#NEXUS [MacClade 4.08 registered to M. Hasebe, NIBB] BEGIN DATA; DIMENSIONS NTAX=13 NCHAR=4901; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100 2110 2120 2130 2140 2150 2160 2170 2180 2190 2200 2210 2220 2230 2240 2250 2260 2270 2280 2290 2300 2310 2320 2330 2340 2350 2360 2370 2380 2390 2400 2410 2420 2430 2440 2450 2460 2470 2480 2490 2500 2510 2520 2530 2540 2550 2560 2570 2580 2590 2600 2610 2620 2630 2640 2650 2660 2670 2680 2690 2700 2710 2720 2730 2740 2750 2760 2770 2780 2790 2800 2810 2820 2830 2840 2850 2860 2870 2880 2890 2900 2910 2920 2930 2940 2950 2960 2970 2980 2990 3000 3010 3020 3030 3040 3050 3060 3070 3080 3090 3100 3110 3120 3130 3140 3150 3160 3170 3180 3190 3200 3210 3220 3230 3240 3250 3260 3270 3280 3290 3300 3310 3320 3330 3340 3350 3360 3370 3380 3390 3400 3410 3420 3430 3440 3450 3460 3470 3480 3490 3500 3510 3520 3530 3540 3550 3560 3570 3580 3590 3600 3610 3620 3630 3640 3650 3660 3670 3680 3690 3700 3710 3720 3730 3740 3750 3760 3770 3780 3790 3800 3810 3820 3830 3840 3850 3860 3870 3880 3890 3900 3910 3920 3930 3940 3950 3960 3970 3980 3990 4000 4010 4020 4030 4040 4050 4060 4070 4080 4090 4100 4110 4120 4130 4140 4150 4160 4170 4180 4190 4200 4210 4220 4230 4240 4250 4260 4270 4280 4290 4300 4310 4320 4330 4340 4350 4360 4370 4380 4390 4400 4410 4420 4430 4440 4450 4460 4470 4480 4490 4500 4510 4520 4530 4540 4550 4560 4570 4580 4590 4600 4610 4620 4630 4640 4650 4660 4670 4680 4690 4700 4710 4720 4730 4740 4750 4760 4770 4780 4790 4800 4810 4820 4830 4840 4850 4860 4870 4880 4890 4900] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|30678929|ref|NP 849590.1| EMB2748 [Arabidopsis thaliana]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAGFSSLIPRTLLKRAVSSATRNLTAP--LASISAARNLFIGGGCDENYGEPGVFSHSNGIRKYNTVGNAGALTGPFHHLLGVNQTNKPAFLRVQSMSYQFVADSHSSPKRIVKNEDEEDF-----------------SDSSKK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GNAENPRKHQIGENIPKKDKI---KFLVNT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLDIEDNKEAVYGALD---AWVAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERNFPIASLKIVIASLEKEHQWHRMV------------------------------------------------------------------------------------------------------------QVIKWILSKGQG--------------------------------------------------------------------------------NT---MGTYGQLIRALDMD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RRAEEA-----------HVIWRKKV-----------------------------------------------GNDLHSVPWQ----------------------------------------------------------------------------------------------------------LCLQMMRIYFRNNM----------------------------------------------------------------------------------------------------LQELVKVMKL-FKDL------------------------------------------------------------------------------------ESYDRKPPDKHIVQTVA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAYELLGMLD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKERVVTKYSHLLLGTPSDDKPSRSSRKKKKPELRIPEATTEGAVDAAKAEIQEERKENLDNHQESEAATEKQFEHGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [384] 'gi|77552899|gb|ABA95695.1| hypothetical protein LOC Os12g02950 [Oryza sativa (japonica cultivar-group)]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPMDILGQSIPTIASLFGLTLHGLCDGPGPQNYPHHYQSLLPLPHTNRIGLGSPSAAAAAPMLGHLRRSSQRLPVANLAVYSIQSSHIE----------------------------------------------------------------DDVAIIKHIQNSTKE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKQGPVGKNLSSAEKR---KFLVNT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLDLEDSKEGVYSTLD---AWVAF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EQEFPVASLKQALVALEKEEQWHRIV------------------------------------------------------------------------------------------------------------QVIKWMLSKGQG--------------------------------------------------------------------------------KT---IRTYEQLVCALEKD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NRADEA-----------CRIWELKI-----------------------------------------------AHDLQSVPWR----------------------------------------------------------------------------------------------------------FCRLMLGIYYRNNR----------------------------------------------------------------------------------------------------LDTLV---KL-FKNL------------------------------------------------------------------------------------EACGRKPPSKDIVRKVE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DTYEMLGLVE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKKELLEKYKELF------DKPSSNDRKKGRQFKKAEKNTKTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [314] 'gi|77548500|gb|ABA91297.1| expressed protein [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLGHLRRSSHRVLIANLAVYSIQSSQIEFIAGWCSNHTTRN--FSADTSNRVSNDRGHQSRELKP-----------------------SLVKDDVAIIERIQNSTKE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRQGPVGKNLSSAEKR---KFLVNT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLDLEDSKEGVYSTLD---AWVAF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EQDFPVASIKQALVALEKEEQWHRIV------------------------------------------------------------------------------------------------------------QVIKWMSSKGQG--------------------------------------------------------------------------------KT---IRTYEQLVCALEKD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NRADEA-----------CRIWEFKI-----------------------------------------------AHDLQSVPWR----------------------------------------------------------------------------------------------------------FCRLMLGIYYRNNK----------------------------------------------------------------------------------------------------LDRLV---KL-FKNL------------------------------------------------------------------------------------EACGRKPPSKDIVRKVE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAYEMLGLVE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKKELLEKYKDLF------DKPSSNDKKKGRQFKKVEKNIKPA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [292] 'gi|79325165|ref|NP 001031667.1| unknown protein [Arabidopsis thaliana]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML----------------------------------FFASISTLRKLLLVEDEKVWLLHQIKEKEAGKLDRGYVATVNSKE----IK-----KVGKKEHHLWKKNDSAGSGQKA---LNLVRM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSGLPNEKEAVYGALN---KWVAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EVEFPIIAAAKALQILRKRSQWHRVI------------------------------------------------------------------------------------------------------------QLAKWMLSKGQG--------------------------------------------------------------------------------AT---MGTYDILLLAFDMD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERADEA-----------ESLWNMIL-----------------------------------------------HTHTRSIPRR----------------------------------------------------------------------------------------------------------LFARMIALYAHHDL----------------------------------------------------------------------------------------------------HDKVI---EV-FADM------------------------------------------------------------------------------------EELKVS-PDEDSARRVA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAFRELNQEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NRKLILRRYLSEY-----------KYIYFNGERVR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKRY------------------------------------------------------------------------------------------------------------------------------------------------FSEDS----------------------------------------------------------------------------------------------------------------------------------------------------------------- [260] 'gi|7268691|emb|CAB78899.1| putative protein [Arabidopsis thaliana] >gi|2832625|emb|CAA16754.1| putative protein [Arabidopsis th' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML----------------------------------FFASISTLRKLLLVEDEKVWLLHQIKEKEAGKLDRGYVATVNSKE----IK-----KVGKKEHHLWKKNDSAGSGQKA---LNLVRM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSGLPNEKEAVYGALN---KWVAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EVEFPIIAAAKALQILRKRSQWHRVI------------------------------------------------------------------------------------------------------------QLAKWMLSKGQG--------------------------------------------------------------------------------AT---MGTYDILLLAFDMD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERADEA-----------ESLWNMIL-----------------------------------------------HTHTRSIPRR----------------------------------------------------------------------------------------------------------LFARMIALYAHHDL----------------------------------------------------------------------------------------------------HDKVI---EV-FADM------------------------------------------------------------------------------------EELKVS-PDEDSARRVA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAFRELNQEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NRKLILRRYLSEY-----------KYIYFNDQSLSSSSSRSLSFRIRVEMARVCVMMMAMAIAMAMNIAMGDPIAPCYFIFGDSLVDSGNNNRLTSLARANYFPYGIDFQYGPTGRFSNGKTTVDVITELLGFDDYITPYSEARGEDILRGVNYASAAAGIREETGRQLGARITFAGQVANHVNTVSQVVN---ILGDENEAANYLSKCIYSIGLGSNDYLNNYFMPVYYSTGSQYSPDAYANDLINRYTEQLRIMYNNGARKFALVGIGAIGCSPNELAQNSRDGVTCDERINSANRIFNSKLVSLVDHFNQNTPGAKFTYINAYGIFQDMVANPSRYGFRVTNAGCCGVGRNNGQITCLPGQAPCLNRDEYVFWDAFHPGEAANVVIGSRSFQRESASDAHPYDIQQLARL-------------------------------------------------------------------------------------------------------------------------------------------------- [626] 'gi|18415645|ref|NP 567622.1| EMB1417 [Arabidopsis thaliana] >gi|21618230|gb|AAM67280.1| unknown [Arabidopsis thaliana] >gi|5197' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAAR-----GPRPRSPRVWKTRKRIGTISKA---AKMIAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKGLSNVKEEVYGALD---SFIAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELEFPLVIVKKALVILEDEKEWKKII------------------------------------------------------------------------------------------------------------QVTKWMLSKGQG--------------------------------------------------------------------------------RT---MGTYFSLLNALAED-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NRLDEA-----------EELWNKLF-----------------------------------------------MEHLEGTPRK----------------------------------------------------------------------------------------------------------FFNKMISIYYKRDM----------------------------------------------------------------------------------------------------HQKLF---EV-FADM------------------------------------------------------------------------------------EELGVK-PNVAIVSMVG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVFVKLEMKD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYEKLMKKYPPPQ----------WEFRYIKGRRVKVKAKQLNELSEGEGGLSSDEDKIDNEIES---------------------------------------------------------------------------------------EEEDGEDLSEEEEDEKELLGGSQGQITSREPSLDHLDSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [307] lcl|Ppa_AT1G04590_1_1_unnamed_protein_product --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?ATSALVVCNAESPF-----------------GVADLKQSERSSFVSRCDGLALNHG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVIMNAVDRIDSDEELLDNQDRIIGALQIGVIGCRRSASWICFGG-----GKRPRRKRAWKTTNRKGSFAKA---RKLVDL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDETPPAKEDIYGALD---AFVAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELEFPIIAIKKAMAFMAEEQKWRQII------------------------------------------------------------------------------------------------------------QVSKWMLSKGQG--------------------------------------------------------------------------------KT---MGTFTLLLEALDHE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRVEEA-----------DALFEKLL-----------------------------------------------TEHEDATPRY----------------------------------------------------------------------------------------------------------MFTVVIAMFERHNN----------------------------------------------------------------------------------------------------PRRLL---QV-FADM------------------------------------------------------------------------------------EELEIK-PDMVTVERVA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTYRSIGLMK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAEAVEAKYPPTK----------WGFRYKRGKAYRVRVTADDKVIKSDGSGKSDDSGKTESGAEEGEES-----------------------------------------------------------------------------DVDSDSDDEGFTYEDEDFTRETILST--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [348] lcl|Smo_AT1G04590_3_1_unnamed_protein_product ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPLLRELGYLAFDRGASPAALYSALRAARRAREAQLDLCEAQEAPAWAYDEQGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGECGKLESRQ----NE-----VPNERTKAPYDVLPRRTKMQRA---RDLVDA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLPLPDVKEEIWAACD---TWIAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELRFPLHTIKMATHRLFRLKQWRRVI------------------------------------------------------------------------------------------------------------HVIKWMFSKGHG--------------------------------------------------------------------------------FT---MNTYGCLLRALDID-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRVDEV-----------EHIWHTFV-----------------------------------------------VTKQESVPRV----------------------------------------------------------------------------------------------------------MYARMITMYDRRAL----------------------------------------------------------------------------------------------------PDKAI---KM-FKEL------------------------------------------------------------------------------------ELSGTR-PDPATIIRIG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIYEKLGFTN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTAELLEKHKPTK------RFISFKFSRQWCENSGDKESPRVRRAGEEEDAAAAEDDRVAELCRAIDFK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [309] lcl|Smo_AT1G04590_1_1_unnamed_protein_product ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?REAQLDLCEAQEAPAWAYDEQGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGECGKLESRQ----NE-----VPNERTKAPYDVLPRRTKMQRA---RDLVDA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLPLPDVKEEIWAACD---TWIAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELRFPLHTIKMATHRLFRLKQWRRVI------------------------------------------------------------------------------------------------------------HVIKWMFSKGHG--------------------------------------------------------------------------------FT---MNTYGCLLRALDID-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRVDEV-----------EHIWHTFV-----------------------------------------------VTKQESVPRV----------------------------------------------------------------------------------------------------------MYARMITMYDRRAL----------------------------------------------------------------------------------------------------PDKAI---KM-FKEL------------------------------------------------------------------------------------ELSGTR-PDPATIIRIG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIYEKLGFTN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTAELLEKHKPTK------RFISFKFRTKSHKFMGVPGHDRRRLTSSEKQKKRKLRERLATI---IDFS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [276] lcl|Smo_AT1G04590_5_2_unnamed_protein_product ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?RDAQLDLCEAQEAPAWAYDEQGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGECGKLESRQ----NE-----VPNERTKAPYDVLPRRTKMQRA---RDLVDA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLPLPDVKEEIWAACD---TWIAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELRFPLHTIKMATHRLFRLKQWRRVI------------------------------------------------------------------------------------------------------------HVIKWMFSKGHG--------------------------------------------------------------------------------FT---MNTYGCLLRALDID-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRVDEV-----------EHIWHTFV-----------------------------------------------VTKQESVPRV----------------------------------------------------------------------------------------------------------MYARMITTYDRRAL----------------------------------------------------------------------------------------------------PDKAI---KM-FKEL------------------------------------------------------------------------------------ELSGTR-PDPATIIKIG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIYEKLGFTN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTAELLEKHKPTK------TFISFKFRTKSHKFMGVPGHDRRRLTSSEKQKKRKLRERLATI---IDFS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [276] 'gi|50938215|ref|XP 478635.1| pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa (japonica cultivar-gr' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAG----------------------AFSLRLGPRIAGTPPPPAS-------------------ATKGEGRGGGRPTGSRAL----VS-----KKPNKEHHLWIRKDSAGSGKKA---LHLVNT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSKLPNEKEAVYGALD---KWTAF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPEFPTIAAAKALEMLKRRRQWLRII------------------------------------------------------------------------------------------------------------QVAKWLMSKGQV--------------------------------------------------------------------------------LT---WTTYDTLLLALFMD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRIDEA-----------ESIWNNII-----------------------------------------------QTHTRSVPKR----------------------------------------------------------------------------------------------------------LFSRMILIYDTRHC----------------------------------------------------------------------------------------------------PDKVL---EVIYADM------------------------------------------------------------------------------------EELGVH-PDEDTTRRIG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAFVTLGQED-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KEKIVLEKYLKKY-----------KYMHFNGERVRVRRGGPLT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [253] lcl|Smo_AT1G04590_4_1_unnamed_protein_product ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?LRELSFSGFHKDRVTDGLQAGIISCRRVRSWICFAQGKKGDKNQGEQPKTWKKTAKRGSSLKA---VNLIKC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IANLSDCKEDIYGALD---AWSAF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EVDFPIEPVKKALRILRDQWQWKRVIQVCGFFLVLLSLEAC---------------------------------------------------------------------------------------------QVSKWMLSKGHG--------------------------------------------------------------------------------KT---MATYQLLIVALEKE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRIEEA-----------EEVFHGVF-----------------------------------------------RRYLDALPRS----------------------------------------------------------------------------------------------------------HFSLMMGIYNRAGM----------------------------------------------------------------------------------------------------YEKLL---DL-FADM------------------------------------------------------------------------------------EELNVR-PDQGLVEMVA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EVYFKVGMPE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KSEKVREKYPLRR----------YEYRYLKGRRIRVPTKRLY----------QAESGGGGDDLSVQEQE------------------------------------------------------------EEEEEEE---------------EELQGGGLEDIEENEEVIVSSANDEDEVELPEKMEEDGEL---LERALLGEPVGEELLETKWQEQQILQAKKQCIEAIQSCKSLPALREIHSRAATLLPRIKDDYFILNNLIEMYGKCGSATEARKVFDGIY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [420] 'gi|82538709|ref|XP 723790.1| chloroquine resistance marker protein [Plasmodium yoelii yoelii str. 17XNL] >gi|23478204|gb|EAA153' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVSSSMINGDIPLAKNACVIRPKVNVNLHISLKNRKNAKNGAANVSHNLQKHVEKRINERSLYYAAKEKYYRNKGKKYDKLRQSVECGESHILKEY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHSRNRVKRCSRKHKKHNYEKCSVCKSLVQRYLVLGENANEIVEKINE--------------------------------------------------------------------------------KTNDSMCNSICNTDR-----------------NSKMNELIKGEVEENYSTTKRITPA-----------------------------------------------------APVRKFDIAENI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KNDDIIRLPKNESLDLDINNEKDLNSYNLSNMKHIVLSHDKKL----GD-----TYIISNKDIPDLENRVEQKDNS---YQLVKCENQSN-----------------------------------------------------------------------------DISTKEYMYTIFADLNVSEMIDLMNGKPSNITPVKEEQSQLNIALDEIEKKISIKKLANQSLNSENCIVDDKKSVKLEKKRKLKKKASNLVKLSEEGDVDNESNC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSKSSGSSSRCFKRGKTILKKKSSSSCYNSD--KFTQVEKKELKEKKSYKNKYASNELIGSKNHQFTKKTFVSRNLQIAKEIYNKDETLKNNKAMKNNINSNSETITSYEKVENG---------------------------------------------------------KDVCDSFKLSNQSTALGSSTILGKYIPLEIYQKEKYCCKQLEREVAREDEIVIEDEIISENVIVIEDEIISEDVIVIEDESISENEVANEDEI------VSENEVASENEIVSENENV-----------------------------------------------------------------------------------SENEIVSENEI------------------------------------VSENEIVSENEIVSENEVASENEIVSENENVSENDCSNKSDLGHHYSDEKLFYESYKLKDSDAKKIDDEQPEGETPIKMSKSDKIKETNHSNTKKTHVNNLTQEEHRRLLEYYDGKLPSTFYNEENFENPFKANDEGSEEPDYSNLFLGSFDINKKDETEENSAIESNNNKFTSSFFPSSFFNSDEPIIANEIFGLPNTENNDVDTPVKFKNSFETTKDNLNTKKDNNNAVEKKDRQIIKEEKNYSRKRSKNIRF-ESSPQSNKKFKYSNNYMNINNVVEKNDDQDT-----------------------------------------QYEEEKRQNLLKNTRAKSYSSIIKKNCKLMSYGQNKDYDSMPKTSIKKKVRFQKEVTIIPNLPLKKNNIDFPNLINENNNMLISYEQNRNINNVIERQGNQNVSIKKEIKINPSKLDNVNNNIMNLNIVTKNNAKNKYMNSVNDTCQNREICTPIHMTHKNNNEIFKSRETESLS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KSLQKRDMYIKQGLYKDIGMDLINVVHKLK-EKAISEQHEEKKIEPTNELSKNT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDSNDEASITTEFKTVDEILAENERRILNYYAMLDKAEAIK------KEQEIKNSTDKILIKKEQEIKNSTDKILIKKEQEIKNSADKILIKKEQEI------------------------------------------------------------KNSADKI---------------LIKKEKEINNSTNEILIKKEKEIKNSIDKNLIKKEKEEPI---VVNNNNLSPLNSRKRALSEKPTPPKKYTKKILKRNVNKSASCSPSQSRHSLSDNKNIYAKNDTKDIKTLEKSNNVNDHNENSHYSEGGATDSSAAAQSSVDKMYERYLKYAGTKRDWENRFVEGKSNPFSNGQPYHNDILEKHTSCLISERTQRHLEKRSYEFQKQKERERMNRNSTRRPVVEAPKVKD----------------------------------------------------------------------------------------------------TPILEKNYMPQKNIPKTPKNTPTPPKNIQTTPKNIPKTPKNTPTPPKNTPTSKKNTPTPTKNTSTPTKKYSNNIRK [1533] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-2361 2378-2380 2387-2557 2574-2807 2834-2941 2954-3033 3036-3038 3053-3267 3274-3284 3293-3339 3350-3455 3470-3569 3575-3577 3580 3585-3668 3675 3686-4069 4080-4342 4356-4366 4378-4901; END; BEGIN MacClade; Version 4.0 87; LastModified -1064766915; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010111 '1' '12' Geneva '8' '372' '1' all; EditorPosition '46' '6' '691' '967'; TreeWindowPosition '46' '6' '703' '974'; ListWindow Characters closed Geneva '9' '50' '10' '273' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '273' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets 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