#NEXUS 
[MacClade 4.08 registered to M. Hasebe, NIBB]


BEGIN DATA;
	DIMENSIONS  NTAX=146 NCHAR=1227;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|22329771|ref|NP 564214.2| SEP3 (SEPALLATA3); transcription factor [Arabidopsis thaliana] >gi|2345158|gb|AAB67832.1| AGL9 [Ar'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNR------G---KLYEFCSS-S------S-------------------------------------------------------------------------------------------------MLRTLERYQKCNY---GAPEPN-V-PSR--E--A---LAVELS-SQQEY-LKLKERYDA--LQRTQ-----------------------------------RN-------------------------------LLGE------------DLG-PLS-TKELESLERQL---DSSLKQIRALRTQFMLD-------------------------------------------------------------------------------------------------------QLNDLQSK------ERMLTET-------------NKTLRL--R-------LA-DG----------------------------YQMP--LQLNPNQ-----------------------------------------------------E------------------------EVDHYGRHHH--QQQ--QHSQ--------AFFQPLE--------------------CE----PIL-QIG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQGQQDGMGAGPSVNNYMLGWLPYDTNSI------------------------------------------------------------------   [251]
'gi|60265518|gb|AAX15917.1| AGL2 [Amborella trichopoda]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNR------G---KLYEFCST-S------S-------------------------------------------------------------------------------------------------MVKTLERYQKCNY---GALETN-V-PTR--E--T-------QS-SYQEY-LKLKARVES--LQRSQ-----------------------------------RN-------------------------------LLGE------------DLG-PLS-SKELEQLEQQL---EMSLKQIRSTKTQCMFD-------------------------------------------------------------------------------------------------------QLADLRRR------ELALQET-------------NKALKR--K-------LE-GA----------------------------SASN--PPQL------------------------------------------------------------------------AWE-------NNGQNIHYN--RQP--AHTE-------GF-FHPLE--------------------CD----STL-QIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y---HPSCPDQM-------PVA--APVQNVNAFLPGWL------V------------------------------------------------------------------   [243]
'gi|18417790|ref|NP 568322.1| SEP1 (SEPALLATA1); DNA binding / transcription factor [Arabidopsis thaliana] >gi|52548000|gb|AAU82'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNR------G---KLYEFCSS-S------N-------------------------------------------------------------------------------------------------MLKTLDRYQKCSY---GSIEVN-NKPAK--E--L-------EN-SYREY-LKLKGRYEN--LQRQQ-----------------------------------RN-------------------------------LLGE------------DLG-PLN-SKELEQLERQL---DGSLKQVRSIKTQYMLD-------------------------------------------------------------------------------------------------------QLSDLQNK------EQMLLET-------------NRALAM--K-------LD-DM----------------------------IGVR--SHHMGGG-----------------------------------------------------G---------------GWEG-------GEQNVTYA--HHQ--AQSQ-------GL-YQPLE--------------------CN----PTL-QMG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y--DNPVCSEQI-------TATTQAQAQQGNGYIPGWM------L------------------------------------------------------------------   [251]
'gi|57222144|gb|AAW38979.1| At3g02310 [Arabidopsis thaliana] >gi|15232883|ref|NP 186880.1| SEP2 (SEPALLATA2); DNA binding / tran'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNR------G---KLYEFCST-S------N-------------------------------------------------------------------------------------------------MLKTLERYQKCSY---GSIEVN-NKPAK--E--L-------EN-SYREY-LKLKGRYEN--LQRQQ-----------------------------------RN-------------------------------LLGE------------DLG-PLN-SKELEQLERQL---DGSLKQVRCIKTQYMLD-------------------------------------------------------------------------------------------------------QLSDLQGK------EHILLDA-------------NRALSM--K-------LE-DM----------------------------IGVR--HHHIGG----------------------------------------------------------------------GWEG------GDQQNIAYG--HPQ--AHSQ-------GL-YQSLE--------------------CD----PTL-QIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y--SHPVCSEQM-------AVTVQGQSQQGNGYIPGWM------L------------------------------------------------------------------   [250]
lcl|O09g32948.1.79.m06382O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNR------G---KLYEFCSG-Q------S-------------------------------------------------------------------------------------------------MTRTLERYQKFSY---GGPDTA-I-QNK--E--N---ELV-QS-SRNEY-LKLKARVEN--LQRTQ-----------------------------------RN-------------------------------LLGE------------DLG-TLG-IKELEQLEKQL---DSSLRHIRSTRTQHMLD-------------------------------------------------------------------------------------------------------QLTDLQRR------EQMLCEA-------------NKCLRR--K-------LE-ES----------------------------NQLH--G-QV-------------------------------------------------------------------------WE-------HGATLLGYE--RQSPHAVQQVPPHGGNGF-FHSLE------------------AAAE----PTL-QIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F---TPEQ---M-------NNS------CVTAFMPTWL------P------------------------------------------------------------------   [248]
lcl|O08g41950.2.78.m26533O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNR------G---KLYEFCST-Q------S-------------------------------------------------------------------------------------------------MTKTLEKYQKCSY---AGPETA-V-QNR--E--S---EQL-KA-SRNEY-LKLKARVEN--LQRTQ-----------------------------------RN-------------------------------LLGE------------DLD-SLG-IKELESLEKQL---DSSLKHVRTTRTKHLVD-------------------------------------------------------------------------------------------------------QLTELQRK------EQMVSEA-------------NRCLRR--K-------LE-ES----------------------------NHVR--GQQV-------------------------------------------------------------------------WE-------QGCNLIGYE--RQP--EVQQ-PLHGGNGF-FHPLD------------------AAGE----PTL-QIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y---PAEHHEAM-------NSA------CMNTYMPPWL------P------------------------------------------------------------------   [249]
'gi|1206003|gb|AAD09206.1| putative MADS-box family transcription factor [Pinus radiata]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNR------G---KLYEFCSS-S------S-------------------------------------------------------------------------------------------------MMKTIEKYQKCSY---GSLETN-C-SIN--E--M-------QN-SYQDY-LELKARVEV--LQRSQ-----------------------------------RN-------------------------------LLGE------------ELG-PLN-SKELEQLEHQL---ENSLKQIRSAKTQFMFD-------------------------------------------------------------------------------------------------------QLAHLQHK------EQMLVEA-------------NRELRK--K-------LE-ES----------------------------NTRI--PLRL------------------------------------------------------------------------GWEA------EDHNNISYR--RLP--TQSQ-------GLIFQPLG--------------------GY----PNM-QIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y---NPAGSNEL-------NVS--PADQHPNGFIPGWM------L------------------------------------------------------------------   [245]
lcl|O08g41950.1.78.m08173O_unnamed_protein_product                                    --------------------------------------------------MAEKKKKKKKKKPQSLLVLTSWRSIGM--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNR------G---KLYEFCST-Q------S-------------------------------------------------------------------------------------------------MTKTLEKYQKCSY---AGPETA-V-QNR--E--S---EQL-KA-SRNEY-LKLKARVEN--LQRTQRQYYKSKHRLCLVRSKVWNLVKIRDDVTEKLCMYERN-------------------------------LLGE------------DLD-SLG-IKELESLEKQL---DSSLKHVRTTRTKHLVD-------------------------------------------------------------------------------------------------------QLTELQRK------EQMVSEA-------------NRCLRR--K-------LE-ES----------------------------NHVR--GQQV-------------------------------------------------------------------------WE-------QGCNLIGYE--RQP--EVQQ-PLHGGNGF-FHPLD------------------AAGE----PTL-QIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y---PAEHHEAM-------NSA------CMNTYMPPWL------P------------------------------------------------------------------   [310]
'gi|1206005|gb|AAD09207.1| putative MADS-box family transcription factor [Pinus radiata]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSR------G---KLYEFGS--A------G-------------------------------------------------------------------------------------------------MLKTLERYQKCSY---VLQDAT-V-SDR--E--A-------QN-WHQEV-GKLKARVEL--LQRSQ-----------------------------------RH-------------------------------LLGE------------DLG-PLS-IKELQQLERQL---EVALTHVRSRKTQVMLE-------------------------------------------------------------------------------------------------------MMDELRRK------ERILQEV-------------NKSLRK--K-------LQ-EA----------------------------EGQA---------------------------------------------------------------------FNAMQPPPHAWDSHAVANN----AYAMQ-------HPSN------------AVD------------------C--E----PTL-QIG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQYAPPESS----------MPRHEQAQNNYMQGWM------V------------------------------------------------------------------   [242]
'gi|62122341|dbj|BAD93165.1| MADS-box transcription factor GbMADS1 [Ginkgo biloba]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSTR------G---KLYEFAS--S------S-------------------------------------------------------------------------------------------------MNKTLERYEKCSY---AVQDTN-V-SNR--E--A-------QN-WHQEV-TKLKSKVEL--LQQSQ-----------------------------------RH-------------------------------LLGE------------DLG-PLS-VKELQQLERQL---EIALNHVRSRKSQVMMD-------------------------------------------------------------------------------------------------------LIDELRKK------ERLLQEV-------------NKSLHK--K-------LS-ES----------------------------EGRN--ATHDMRH-----------------------------------------------------P----------TDDNGPWNP-SV-NG----GYALP--STQ--QNTN---------LH-PVD------------------C--E----PTL-QIG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQSVPRESI------EPPQEQTHNQPQDNY-TGWW------V------------------------------------------------------------------   [252]
'gi|30678072|ref|NP 849930.1| AGL3 (AGAMOUS-LIKE 3); DNA binding / transcription factor [Arabidopsis thaliana] >gi|20465845|gb|A'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNR------G---KLYEFCSSPS------G-------------------------------------------------------------------------------------------------MARTVDKYRKHSY---ATMDPN-Q-SAK--D--L-------QD-KYQDY-LKLKSRVEI--LQHSQ-----------------------------------RH-------------------------------LLGE------------ELS-EMD-VNELEHLERQV---DASLRQIRSTKARSMLD-------------------------------------------------------------------------------------------------------QLSDLKTK------EEMLLET-------------NRDLRR--K-------LE-DS----------------------------DAAL--TQSFWGS-----------------------------------------------------S---------------AAEQQQQHQQQQQGMSSYQ--SNP--PIQE------AGF-FKPLQ--------------------GN----VAL-QMS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--YNHNPANAT-------NSA--TTSQNVNGFFPGWM------V------------------------------------------------------------------   [257]
lcl|O02g45770.1.72.m09614O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSR------G---KLYEFGS--A------G-------------------------------------------------------------------------------------------------ITKTLERYQHCCY---NAQDSN-N-ALS--E--T-------QS-WYHEM-SKLKAKFEA--LQRTQ-----------------------------------RH-------------------------------LLGE------------DLG-PLS-VKELQQLEKQL---ECALSQARQRKTQLMME-------------------------------------------------------------------------------------------------------QVEELRRK------ERQLGEI-------------NRQLKH--K-------LE--V----------------------------EG----------S-----------------------------------------------------T------SNYRAMQQASWAQGAVVEN----GAAY----VQ--PPPH---------SA-AMD------------------S--E----PTL-QIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-PHQFVPAEAN------TIQRSTAPAGAENNFMLGWV------L------------------------------------------------------------------   [250]
'gi|695686|emb|CAA56864.1| dal1 [Picea abies]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTR------G---KLYEFAS--S------S-------------------------------------------------------------------------------------------------MNKTLERYEKCSY---AMQDTTGV-SDR--E--A-------QN-WHQEV-TKLKGKVEL--LQRSQ-----------------------------------RH-------------------------------LLGE------------DLG-PLN-VKELQQLERQL---EVALAHLRSRKTQVMLD-------------------------------------------------------------------------------------------------------QIEELRQR------ERLLHEV-------------NKSLQK--K-------LS-ET----------------------------EGRD--VITGIEQ-----------------------------------------------------T------SNTNTGTNGPWDS-SITNT----AYALS--HPQ--QNSN-------ASLH-HVD------------------C--E----PTL-QIG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQPVPPESI------GPPHQPQHNQTQNQYMQGWW------V------------------------------------------------------------------   [261]
lcl|O06g06750.1.76.m05400O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTR------G---RLFEFSTS-S------C-------------------------------------------------------------------------------------------------MYKTLERYRSCNY---NLNSCEASAALE-----T-------ELSNYQEY-LKLKTRVEF--LQTTQ-----------------------------------RN-------------------------------LLGE------------DLV-PLS-LKELEQLENQI---EISLMNIRSSKNQQLLD-------------------------------------------------------------------------------------------------------QVFELKRK------EQQLQDA-------------NKDLKR--K-------IQ-ET----------------------------SGEN--MLHISCQ-----------------------------------------------------DVGPSGHAS---EANQEFLHHAICD--------------------------------------------------------------PSL-HIG---------------------------------------------------------------------------------------------------------------------------------YQAYMDHLNQ-----------------------------------------------------------------------------------------------------------------------------------------------------------   [225]
lcl|O03g11614.1.73.m06613O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGR------G---RLFEFSSS-S------C-------------------------------------------------------------------------------------------------MYKTLERYRSCNY---NSQDAA---APE-----N-------EI-NYQEY-LKLKTRVEF--LQTTQ-----------------------------------RN-------------------------------ILGE------------DLG-PLS-MKELEQLENQI---EVSLKQIRSRKNQALLD-------------------------------------------------------------------------------------------------------QLFDLKSK------EQQLQDL-------------NKDLRK--K-------LQ-ET----------------------------SAEN--VLHMSWQ-----------------------------------------------------DGGGHSGSSTVLADQPHHHQGLLHPHPDQGD--------------------------------------------------------HSL-QIG---------------------------------------------------------------------------------------------------------------------------------YH-------------------------------------------------------HPHAHHHQAYMDHLSNEAADMVAHHPNEHIPSGWI-------------------------------------------------------------------------   [257]
lcl|O04g49150.1.74.m09850O_unnamed_protein_product                                    -----------------------------------------------------------------------MDRSEM--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSR------G---KLYEFGS--A------G-------------------------------------------------------------------------------------------------INKTLEKYNSCCY---NAQGSN-S-ALAGGE--H-------QS-WYQEM-SRLKTKLEC--LQRSQ-----------------------------------RH-------------------------------MLGE------------DLG-PLS-IKELQQLEKQL---EYSLSQARQRKTQIMME-------------------------------------------------------------------------------------------------------QVDDLRRK------ERQLGEL-------------NKQLKN--K-------LE--A----------------------------EA----------D-----------------------------------------------------S------SNCRSAIQDSWVHGTVVSG----GRVL---NAQ--PPPD-------------ID------------------C--E----PTL-QIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y--YQFVRPEAA------NPRSNGGGGDQNNNFVMGWP------L------------------------------------------------------------------   [254]
'gi|7544096|dbj|BAA94287.1| pMADS4 [Petunia x hybrida]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSR------G---KLYEFGN--A------G-------------------------------------------------------------------------------------------------ITKTLERYQRCCL---NPQDNC---GER--E--T-------QS-WYQEV-SKLKGKFEA--LQRTQ-----------------------------------RH-------------------------------LLGE------------DLG-PLS-VKELQNLEKQL---EGALAQARQRKTQIMME-------------------------------------------------------------------------------------------------------QMEELRRK------ERHLGDV-------------NKQLKV--K-------VSLEL----------------------------SSLE--AEGQAGL---------------------------------------------------------------NRALPFLWTSNALEAG----NSNFPVHHSQ----------------SNPMD------------------CGPD----PVL-Q-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YRDHHYMAADGP---------SGSRSMAVETNIMQGWGL------------------------------------------------------------------------   [253]
lcl|O03g54170.1.73.m10383O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHA------G---RLYQFSSS-S------N-------------------------------------------------------------------------------------------------MLKTLERYQRYIY---ASQDAA-APTSD--E--M-------QN-NYQEY-VNLKAHVEI--LQQSQ-----------------------------------RN-------------------------------LLGE------------DLA-PLA-TNELEQLESQV---VRTLKQIRSRKTQVLLD-------------------------------------------------------------------------------------------------------ELCDLKRK------EQMLQDA-------------NRVLKR--K-------LD-EI----------------------------DVEA--APPQ-----------------------------------------------------------------------PPWNG-NCSNGHGGGGGVFS--SEP--PQPE---HFFQALGLHAVD------------------VNQP----P-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APPPGGYPPEWM------A------------------------------------------------------------------   [239]
'gi|5019456|emb|CAB44455.1| putative MADS domain transcription factor GGM9 [Gnetum gnemon]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTR------G---KLYEFAS--S------S-------------------------------------------------------------------------------------------------MSKTLERYEKCSY---SMQENA-S-TDR--D--A-------QN-WHHEV-TKLKAKLES--LHKAQ-----------------------------------RS-------------------------------LMGE------------DLG-PLN-IKELQSLEQQL---EVALGHVRNRKTQLLIQ-------------------------------------------------------------------------------------------------------TIDELRDK------ERTLQEV-------------NKSLQK--K-------LS-ET----------------------------EGRN--VIPALPH-----------------------------------------------------A------PN----GSGEWESSTLTTT----TYAL---QTQ--QTSN---------IH-HVD------------------C--E----PTL-HIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P-YHQAVHHEAI------TAP-PATHSEPHNQYI--WW------V------------------------------------------------------------------   [253]
'gi|15225532|ref|NP 182089.1| AGL6; DNA binding / transcription factor [Arabidopsis thaliana] >gi|2979564|gb|AAC06173.1| MADS-bo'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSR------G---KLYEFGS--V------G-------------------------------------------------------------------------------------------------IESTIERYNRCYN---CSLSNN--KPEE--T--T-------QS-WCQEV-TKLKSKYES--LVRTN-----------------------------------RN-------------------------------LLGE------------DLG-EMG-VKELQALERQL---EAALTATRQRKTQVMME-------------------------------------------------------------------------------------------------------EMEDLRKK------ERQLGDI-------------NKQLKI--K-------FE-TE----------------------------GHAF-------------------------------------------------------------------------KTFQDLWANSAASVAGDPNNSEFPVEPSH----------------PNVLD------------------CNTE----PFL-QIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FQQHYYVQGEGS--------SVSKSNVAGETNFVQGWVL------------------------------------------------------------------------   [252]
'gi|29372774|emb|CAD23441.1| putative MADS-domain transcription factor [Zea mays]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSTK------G---KLYEYSSH-S------S-------------------------------------------------------------------------------------------------MEGILERYQRYSF---EERAVL-NPSIE--D--Q-------AN-WGDEY-VRLKSKLDA--LQKSQ-----------------------------------RQ-------------------------------LLGE------------QLS-SLT-IKELQQLEQQL---DSSLKHIRSRKNQLMFD-------------------------------------------------------------------------------------------------------SISALQKK------EKALTDQ-------------NGVLQK--F-------ME-AE----------------------------KEKN--KALMNAQ-----------------------------------------------------LREQQNGASTSSPSLSPPIVPDSM---------------------------------------------------------------PTL-NIG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PCQHRGAAESESEPSPAPAQANRGNLPPWMLRTVK--------------------------------------------------------------------   [251]
'gi|15222220|ref|NP 177074.1| AP1 (APETALA1); DNA binding / transcription factor [Arabidopsis thaliana] >gi|6730649|gb|AAF27070.'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHK------G---KLFEYSTD-S------C-------------------------------------------------------------------------------------------------MEKILERYERYSY---AERQLI-APESD--V--N-------TN-WSMEY-NRLKAKIEL--LERNQ-----------------------------------RH-------------------------------YLGE------------DLQ-AMS-PKELQNLEQQL---DTALKHIRTRKNQLMYE-------------------------------------------------------------------------------------------------------SINELQKK------EKAIQEQ-------------NSMLSK--Q-------IK-ER----------------------------EKIL--RAQQEQW-----------------------------------------------------DQQNQGHNMPPPLPPQQHQIQHPYMLSHQP---------------------------------------------------------SPFLNMG---------------------------------------------------------------------------------------------------------------------------------GLYQEDDPMAMRRNDLELTLEPVYNCNLGCFAA------------------------------------------------------------------------------------------------------------------------------------   [256]
'gi|9367313|emb|CAB97354.1| MADS-box protein 8 [Hordeum vulgare subsp. vulgare]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPK------G---KLYEYATD-S------S-------------------------------------------------------------------------------------------------MDKILERYERYSY---AEKALI-SAESE--S--E-------GN-WCHEY-RKLKAKIET--IQKCH-----------------------------------KH-------------------------------LMGE------------DLD-SLN-LKELQQLEQQL---ESSLKHIRSRKSHLMME-------------------------------------------------------------------------------------------------------SISELQKK------ERSLQEE-------------NKALQK--E-------LV-ER----------------------------QKAA--SRQQQLQ-----------------------------------------------------QQQQQQQMQWEHQAQTQTHTHTQNQPQAQTSSSSS--SFMM-RDQQAHAPQQNICSYPPVTMG---GEATAAAAAPEQQAQLRI-CLPPW-MLS---------------------------------------------------------------------------------------------------------------------------------HLNA-----------------------------------------------------------------------------------------------------------------------------------------------------------------   [276]
lcl|O03g54160.2.73.m35583O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTK------G---KLYEYATD-S------C-------------------------------------------------------------------------------------------------MDKILERYERYSY---AEKVLI-SAESD--T--Q-------GN-WCHEY-RKLKAKVET--IQKCQ-----------------------------------KH-------------------------------LMGE------------DLE-SLN-LKELQQLEQQL---ENSLKHIRSRKSQLMLE-------------------------------------------------------------------------------------------------------SINELQRK------EKSLQEE-------------NKVLQK--E-------LV-EK----------------------------QKVQ--KQQVQWD-----------------------------------------------------------------------------QTQPQTSSSSS--SFMM----REALPTTNISNYPAAAGERIEDVAA-------GQPQHVRIGLPPW-MLS---------------------------------------------------------------------------------------------------------------------------------HING-----------------------------------------------------------------------------------------------------------------------------------------------------------------   [246]
lcl|O03g54160.1.73.m10381O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTK------G---KLYEYATD-S------C-------------------------------------------------------------------------------------------------MDKILERYERYSY---AEKVLI-SAESD--T--Q-------GN-WCHEY-RKLKAKVET--IQKCQ-----------------------------------KH-------------------------------LMGE------------DLE-SLN-LKELQQLEQQL---ENSLKHIRSRKSQLMLE-------------------------------------------------------------------------------------------------------SINELQRK------EKSLQEE-------------NKVLQK--ENPCSFLQLV-EK----------------------------QKVQ--KQQVQWD-----------------------------------------------------------------------------QTQPQTSSSSS--SFMM----REALPTTNISNYPAAAGERIEDVAA-------GQPQHVRIGLPPW-MLS---------------------------------------------------------------------------------------------------------------------------------HING-----------------------------------------------------------------------------------------------------------------------------------------------------------------   [253]
'gi|15233045|ref|NP 191671.1| AGL13 (AGAMOUS-LIKE 13); DNA binding / transcription factor [Arabidopsis thaliana] >gi|6850879|emb'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTG------G---KLYEFSN--V------G-------------------------------------------------------------------------------------------------VGRTIERYYRCKD---NLLDND---TLE--D--T-------QG-LRQEV-TKLKCKYES--LLRTH-----------------------------------RN-------------------------------LVGE------------DLE-GMS-IKELQTLERQL---EGALSATRKQKTQVMME-------------------------------------------------------------------------------------------------------QMEELRRK------ERELGDI-------------NNKLKL--E-------TE-DH----------------------------DFKG---------------------------------------------------------------------------FQDLLLNPVLTAG---CSTDFSLQSTHQNYISD---------------------------------CNLG----YFL-QIG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FQQHYEQGEGS------SVTKSNARSDAETNFVQ----------------------------------------------------------------------------   [244]
'gi|15231135|ref|NP 191437.1| SHP1 (SHATTERPROOF 1); DNA binding / transcription factor [Arabidopsis thaliana] >gi|52548102|gb|A'    -------------------------------------------------------------MEEGGSSHDAESSKKL--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTR------G---RLYEYAN--N------S-------------------------------------------------------------------------------------------------VRGTIERYKKACS---DAVNPP-SVTEA--N--T-------QY-YQQEA-SKLRRQIRD--IQNSN-----------------------------------RH-------------------------------IVGE------------SLG-SLN-FKELKNLEGRL---EKGISRVRSKKNELLVA-------------------------------------------------------------------------------------------------------EIEYMQKR------EMELQHN-------------NMYLRA--K-------IA-EG----------------------------ARLNPDQQESSVI-----------------------------------------------------QGTTVYESGVSSHDQSQ------------------------------HYNRNYIP-----VNLLEPNQQFSGQDQ------------PPL-QLV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [248]
'gi|16052|emb|CAA45228.1| SQUA [Antirrhinum majus]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVQLKRIENKINRQVTFSKRRGGLLKKAHELSVLCDAEVALIVFSNK------G---KLFEYSTD-S------C-------------------------------------------------------------------------------------------------MDRILEKYERYSF---AERQLV-SNEPQ--S--P-------AN-WTLEY-SKLKARIEL--LQRNH-----------------------------------RH-------------------------------YMGE------------DLD-SMS-LKEIQSLEQQL---DTALKNIRTRKNQLLYD-------------------------------------------------------------------------------------------------------SISELQHK------EKAIQEQ-------------NTMLAK--K-------IK-EK----------------------------EKEI--AQQPQWE-----------------------------------------------------HHRHHTNASIMPPPPQYSMAPQ-----------------------------------------------------------------FPCINVG---------------------------------------------------------------------------------------------------------------------------------NTYEGEGANEDRRNELDLTLDSLYSCHLGCFAA------------------------------------------------------------------------------------------------------------------------------------   [248]
'gi|18395839|ref|NP 564243.1| CAL (CAULIFLOWER); DNA binding / transcription factor [Arabidopsis thaliana]'                          ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHK------G---KLFEYSSE-S------C-------------------------------------------------------------------------------------------------MEKVLERYERYSY---AERQLI-APDSH--VNAQ-------TN-WSMEY-SRLKAKIEL--LERNQ-----------------------------------RH-------------------------------YLGE------------ELE-PMS-LKDLQNLEQQL---ETALKHIRSRKNQLMNE-------------------------------------------------------------------------------------------------------SLNHLQRK------EKEIQEE-------------NSMLTK--Q-------IK-ER----------------------------ENIL--RTKQTQC-----------------------------------------------------EQLNRSVDDVPQPQPFQH--PHLYMIAHQT---------------------------------------------------------SPFLNMG---------------------------------------------------------------------------------------------------------------------------------GLYQEEDQTAMRRNNLDLTLEPIYN-YLGCYAA------------------------------------------------------------------------------------------------------------------------------------   [255]
lcl|O07g41370.1.77.m08373O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTK------G---KLYEFSSH-S------S-------------------------------------------------------------------------------------------------MEGILERYQRYSF---DERAVL-EPNTE--D--Q-------EN-WGDEY-GILKSKLDA--LQKSQ-----------------------------------RQ-------------------------------LLGE------------QLD-TLT-IKELQQLEHQL---EYSLKHIRSKKNQLLFE-------------------------------------------------------------------------------------------------------SISELQKK------EKSLKNQ-------------NNVLQK--L-------ME-TE----------------------------KEKN--NAIINTN------------------------------------------------------REEQNGATPSTSSPTPVTAPDPI---------------------------------------------------------------PTT-NNS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QSQPRGSGESEAQPS--PAQAGNSKLPPWMLRTSHT-------------------------------------------------------------------   [249]
lcl|O07g01820.3.77.m04660O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPK------G---KLYEYATD-S------R-------------------------------------------------------------------------------------------------MDKILERYERYSY---AEKALI-SAESE--S--E-------GN-WCHEY-RKLKAKIET--IQKCH-----------------------------------KH-------------------------------LMGE------------DLE-SLN-LKELQQLEQQL---ESSLKHIISRKSHLMLE-------------------------------------------------------------------------------------------------------SISELQKK------ERSLQEE-------------NKALQK--E-------LV-ER----------------------------QKNV--RGQQQVG-----------------------------------------------------QWD-----------QTQVQAQAQAQPQAQTSSSSS--SML--RDQQALLPPQNIC-YPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPW-MLS---------------------------------------------------------------------------------------------------------------------------------HLNA-----------------------------------------------------------------------------------------------------------------------------------------------------------------   [267]
lcl|O07g01820.2.77.m29040O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPK------G---KLYEYATD-S------R-------------------------------------------------------------------------------------------------MDKILERYERYSY---AEKALI-SAESE--S--E-------GN-WCHEY-RKLKAKIET--IQKCH-----------------------------------KH-------------------------------LMGE------------DLE-SLN-LKELQQLEQQL---ESSLKHIISRKSHLMLE-------------------------------------------------------------------------------------------------------SISELQKK------ERSLQEE-------------NKALQK--E-------LV-ER----------------------------QKNV--RGQQQVG-----------------------------------------------------QWD-----------QTQVQAQAQAQPQAQTSSSSS--SML--RDQQALLPPQNICSYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPW-MLS---------------------------------------------------------------------------------------------------------------------------------HLNA-----------------------------------------------------------------------------------------------------------------------------------------------------------------   [268]
lcl|O07g01820.4.77.m29039O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPK------G---KLYEYATD-S------R-------------------------------------------------------------------------------------------------MDKILERYERYSY---AEKALI-SAESE--S--E-------GN-WCHEY-RKLKAKIET--IQKCH-----------------------------------KH-------------------------------LMGE------------DLE-SLN-LKELQQLEQQL---ESSLKHIISRKSHLMLE-------------------------------------------------------------------------------------------------------SISELQKK------ERSLQEE-------------NKALQK--E-------CA-HA----------------------------AGGE--AEECEGP-----------------------------------------------------AASRAVGPNPGP------------GPGPSPTPSPD--KLLLLLHAEGSAGTSSTTKYLLPAGDDGREK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [240]
'gi|18424410|ref|NP 568929.1| AGL8 (AGAMOUS-LIKE 8); transcription factor [Arabidopsis thaliana] >gi|18377424|gb|AAL66878.1| flo'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSK------G---KLFEYSTD-S------C-------------------------------------------------------------------------------------------------MERILERYDRYLY---SDKQLV-GRDVS--Q--S-------EN-WVLEH-AKLKARVEV--LEKNK-----------------------------------RN-------------------------------FMGE------------DLD-SLS-LKELQSLEHQL---DAAIKSIRSRKNQAMFE-------------------------------------------------------------------------------------------------------SISALQKK------DKALQDH-------------NNSLLK--K-------IK-ER----------------------------EKKT--GQQEGQL-----------------------------------------------------VQCSNSSSVLLPQYCVTSSRDGFVERVGGENGGAS--SLTEPNSLLPAWMLRPTTTNE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [242]
'gi|2981612|dbj|BAA25246.1| transcription factor [Ceratopteris richardii]'                                    MAMPCSDIDLLDSDNDNVDDQHISLELRQVHEDTDDGSHDEPRELSLLNHESNLCKIVNSKGKGAEAGNSLLPSTGT--------------------------------------------------------------------------------------------------------------------------------S-------------------RGKIQIRRIENTTSRQVTFSKRRNGLLKKAHELSVLCDAEIALIIFSST------G---KLFEYSSS-R------G-------------------------------------------------------------------------------------------------IKKILERYKRCSG---ILQDVG-GTVIR--D--V-------EY-WKQEA-ERLKERLTY--MEEIQ-----------------------------------RN-------------------------------MLGE------------SLG-SLQ-IKDLQNLEAKL---DSGLYKIRGAKTQLMAR-------------------------------------------------------------------------------------------------------QVQELQKK------EQILLQQ-------------NEALRA--K-------LA-EL----------------------------SCLQ--APVSGLT-----------------------------------------------------TATTSQDVQESSSGRGSRQRETSLSAAE-----------------------------------------------------------TTL-QLA---------------------------------------------------------------------------------------------------------------------------------SHNEQTFLLRAVPHMRL----------------------------------------------------------------------------------------------------------------------------------------------------   [313]
'gi|42565295|ref|NP 189645.2| DNA binding / transcription factor [Arabidopsis thaliana] >gi|32402440|gb|AAN52802.1| MADS-box pro'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVQLRRIENKIRRQVTFSKRRTGLVKKAQEISVLCDAEVALIVFSPK------G---KLFEYSAG-S------S-------------------------------------------------------------------------------------------------MERILDRYERSAY---AGQDIP-TPNLD--S--Q-------GE-CSTEC-SKLLRMIDV--LQRSL-----------------------------------RH-------------------------------LRGE------------EVD-GLS-IRDLQGVEMQL---DTALKKTRSRKNQLMVE-------------------------------------------------------------------------------------------------------SIAQLQKK------EKELKEL-------------KKQLTK--K-------AG-ER----------------------------EDFQ--TQNLSHD-----------------------------------------------------LASLATPPFESPHELRRTISPPPPPLSSGDTSQRDGVGEVAAGTLIRRTNATLPHWMPQLTGE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [249]
lcl|Ppa_PpMADS6_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENPTSRQVTFSKRRGGLLKKAHELAVLCDAEVALIIFSST------G---KLFEFASS-G------S-------------------------------------------------------------------------------------------------MRDILERYSKCPD---GVQTDG--------N--S-------DF-MGREV-VKLRQQLER--LQHSQ-----------------------------------RH-------------------------------MLGE------------DLQ-VLT-VPDLLQLEQQL---DMGVSRVRARKNQLLLE-------------------------------------------------------------------------------------------------------EVEELRRK------EHDLQAA-------------NEELRQ--K-------LA-DA----------------------------KGML--TLEAGTA-----------------------------------------------------RAGTSESPGDQGGSWPTREVGGITQHQAITTFPAH--LNLRDP------------------------------------QTSQ----TSL-HLG---------------------------------------------------------------------------------------------------------------------------------LFPKSHMPSASRRPSQQSPTEPEGESSMRWEHPHFRSQK------------------------------------------------------------------------------------------------------------------------------   [271]
lcl|Ppa_PpMADS5_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENPASRQVTFSKRRGGLLKKAHELAVLCDADVALIIFSST------G---KLFEFASS-G------S-------------------------------------------------------------------------------------------------MRDILERYSKCPD---GSQTGV--------N--S-------DF-LGREV-VKLRQELER--LQHSQ-----------------------------------RH-------------------------------MLGE------------DLQ-VLT-VPDLLQLEQQL---DMGASRVRARKNQLLLE-------------------------------------------------------------------------------------------------------EIEELRRK------EHDLHAV-------------NEELRQ--R-------LA-DV----------------------------KGML--SLEAGPA-----------------------------------------------------RAATSGSPGGQGVSAPTHEVGGSSQQQAVTVYPTR--INLRDP------------------------------------QTSQ----TSL-HLG---------------------------------------------------------------------------------------------------------------------------------LFPESFMPSTSRRPSQQSPTEPEGESSMRWEHSHYRSQK------------------------------------------------------------------------------------------------------------------------------   [271]
'gi|21396795|gb|AAM51776.1| MADS-box gene 2 protein [Lycopodium annotinum]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATSRQVTFSKRRGGLLKKAHELSVLCDAQVALIIFSST------G---KLFEYAS--P------S-------------------------------------------------------------------------------------------------MKEILDRYGKYPE---GVQTGTVTDPNN--DVML-------QY-LNREV-IRMKQQIER--THQTQ-----------------------------------RH-------------------------------MMGE------------DLA-ILP-LKDLQQLEEQL---DIGLRRIRARKDQLLVE-------------------------------------------------------------------------------------------------------QLEELHRK------ERHWLEE-------------NEALRR--K-------LA-GG----------------------------QALS--GPVPSPL-----------------------------------------------------SIV----NPLETREPPSLGTVSLPFSVQFNQQNMQ--DT----------------------------------------PNLQ----TSL-QLG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [231]
'gi|22090618|dbj|BAC06829.1| MADS-box protein PpMADS1 [Physcomitrella patens subsp. patens]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENTTSRQVTFSKRRGGLLKKAHELAVLCDAEVALVIFSST------G---KHFEFASS-G------S-------------------------------------------------------------------------------------------------MRDIIERYRKSSD---GAVKRG-----T--N--T-------DL-LGREV-IKLKQQVER--LESSQ-----------------------------------RH-------------------------------MLGE------------DLS-ALK-VSDLLELEQQL---DQGASRVRARKNQLILE-------------------------------------------------------------------------------------------------------EIEDLRRK------EHELMIA-------------NEALRK--K-------IA-DA----------------------------EGAA--EAAARAN-----------------------------------------------------FPDARLESPKPFASDFSRDMSVSS-QLAASVY-PH--PNLLQA------------------------------------QRSQ----TSL-QLG---------------------------------------------------------------------------------------------------------------------------------WLSEQQIPSTE-------------EGCAGESSLKWDHPHFHIQNRLHANISPSVRTYKLHVDR------------------------------------------------------------------------------------------------------   [281]
'gi|61970255|gb|AAG09136.2| MADS-domain protein PPM1 [Physcomitrella patens]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENTTSRQVTFSKRRGGLLKKAHELAVLCDAEVALVIFSST------G---KLFEYASS-G------S-------------------------------------------------------------------------------------------------MRDIIERYKKSPN---GAMKSG-----A--S--T-------DF-LGREV-LKLQEQVER--LKSSQ-----------------------------------RR-------------------------------MLGE------------DLS-ALK-VPDLLQLEQQL---DLGASRVRARKNQLILE-------------------------------------------------------------------------------------------------------EIEGLQKK------EQELMVA-------------NEDLRK--K-------IA-DA----------------------------EAVA--RANLSEA---------------------------------------------------------RPESPRHLARTLSRDVSASS-HPAATVY-PH--PNLRDV------------------------------------QRSQ----TSL-QLG---------------------------------------------------------------------------------------------------------------------------------MFSSESYPPSSSRWPSEQQFPSASEGCAGESSMKWDHPHYHIQNRLHANILPSVRI-------------------------------------------------------------------------------------------------------------   [283]
lcl|O12g10540.3.82.m26742O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR------G---RLYEYSN-NN------N-------------------------------------------------------------------------------------------------VKATIDRYKKAHA---CGSTSGAPLIEV--N--A---Q---QY-YQQES-AKLRHQIQM--LQNTN-----------------------------------KH-------------------------------LVGD------------NVS-NLS-LKELKQLESRL---EKGISKIRARKNELLAS-------------------------------------------------------------------------------------------------------EINYMAKR------EIELQND-------------NMDLRT--K-------IA-EE----------------------------EQQL--QQVTVAR-----------------------------------------------------SAAMELQAAAAAQQQQQNPFAVAAAQ---------------------LDMKCFFP-----LNLFEAAAQ-VQAVAAQRQQIIP----TEL-NLG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHHHLAIPGAAAADAPPPHF-------------------------------------------------------------------------------------------   [270]
lcl|O12g10540.2.82.m26741O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR------G---RLYEYSN-NN------N-------------------------------------------------------------------------------------------------VKATIDRYKKAHA---CGSTSGAPLIEV--N--A---Q---QY-YQQES-AKLRHQIQM--LQNTN-----------------------------------KH-------------------------------LVGD------------NVS-NLS-LKELKQLESRL---EKGISKIRARKNELLAS-------------------------------------------------------------------------------------------------------EINYMAKR------EIELQND-------------NMDLRT--K-------IA-EE----------------------------EQQL--QQVTVAR-----------------------------------------------------SAAMELQAAAAAQQQQQNPFAVAAAQ---------------------LDMKCFFP-----LNLFEAAAQ-VQAVAAQRQQIIP----TEL-NLG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHHHLAIPGAAAADAPPPHF-------------------------------------------------------------------------------------------   [270]
lcl|O12g10540.1.82.m05036O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR------G---RLYEYSN-NN------N-------------------------------------------------------------------------------------------------VKATIDRYKKAHA---CGSTSGAPLIEV--N--A---Q---QY-YQQES-AKLRHQIQM--LQNTN-----------------------------------KH-------------------------------LVGD------------NVS-NLS-LKELKQLESRL---EKGISKIRARKNELLAS-------------------------------------------------------------------------------------------------------EINYMAKR------EIELQND-------------NMDLRT--K-------IA-EE----------------------------EQQL--QQVTVAR-----------------------------------------------------SAAMELQAAAAAQQQQQNPFAVAAAQ---------------------LDMKCFFP-----LNLFEAAAQ-VQAVAAQRQQIIP----TEL-NLG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHHHLAIPGAAAADAPPPHF-------------------------------------------------------------------------------------------   [270]
'gi|21396803|gb|AAM51780.1| MADS-box gene 6 protein [Lycopodium annotinum]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENSTSRQVTFSKRRGGLLKKAHELAVLCDAQVALIIFSNT------G---KLFEYAS--T------S-------------------------------------------------------------------------------------------------MKEILDRYRKYPD---GIQTGRVMEYDN--DVMV-------QH-WSREV-MRMKQQIER--SYQTQ-----------------------------------RH-------------------------------MMGE------------DLG-LLP-LKELQHLEQQL---DTGLNRVRARKDQVLRE-------------------------------------------------------------------------------------------------------QIDSLRIK------ELQWHEE-------------NEILRR--K-------IA-GA----------------------------HGMT--EVAVRSF-----------------------------------------------------SSQNIV-NPLETREPPSIGQVSVPFSLHVNQKNLR--EN----------------------------------------QNLQ----TSL-QLG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [234]
lcl|O01g66290.2.71.m42780O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSR------G---RLYEFSNV-N------S-------------------------------------------------------------------------------------------------TRSTIERYKKASA---STSGSA-PVIDV--N--S------HQY-FQQEA-AKMRHQIQT--LQNAN-----------------------------------RH-------------------------------LIGE------------SIG-NMT-AKELKSLENRL---EKGISRIRSKKHELLFS-------------------------------------------------------------------------------------------------------EIEYMQKR------EADLQNE-------------NMFLRA--K-------VA-EA----------------------------ERAE--HDDQQAA-----------------------------------------------------EDDEMAPAPAVGGGSSSGTELEALPAT--------------------FDTREYYQPAPPVSMLAAAAAAAAAQYSSDHHQ-------TAL-HLG---------------------------------------------------------------------------------------------------------------------------------YFKVDSGKGGLL---------------------------------------------------------------------------------------------------------------------------------------------------------   [265]
lcl|O01g66290.1.71.m12737O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSR------G---RLYEFSNV-N------S-------------------------------------------------------------------------------------------------TRSTIERYKKASA---STSGSA-PVIDV--N--S------HQY-FQQEA-AKMRHQIQT--LQNAN-----------------------------------RH-------------------------------LIGE------------SIG-NMT-AKELKSLENRL---EKGISRIRSKKHELLFS-------------------------------------------------------------------------------------------------------EIEYMQKR------EADLQNE-------------NMFLRA--K-------VA-EA----------------------------ERAE--HDDQQAA-----------------------------------------------------EDDEMAPAPAVGGGSSSGTELEALPAT--------------------FDTREYYQPAPPVSMLAAAAAAAAAQYSSDHHQ-------TAL-HLG---------------------------------------------------------------------------------------------------------------------------------YFKVDSGKGGLL---------------------------------------------------------------------------------------------------------------------------------------------------------   [265]
'gi|6468290|emb|CAB44456.2| putative MADS domain transcription factor GGM10 [Gnetum gnemon]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDAEVALIIFSSR------G---KLYELATSNK------S-------------------------------------------------------------------------------------------------MMSTLERYQRSSA---TGKQLN-LYPGS--S--N-------EK-LDLEV-KFLRNQVEQ--LKATN-----------------------------------RY-------------------------------LMGE------------ELA-TMS-LDELNELEAQL---QKGINQVRAKKTDLMLE-------------------------------------------------------------------------------------------------------EIKALQNK------EHILRMS-------------NIMLQG--K-------LD-EC----------------------------TNCK--DSRFHGF-----------------------------------------------------ITTSSTSHAPAYTCGFNLNNQSLSSTIEM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [216]
lcl|Smo_SrMADS1_10_1_unnamed_protein_product                                    ---------------------------------MESEGLSLGTSSSSAAQQQEHHQQASSAKSPQEKRSDHQQQPSV--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATSRQVTFSKRRGGLLKKAHELSVLCDAQVALIIFSST------G---KLFEYAS--T------S-------------------------------------------------------------------------------------------------MKEILDRYGKYPE---SVQGGNIASQHH--D--S-------DY-FSREV-IRLKQQLER--SQQTQ-----------------------------------RH-------------------------------LLGD------------DLA-HLA-LKDLQSLEQQL---ELGLNRIRSRKEQVFLD-------------------------------------------------------------------------------------------------------EIEDLRRR------ELQLHKE-------------NEMLRR--R-------VM-QC----------------------------PSTL--FCFLNHT-----------------------------------------------------RKNPASFAACRPCAGKRQPTGDKGTSKLRKCVLVLVFEQI-----------------------------------------------TATTQAA---------------------------------------------------------------------------------------------------------------------------------AAAAAEAGSAAGNFAANADSYPEAAAAAAAEQLERPKPSDLITAWRVFYRKLRSREFSVQLMFSIKWIE?-----------------------------------------------------------------------------------------------   [346]
lcl|Ppa_PpMADSS_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENPTSRQVTFSKRRGGLLKKAHELAVLCDAEVALIIFSST------G---KLFEFASS-G------S-------------------------------------------------------------------------------------------------MRDILERYSKCPD---GVQTTG--------N--V-------DF-MGREV-VKLRQQLER--MQHSQ-----------------------------------RQ-------------------------------MLGE------------DLQ-VLT-VSDLLQLEQQL---DVGASRVRARKNQLLLE-------------------------------------------------------------------------------------------------------EIEQLRQK------ELDLQAE-------------NEDLRK--K-------LA-HV----------------------------KETA--EVSGHTG-----------------------------------------------------TS----ESPSQVASASAYETGGIS-AQVTMVYPTH--PNLRDP------------------------------------QTSQ----TSL-HLG---------------------------------------------------------------------------------------------------------------------------------LFPESFVPNTSRRPSQRSPTDPEGESSIRWERYRGQE--------------------------------------------------------------------------------------------------------------------------------   [264]
'gi|62122343|dbj|BAD93166.1| MADS-box transcription factor GbMADS2 [Ginkgo biloba]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEMKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR------G---RLYEFAN--N------S-------------------------------------------------------------------------------------------------VKRTIDRYKKTCA---DNSHGG-AISEC--N--S-------QY-WQQEA-GKLRQQIDI--LQNAN-----------------------------------RH-------------------------------LMGD------------ALT-SLS-VKELKQLEIRL---ERGISRVRSKKNEMLLE-------------------------------------------------------------------------------------------------------EIEIMQRR------EHILLAE-------------NQFLRT--K-------IA-EC----------------------------ESSQ--NANML-------------------------------------------------------PGPEFDALPG-------------------------------------FDSRHFLH-----ASIMDA----HHYAQQDQ---------TAL-QLG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [221]
'gi|5019431|emb|CAB44449.1| putative MADS domain transcription factor GGM3 [Gnetum gnemon]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR------G---RLYEFAN--N------S-------------------------------------------------------------------------------------------------VKRTIERYRKTCA---DNNQGG-AIAES--N--A-------QY-WQQEA-VKLKQQIDV--LNNQI-----------------------------------RH-------------------------------YMGE------------CLQ-SMT-IKELKQLEGKL---EKGLGRVRSKRNEKLLE-------------------------------------------------------------------------------------------------------DIDTLQRR------EDNLIRE-------------NEYIRN--K-------IA-EC----------------------------QSHQ--HANMLTA-----------------------------------------------------AAVEYDAIPAA------------------------------------YDSRNFMH-----ANLIEAAAAHHHYAQQEQ---------TAL-HLG---------------------------------------------------------------------------------------------------------------------------------SEHKYSVHYPDPQAHKFQT--------------------------------------------------------------------------------------------------------------------------------------------------   [247]
'gi|6468286|emb|CAB44447.2| putative MADS domain transcription factor GGM1 [Gnetum gnemon]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKTQMKRIENATSRQVTFSKRRNGLLKKAYELSILCDAEVGLIIFSPR------G---KLYEFAN--P------S-------------------------------------------------------------------------------------------------MQKMLDRYQKCCQ---ESTANTSKNLVE--D--T-------QH-LKREV-AIMEEKIKM--LEYAQ-----------------------------------KK-------------------------------LLGE------------NLE-SLS-MKELTQLENQA---ERGLVNIRARKTEILMD-------------------------------------------------------------------------------------------------------QINQLKRK------SQLLGEE-------------NAVLRK--K-------CN-GP----------------------------YMGG--GLLSILH-----------------------------------------------------AGASGAGP?NNNNNNGGSGVTHHDDNNNNNRSNNV--NV----------------------------------------EDVE----TQL-NIG---------------------------------------------------------------------------------------------------------------------------------PPDVHCSINQC----------------------------------------------------------------------------------------------------------------------------------------------------------   [244]
'gi|15234874|ref|NP 192734.1| STK (SEEDSTICK); transcription factor [Arabidopsis thaliana] >gi|7267692|emb|CAB78119.1| MADS-box'     ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTR------G---RLYEYAN--N------N-------------------------------------------------------------------------------------------------IRSTIERYKKACS---DSTNTS-TVQEI--N--A-------AY-YQQES-AKLRQQIQT--IQNSN-----------------------------------RN-------------------------------LMGD------------SLS-SLS-VKELKQVENRL---EKAISRIRSKKHELLLV-------------------------------------------------------------------------------------------------------EIENAQKR------EIELDNE-------------NIYLRT--K-------VA-EV----------------------------ERYQ--QHHHQMV-----------------------------------------------------SGSEINAIEA-------------------------------------LASRNYFA-----HSIMTAGSGSGNGGSYSDPDK------KIL-HLG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [230]
'gi|42566942|ref|NP 567569.3| AG (AGAMOUS); transcription factor [Arabidopsis thaliana]'                                    ------------------------------------------------------------TAYQSELGGDSSPLRKS--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR------G---RLYEYSN--N------S-------------------------------------------------------------------------------------------------VKGTIERYKKAIS---DNSNTG-SVAEI--N--A-------QY-YQQES-AKLRQQIIS--IQNSN-----------------------------------RQ-------------------------------LMGE------------TIG-SMS-PKELRNLEGRL---ERSITRIRSKKNELLFS-------------------------------------------------------------------------------------------------------EIDYMQKR------EVDLHND-------------NQILRA--K-------IA-EN----------------------------ERNN--PSISLMP-----------------------------------------------------GGSNYEQLMPPPQTQSQP-----------------------------FDSRNYFQ-----VAALQPNNHHYSSAGRQDQ--------TAL-QLV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [252]
'gi|29467138|dbj|BAC67017.1| MADS-box transcription factor SrMADS1 [Selaginella remotifolia]'                                    ----------------------------------ETWLVTTTSSSNPEVGLATGLAATGGAQDLLNPPLNKQKEPPV--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATSRQVTFSKRRGGLLKKAHELSVLCDAQVALIIFSST------G---KLFEYAS--T------S-------------------------------------------------------------------------------------------------MKEILDRYGKYPE---SVQGGNMASHHE--A--S-------DF-ISHEI-RRLKQQLQR--SQQSR-----------------------------------RH-------------------------------LLGD------------DLS-HLP-IKDLQNLEQQL---EVGLSRVRSRKDQVLMD-------------------------------------------------------------------------------------------------------QVDELRRR------ELTLHKD-------------NEMLRR--R-------LS-DV----------------------------QGMA--ESGRSTLIVNPWRQGNLLQTWQMYPCHFLDTKAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [256]
'gi|62122345|dbj|BAD93167.1| MADS-box transcription factor GbMADS3 [Ginkgo biloba]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKTQMKRNENATSRQVTFSKRRNGLLKKAYEFSVLCDAEVGLIIFSPR------G---KLYEFAS--A------S-------------------------------------------------------------------------------------------------MQKMLERYQKYSD---DMNANK-KTNEQ--D--A-------QH-WKEEI-ENMGQRIEI--LEATQ-----------------------------------RQ-------------------------------MLGE------------CLA-SCS-MKELNHLENQV---ERGLNHIRARKTEILME-------------------------------------------------------------------------------------------------------QIEQLKRK------ERFLTEE-------------NAILRQ--K-------CI-QP----------------------------HYAD--ASISTTP-----------------------------------------------------TIGYGSIQHPEVE--------------------------------------------------------------------------TQL-LMR---------------------------------------------------------------------------------------------------------------------------------PPEVQDHIQLKGSN-------------------------------------------------------------------------------------------------------------------------------------------------------   [218]
'gi|62122359|dbj|BAD93174.1| MADS-box transcription factor GbMADS10 [Ginkgo biloba]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSST------G---KLFEYSSATS------S-------------------------------------------------------------------------------------------------MRKIIERYQKVSG---ARLSEF--------D--N-------QH-LFCEM-TRIKNENEK--LQTSI-----------------------------------RH-------------------------------MLGE------------DLT-SLT-MTELHHLEQQL---EVAANRVRTRKNQLMLQ-------------------------------------------------------------------------------------------------------QLDNLRRK------ERLLEEQ-------------NSHLCR--L-------LA-EH----------------------------QAAV--EGVVAEP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIDFGVFCQ--------SEARNPLHLTAQSMQGFRLQPTQPNLQESGMQRPALQL-------------------------------------------------------------------------   [229]
'gi|22474453|emb|CAD11674.1| putative MADS-domain transcription factor [Physcomitrella patens] >gi|9956942|gb|AAG09137.1| MADS-d'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENTTSRQVTFSKRRGGLLKKAHELAVLCDAEVALVIFSST------G---KLFEYASS-G------S-------------------------------------------------------------------------------------------------IRDIIDRYKKGSD---GMQNGA--------R--N-------DF-MGCEV-VKLREQLEQ--LKASH-----------------------------------RH-------------------------------MLGE------------DLS-LLK-VPDLLQLEQQL---DLGASRVRARKNQLILE-------------------------------------------------------------------------------------------------------EVESLRRK------EHELLIA-------------NEDLRQ--K-------LA-DA----------------------------QGIA--DAVTARA-----------------------------------------------------NVS---ESPRPLTSALTRDIVMSSQQQEVTVH-PH--PNLRDA------------------------------------QRSQ----TSL-QLG---------------------------------------------------------------------------------------------------------------------------------MFSSESYLPSSSRGPSEHPIPVGPEGCAGESAMRWEHPHFHSQNRLHANISPSVRI-------------------------------------------------------------------------------------------------------------   [284]
'gi|15234342|ref|NP 192925.1| AGL14 (AGAMOUS-LIKE 14); DNA binding / transcription factor [Arabidopsis thaliana] >gi|7267888|emb'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPR------G---KLYEFSSS-S------S-------------------------------------------------------------------------------------------------IPKTVERYQKRIQ---DLGSNH--KRND--N--S-------QQ-SKDET-YGLARKIEH--LEIST-----------------------------------RK-------------------------------MMGE------------GLD-ASS-IEELQQLENQL---DRSLMKIRAKKYQLLRE-------------------------------------------------------------------------------------------------------ETEKLKEK------ERNLIAE-------------NKMLME--K-------CE-MQ----------------------------GRGI--IGRISSS-----------------------------------------------------SSTSELDIDDNEMEVV-----------------------------------------------------------------------TDL-FIG---------------------------------------------------------------------------------------------------------------------------------PPETRHFKKFPPSN-------------------------------------------------------------------------------------------------------------------------------------------------------   [221]
'gi|5019464|emb|CAB44459.1| putative MADS domain transcription factor GGM13 [Gnetum gnemon] >gi|27151621|sp|Q9XGJ4|GGM13 GNEGN M'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSS------G---KLFEYSSASS------S-------------------------------------------------------------------------------------------------MKKIIERYQKVSG---ARITEY--------D--N-------QH-LYCEM-TRMKNENEK--LQTNI-----------------------------------RR-------------------------------MMGE------------DLT-SLT-MTELHHLGQQL---ESASSRVRSRKNQLMLQ-------------------------------------------------------------------------------------------------------QLENLRRK------ERILEDQ-------------NSHLCR--L-------LA-EQ----------------------------QAAV--EG-VQEP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLEFGVFCPPPDNKTAAAANAGPLHLG-HHLPAFRLQPTQPNLQESSIVPNRPVLQL-----------------------------------------------------------------------   [237]
'gi|62132641|gb|AAX69070.1| MADS box protein M8 [Pisum sativum]'                                    -------------------------------------------------------------MELPNEGGEGSSQKKL--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTR------G---RLYEYAN--N------S-------------------------------------------------------------------------------------------------VRATIERYKKACA---ASTNAE-SVSEA--N--T-------QF-YQQES-SKLRRQIRD--IQNLN-----------------------------------RH-------------------------------ILGE------------ALG-SLS-LKELKNLEGRL---EKGLSRVRSRKHETLFA-------------------------------------------------------------------------------------------------------DVEFMQKR------EIELQNH-------------NNYLRA--K-------IA-EH----------------------------ERAQ--QQQQNLM-----------------------------------------------------PETMCESLPSQ------------------------------------TYDRNFFP-----VNLLGSDQQEYSRQDQ-----------TAL-QLV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [241]
lcl|O10g39130.1.80.m06683O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPR------G---RLYEFASA-P------S-------------------------------------------------------------------------------------------------LQKTIDRYKAYTK---DHVNNK--TIQQ--D--I-------QQ-VKDDT-LGLAKKLEA--LDESR-----------------------------------RK-------------------------------ILGE------------NLE-GFS-IEELRGLEMKL---EKSLHKIRLKKTELLEQ-------------------------------------------------------------------------------------------------------QIAKLKEK------ERTLLKD-------------NENLRG--K-------HR-NL----------------------------EAAA--LVANHMT-----------------------------------------------------TTTAPAAWPRDVPMTSSTAGAADAMDVE-----------------------------------------------------------TDL-YIG---------------------------------------------------------------------------------------------------------------------------------LPGTERSSNRSETG-------------------------------------------------------------------------------------------------------------------------------------------------------   [233]
lcl|O05g11414.3.75.m05610O_unnamed_protein_product                                    ----------------------------------MHIYKEQEAEPSTGLMMPEPAPVASPGSGGSGGSGSVGAEKIG--------------------------------------------------------------------------------------------------------------------------------S-------------------RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSR------G---RLYEYSN--N------S-------------------------------------------------------------------------------------------------VKETIERYKKANS---DTSNAS-TVAEI--N--A-------QH-YQQEA-AKLKQQITN--LQNSN-----------------------------------RT-------------------------------LVGD------------NIT-TMN-HRELKQLEGRL---DKGLGKIRARKNELLCA-------------------------------------------------------------------------------------------------------EIEYMQRR------ETELQND-------------NMYLKS--K-------VA-ES----------------------------ERGL--QTVNMMG-----------------------------------------------------SASTSE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [233]
lcl|O05g11414.2.75.m28039O_unnamed_protein_product                                    ----------------------------------MHIYKEQEAEPSTGLMMPEPAPVASPGSGGSGGSGSVGAEKIG--------------------------------------------------------------------------------------------------------------------------------S-------------------RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSR------G---RLYEYSN--N------S-------------------------------------------------------------------------------------------------VKETIERYKKANS---DTSNAS-TVAEI--N--A-------QH-YQQEA-AKLKQQITN--LQNSN-----------------------------------RT-------------------------------LVGD------------NIT-TMN-HRELKQLEGRL---DKGLGKIRARKNELLCA-------------------------------------------------------------------------------------------------------EIEYMQRR------ETELQND-------------NMYLKS--K-------VA-ES----------------------------ERGL--QTVNMMG-----------------------------------------------------SASTSEYVQNMIH----------------------------------YDPRNFLQ-----FNIMHQPQYYPEQEDR-----------KAF-MSD---------------------------------------------------------------------------------------------------------------------------------ER-------------------------------------------------------------------------------------------------------------------------------------------------------------------   [272]
lcl|O05g11414.1.75.m28040O_unnamed_protein_product                                    ----------------------------------MHIYKEQEAEPSTGLMMPEPAPVASPGSGGSGGSGSVGAEKIG--------------------------------------------------------------------------------------------------------------------------------S-------------------RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSR------G---RLYEYSN--N------S-------------------------------------------------------------------------------------------------VKETIERYKKANS---DTSNAS-TVAEI--N--A-------QH-YQQEA-AKLKQQITN--LQNSN-----------------------------------RT-------------------------------LVGD------------NIT-TMN-HRELKQLEGRL---DKGLGKIRARKNELLCA-------------------------------------------------------------------------------------------------------EIEYMQRR------ETELQND-------------NMYLKS--K-------VA-ES----------------------------ERGL--QTVNMMG-----------------------------------------------------SASTSEYVQNMIH----------------------------------YDPRNFLQ-----FNIMHQPQYYPEQEDR-----------KAF-MSG---------------------------------------------------------------------------------------------------------------------------------KKYSQCNIVRVHSSTNEI---------------------------------------------------------------------------------------------------------------------------------------------------   [288]
'gi|21396799|gb|AAM51778.1| MADS-box gene 4 protein [Lycopodium annotinum]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATCRQVTFSKRRSGLLKKAHELSVLCDAQVAVIIFSST------G---KLFQFAS--T------R-------------------------------------------------------------------------------------------------MKEILERYERNSD---PLQIDA--VIPR--D--L-------EY-WSREA-AKAKDELDR--CHQKN-----------------------------------RH-------------------------------MLGE------------DLS-ALN-LNELEELEQQL---DSGLRRVRCRKDQVLRD-------------------------------------------------------------------------------------------------------RIEELTKQ------ESFLREE-------------NRMLRS--K-------IA-VP----------------------------KEST--EPILDEM-----------------------------------------------------NMETREPPSMAIVEEELSLKLNSKTWPDIH---------------------------------------------------------FSL-QLG---------------------------------------------------------------------------------------------------------------------------------QYQPPRTETPTANHRPN----------------------------------------------------------------------------------------------------------------------------------------------------   [237]
'gi|62122347|dbj|BAD93168.1| MADS-box transcription factor GbMADS4 [Ginkgo biloba]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENSTNRQVTFSKRRGGLLKKAHELSVLCDAEIAVILFSST------G---KLFEYCSPRS------S-------------------------------------------------------------------------------------------------IKTVIDRYQRVSG---ARLWDT--------Q--H-------QN-LFSEM-AMVKSENEQ--LHKTL-----------------------------------RH-------------------------------MMGE------------DVN-SLS-TDELHSLEQTL---EIASSRVRTRKNQYLVQ-------------------------------------------------------------------------------------------------------QIDKLRKK------ERFLNEH-------------NNHLYA--L-------LV-EN----------------------------QASM--RDSSTSC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QHREQPTAQAFRVQPSQPNLQDREHDEHHDLRLGFSYFLG-----------------------------------------------------------------   [222]
'gi|2507627|gb|AAB80808.1| putative MADS box transcription factor PrMADS5 [Pinus radiata]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKTQMKRIENATSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPS------G---KLYEFAS--T------S-------------------------------------------------------------------------------------------------MQKLLEKYEICSQ---ECGTSE-SNKKQ--D--P-------QC-LKQEI-ENMEKRVRI--LQSTQ-----------------------------------RK-------------------------------MLGE------------GLA-LCS-IKELNQLEGQV---ERGLNHVRATKTKVLLD-------------------------------------------------------------------------------------------------------EIEKLKQK------EHVFREE-------------KALLHK--K-------SV-NL----------------------------RGAN--GCTIPSI-----------------------------------------------------GLTSIERVEVQ----------------------------------------------------------------------------TQL-VMR---------------------------------------------------------------------------------------------------------------------------------PPHATEMDDNFMDVDNVPLSG------------------------------------------------------------------------------------------------------------------------------------------------   [223]
'gi|30689162|ref|NP 850377.1| SHP2 (SHATTERPROOF 2); transcription factor [Arabidopsis thaliana]'                                    -------------------------------------------------------------MEGGASNEVAESSKKI--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTR------G---RLYEYAN--N------S-------------------------------------------------------------------------------------------------VRGTIERYKKACS---DAVNPP-TITEA--N--T-------QY-YQQEA-SKLRRQIRD--IQNLN-----------------------------------RH-------------------------------ILGE------------SLG-SLN-FKELKNLESRL---EKGISRVRSKKHEMLVA-------------------------------------------------------------------------------------------------------EIEYMQKR----VKEIELQND-------------NMYLRS--K-------IT-ER----------------------------TGLQ--QQESSVI-----------------------------------------------------HQGTVYESGVTSSHQSG------------------------------QYNRNYIA-----VNLLEPNQNSSNQDQ------------PPL-QLV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [248]
lcl|O01g10504.1.71.m07671O_unnamed_protein_product                                    ------------------------------------MMNMMTDLSCGPSSMTELTAAAAPAGSGSSAAVAAGSSEKM--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR------G---RLYEYAN--N------S-------------------------------------------------------------------------------------------------VKSTVERYKKANS---DTSNSG-TVAEV--N--A-------QH-YQQES-SKLRQQISS--LQNAN----------------------------------SRT-------------------------------IVGD------------SIN-TMS-LRDLKQVENRL---EKGIAKIRARKNELLYA-------------------------------------------------------------------------------------------------------EVEYMQKR------EVELQND-------------NMYLRS--K-------VV-EN----------------------------ERGQ--QPLNMMG-----------------------------------------------------AASTSEYDHMVNNP---------------------------------YDSRNFLQ-----VNIMQQPQHYAHQLQP-----------TTL-QLG---------------------------------------------------------------------------------------------------------------------------------SRPSISFGVDTVRTHVR----------------------------------------------------------------------------------------------------------------------------------------------------   [287]
lcl|O12g10540.4.82.m26743O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR------G---RLYEYSN-NN------N-------------------------------------------------------------------------------------------------VKATIDRYKKAHA---CGSTSGAPLIEV--N--A---Q---QY-YQQES-AKLRHQIQM--LQNTN-----------------------------------KH-------------------------------LVGD------------NVS-NLS-LKELKQLESRL---EKGISKIRARK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDMKCFFP-----LNLFEAAAQ-VQAVAAQRQQIIP----TEL-NLG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHHHLAIPGAAAADAPPPHF-------------------------------------------------------------------------------------------   [201]
'gi|15225534|ref|NP 182090.1| AGL20 (AGAMOUS-LIKE 20); transcription factor [Arabidopsis thaliana] >gi|20334734|gb|AAM16228.1| A'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPK------G---KLYEFAS--S------N-------------------------------------------------------------------------------------------------MQDTIDRYLRHTK---DRVSTK-PVSEE--N--M-------QH-LKYEA-ANMMKKIEQ--LEASK-----------------------------------RK-------------------------------LLGE------------GIG-TCS-IEELQQIEQQL---EKSVKCIRARKTQVFKE-------------------------------------------------------------------------------------------------------QIEQLKQK------EKALAAE-------------NEKLSE--K-------WG-SH----------------------------ESEV--WSNKNQE-----------------------------------------------------STGRGDEESSPSSEVE-----------------------------------------------------------------------TQL-FIG---------------------------------------------------------------------------------------------------------------------------------LPCSSRK--------------------------------------------------------------------------------------------------------------------------------------------------------------   [214]
'gi|15235869|ref|NP 194026.1| AGL19 (AGAMOUS-LIKE 19); transcription factor [Arabidopsis thaliana] >gi|23296476|gb|AAN13066.1| p'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPR------S---KLYEFSS--S------S-------------------------------------------------------------------------------------------------IAATIERYQRRIK---EIGNNH--KRND--N--S-------QQ-ARDET-SGLTKKIEQ--LEISK-----------------------------------RK-------------------------------LLGE------------GID-ACS-IEELQQLENQL---DRSLSRIRAKKYQLLRE-------------------------------------------------------------------------------------------------------EIEKLKAE------ERNLVKE-------------NKDLKE--K-------WL-GM----------------------------GTAT--IASSQST-----------------------------------------------------LSSSEVNIDDNMEVE------------------------------------------------------------------------TGL-FIG---------------------------------------------------------------------------------------------------------------------------------PPETRQSKKFPPQN-------------------------------------------------------------------------------------------------------------------------------------------------------   [219]
'gi|18424559|ref|NP 568952.1| AGL42 (AGAMOUS LIKE 42); transcription factor [Arabidopsis thaliana] >gi|79331885|ref|NP 001032123'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQR------G---RLYEFSS--S------D-------------------------------------------------------------------------------------------------MQKTIERYRKYTK---DHETSN-HDSQI--H--L-------QQ-LKQEA-SHMITKIEL--LEFHK-----------------------------------RK-------------------------------LLGQ------------GIA-SCS-LEELQEIDSQL---QRSLGKVRERKAQLFKE-------------------------------------------------------------------------------------------------------QLEKLKAK------EKQLLEE-------------NVKLHQ--K-------NV-IN----------------------------PWRG--SSTDQQQ-----------------------------------------------------EKYKVIDLN----------------------------------------------------------------------LEVE----TDL-FIG---------------------------------------------------------------------------------------------------------------------------------LPNRNC---------------------------------------------------------------------------------------------------------------------------------------------------------------   [210]
lcl|Smo_SrMADS1_1_1_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATTRQVTFSKRRGGLLKKARELAILCDAELSVIIFSST------G---KLFEYAS--S------S-------------------------------------------------------------------------------------------------MKDILERYSKCPE---RNPSSP-LDVDL--D--N-------DY-WNQEV-ARLKQKIEQ--LENTK-----------------------------------RH-------------------------------MMGE------------ELT-SLT-VKELQELERMA---ENGYNEIRARKLTLMNL-------------------------------------------------------------------------------------------------------Q-------------ESLLMEE-------------LEELRR--K-------VE-AA----------------------------EGIG--SHTLRSF-----------------------------------------------------TVLTEARSPSETREPTTITPGAQAQDNLRDESD------------------------------------------------------TSL-QLR---------------------------------------------------------------------------------------------------------------------------------LYVDTNGDASPSSNGHNKGE-------------------------------------------------------------------------------------------------------------------------------------------------   [237]
lcl|Smo_SrMADS1_30_1_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATTRQVTFSKRRGGLLKKARELAILCDAELSVIIFSST------G---KLFEYAS--S------S-------------------------------------------------------------------------------------------------MKDILERYSKCPE---RNPSSP-LDVDL--D--N-------DY-WNQEV-ARLKQKIEQ--LENTK-----------------------------------RH-------------------------------MMGE------------ELT-SLT-VKELQELERMA---ENGYNEIRARKLTLMNL-------------------------------------------------------------------------------------------------------Q-------------ESLLMEE-------------LEELRR--K-------VE-AA----------------------------EGIG--SHTLRSF-----------------------------------------------------TVLTEARSPSETREPTTITPGAQAQDNLRDESD------------------------------------------------------TSL-QLR---------------------------------------------------------------------------------------------------------------------------------LYVDTNGDASPSSNGHNKRE-------------------------------------------------------------------------------------------------------------------------------------------------   [237]
'gi|33337581|gb|AAQ13443.1| MADS-domain protein DAL10 [Picea abies]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIELKKIESTSNRQVTFSKRRMGLLKKAQELSVLCDAEVGVIIFSNT------G---RLYDFSS--S------S-------------------------------------------------------------------------------------------------MEKMIETYYRFLE---KNNHGQ--------QAHL-------QIPSNQDL-GRLMQELQA--IESMY-----------------------------------KK-------------------------------SIGE------------ELS-SLS-INDLKHLEHQL---EVGISRIRGRKSELVEE-------------------------------------------------------------------------------------------------------QIANLQSR------EHDLLEE-------------NNVLQQ--L-------LS-EA----------------------------RSST--EMVASRF-----------------------------------------------------VNNNLAANILPAPITSTNPYQQNFGQ-------------------------------------------------------------TSQVCIG---------------------------------------------------------------------------------------------------------------------------------NSSSSKNIEQSSSGPQSTAKERPCPDQHGYPTQSINLLLDGWDIMEEYGSVNIK---------------------------------------------------------------------------------------------------------------   [270]
'gi|29611976|gb|AAO85643.1| MADS-box transcription factor MADS2 [Zea mays]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLVIFSST------G---RLYEYSS--T------S-------------------------------------------------------------------------------------------------MKSVIDRYGKAKE---EQQDVA--NPNS--E--L-------KF-WQREA-ASLRQQLHN--LQENY-----------------------------------RQ-------------------------------LTGD------------DLS-GLN-VKELQSLENQL---ETSLRGVRAKKDHLLID-------------------------------------------------------------------------------------------------------EIHDLNRK------ASLFHQE-------------NTDLYN--K-------IN-LI----------------------------RQEN--DELHKK-------------------------------------------------------IYETEGPSGVNRESPTPFN----FAVVETRDVP-----------------------------------------------------VQL-ELS---------------------------------------------------------------------------------------------------------------------------------TLPQQNNIEPSTAPKLGLQLIP-----------------------------------------------------------------------------------------------------------------------------------------------   [240]
'gi|30694601|ref|NP 191282.2| AGL16; transcription factor [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSST------G---RLYDFSS--S------S-------------------------------------------------------------------------------------------------MKSVIERYSDAKG---ETSSEN--DPAS--E--I-------QF-WQKEA-AILKRQLHN--LQENH-----------------------------------RQ-------------------------------MMGE------------ELS-GLS-VEALQNLENQL---ELSLRGVRMKKDQMLIE-------------------------------------------------------------------------------------------------------EIQVLNRE------GNLVHQE-------------NLDLHK--K-------VN-LM----------------------------HQQN--MELHEK-------------------------------------------------------VSEVEGVKIANKNSLLTNG----LDMRDTSNEH-----------------------------------------------------VHL-QLS---------------------------------------------------------------------------------------------------------------------------------Q-PQHDHETHSKAIQLNYFSFIA----------------------------------------------------------------------------------------------------------------------------------------------   [240]
'gi|6092011|dbj|BAA85631.1| GpMADS4 [Gnetum parvifolium]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEMKKIECTSSRQVTFSKRRSGLLKKAHELSVLCDAEVAVIIFSNT------G---KLYEYAS--S------S-------------------------------------------------------------------------------------------------MRKTIERYQKFEE---NSTNSTKSFKTK--S--E-------QG-SSADV-GSLLLEMKA--MENKH-----------------------------------RN-------------------------------SMGE------------ELS-SLS-VPELKRLEQEL---EVGINRVRARQNELFEA-------------------------------------------------------------------------------------------------------EICGLKRK------EHDLIEE-------------NMMLHK--L-------LS-ET----------------------------GSSS--EMAASAP-----------------------------------------------------AHSFGDESAMMACQYRQQVCMGESSSSRNQTRHHIYGVSDVARH-------------------------------------------LAL-QIS---------------------------------------------------------------------------------------------------------------------------------CPNQSRNDYNLVLDGWEYMPEYAPPLVSMD---------------------------------------------------------------------------------------------------------------------------------------   [266]
lcl|O02g36924.1.72.m08779O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSST------G---RLYEYSS--T------S-------------------------------------------------------------------------------------------------MKSVIDRYGKSKD---EQQAVA--NPNS--E--L-------KF-WQREA-ASLRQQLHN--LQENH-----------------------------------RQ-------------------------------LMGE------------DLS-GLN-VKELQSLENQL---EISLRSVRTKKDHVLID-------------------------------------------------------------------------------------------------------EIHELNRK------GSLVHQE-------------NMELYK--K-------IS-LI----------------------------RQEN--AELYKK-------------------------------------------------------IYETEGPSEVNRDSPTPYN----FAVIEKTNVP-----------------------------------------------------VQL-GLS---------------------------------------------------------------------------------------------------------------------------------TLPQHSDAEQSTAPKLGLQLNP-----------------------------------------------------------------------------------------------------------------------------------------------   [240]
'gi|3253147|gb|AAC24492.1| CMADS1 [Ceratopteris richardii]'                                    ----------------------------------------------------------------------------MNTFLSSGPHTYLNNLRCGEWGSGTAPGPIADPKSAAYYRDHTKNDKVNDLSNRLHSYGPPEALQYPNQHAIAADTEKMEVENSGKMAASVERSAQDAHASGALQEDVVAAYVDNMPACVAGVTLVPQGG-------------------RGTIPIRRIDNPTSRQVTFSKRRNGLLKKAYELSVLCDAEVGVMVFSAT------G---RLSEFAS--T------S-------------------------------------------------------------------------------------------------MQKVLERYQEHSN---GAPSRK--VLLQ--D--V-------EF-WKREV-LFLRDQLFH--LKNYE-----------------------------------NH-------------------------------ILGE------------NQI-PLD-LAEIQRVETRL---ENALNKIRIQKVQVLHG-------------------------------------------------------------------------------------------------------EMQQIYKQ------EARLFEE-------------NNILRK--K-------LA-EA----------------------------TTIN--GMRGSMS-----------------------------------------------------TMTMSHEDLPGSTNQSYG---------------------------------------------------------------------TKALQGG---------------------------------------------------------------------------------------------------------------------------------CPSDTSTTTSNDPNHHSSHPPSHPSASQPLTLHLTSPCSPKLDLRL-----------------------------------------------------------------------------------------------------------------------   [383]
'gi|15225607|ref|NP 179033.1| ANR1; DNA binding / transcription factor [Arabidopsis thaliana] >gi|4586018|gb|AAD25638.1| putativ'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSST------G---KLYDYASN-S------S-------------------------------------------------------------------------------------------------MKTIIERYNRVKE---EQHQLL--NHAS--E--I-------KF-WQREV-ASLQQQLQY--LQECH-----------------------------------RK-------------------------------LVGE------------ELS-GMN-ANDLQNLEDQL---VTSLKGVRLKKDQLMTN-------------------------------------------------------------------------------------------------------EIRELNRK------GQIIQKE-------------NHELQN--I-------VD-IM----------------------------RKEN--IKLQKK-------------------------------------------------------VHGRTNAIEGNSSVDP-------ISNGTTTYAP-----------------------------------------------------PQL-QLI---------------------------------------------------------------------------------------------------------------------------------Q-LQPAPREKSIRLGLQLS--------------------------------------------------------------------------------------------------------------------------------------------------   [234]
'gi|13384062|gb|AAK21255.1| MADS-box transcription factor FBP24 [Petunia x hybrida] >gi|27151496|sp|Q9ATE5|FBP24 PETHY MADS-box'     -------------------------------------------------------------------------MIIM--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSK------G---KLFEYCSQPH------S-------------------------------------------------------------------------------------------------MSQIISRYLQTTG---ASLPVE--------D--N-------RVQLYDEV-AKMRRDTLN--LQLSL-----------------------------------QR-------------------------------YKGD------------DLS-LAQ-YEELNELEKQL---EHALNKIRARKLELMQQ-------------------------------------------------------------------------------------------------------QMENLKKT------EKMLEKE-------------NHDMYQ--W-------LM-NN----------------------------QMYK--QESAAMD-----------------------------------------------------HEDHHHHHEHQQAITELNLLGEQ----------------------------------------------------------------PLLSHFT---------------------------------------------------------------------------------------------------------------------------------FFGDQEQPSTSTVNHFASISLTSPPANSISPYRLQPSHPNLQDSHVHGPSYD-----------------------------------------------------------------------------------------------------------------   [268]
'gi|15235748|ref|NP 195507.1| AGL21; transcription factor [Arabidopsis thaliana] >gi|18478603|gb|AAL73213.1| MADS-box protein AG'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSST------G---KLYDFAS--S------S-------------------------------------------------------------------------------------------------MKSVIDRYNKSKI---EQQQLL--NPAS--E--V-------KF-WQREA-AVLRQELHA--LQENH-----------------------------------RQ-------------------------------MMGE------------QLN-GLS-VNELNSLENQI---EISLRGIRMRKEQLLTQ-------------------------------------------------------------------------------------------------------EIQELSQK------RNLIHQE-------------NLDLSR--K-------VQ-RI----------------------------HQEN--VELYKK-------------------------------------------------------AYMANTNG---------FTHREVAVADDESHTQ-----------------------------------------------------IRL-QLS---------------------------------------------------------------------------------------------------------------------------------Q-PEHSDYDTPPRANE-----------------------------------------------------------------------------------------------------------------------------------------------------   [228]
'gi|15240706|ref|NP 196883.1| AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factor [Arabidopsis thaliana] >gi|790635|gb|A'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKS------G---KLFEYSS--T------G-------------------------------------------------------------------------------------------------MKQTLSRYGNHQS---SSASKA-------------------EE-DCAEV-DILKDQLSK--LQEKH-----------------------------------LQ-------------------------------LQGK------------GLN-PLT-FKELQSLEQQL---YHALITVRERKERLLTN-------------------------------------------------------------------------------------------------------QLEESRLK------EQRAELE-------------NETLRR--Q-------VQ-EL----------------------------RSFL--PSFTHYV-----------------------------------------------------PSYIKCFAIDPKNALINHDSKCSLQNTDSD---------------------------------------------------------TTL-QLG---------------------------------------------------------------------------------------------------------------------------------LPGEAHDRRTNEGERESPSSDSVTTNTSSETAERGDQSSLANSPPEAKRQRFSV---------------------------------------------------------------------------------------------------------------   [268]
lcl|O12g10520.1.82.m05034O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQ------G---KLHELATN-G------N-------------------------------------------------------------------------------------------------MHNLVERYQSNVA---GGQMEP--GALQ--R--Q-------QV-AEQGI-FLLREEIDL--LQRGL-----------------------------------RS-------------------------------TYGG------------GAG-EMT-LDKLHALEKGL---ELWIYQIRTTKMQMMQQ-------------------------------------------------------------------------------------------------------EIQFLRNK------EGILKEA-------------NEMLQE--K-------VK-EQ----------------------------QKLY--MSLLDLH-----------------------------------------------------SQQPTQPMTYGNRFFSI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [202]
'gi|18076209|emb|CAC81053.1| putative MADS-domain transcription factor [Zea mays] >gi|27151620|sp|Q8VWM8|M17 MAIZE MADS-box prot'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSST------G---KMFEYCSPAC------S-------------------------------------------------------------------------------------------------LRELIEQYQHATN---SHFEEI--------N--H------DQQ-ILLEM-TRMKNEMEK--LETGI-----------------------------------RR-------------------------------YTGD------------DLS-SLT-LDDVSDLEQQL---EYSVSKVRARKHQLLNQ-------------------------------------------------------------------------------------------------------QLDNLRRK------EQILEDQ-------------NTFLYR--M-------IN-EN----------------------------QQAA--LTGEVKL-----------------------------------------------------GEMAPLAMLQPPPAFAHSATAYYGGESSSSG--------------------------------------------------------TAL-QLM---------------------------------------------------------------------------------------------------------------------------------SAAPQLH----------------------------------------------------------ADDLGFRLQPTQPNLQDPAAPCGGLHGHGLQL--------------------------------------------------------------------   [259]
lcl|O08g33488.1.78.m07338O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSST------S---RLYDFAS--S------S-------------------------------------------------------------------------------------------------MKSIIERYNETKE---DPHQTM--NASS--E--A-------KL-WQQEA-ASLRQQLHN--LQEYH-----------------------------------RQ-------------------------------LLGQ------------QLS-GLD-VEDLQNLESKL---EMSLKNIRLRKDNVMMD-------------------------------------------------------------------------------------------------------QIQELSRK------VVTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [159]
'gi|34452081|gb|AAQ72497.1| MADS-box protein 9 [Petunia x hybrida]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIDIKLIENVNNRQVTFSKRRAGLLKKANELSVLCDAEVAVIIFSST------G---KLFEFSS--T------S-------------------------------------------------------------------------------------------------MKQTLSRYNRCLA---STETSAIEKKLEDNEQPQPLQTYVPKQ-EQKEM-DILKDELSK--LKMDQ-----------------------------------LR-------------------------------LLGK------------DLS-GMG-LNELRLLEHQL---NEGLLAIKDRKEELLIQ-------------------------------------------------------------------------------------------------------QLEQSRRQ------EERAALE-------------SETLRR--Q-------LE-EL----------------------------RGLF--PLSTSLP-----------------------------------------------------PPYLEYHPLEQKYPILKEGEESLDSDTACEDGVDD--EDSN----------------------------------------------TTL-QLG---------------------------------------------------------------------------------------------------------------------------------LPIVGRKRKKPEQDSPSSNSENQVGSK------------------------------------------------------------------------------------------------------------------------------------------   [269]
lcl|O04g23910.1.74.m07526O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCT------G---RLYDFSS--S------S-------------------------------------------------------------------------------------------------MKSIIERYQEAGE---EHCRLL--NPMS--E--A-------KF-WQREV-TTLRQQVQN--LHHNN-----------------------------------RQ-------------------------------LLGE------------EIS-NFT-VRDLQLLQNQV---EMSLHSIRNKKDQLLAE-------------------------------------------------------------------------------------------------------EILKLNEK------GSLVQKE-------------NSELRK--K-------FN-IA----------------------------HQRN--IELHKKL-----------------------------------------------------NSGESTSSEQVTRSSKDPGE----SSTPRDSRVC-----------------------------------------------------IDL-ELS---------------------------------------------------------------------------------------------------------------------------------QKEVEDE--------------------------------------------------------------------------------------------------------------------------------------------------------------   [227]
lcl|O02g49840.1.72.m10018O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSST------G---RLYEFSS--T------N-------------------------------------------------------------------------------------------------MKTVIDRYTNAKE---ELLGG---NATS--E--I-------KI-WQREA-ASLRQQLHN--LQESH-----------------------------------KQ-------------------------------LMGE------------ELS-GLG-VRDLQGLENRL---EISLRNIRMRKDNLLKS-------------------------------------------------------------------------------------------------------EIEELHVK------GSLIHQE-------------NIELSR--S-------LN-VM----------------------------SQQK--LELYNKL-----------------------------------------------------QACEQRGATDANESSSTPYS----FRIIQNANMP-----------------------------------------------------PSL-ELS---------------------------------------------------------------------------------------------------------------------------------Q-SQQREGECSKTAAPELGLHLP----------------------------------------------------------------------------------------------------------------------------------------------   [241]
lcl|O10g39130.2.80.m21952O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPR------G---RLYEFASA-P------S-------------------------------------------------------------------------------------------------LQKTIDRYKAYTK---DHVNNK--TIQQ--D--I-------QQ-VKDDT-LGLAKKLEA--LDESR-----------------------------------RK-------------------------------ILGE------------NLE-GFS-IEELRGLEMKL---EKSLHKIRLKKVYISYF-------------------------------------------------------------------------------------------------------QYS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [151]
'gi|18409883|ref|NP 565022.1| AGL12 (AGAMOUS-LIKE 12); transcription factor [Arabidopsis thaliana] >gi|30793797|gb|AAP40351.1| p'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------RGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQ------G---KLFELATK-G------T-------------------------------------------------------------------------------------------------MEGMIDKYMKCTG---GGRGSS--SATFTAQEQL---QPPNLD-PKDEI-NVLKQEIEM--LQKGI-----------------------------------SY-------------------------------MFGG------------GDG-AMN-LEELLLLEKHL---EYWISQIRSAKMDVMLQ-------------------------------------------------------------------------------------------------------EIQSLRNK------EGVLKNT-------------NKYLLE--K-------IE-EN----------------------------NNSI--LDANFAV-----------------------------------------------------METNYSYPLTMPSEIFQF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [211]
'gi|3253149|gb|AAC24493.1| CMADS2 [Ceratopteris richardii]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RRKIKIKRIENATTRQVTFSKRRGGLLKKAHDLSVLCDADVGVIIFSSK------G---KLFQFAN--P------S-------------------------------------------------------------------------------------------------MKSVLERYYKAQG---DAESAD--NVSS-----A----------ENIEI-DRITLFTEK--LKALQ-----------------------------------RN-------------------------------VIGD------------DLE-RLS-LRDLIHLEQQI---HESLGRIRAKKEEMILD-------------------------------------------------------------------------------------------------------QLEDFKKK---VTDARKTTNA-------------NSSLLD--K-------LL-DF----------------------------CSSD--MTSSHNF-----------------------------------------------------VDCEPL-LISEAPQADASLAGRAATSEQSTDV-RE--CSPPAKRLRITEDLNHSPVCME-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [239]
lcl|O02g49840.2.72.m33857O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSST------G---RLYEFSS--T------N-------------------------------------------------------------------------------------------------MKTVIDRYTNAKE---ELLGG---NATS--E--I-------KI-WQREA-ASLRQQLHN--LQESH-----------------------------------KQ-------------------------------LMGE------------ELS-GLG-VRDLQGLENRL---EISLRNIRMRKDNLLKS-------------------------------------------------------------------------------------------------------EIEELHVK------GSLIHQE-------------NIELSR--S-------LN-VM----------------------------SQQK--LELYNK-------------------------------------------------------ACEQRGATDANESSSTPYS----FRIIQNANMP-----------------------------------------------------PSL-ELS---------------------------------------------------------------------------------------------------------------------------------Q-SQQREGECSKTAAPELGLHLP----------------------------------------------------------------------------------------------------------------------------------------------   [239]
'gi|42568474|ref|NP 200000.3| transcription factor [Arabidopsis thaliana] >gi|32402404|gb|AAN52784.1| MADS-box protein AGL71 [Ar'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQS------G---RLHEYSS--S------Q-------------------------------------------------------------------------------------------------MEKIIDRYGKFSN---AFYVAERPQVER--Y--L-------QE-LKMEI-DRMVKKIDL--LEVHH-----------------------------------RK-------------------------------LLGQ------------GLD-SCS-VTELQEIDTQI---EKSLRIVRSRKAELYAD-------------------------------------------------------------------------------------------------------QLKKLKEK------ERELLNE-------------RKRLLE--E-------VN-MH----------------------------HSSK--GNTEGGH-----------------------------------------------------RTKHSSEVE------------------------------------------------------------------------------TDL-FIG---------------------------------------------------------------------------------------------------------------------------------LPVTRL---------------------------------------------------------------------------------------------------------------------------------------------------------------   [207]
'gi|57999634|dbj|BAD88437.1| MADS-box transcription factor CsMADS1 [Coleochaete scutata]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIRRIENATSRQVTFSKRRNGLLKKAYELSVLCDVDIAVIVFSPT------G---KLFQYAS--S------S-------------------------------------------------------------------------------------------------MKEILERYEQVPP---EQKEKG-SQRLD--N--M-------DY-LNREV-AKLRNEVEH--KYHEA-----------------------------------RQ-------------------------------LEGE------------DLD-RLG-VYELEQLEQKL---SNSMRRIRGRKDELMKA-------------------------------------------------------------------------------------------------------ELEGLRKQ------VADMETA-------------LVGAAS----------FD-------------------------------GRPL--SGSSNYL-----------------------------------------------------LQSIPGIRTMPPSSLGGMNPAS-----------------------------------------------------------------TSL-QLG------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDRLFGNRGVELHDRSASDESPVMTNRMSVDFAQAPREMSGVDLSGSPVPPWKSQAAAAAQQEWKNQASSPTDWKVTNTEHLDSWPKAPAPTPEWKSTSVQPEWKNQSSPSSEWKPLDWMYHGPQD   [336]
lcl|O02g07430.1.72.m06090O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSST------G---KMFEYCSPTC------S-------------------------------------------------------------------------------------------------LRELIEHYQTVTN---THFEEI--------N--H------DQQ-IFVEM-TRMRNEMEK--LDGGI-----------------------------------RR-------------------------------FTGD------------DLS-NLT-LADINDLEQQL---EFSVTKVRARKHQLLNQ-------------------------------------------------------------------------------------------------------QLDNLRRK------EHILEDQ-------------NSFLCR--M-------IN-EN----------------------------HHQA--AVGG--------------------------------------------------------GDVKAMVEMAPVLSMLTAAPAYYGEESSS----------------------------------------------------------TAL-QLT---------------------------------------------------------------------------------------------------------------------------------PPLHAVD---------------------------------------------------------AAAAAGFRLQPTQPNLQDPGCSSSSFHAAAAGHGLQLW---------------------------------------------------------------   [260]
'gi|15227254|ref|NP 179848.1| AGL17 (AGAMOUS-LIKE 17); transcription factor [Arabidopsis thaliana]'                                  ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNT------D---KLYDFAS--S------S-------------------------------------------------------------------------------------------------VKSTIERFNTAKM---EEQELM--NPAS--E--V-------KF-WQREA-ETLRQELHS--LQENY-----------------------------------RQ-------------------------------LTGV------------ELN-GLS-VKELQNIESQL---EMSLRGIRMKREQILTN-------------------------------------------------------------------------------------------------------EIKELTRK------RNLVHHE-------------NLELSR--K-------VQ-RI----------------------------HQEN--VELYKK-------------------------------------------------------AYGTSNTNG--------LGHHELVDAVYESHAQ-----------------------------------------------------VRL-QLS---------------------------------------------------------------------------------------------------------------------------------Q-PEQSHYKTSSNS-------------------------------------------------------------------------------------------------------------------------------------------------------   [227]
'gi|23095852|emb|CAD18858.1| putative MADS-domain transcription factor [Gnetum gnemon] >gi|5019429|emb|CAB44448.1| putative MADS'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEMKKIENTNNRQVTFSKRRNGLMKKAQELAVLCDAEVGLIIFSST------G---KLFQYCN--T------S-------------------------------------------------------------------------------------------------MSQVLEKYHKSPG---VDHWDI--------E--L-------QI-MGQEL-IKERRENEK--LRSKL-----------------------------------RY-------------------------------MMGE------------DIG-ELK-IAQLEKLEHDL---ESALRLVRRKKDHAWDY-------------------------------------------------------------------------------------------------------QRTILLKK------VKLQYAL-------------HEQMSR--Q-------LPMEV----------------------------LAKA--EEEARQI-----------------------------------------------------LASTAEEEARQNMTFSFLPNAS-----------------------------------------------------------------TQYARIA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [210]
'gi|15238067|ref|NP 196576.1| FLC (FLOWERING LOCUS C); transcription factor [Arabidopsis thaliana] >gi|55417928|gb|AAV51230.1| f'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSAS------G---KLYSFSSG-D------N-------------------------------------------------------------------------------------------------LVKILDRYGKQHA---DDLKAL--------D-------------HQSKA-LNYGSHYEL--LELVD-----------------------------------SK-------------------------------LVGS------------NVK-NVS-IDALVQLEEHL---ETALSVTRAKKTELMLK-------------------------------------------------------------------------------------------------------LVENLKEK------EKMLKEE-------------NQVLAS--Q-------ME-NN----------------------------HHVG--AEAEME-------------------------------------------------------MSPAGQISDNLP--------------------------------------------------------------------------VTLPLLN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [196]
'gi|15238340|ref|NP 201311.1| MAF3 (MADS AFFECTING FLOWERING 3); transcription factor [Arabidopsis thaliana] >gi|29165401|gb|AAO'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RRKVEIKRIENKSSRQVTFSKRRKGLIEKARQLSILCESSIAVVAVSGS------G---KLYDSASG-D------N-------------------------------------------------------------------------------------------------MSKIIDRYEIHHA---DELKAL--------D-------------LAEKI-RNYLPHKEL--LEIVQ-----------------------------------SK-------------------------------LEES------------NVD-NVS-VDSLISMEEQL---ETALSVIRAKKTELMME-------------------------------------------------------------------------------------------------------DMKSLQER------EKLLIEE-------------NQILAS--Q-------VG-KK----------------------------TFLV--IEGDRG-------------------------------------------------------MSRENGSGNKVP--------------------------------------------------------------------------ETLSLLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [196]
'gi|30699233|ref|NP 850980.1| MAF1 (MADS AFFECTING FLOWERING 1); transcription factor [Arabidopsis thaliana] >gi|11545545|gb|AAG'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RRKIEIKRIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSAS------G---KLYDSSSG-D------D-------------------------------------------------------------------------------------------------ISKIIDRYEIQHA---DELRAL--------D-------------LEEKI-QNYLPHKEL--LETVQ-----------------------------------SK-------------------------------LEEP------------NVD-NVS-VDSLISLEEQL---ETALSVSRARKAELMME-------------------------------------------------------------------------------------------------------YIESLKEK------EKLLREE-------------NQVLAS--Q-------LS-EK----------------------------KGMS--HRSAGLM-----------------------------------------------GRVKLKIKKLENSSGRHVTYSKRRSGILKKAKELSILCDIPLILLMFSPNDKPTICVGDHSSIEDVITKYAQQTPQERAKRKL----------ESLEALKKTFKKLDHDVNIQDFLGSGGQTVEMLIKSIVWQELSSHLGALQCQMADVEKRLSYWSDPEKVENIDHIRAMEQSLKESLNRIRIHKENFAKQHLMSLQCAAAQFQNDMKLPLGLTGDPNTSSWFHGGGGAEAQQPMMLPEDPSLLHQRDIGCSASTSLQSYPGYFSMGKQSTDNAGGGEQHHHAAVQQQPEFSQADCLTSLQLGAQFPYPSAFDNAGLLSDRLFDNAAAAAAAMDFGGHYDLPRPGDEASFQNWASAACGATMYDHQQQQQQQQQPAQIMTESLTPISSLQQQL   [562]
'gi|30698092|ref|NP 569005.2| AGL31 (MADS AFFECTING FLOWERING2); transcription factor [Arabidopsis thaliana]'                        ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGS------G---KLYKSASG-D------N-------------------------------------------------------------------------------------------------MSKIIDRYEIHHA---DELEAL--------D-------------LAEKT-RNYLPLKEL--LEIVQ-----------------------------------SK-------------------------------LEES------------NVD-NAS-VDTLISLEEQL---ETALSVTRARKTELMMG-------------------------------------------------------------------------------------------------------EVKSLQKT------------------------------------------VG-KK----------------------------TFLV--IEGDRG-------------------------------------------------------MSWENGSGNKVR--------------------------------------------------------------------------ETLPLLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [182]
'gi|42568779|ref|NP 201312.2| MAF4 (MADS AFFECTING FLOWERING 4); transcription factor [Arabidopsis thaliana] >gi|29165411|gb|AAO'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RRKVEIKRIENKSSRQVTFCKRRNGLMEKARQLSILCESSVALIIISAT------G---RLYSFSSG-D------S-------------------------------------------------------------------------------------------------MAKILSRYELEQA---DDLKTL--------D-------------LEEKT-LNYLSHKEL--LETIQ-----------------------------------CK-------------------------------IEEA------------KSD-NVS-IDCLKSLEEQL---KTALSVTRARKTELMME-------------------------------------------------------------------------------------------------------LVKTHQEK------EKLLREE-------------NQSLTN--Q-------LI-KMGKM-------------------------KKSV--EAEDARA------------------------------------------------------MSPESSSDNKPP--------------------------------------------------------------------------ETLLLLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [200]
'gi|15230284|ref|NP 191298.1| AGL18; transcription factor [Arabidopsis thaliana] >gi|62321764|dbj|BAD95389.1| MADS transcription'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSST------G---KIYDFSS--V------C-------------------------------------------------------------------------------------------------MEQILSRYGYTTA---STEHKQQREHQLLIC--A---SHGNEA-VLRND-DSMKGELER--LQLAI-----------------------------------ER-------------------------------LKGK------------ELE-GMS-FPDLISLENQL---NESLHSVKDQKTQILLN-------------------------------------------------------------------------------------------------------QIERSRIQ------EKKALEE-------------NQILRK--Q-------VE-ML----------------------------GRGS--GPKVLNE-----------------------------------------------------RPQDSSPEADPESSSSEEDENDNEEHHSD----------------------------------------------------------TSL-QLG---------------------------------------------------------------------------------------------------------------------------------LSSTGYCTKRKKPKIELVCDNSGSQVASD----------------------------------------------------------------------------------------------------------------------------------------   [256]
'gi|42568781|ref|NP 201313.2| MAF5 (MADS AFFECTING FLOWERING 5 VARIANT I); transcription factor [Arabidopsis thaliana] >gi|51968'    ---------------------------------------------------------------------MCRKSEAM--------------------------------------------------------------------------------------------------------------------------------G-------------------RRRVEIKRIENKSSRQVTFCKRRNGLMEKARQLSILCGSSVALFIVSST------G---KLYNSSSG-D------S-------------------------------------------------------------------------------------------------MAKIISRFKIQQA---DDPETL--------D-------------LEDKT-QDYLSHKEL--LEIVQ-----------------------------------RK-------------------------------IEEA------------KGD-NVS-IESLISMEEQL---KSALSVIRARKTELLME-------------------------------------------------------------------------------------------------------LVKNLQDK------EKLLKEK-------------NKVLAS--E-------VG-KL----------------------------KKIL--ETGDERA-----------------------------------------------------VMSPENSSGHSPP--------------------------------------------------------------------------ETLPLLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [205]
'gi|1816459|emb|CAA71739.1| DEFH125 protein [Antirrhinum majus]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIVIQRIDKSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVVIFSST------G---KLYEFSS--T------S-------------------------------------------------------------------------------------------------MKSIIERHTKTKE---DHHQLL--NHGS--E--V-------KF-WQREA-ATLRQQLQD--LQENH-----------------------------------RK-------------------------------LMGE------------ELQ-GLN-VEDLHRLENQL---EMSLRGVRMKKVQMLTD-------------------------------------------------------------------------------------------------------EVHELRRK------GHLIHQE-------------NNELYE--K-------VK-LL----------------------------QQEN--KELCKK-------------------------------------------------------AYGTRDVSAANGTALVPFG----FAIGREQFEP-----------------------------------------------------IQL-HLS---------------------------------------------------------------------------------------------------------------------------------Q-PEPENIETSRASGSK----------------------------------------------------------------------------------------------------------------------------------------------------   [234]
'gi|57999632|dbj|BAD88436.1| MADS-box transcription factor CgMADS1 [Chara globularis]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RAKIEIKRIDNATSRQVTFSKRRNGLLKKAYELSVLCDADIAVIMFSPT------G---KLFEYAN--S------S-------------------------------------------------------------------------------------------------MKEILDRYHSCPP---EQREKR---KFD--N--T-------DY-LSKEA-KRLRHEVEL--AKQEN-----------------------------------RH-------------------------------LSGE------------DLN-AVQ-MPELDGLELKL---EDALRKIRFRKREVMQM-------------------------------------------------------------------------------------------------------EIDRLQQK--------VWTSS-------------PQFLLAWRS-------CH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PAVVQII---------------------------------------------------------------------------------------------------------------------------------IFCSHPAFVPKFILQ------------------------------------------------------------------------------------------------------------------------------------------------------   [192]
'gi|13274178|emb|CAC33848.1| putative MADS-domain transcription factor [Zea mays]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENSTNRQVTFSKRRNGILKKAREISVLCDAEVGVVVFSSA------G---KLYDYCSPKT------S-------------------------------------------------------------------------------------------------LSKILEKYQTNSG---KILWGE--------K--H-------KS-LSAEI-DRIKKENDT--MQIEL-----------------------------------RH-------------------------------LKGE------------DLN-SLQ-PKDLIMIEEAL---DNGLTNLNEK----LME-------------------------------------------------------------------------------------------------------HWERRVTN------TKMMEDE-------------NKLLAF--K-------LH-QQ----------------------------DIAL--SGSMREL-----------------------------------------------------ELGYH-PDRDLAAQMPITFRVQPSHPNLQENN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [209]
lcl|O01g66030.1.71.m12711O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSA------G---KLYDYCSPKT------S-------------------------------------------------------------------------------------------------LSRILEKYQTNSG---KILWDE--------K--H-------KS-LSAEI-DRIKKENDN--MQIEL-----------------------------------RH-------------------------------LKGE------------DLN-SLQ-PKELIMIEEAL---DNGIVNVNDK----LMD-------------------------------------------------------------------------------------------------------HWERHVRT------DKMLEDE-------------NKLLAF--K-------LH-QQ----------------------------DIAL--SGSMRDL-----------------------------------------------------ELGYH-PDRDFAAQMPITFRVQPSHPNLQENN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [209]
lcl|O05g34940.1.75.m27597O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSA------G---KLSDYCTPKT------T--------------------------------------------------------------------------------------------SVFPPLSRILEKYQTNSG---KILWDE--------K--H-------KS-LSAEI-DRVKKENDN--MQIEL-----------------------------------RH-------------------------------MKGE------------DLN-SLQ-PKELIAIEEAL---NNGQANLRDK----MMD-------------------------------------------------------------------------------------------------------HWRMHKRN------EKMLEDE-------------HKMLAF--R-------VH-QQ----------------------------EVEL--SGGIREL-----------------------------------------------------ELGYHHDDRDFAASMPFTFRVQPSHPNLQQEK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [215]
'gi|6840998|gb|AAF28863.1| DEF/GLO-like protein [Pinus radiata]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKMIENATNRQVTFSKRRGGLKKKAQELSVLCNAEVALIIFSST------G---KLHEWSSSSSFFMLQKS-------------------------------------------------------------------------------------------------MKKILERYQKSEQ---GLGLMDY-------Q--H-------QQ-LLCEM-RRITKENES--LQERL-----------------------------------RH-------------------------------MNGE------------EVN-SLK-LPELFKLEEQL---DKAATQVRRRKDHVLEN-------------------------------------------------------------------------------------------------------ERIKQRNK------MRRMEEE-------------NIILHG----------MNQGH----------------------------MEED--NGQFNFV-----------------------------------------------------LYQPVKKMRTAFPAPLLRLQPNQ----------------------------------------------------------------PNLQDIG---------------------------------------------------------------------------------------------------------------------------------Y--------------------------------------------------------------------------------------------------------------------------------------------------------------------   [220]
'gi|29372750|emb|CAD23409.1| putative MADS-domain transcription factor [Zea mays]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------RERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSST------G---KLSQFAS--S------S-------------------------------------------------------------------------------------------------MNEIIDKYSTHSK---NLGKAE--QPSL--D--L-------NL-EHSKY-ANLNEQLVE--ASLRL-----------------------------------RQ-------------------------------MRGE------------ELE-GLS-VEELQQLEKNL---ESGLHRVLQTKDQQFLE-------------------------------------------------------------------------------------------------------QISDLEQK------STQLAEE-------------NRQLRN--Q-------VS-HI----------------------------PPVG--KQSVAD------------------------------------------------------------------TENVIAEDGQSSESVMTALHSGS--SQDNDDGSD-----------------------------------------VSL-KLG---------------------------------------------------------------------------------------------------------------------------------LPCVAWK--------------------------------------------------------------------------------------------------------------------------------------------------------------   [228]
lcl|O08g02070.1.78.m04353O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------RGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAH------G---KLYDLATT-G------T-------------------------------------------------------------------------------------------------MEELIERYKSASG---E--QAN--ACGD--Q--R-------MD-PKQEA-MVLKQEINL--LQKGL-----------------------------------RY-------------------------------IYGN------------RANEHMT-VEELNALERYL---EIWMYNIRSAKMQIMIQ-------------------------------------------------------------------------------------------------------EIQALKSK------EGMLKAA-------------NEILQE--K-------IV-EQ----------------------------NGLI--DVGMMVA-----------------------------------------------------DQQNGHFSTVPLLEEITNPLTILSGYSTCRGSEMG--YSF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [222]
'gi|30681743|ref|NP 179840.2| SVP (SHORT VEGETATIVE PHASE); transcription factor [Arabidopsis thaliana] >gi|10944320|gb|AAG24508'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------REKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSST------G---KLFEFCS--S------S-------------------------------------------------------------------------------------------------MKEVLERHNLQSK---NLEKLD--QPSL--E--L-------QLVENSDH-ARMSKEIAD--KSHRL-----------------------------------RQ-------------------------------MRGE------------ELQ-GLD-IEELQQLEKAL---ETGLTRVIETKSDKIMS-------------------------------------------------------------------------------------------------------EISELQKK------GMQLMDE-------------NKRLRQ--Q-------GT-QL----------------------------TEEN--ERLGMQI-----------------------------------------------------CNNVHAHGGAESENAAVYEEGQSSESITNAGNSTG--APVDSESSD-----------------------------------------TSL-RLG---------------------------------------------------------------------------------------------------------------------------------LPYGG----------------------------------------------------------------------------------------------------------------------------------------------------------------   [240]
'gi|16024|emb|CAA48725.1| globosa [Antirrhinum majus] >gi|417062|sp|Q03378|GLOB ANTMA Floral homeotic protein GLOBOSA'               ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASS------G---KMHEFCSPST------T-------------------------------------------------------------------------------------------------LVDMLDHYHKLSG---KRLWDP--------K--H-------EH-LDNEI-NRVKKENDS--MQIEL-----------------------------------RH-------------------------------LKGE------------DIT-TLN-YKELMVLEDAL---ENGTSALKNKQME-----------------------------------------------------------------------------------------------------------FVRMMRKH------NEMVEEE-------------NQSLQF--K-------LR-QM----------------------------HLDP--MNDNVME------------------------------------------------SQAVYDHHHHQNIADYEAQMPFAFRVQPMQPNLQERF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [215]
'gi|42573453|ref|NP 974823.1| TT16 (TRANSPARENT TESTA16); transcription factor [Arabidopsis thaliana] >gi|19578309|emb|CAC85664.'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSAT------G---KLSEFCSEQN------R-------------------------------------------------------------------------------------------------MPQLIDRYLHTNG---LRLPDH--------HDDQ-------EQ-LHHEM-ELLRRETCN--LELRL-----------------------------------RP-------------------------------FHGH------------DLA-SIP-PNELDGLERQL---EHSVLKVRERKNELMQQ-------------------------------------------------------------------------------------------------------QLENLSRK------RRMLEED-------------NNNMYR--W-------LH-EH----------------------------RAAM--EFQQAGI-----------------------------------------------------DTKPGEYQQFIEQLQCYKPGEYQQFLEQQQQQP------------------------------------------------------NSVLQLA---------------------------------------------------------------------------------------------------------------------------------TLPSEIDPTYNLQLAQPNLQNDPTAQND-----------------------------------------------------------------------------------------------------------------------------------------   [252]
lcl|O06g45650.1.76.m09093O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------QGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDK------G---KLFDFCSPPV------I-------------------------------------------------------------------------------------------------LMELFHRYEITTR---NTRLQE---TNR--D--D-------EQ-MVMEI-TRLRNEIDQ--LEASL-----------------------------------RR-------------------------------QTGE------------DLS-SVSTVDELSQLQLQL---ESSLSKVHARKDELMSQ-------------------------------------------------------------------------------------------------------QLEDMRRM------HQTVHEQ-------------NNFLCR--M-------VT-KI----------------------------LLLN--VITIMIL-----------------------------------------------------AAMISITHARIAL--------------------------------------------------------------------------DDCMQLG---------------------------------------------------------------------------------------------------------------------------------YIVIKQENSWRFWFI------------------------------------------------------------------------------------------------------------------------------------------------------   [221]
'gi|15242208|ref|NP 199999.1| transcription factor [Arabidopsis thaliana] >gi|32402406|gb|AAN52785.1| MADS-box protein AGL72 [Ar'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQK------G---RLYEFAS--S------D-------------------------------------------------------------------------------------------------IRNTIKRYAEYKR---EYFVAETHPIEQ--Y--V-------QG-LKKEM-VTMVKKIEV--LEVHN-----------------------------------RK-------------------------------MMGQ------------SLD-SCS-VKELSEIATQI---EKSLHMVRLRKAKLYED-------------------------------------------------------------------------------------------------------ELQKLKAK------ERELKDE-------------RVRLSL--K-------KT-IY----------------------------THLC--QVGERPM-----------------------------------------------------GMPSGSKEKEDVE--------------------------------------------------------------------------TDL-FIG---------------------------------------------------------------------------------------------------------------------------------FLKNRP---------------------------------------------------------------------------------------------------------------------------------------------------------------   [211]
lcl|O04g52410.1.74.m10135O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGT------G---KMYEYSSPPW------R-------------------------------------------------------------------------------------------------IANIFDRYLKAPS---TRFE------EM--D--V---Q---QR-IIQEM-TRMKDENNR--LRIIM-----------------------------------RQ-------------------------------YMGD------------DLA-SLT-LQDVSNLEQQI---EFSLYKVRLRKQQLLDQ-------------------------------------------------------------------------------------------------------QLLEMHSR------V-----C-------------NKRIYR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FSILPYL------------------IHYIEI----IKF---------------------------------------------------------   [178]
lcl|O02g52340.1.72.m10265O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------RERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSST------G---KLSHFAS--S------S-------------------------------------------------------------------------------------------------MNEIIDKYNTHSN---NLGKAE--QPSL--D--L-------NL-EHSKY-AHLNEQLAE--ASLRL-----------------------------------RQ-------------------------------MRGE------------ELE-GLS-IDELQQLEKNL---EAGLHRVMLTKDQQFME-------------------------------------------------------------------------------------------------------QISELQRK------SSQLAEE-------------NMQLRN--Q-------VS-QI----------------------------SPAE--KQ-VVD------------------------------------------------------------------TENFVTE-GQSSESVMTALHSGSSQSQDNDDGSD-----------------------------------------VSL-KLG---------------------------------------------------------------------------------------------------------------------------------LPCGAWK--------------------------------------------------------------------------------------------------------------------------------------------------------------   [228]
'gi|1944532|emb|CAA69276.1| homeotic protein [Ceratopteris richardii]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RRKIKIKRIENATTRQVTFSKRRGGLLKKAHDLSVLCDAEVAVIIFSSK------G---KLFQFAN--P------S-------------------------------------------------------------------------------------------------METVLGRYVKASR---DPEAGD--NGSS-----T----------DNVEA-DRLTVFTEK--LKMLQ-----------------------------------SN-------------------------------VIGD------------DLE-RLS-LRDLIHLEQQV---HESLGHIRAKKDELILE-------------------------------------------------------------------------------------------------------QIDEFKQK---MADTRRTTNA-------------NTSMLD--R-------LV-DF----------------------------CSSG--ITGSQNI-----------------------------------------------------VESEPG-YVVGVPRTDTLRAGWIATSDQSNDG-PE--YVPCAKRFRITEDLNESPASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [238]
'gi|2981610|dbj|BAA25245.1| transcription factor [Ceratopteris richardii]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------V-------------------RTKIKIKRIENATTRQVTFSKRRGGLFKKAHDLSVLCDAEVAVIIFSSK------G---KLFHFGN--P------S-------------------------------------------------------------------------------------------------METVLKRYMKANG---DPKAGD--NGSS-----T----------DNVEA-DHLTVFTEK--LKLLQ-----------------------------------SV-------------------------------VIGD------------DLE-RLS-VRDIIYLEQQF---HENLGRIRAKKDELMLE-------------------------------------------------------------------------------------------------------RNNDLMQK---MADTRRRTNV-------------NTSMLN--R-------LA-DF----------------------------CSSD--IIGSRTF-----------------------------------------------------VENEPADHVVGVPRTDTSRAGRDCSKRPKQQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [215]
'gi|16549058|dbj|BAB70736.1| putative MADS-domain transcription factor MpMADS1 [Magnolia praecocissima]'                             ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------RGKIQIKKIDNVTARQVTFSKRRRGLFKKAEELSILCDAEVALIIFSAT------G---KLFEYSS--S------S-------------------------------------------------------------------------------------------------MKEIIERHTMHSK---NLQKLD-QQPSL--E--L-------QL-ENSNY-NRLSKQVAE--KSHLI-----------------------------------RQ-------------------------------MRGE------------DIQ-GLT-VEELQKLEKTL---ETGLSRVMERKAEQIMK-------------------------------------------------------------------------------------------------------EISGLQIK------GVKLMEE-------------NMRLRQ--R-------II-EM----------------------------SRGD--SKGDRQI-----------------------------------------------------IE----------SEIVVNEDGQSSDSVTNACNSGA--PQDYESSD------------------------------------------TSL-KLG---------------------------------------------------------------------------------------------------------------------------------VPFSS----------------------------------------------------------------------------------------------------------------------------------------------------------------   [229]
lcl|O06g49840.1.76.m09508O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSST------G---KYHEFCSPST------D-------------------------------------------------------------------------------------------------IKGIFDRYQQAIG---TSLWIE--------Q--Y-------EN-MQRTL-SHLKDINRN--LRTEI-----------------------------------RQ-------------------------------RMGE------------DLD-GLE-FDELRGLEQNV---DAALKEVRHRKYHVITT-------------------------------------------------------------------------------------------------------QTETYKKK------VKHSYEA-------------YETLQQ--E-------LG-LREEPAFGFVDNTGGGWDGGAGAGAAADMFAFRV--VPSQ-----------------------------------------------------------------------------------------------------------------------------------------------PNLHGMA---------------------------------------------------------------------------------------------------------------------------------YGGNHDLRLG-----------------------------------------------------------------------------------------------------------------------------------------------------------   [224]
'gi|15241299|ref|NP 197524.1| PI (PISTILLATA); DNA binding / transcription factor [Arabidopsis thaliana] >gi|493620|dbj|BAA06465'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASN------G---KMIDYCCPSM------D-------------------------------------------------------------------------------------------------LGAMLDQYQKLSG---KKLWDA--------K--H-------EN-LSNEI-DRIKKENDS--LQLEL-----------------------------------RH-------------------------------LKGE------------DIQ-SLN-LKNLMAVEHAI---EHGLDKVRDHQMEILIS-----------------------------------------------------------------------------------------------------------KRRN------EKMMAEE-------------QRQLTF--Q-------LQ-QQ----------------------------EMAI--ASNARGM-----------------------------------------------------MMRDHDGQFGYRVQPIQPNLQEKIMSLVID----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [208]
'gi|2735764|gb|AAB94005.1| MADS transcriptional factor; STMADS16 [Solanum tuberosum]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------REKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSST------G---KLFDFAS--T------S-------------------------------------------------------------------------------------------------MKDILGKYKLQSA---SLEKVD--EPSL--D--L-------QL-ENSLN-MRLSKQVAD--KTREL-----------------------------------RQ-------------------------------MRGE------------ELE-GLS-LEELQQIEKRL---EAGFNRVLEIKGTRIMD-------------------------------------------------------------------------------------------------------EITNLQRK------GAELMEE-------------NKQLKH--K-------ME-IM----------------------------KGKL--PL----------------------------------------------------------------------LTDMVMEEGQSSESIITTNNPDQ--DDSSNASLKLGGTTAVEDDCSI----------------------------TSL-KLG---------------------------------------------------------------------------------------------------------------------------------LPFS-----------------------------------------------------------------------------------------------------------------------------------------------------------------   [234]
lcl|O03g08754.2.73.m35564O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------AGGGGGGGRGEGEGRAATGKRERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSAT------G---KLFQFAS--T------S-------------------------------------------------------------------------------------------------MEQIIDRYNSHSK---TLQRAE--PSQL--D--L-------QGEDSSTC-ARLKEELAE--TSLRL-----------------------------------RQ-------------------------------MRGE------------ELH-RLN-VEQLQELEKSL---ESGLGSVLKTKSKKILD-------------------------------------------------------------------------------------------------------EIDGLERK------RMQLIEE-------------NLRLKE--Q-------VS-RM----------------------------SRME--EMQPGP------------------------------------------------------------------DSEIVYEEGQSSESVTNASYPRP--PPDND---------YSSD--------------------------------TSL-RLG---------------------------------------------------------------------------------------------------------------------------------LSLFSSK--------------------------------------------------------------------------------------------------------------------------------------------------------------   [248]
'gi|16018|emb|CAA44629.1| DEF A protein [Antirrhinum majus] >gi|16020|emb|CAA36268.1| deficiens [Antirrhinum majus] >gi|118426|s'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------RGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISST------Q---KLHEYISPTT------A-------------------------------------------------------------------------------------------------TKQLFDQYQKAVG---VDLWSS--------H--Y-------EK-MQEHL-KKLNEVNRN--LRREI-----------------------------------RQ-------------------------------RMGE------------SLN-DLG-YEQIVNLIEDM---DNSLKLIRERKYKVISN-------------------------------------------------------------------------------------------------------QIDTSKKK------VRNVEEI-------------HRNLVL--E-------FDARREDPHFGLVDNEGDYNSVLGFPNGGPRIIALRL--PTNHHPT-----------------------------------------------------LHSGGGSDL------------------------------------------------------------------------------TTFALLE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [227]
'gi|2981614|dbj|BAA25247.1| transcription factor [Ceratopteris richardii]'                                    -------------------------------------------------------TQKASELGNIHRKSAVSLLSDMSL------------------------------------------------------------------------------------------DKSDTNINASGVTHSPLETESDTRSNLQSSNQPPYR--------------------SPRIAIRRVDNATNRQVTFSKRRNGLLKKASELSILCDAEIAAIVFSST------G---RLSEFAS--S------S-------------------------------------------------------------------------------------------------MDKIIRRYEDLQS---QSASRALLH-----Q--R-------EY-WKNQA-LHLRRQVGC--MNDIQ-----------------------------------SC-------------------------------IMGE------------NAA-ALS-LDELQNTEARL---QIALDKIRTRRNELLAM-------------------------------------------------------------------------------------------------------QTQNIISK------GNGLWIE-------------NTLLRK--R-------ST-SAYDGEMP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [236]
lcl|O03g08754.1.73.m06383O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------AGGGGGGGRGEGEGRAATGKRERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSAT------G---KLFQFAS--T------S-------------------------------------------------------------------------------------------------MEQIIDRYNSHSK---TLQRAE--PSQL--D--L-------QGEDSSTC-ARLKEELAE--TSLRL-----------------------------------RQ-------------------------------MRGE------------ELH-RLN-VEQLQELEKSL---ESGLGSVLKTKSKKILD-------------------------------------------------------------------------------------------------------EIDGLERK------RMQLIEE-------------NLRLKEQLQ-------VS-RM----------------------------SRME--EMQPGP------------------------------------------------------------------DSEIVYEEGQSSESVTNASYPRP--PPDND---------YSSD--------------------------------TSL-RLG---------------------------------------------------------------------------------------------------------------------------------LSLFSSK--------------------------------------------------------------------------------------------------------------------------------------------------------------   [250]
'gi|15233857|ref|NP 194185.1| AGL24; transcription factor [Arabidopsis thaliana] >gi|7269304|emb|CAB79364.1| MADS-box protein AG'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------REKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSAT------G---KLFEFSS--S------R-------------------------------------------------------------------------------------------------MRDILGRYSLHAS---NINKLM-DPPST--H--L-------RL-ENCNL-SRLSKEVED--KTKQL-----------------------------------RK-------------------------------LRGE------------DLD-GLN-LEELQRLEKLL---ESGLSRVSEKKGECVMS-------------------------------------------------------------------------------------------------------QIFSLEKR------GSELVDE-------------NKRLRD--K-------LE-TL----------------------------ERAK--LTTLKE--------------------------------------------------------------------------ALETESVTTNVSSYDSGTPLEDDSD------------------------------------------TSL-KLG---------------------------------------------------------------------------------------------------------------------------------LPSWE----------------------------------------------------------------------------------------------------------------------------------------------------------------   [220]
lcl|O06g11330.1.76.m05850O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------RERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSST------G---KLSQFAS--S------N-------------------------------------------------------------------------------------------------MNEIIDKYTTHSK---NLGKTD-KQPSI--D--L-------NL-EHSKC-SSLNEQLAE--ASLQL-----------------------------------RQ-------------------------------MRGE------------ELE-GLS-VEELQQMEKNL---EAGLQRVLCTKDQQFMQ-------------------------------------------------------------------------------------------------------EISELQRK------GIQLAEE-------------NMRLRD--Q-------MP-QV----------------------------PTAG--LA-VPD------------------------------------------------------------------TENVLTEDGQSSESVMTALNSGS--SQDNDDGSD-----------------------------------------ISL-KLG---------------------------------------------------------------------------------------------------------------------------------LP-------------------------------------------------------------------------------------------------------------------------------------------------------------------   [223]
'gi|15232493|ref|NP 191002.1| AP3 (APETALA 3); DNA binding / transcription factor [Arabidopsis thaliana] >gi|23296740|gb|AAN1315'    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A-------------------RGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSS------N---KLHEYISPNT------T-------------------------------------------------------------------------------------------------TKEIVDLYQTISD---VDVWAT--------Q--Y-------ER-MQETK-RKLLETNRN--LRTQI-----------------------------------KQ-------------------------------RLGE------------CLD-ELD-IQELRRLEDEM---ENTFKLVRERKFKSLGN-------------------------------------------------------------------------------------------------------QIETTKKK------NKSQQDI-------------QKNLIH--E-------LELRAEDPHYGLVDNGGDYDSVLGYQIEGSRAYALRF--HQNHHHY-----------------------------------------------------YPNHGLHAPSASDI-------------------------------------------------------------------------ITFHLLE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [232]
'gi|10880313|emb|CAC13992.1| putative MADS-domain transcription factor GGM16 [Gnetum gnemon]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKKIENPSSRQVTFSKRRGGLIKKARELAVLCDAEIALIIFSST------G---KLTDWCS--H------N-------------------------------------------------------------------------------------------------MKDTLKKFERIAG---SSSAEY--------E--R-------HQ-LRLDI-ETRKRQNEE--LQNLI-----------------------------------NY-------------------------------KLGV------------GID-HLS-CEELECLEEDL---ENIVRNVKRTKDKQEER-------------------------------------------------------------------------------------------------------LTDRLRRR------VGFQQQH-------------LRRFMG--EIRYHDTYVE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KELWEVC---------------------------------------------------------------------------------------------------------------------------------CQLAQEKITAREEKHHGDHHDCALLHFRHE---------------------------------------------------------------------------------------------------------------------------------------   [211]
'gi|3253153|gb|AAC24320.1| MADS-box protein [Ceratopteris richardii]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------P-------------------RRKVKIKRIENGATRQITFSKRRAGLFKKAHDLSVLCDAKVAVIVFSEK------G---RLFEFASP--------S-------------------------------------------------------------------------------------------------MESILKRYMDSQKYLGISEEENSSARLLNGD--------------KHWV-TTLRNRLKM--LRSD---------------------------------------------------------------------LVEL------------DLE-RLS-GGNLIRLEQEM---NYNLGRIRAKKDQLILR-------------------------------------------------------------------------------------------------------EIESYSNK------ELMHKAH-------------KRKEQV----------MNEKA----------------------------ARKV--DCQGPCV-----------------------------------------------------SNSTALENADEEFLQMDRYASYDGDVIDECPSSVK--KS------------------------------------------------MVLQDLN---------------------------------------------------------------------------------------------------------------------------------RLPSEYAQTLVE---------------------------------------------------------------------------------------------------------------------------------------------------------   [240]
lcl|Smo_SrMADS1_17_1_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATNRQVTFSKRRGGLLKKAHELSVLCDAQIALIIFSST------G---KLFEYSS--S------STRYVFSARIHRAVAGWFAFLWNLRAGIAWALSDGSIAWLFGRRIVFLAVSPGEKELKAIERRGSILFVLACWNGLCCGKIWIRYVREPIVAVDGFGCMKEILDRYGRYPE---GNHNTS--IVDH--D--N-------ER-WGREL-IRLKQQIEQ--LQQTH-----------------------------------RH-------------------------------MVGE------------DLI-HLG-IKDLQQLEHRL---LSGLERIRARKDQLIAE-------------------------------------------------------------------------------------------------------QLDELRRK------ELHLQRE-------------NDHLRR--K-------LN-GI----------------------------HSVI--DSGGKPL-----------------------------------------------------ATLNVVATPLETREPPSVT----------------------------------------LPFSIHGQLAPLPAFVEHHPQMLQ----TSL-HLG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [330]
lcl|Smo_SrMADS1_24_1_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGKIEIKRIENATNRQVTFSKRRGGLLKKAHELSVLCDAQIALIIFSST------G---KLFEYSS--S------STRYVFSARIHRAVAGWFAFFWNLRAGIAWALSDGSIAWLFGRRIVFLAVSPGEKEIKAIERRGSILFVLACWNGLCCGKIWIRYVREPIVAVDGFGCMKEILDRYGRYPE---GNHNTS--IVDH--D--N-------ER-WGREL-IRLKQQIEQ--LQQTH-----------------------------------RH-------------------------------MVGE------------DLI-HLG-IKDLQQLEHRL---LSGLERIRARKDQLIAE-------------------------------------------------------------------------------------------------------QLDELRRK------ELHLQRE-------------NDHLRR--K-------LN-GI----------------------------HSVI--DSGGKPL-----------------------------------------------------ATLNVVATPLETREPPSVT----------------------------------------LPFSIHGQLAPLPAFVEHHPQMLQ----TSL-HLG---------------------------------------------------------------------------------------------------------------------------------ELTREMVLCFSFLVGCMNRSHPRLEGLRTAQAMKATAIARLERLRDFSGSQ?-----------------------------------------------------------------------------------------------------------------   [382]
lcl|O01g52680.1.71.m11441O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G-------------------RGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSAS------G---KLYHFLSPTV-----PS-------------------------------------------------------------------------------------------------VREFVERYEATTH---TKVWAD--------I--R-------QE-RRAEL-EKVGSMCDL--LEKQL-----------------------------------RF-------------------------------MTVD------------DGE-EYT-VPSLEALEHNL---EAAMRKVRSEKDRKIGG-------------------------------------------------------------------------------------------------------EICYLQNI------IRGRQEE-------------RYGLCD--K-------IA-HA----------------------------QTLK--DVECGST-----------------------------------------------------SLSNGLDLKLGFN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [196]
lcl|O08g41960.1.78.m08174O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------E------------GGGRRRKRGKVELRRIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPA------G---RLYEFASSTS------S-------------------------------------------------------------------------------------------------IDTIFGRYWDLLD---TTIDLN--IEAR--E-------------------SRVD---CN--IQVWI-----------------------------------RRQIVHGGLAPLLVGDAAPPFRGVGVAPRLALCIYDD------------TPP-RIK-VAKAGGMEGGMMDVNDGLQEFGLHLMIALVW-------------------------------------------------------------------------------------------------------YFMRQGSL-----------GN-------------KGSIS----GTTIIKVSK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [203]
lcl|O01g69850.1.71.m13035O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A------------------RRGRVQLRRIEDKASRQVRFSKRRAGLFKKAFELALLCDVEVALLVFSPV------G---KLYEYSS--S------S-------------------------------------------------------------------------------------------------IEGTYDRYQQFAG---ARRDLN--EGST--S-------------------INSDENAS---IHSRL-----------------------------------RD---------------------------ITAWSLQN------------NAD-ESD-ANQLEKLEKLL---TNALRDTKSKKMLAK---------------------------------------------------------------------------------------------------------QNGEGSRS-----------RA-------------NSSGSRGQE----------------------------------------EGSA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [164]
'gi|40644784|emb|CAE53900.1| putative MADS box-like protein [Triticum aestivum]'                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------A------------------RRGRVELRRIEDRTSRQVRFSKRRAGLFKKAFELAVLCDAEVALLVFSPA------G---KLYEYAS--S------S-------------------------------------------------------------------------------------------------IEGTYDLYQRFAG---AGTNLN--GGDA--S-------------------SNNDGDPSN--IQSTL-----------------------------------KE---------------------------IASWSIQN------------NAD-VSD-ANKLEKLEKLL---TDALRNTKSKKMSAQ---------------------------------------------------------------------------------------------------------QNSGAGTS-----------GE-------------NANGP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [157]
lcl|O04g31804.1.74.m08280O_unnamed_protein_product                                    ----------------------------------------------------------------------------M--------------------------------------------------------------------------------------------------------------------------------G------------------SRGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCS------GDDANPHHFAAP-A------T-------------------------------------------------------------------------------------------------IENIVERYEHSQA---AQKGVH-----------G---RCILQKRKSKDF-QVLKETIDKGPINDDM-----------------------------------RP-------------------------------IDEK------------DIS-TLN-MDQISQIEILL---EDELRWTRARK--VVAD-------------------------------------------------------------------------------------------------------RIARLQKKVQKKPATAETESN-------------STEMPSDHE----------------------------------------KKQV--AGGSQQS-----------------------------------------------------AEEEEEEMEVVLRHRLSLGTGDRDDGGGGAAEQRH--RTTPPPAVDLNVPC------------------------------------RDAGQLQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [249]
;
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