES-S-E----DEP---CS-G---DTDATTD-----PG-QEHSSRL-AD----------------------RELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MRFALME-GGV-SGS-SSGTT--------------LYFDTGTIGP-------------------------------- [148] 'gi|6016227|sp|P56668|KNX11 MAIZE Homeobox protein knotted-1-like 11' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AD----------------------RELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAATGLDPKQINNWFINQRKRHWK-------PS---------------------------------------------------------------------------------------------------------------------------------------- [88] 'gi|4887614|dbj|BAA77820.1| homeobox gene [Oryza sativa (japonica cultivar-group)]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDQ---CS-G---ETDM-LD-----IG-QEQSSRL-AD----------------------HELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALLEWWNTHY-RWPYPT------------------EEDKLRLAARTGLDPKQINNWFINQRKRHWK-------PS--DG-------------------------------------------------------MRFALME-GVA-GG--SSGTT--------------LYFDTGTIGP-------------------------------- [138] 'gi|20530672|gb|AAM27190.1| knotted1-like homeodomain protein liguleless4a [Zea mays]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DEM--VGS-SEE----DEA---CSGG---DTEA-TE-----PGQQEHSSRL-AD----------------------RELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAATGLDPKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MRFALME-GVT-GGGPSSGTT--------------LYFDTGTIGP-------------------------------- [151] gi|6016228|sp|P56669|HLG3_MAIZE_Homeobox_protein_liguleless_3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARTVLLEWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWK-------PS---------------------------------------------------------------------------------------------------------------------------------------- [85] 'gi|6016220|sp|P56663|KNOX5 MAIZE Homeobox protein knotted-1-like 5' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELKEMLL-----------KKYSGCLSRLRSEFLKKRKK--GKLPKDARSALMDWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWK-------PS---------------------------------------------------------------------------------------------------------------------------------------- [85] lcl|Smo_At5g25220_3_1_unnamed_protein_product ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?ES--------------------------------------------EEPE--------------------------------------------------------------------------------------------------------------------TTTTG--GGA-EIE----EDI---SS-S---EVGN------------EVDPLA-KD----------------------ENLKEYLA-----------QRYGAYIKGLKQEFLKKKKK--GKLPKHSTEKLYEWWEAHI-KWPYPS------------------EQEKANLATDTGLDQKQINNWFINQRKRHWN-------PS--EH-------------------------------------------------------DRPLSSV-SAR-GNTEG------------------------------------------------------------ [139] lcl|Smo_At5g25220_2_1_unnamed_protein_product MHGPCGMARW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGPKCG--------LVRKWAATW-------------------------------------PIVSVDRELIYLC----------------------------FSKVES--------------------------------------------EEPE--------------------------------------------------------------------------------------------------------------------TTTTG--GGA-EIE----EDI---SS-S---EVGN------------EVDPLA-KD----------------------ENLKEYLA-----------QRYGAYIKGLKQEFLKKKKK--GKLPKHSTEKLYEWWEAHI-KWPYPS------------------EQEKANLATDTGLDQKQINNWFINQRKRHWN-------PS--EH-------------------------------------------------------DRPLSSV-SAR-GNTEG------------------------------------------------------------ [181] 'gi|5802260|gb|AAD51632.1| KNOX1 homeodomain protein [Acetabularia acetabulum]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNDMDFAALFNQHEGNNPDNLQPN---------------APPYMLSPQQNAAATMPKSH-----CSGD------------------------------------------------------NTLMLS---------DMGEQVIMHPLYPDLVKAIMDCRK--VGGMD-ESRHHIQIRTEQVLEDLH--RKREQYQITG------------------RMPALD-P--ELDQFLRQYIQVLDELHAELLNI----NR----EADNILHMFTT--------------------------------------------QIAEVIN------------------------------------MPMDPRSM----------------------------------------------------------------------------HARNAFNAQSNIDM---TWFE-----------------------IR-NE----------------------QEQRVLLK-----------QKYRQELLALKEEFSKRKKR--GKLPTHSIEVLKSWWKEHI-AWPYPT------------------DSAKRSLASQTNLTSIQINNWFINQRKRHWHKLFPEGVPNSQEE-------------------------------------ALRSLKARGMLGMDSSGPMRLMSMDIESQ-ETQEVEQETEDIQTPNEFQFQSAFLNEHEQMMDEAGFTSRPNVQLPDAISQFQSQLGQIRKDSDE [382] 'gi|20977644|gb|AAM28233.1| knotted-1-like protein 3 [Helianthus annuus]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CEMLIKYEQELSKP----FK----EAMLFLSRMES--------------------------------------------QFKAITF------------------------------------SNSDSGCG--E------------------------------------------------------------------GGMDR--NGS-S-E-EE-LDVDM-NN-G-------------------VVDPQA-ED----------------------RELKGQLL-----------RKYSGYLGSLKQEFMKKRKK--GKLPKEARQQLLDWWTRHY-KWPYPS------------------EAQKLALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-AAH-P-H--------------------YFID--NIFGNP-YPMD-VS----------LL---------- [189] 'gi|11463939|dbj|BAB18583.1| CRKNOX1s [Ceratopteris richardii]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQETYCNVLQKYHDELMQP----YK----EAMTFFRKIEL--------------------------------------------QLNALSK------------------------------------GTVRLCHTGDDKADANCNSGQ--------------------------------------------------------HGLIS--GGSSGEEDAEEGDV---SC-G---EVDFHEE---------MIDPLA-DD----------------------QKVKEQLL-----------RKYSGYIYKLKQEFLKKKKK--GKLPKNAREKLLDWWNQHY-KWPYPS------------------EAEKAALAETTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQYVMVD-SPT-AHHHHHVL----HGH--------AHLTPHPLAPYAVMETMDAAAA--------AAAAVTMLPSLQ [240] 'gi|29788837|gb|AAP03383.1| putative homeobox, 5''-partial [Oryza sativa (japonica cultivar-group)]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D---------------------------------------------------------------------------NGSEG--GNS-S-E-DE-QEA---GG-GDMASAGL-PE---------ITSPCA-ED----------------------KELKSHLL-----------NKYSGYLSSLWRELSKKKKK--GKLPRDARQKLLHWWQLHY-RWPYPS------------------ELEKAALAESTGLDAKQINNWFINQRKRHWK-------PTP-PA-------------------------------------------------------MEYRSLQPAGAASYGGASAG----ASTSGGGSAVVRGME------GQHF-TGGGAYP--------RGDP-------- [175] 'gi|55740701|gb|AAV63998.1| homeobox transcription factor KN4 [Pinus taeda]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-S-S--E-EEF---SC-G---EIEV-HE----------VDPRA-ED----------------------RELKDQLL-----------RKYSGYFSSLKQEFLKKKKK--GKLPKEARQKLLEWWNVHY-KWPYPS------------------ETDKVALAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-SLN-PHG----A----S----------FYMD------G--------------------AEC-------- [135] 'gi|55740707|gb|AAV64001.1| homeobox transcription factor KN4 [Picea glauca] >gi|55740705|gb|AAV64000.1| homeobox transcription' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-S-S--E-EEF---SC-G---EIEV-HE----------VDPRA-ED----------------------RELKDQLL-----------RKYSGYFSSLKQEFLKKKKK--GKLPKEARQKLLEWWNVHY-KWPYPS------------------ETDKVSLAESTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQFVVMD-SLN-PHG----A----S----------FYMD------G--------------------ADC-------- [135] 'gi|913142|gb|AAB33488.1| KNOX4=class 1 knotted1-like homeobox gene knox4 product {homeodomain} [maize, Peptide Partial, 85 aa]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELKYQLL-----------KKYSGYLSSLRQEFSKKKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKIALAEATGLDQKQINNWFINQRKRHWK-------PS---------------------------------------------------------------------------------------------------------------------------------------- [85] 'gi|55740689|gb|AAV63992.1| homeobox transcription factor KN1 [Picea glauca]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E-EV-EDG---SG-G---ETDF-QE----------VDHHAVED----------------------RELKDHLL-----------RRYSGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWSLHD-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MHFMVMN-SHS-PHS----A----A----------LYVE------RHLM-TEG---Y--------HLDC-------- [142] 'gi|913143|gb|AAB33489.1| KNOX10=class 1 knotted1-like homeobox gene knox10 product {homeodomain} [maize, Peptide Partial, 88 aa' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ED----------------------NDLKNRLL-----------NKYSGYLSSLWRELSRKKKK--GKLPRDARQKLLHWWQLHY-RWPYPS------------------ELEKAALAESTGLEAKQINNWFINQRKRHWK-------QA---------------------------------------------------------------------------------------------------------------------------------------- [88] 'gi|66865827|gb|AAY57563.1| knotted 1-type homeobox protein 8 [Zea mays]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E----------IDPCA-ED----------------------KELKHQLL-----------RKYGGYLGGLRQEFSKRKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKMALAETTGLDPKQINNWFINQRKRHWK-------PAS-ED-------------------------------------------------------MPFAMMEGGFHVAQG---TA----A----------LYMDRPA---PPFM-ADDGGMY--------RLGS-------- [137] 'gi|6016224|sp|P56666|KNOX8 MAIZE Homeobox protein knotted-1-like 8' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELKHQLL-----------RKYGGYLGGLRQEFSKRKKK--GKLPKEARQKLLHWWELHY-KWPYPS------------------ETEKMALAETTGLDPKQINNWFINQRKRHWK-------PA---------------------------------------------------------------------------------------------------------------------------------------- [85] 'gi|6016218|sp|P56661|KNOX3 MAIZE Homeobox protein knotted-1-like 3' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DD----------------------KELKKQLL-----------RKYSGCLGNLRKELCKKRKK--DKLPKEARQKLLSWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PS---------------------------------------------------------------------------------------------------------------------------------------- [88] 'gi|55740703|gb|AAV63999.1| homeobox transcription factor KN4 [Pinus strobus]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EIEV-HE----------VDPRA-ED----------------------RELKDQLL-----------RKYSGYFNSLKQEFLKKKKK--GKLPKEARQKLLEWWNVHY-KWPYPS------------------ETDKVSLAESIGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------IQFVIMD-SLN-PHG----A----S----------FYMD------G--------------------AEC-------- [124] 'gi|55740687|gb|AAV63991.1| homeobox transcription factor KN1 [Pinus strobus]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E-EV-EDG---SG-G---ETDF-QE----------VDHHAVED----------------------RELKDHLL-----------RKYSGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQLMAMD-GQS-PHG----A----T----------LYVE------RHLM-TEG---Y--------HLDC-------- [142] 'gi|55740691|gb|AAV63993.1| homeobox transcription factor KN2 [Pinus strobus]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDG---SG-G---ETDF-QE----------VDHHAVED----------------------RELKDHLL-----------RKYSGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQLMAMD-GQS-PHG----A----T----------LYVE------RHLM-TEG---Y--------HLDC-------- [139] 'gi|55740693|gb|AAV63994.1| homeobox transcription factor KN2 [Picea glauca]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DF-QE----------VDHHAVED----------------------RELKDHLL-----------RKYSGYLSSLKQEFMKKKKK--GKLPKDARQKLLDWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWK-------PS--ED-------------------------------------------------------MQLMAMD-GQS-PHG----A----T----------LYVE------RHLM-TEG---Y--------HLDC-------- [131] 'gi|15637071|dbj|BAB68201.1| transcription factor OSH3 [Oryza meridionalis] >gi|15637069|dbj|BAB68200.1| transcription factor OS' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------MQFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPASAVY--------TARPDH------ [138] 'gi|15637047|dbj|BAB68189.1| transcription factor OSH3 [Oryza sativa (japonica cultivar-group)] >gi|15636985|dbj|BAB68158.1| tra' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------MEFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPASAVY--------TARPDH------ [138] 'gi|15637003|dbj|BAB68167.1| transcription factor OSH3 [Oryza rufipogon]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------TQFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAVAPASAVY--------TARPDH------ [138] 'gi|15637073|dbj|BAB68202.1| transcription factor OSH3 [Oryza longistaminata] >gi|15637065|dbj|BAB68198.1| transcription factor' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------MQFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPAAAVY--------TARPDH------ [138] 'gi|15637075|dbj|BAB68203.1| transcription factor OSH3 [Oryza meridionalis]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------MQFAVME-AYH-HQSADAAA----A----------FYVD--ARLVGATAAAPAAAVY--------TTRPDH------ [136] 'gi|15637043|dbj|BAB68187.1| transcription factor OSH3 [Oryza sativa (japonica cultivar-group)] >gi|15636989|dbj|BAB68160.1| tra' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------MEFAVME-AYH-HQSTDAAA----A----------FYVNVDARLVGATAAAPASAVY--------TARPDH------ [138] lcl|Ppa_At5g25220_1_1_unnamed_protein_product ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?TPDEEDNFGSDIGTKDM-SQDLNDLEILGEENLMYTADIDES--------IVIDPDA-AD----------------------EELKKMLR-----------LKYGKHIAGLKAEFNRVRKK--GKLPTNARQILKDWFSRHS-YWPYPS------------------EMEKAYLQRLCGLNLKQINNWFINERKRHWSCEGKCMYPN-----------------------------------------------------------TKFYPRDGHVDPNNHGEGYLE-----------------------------Q-------------------------- [166] 'gi|15637067|dbj|BAB68199.1| transcription factor OSH3 [Oryza barthii] >gi|15637057|dbj|BAB68194.1| transcription factor OSH3 [O' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DD----------------------KALKRHLL-----------RKYTGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------MQFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPAAAVY--------TARPDH------ [138] 'gi|55740699|gb|AAV63997.1| homeobox transcription factor KN3 [Picea mariana] >gi|55740697|gb|AAV63996.1| homeobox transcription' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EVEF-HE----------VDPHA-ED----------------------RELKDQLL-----------RKYSGYLSSLKQEFLKKKKK--GKLPKEARQKLLDWWTRNY-KWPYPS------------------ESQKIALAESTGLDQKQINNWFINQRKRHWK-------PS--EE-------------------------------------------------------MQFVVMD-SPN-PHN----A----A----------FFLE------GHLR-TDGTA-F--------SMDC-------- [134] 'gi|4887612|dbj|BAA77819.1| homeobox gene [Oryza sativa (japonica cultivar-group)]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLLVECKEELSRP----LQ----EAEEFLRTVES----------------------------------------------ELNSI------------------------------------NSGPPLTALIS------------------------------------------------------------------ESKAG--LDS-S-D-DD-EHE---DG-S---GMEM-MEAAEDED-LGIIDPRS-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPNPS------------------EMEKIALAESTGLEQKQINNCFINQRKRHWK-------PT--EE-------------------------------------------------------MEFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPASAVY--------TARPDHGVWRA- [222] lcl|Ppa_At5g25220_3_1_unnamed_protein_product ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?TPDEDDNNGFDIGPMEYGAQASDDLYLPADENLMYPLDIDES--------VVVDPMA-SD----------------------EEIKKALR-----------KKYGRHIGELKAEFNRVRKK--GKLPSSARSILKDWFNRHS-YWPYPS------------------EMEKQYLQKLCGLNLKQINNWFINERKRHWSCEGKCMHPN-----------------------------------------------------------TKFYSNA-----NGQCNGHLE-------------------------------------------------------- [161] 'gi|15637027|dbj|BAB68179.1| transcription factor OSH3 [Oryza sativa (japonica cultivar-group)] >gi|15636977|dbj|BAB68154.1| tra' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWWELHY-RWPNPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------MEFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPASAVY--------TARPDH------ [138] lcl|Smo_At5g25220_7_2_unnamed_protein_product -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?LFISIDW--IGLD---------------------------------------------------------------------CNTLSLDQTGIANP----IA----KDHHNRQQRQQ--------------------------------------------QEQWWSD------------------------------------RDGSIDRRSTEEPAVVRLFSAERILLLLTVLSA--------------------------------------------ENEDA--SETYE-DFMEEAES---GGIG---EVDT------------DLDPLA-GD----------------------KELKKVLM-----------KRYGGYIKGLTQEYLKKKKK--GKLPKESRQQLLDWWSQHQ-DHPYPN------------------ENQKSNLAQSTGLDPKQINNWFINQRKRHWN-------PQ--AVPFLREVSHRFLSKARYTTLKRVSPPHSLPMDWFSLLFCLAPISFGVVFFTSEECANSCQEAE-GAV-YKIAKRNSEVTFLRLKVEEEGIQEIVRQITTLSFLSFCVANLLFL--------QGRRCGGKADRT [323] lcl|Smo_At5g25220_7_1_unnamed_protein_product --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?--------------------------------------------ENEDA--SETYE-DFMEEAES---GGIG---EVDT------------DLDPLA-GD----------------------KELKKVLM-----------KRYGGYIKGLTQEYLKKKKK--GKLPKESRQQLLDWWSQHQ-DHPYPN------------------ENQKSNLAQSTGLDPKQINNWFINQRKRHWN-------PQ--AV-----------------------------------------------------------RGE-SSQ-QRDAKSSS--------------------------------------------------------- [137] 'gi|15636953|dbj|BAB68142.1| transcription factor OSH3 [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-DD----------------------KALKRHLL-----------RKYSGYLGGLRKELSKKRKK--GKLPKEARQKLLTWCELHY-RWPYPS------------------EMEKIALAESTGLEQKQINNWFINQRKRHWK-------PT--EE-------------------------------------------------------MEFAVME-AYH-HQSTDAAA----A----------FYVDVDARLVGATAAAPASAVY--------TARPDH------ [138] lcl|Ppa_At5g25220_4_1_unnamed_protein_product --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?LLSESIEKPKGAKYGILLIKLRSNHDLTES----------------------------------------------VEVCA------------------------------------------------------------------------------------------------------------ATPDE-DNCGFDIGPLEYGAQEGDDLDTLGDENVMYPLDIDES--------VIVDPMA-SD----------------------EDIKKALR-----------KKYGRHIGELKAEFNRVRKK--GKLPTSARTILKDWFNRHS-HWPYPS------------------EMEKQYLQRICGLNLKQINNWFINERKRHWSCEGL----------------------------------------------------------------VSVRTMSSLDAIKQAITRKLEKDLMKMLSRVRLQMFEDLEEYFSSIAESLD-------------------------- [226] 'gi|89953327|gb|ABD83273.1| Fgenesh protein 1 [Beta vulgaris]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRVES--------------------------------------------TWP-----------------------------------------------------------------------------------------------------------------------DEG--VVS-S-D----EDY---SG-G---EIDV-QD----------LQPKD-EE----------------------RDLKDQLL-----------RRFGSHISSLKLEFSKKKKK--GKLPREARQMLFEWWNAHY-KWPYPTLAWTYVSIISQHPAIAVQEADKIALAEMTGLDQRQINNWFINQRKRHWK-------PS--EN-------------------------------------------------------MQYALME-NFS-GQ---------------------YFTDD------------------------------------- [158] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-774 782-792 813-814 834 841-858 890-1034; END; BEGIN MacClade; Version 4.0 87; LastModified -1062593097; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '9' '490' '1' all; EditorPosition '240' '-5' '755' '1641'; TreeWindowPosition '46' '6' '985' '1630'; ListWindow Characters closed Geneva '9' '50' '10' '129' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '52' '30' '968' '1620'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '845' '42' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '50' 001011001; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '0' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END;