#NEXUS 
[MacClade 4.08 registered to obaramari, ERATO hasebe project]


BEGIN DATA;
	DIMENSIONS  NTAX=70 NCHAR=4741;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|15229153|ref|NP 190519.1| RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); nucleic acid binding [Arabidopsis thaliana] >gi|6899955|emb'    --------------------------MGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGNMKKSVVTQVSIGGFGES----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAKQLTD-YLEDEVG-IVWRCRLKTSWTPPGSYPNFEI----ADTSNIPSIDEYKKVEPHA-----------------------------FVHFA-VFESAGRAMDAAGQ--CNL-IL----------------------------------------DGQPLKV------------------------------------SLGPKNPYSLNQRRRT----------------TVPYKLAGITLEIGTLVSR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDFFV------SWRA------EGVDFLVDPFDNTCKFCFRKS-------TAFSFKDAVMHAVINCDYKLELL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRDIQTVRQYK-TL---------HGF-----VLILQLASSPRVWYR---------------------TAD-DD-------------------------IYDTVPGDLLDDDDPWIRTTD----------FT----------QVGAIGRCHSYRVLIS-P--------RYENKLRTALDYFRMRRVQ--EERVRWPPR--------------------------------------------------------------IRNEPCFGEPVSD-----HFFCIH------------HKEGISFEIMFLVNSVLHRGVFNQ-FQL----------------------------------TERFFDLLRN-------Q---PKDVNIASLKHLCTY-----KR---------PVFDAYKRLKLVQ---------EWIQKNPKLLGSHE-Q----S----------EDISEIRRLVITPTRAYCL----PPEVELSNRVLRRYK-AVAERFLRVTFMDESM------------------------------------------QTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKL-------CGRKYSFL-AFSA-----------------NQLRDRSAWFFA--EDG-------------------------------------------------------K--TRVSDIKTWMG---KFKD-----K--NVAKCAARMGL-----CFSSTYAT---------------VDV-MPHEVDTE---VPDIE------------------RNG---YVFSDGIGTITPDLADEVMEKLK-------------------LD-----------------VH----YSPCAYQIRY----AGFKGVVARWPS-------------------------KS----------DGIRLALR-DSMKKF-----FSK----------------------------HTI-LEICSW-----------TRFQPGFLNRQIITLLSVLGVPDEI---------FWDMQESMLYKL--------NRILDDTDVAFEVLTASC--A--E---Q--------------------GNTAAIMLSAGFKPK--TEPHLRGMLSSVRIAQL-WGLREKSRIFVTS--GRWLMGCLDEAG--ILEHG---------------------QCFIQVSKPSI--------------ENCFSKHGSRFKET--------KTDLEVVKGY-VAIAKNPCLHPGDVRILEAVDV-----------------PQ------------L--HH-----MYDCLIFPQKGD----RPHTNEASGSDLDGDLYFVAWDQKL--IPPNR-KSYPAMHYDA---AEEK---------------SLGRAV------------------------NHQDIIDFFAR--NLANE---------------------------------------------------------------------------------QLGTICNAHVV-HA---DR-----------SEYGAMDEECLLLAELAATAVDFPKTGKI---------VSMPFH--------------LKPKLY-PDFMGK-ED--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQT---YKSN------------------------------KILGRLYRRVKEVYDED---AEA----SSEE-STDPSAIP--YDAVLEI---------------------------------------------------------PGF----------EDLIPEAWG-HKCL------YDGQLIGLLGQYKVQ-----------------------------------------------------------------KEEEIVTGHIWS---MPKYTSK-------KQGELKERLKHSYNSLKKEFR----------------------------------------------------------------KVFEE---TI---------------PDHENLSEEEK--------------------------N--ILYEKKASAWYHVTYHPEWVKKSLE--L-QDPDESS------------HAAML--SFAWIA---A---------------------------------------------DYL-----------------------------------------------------------------------------------------------ARIKIRSREMGSIDSAKPVDSLAKFLAQR--L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1196]
'gi|8248473|gb|AAF74208.1| RNA-dependent RNA polymerase [Arabidopsis thaliana]'                                    --------------------------MGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGNMKKSVVTQVSIGGFGES----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAKQLTD-YLEDEVG-IVWRCRLKTSWTPPGSYPNFEI----ADTSNIPSIDEYKKVEPHA-----------------------------FVHFA-VFESAGRAMDAAGQ--CNL-IL----------------------------------------DGQPLKV------------------------------------SLGPKNPYSLNQRRRT----------------TVPYKLAGITLEIGTLVSR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDFFV------SWRA------EGVDFLVDPFDNTCKFCFRKS-------TAFSFKDAVMHAVINCDYKLELL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRDIQTVRQYK-TL---------HGF-----VLILQLASSPRVWYR---------------------TAD-DD-------------------------IYDTVPGDLLDDDDPWIRTTD----------FT----------QVGAIGRCHSYRVLIS-P--------RYENKLRTALDYFRMRRVQ--EERVRWPPR--------------------------------------------------------------IRNEPCFGEPVSD-----HFFCIH------------HKEGISFEIMFLVNSVLHRGVFNQ-FQL----------------------------------TERFFDLLRN-------Q---PKDVNIASLKHLCTY-----KR---------PVFDAYKRLKLVQ---------EWIQKNPKLLGSHE-Q----S----------EDISEIRRLVITPTRAYCL----PPEVELSNRVLRRYK-AVAERFLRVTFMDESM------------------------------------------QTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKL-------CGRKYSFL-AFSA-----------------NQLRDRSAWFFA--EDG-------------------------------------------------------K--TRVSDIKTWMG---KFKD-----K--NVAKCAARMGL-----CFSSTYAT---------------VDV-MPHEVDTE---VPDIE------------------RNG---YVFSDGIGTITPDLAGEVMEKLK-------------------LD-----------------VH----YSPCAYQIRY----AGFKGVVARWPS-------------------------KS----------DGIRLALR-DSMKKI-----FSK----------------------------HTI-LEICSW-----------TRFQPGFLNRQIITLLSVLGVPVEI---------FWDMQESMLYKL--------DRILVDTDVAFEVLTASC--A--E---Q--------------------GNTAAIMLSAGFKPK--TEPHLRGMLSSVRIAQL-WGLREKSRIFVTS--GRWLMGCLDEAG--ILEHG---------------------QCFIQVSKPSI--------------ENCFSKHGSRFKET--------KKDLEVVKGY-VAIAKNPCLHPGDVRILEAVDV-----------------PQ------------L--HH-----MYDCLIFPQKGD----RPHTNEASGSDLDGDLYFVAWDQKL--IPPNR-KSYPAMHYDA---AEEK---------------SLGRAV------------------------NHQDIIDFFAR--NLANE---------------------------------------------------------------------------------QLGTICNAHVV-HA---DR-----------SEYGAMDEECLLLAELAATAVDFPKTGKI---------VSMPFH--------------LKPKLY-PDFMGK-ED--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQT---YKSN------------------------------KILGRLYRPVKEVYDED---AEA----SSEE-STDPSAIP--YDAVLEI---------------------------------------------------------PGF----------EDLIPEAWG-HKCS------YDGQLIGLLGQYKVQ-----------------------------------------------------------------KEEEIVTGHIWS---MPKYTSK-------KQGELKERLKHSYNSLKKEFR----------------------------------------------------------------KVFEE---TI---------------PDHENLSEEEK--------------------------N--ILYEKKASAWYHVTYHPEWVKKSLE--L-QDPDESS------------HAAML--SFAWIA---A---------------------------------------------DYL-----------------------------------------------------------------------------------------------ARIKIRSREMGSIDSAKPVDSLAKFLAQR--L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1196]
'gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]'                                    --------------------------MGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGSEKDLVVTQISVGGFDND----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNAKMLSE-YLEEQVG-QVWRCRLKISATPPDSYPTYDV-----DAARVHRMKDYEKVVPHA-----------------------------FVHFA-SSESAKYALAAAGG--NGL-IL----------------------------------------GKKPLIV------------------------------------SLGPENPYRLNQRRRT----------------TMPFKFSDVSVEMGVLVSK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDFVV------GWRG----PRTGVDFFVDPFNGACKILFTKD-------TAFSFRGEAKHAIIKCNFKIEFM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VREINEIKKFK-DF---------TSL-----VILLQLASSPLVFYR---------------------TAD-DD-------------------------IEESVAFDLLDDDDQWIRTTD----------IT----------GSGAIGRCNTYRISIR-P--------RNGPSFEKAMAYFSFHRVPMVEMCNRKMLR--------------------------------------------------------------VRDEPDFGVSMSD-----PFFCFQ------------N-EGISFKVMFLVNAVLHKGIVNQ-HQM----------------------------------TNEFFYLLRS-------H---QEEVNLAALKHMFSY-----KW---------PVNDAIQKLVGIQ---------KWLLKNPKLLERTG-E----L----------DDIVEVRRLVITPTKAYCL----PPTVELSNRVLRNYK-HVADRFLRVTFMDEGM------------------------------------------RNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHL-------CGRKYSFL-AFSA-----------------NQLRDRSAWFFA--EDP-------------------------------------------------------K--IRVPGIISWMG---RFSN-----R--NVAKCAARMGQ-----CFSSTYAT---------------VEV-PSSEVNSE---LPDIE------------------RNG---YVFSDGIGMISADLALEVAEKLH-------------------LS-----------------VN-----PPSAYQIRY----AGCKGVVACWPT-------------------------KN----------DGILLSLR-PSMKKF-----DSN----------------------------HTI-LEICSW-----------TRFQPGFLNRQIVTLLSSLDVKDGI---------FWEMQKEMISGL--------NKMLVDSDVAFDVITASC--A--E---A--------------------GNTAAIMLSAGFKPQ--SEPHLRGMLSSIRASQL-GDLRNKARIFVPS--GRWLMGCLDELG--ELEQG---------------------QCFIQVSSPSL--------------ENCFIKHGPKFSDI--------KKNLQVVKGL-VVIAKNPCLHPGDVRILEAVDV-----------------PG------------L--HH-----LYDCLVFPQKGD----RPHSNEASGSDLDGDLYFVTWDENL--IPPSK-KSWIPMNYEP---AEVK---------------QLGRQV------------------------NHMDIIDFFSK--NMVQE---------------------------------------------------------------------------------SLGEICNAHVV-HA---DL-----------SEFGALDEKCLKLAELAALAVDFPKTGKL---------VTMPFD--------------LKPKMY-PDFMGK-EE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FQS---YKSK------------------------------KILGKLYRQVKDVCDTE---GEV----SAGL-ELVPNDIP--YDSSLEI---------------------------------------------------------PGS----------TVFMGDAWN-CKCS------YDGQLHGLLGQYKVN-----------------------------------------------------------------REEEVVTGHIWS---MPKYSAK-------KQGELKERLKHAYNMLRKEFR----------------------------------------------------------------NVFER---MD---------------PDFDLLPDDEK--------------------------N--DMYERKASAWYQVTYNPHWVARSLE--L-QLPDAVS------------STVML--SFAWIA---A---------------------------------------------DYL-----------------------------------------------------------------------------------------------ARINIRHRGLQYSDSTKPINSLGRYLVDN--I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1197]
'gi|34913398|ref|NP 918046.1| putative RNA-directed RNA polymerase [Oryza sativa (japonica cultivar-group)] >gi|21328146|dbj|BAC'    --------------------------MRSPRGGAAAQPSGRRG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DTTAAAAGDLVTTQVSLGGFDAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAAGDLAD-FLEHEVG-LVWRCRVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPHA-----------------------------FVHFA-RPEGARRAADLAGE--TRL-IL----------------------------------------RGKPLRV------------------------------------ASAPDSSLRVS-RRSS----------------IAPFRFPDVRLEVGALPSP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAFLA------AWRG----PDAGLDLSVDPFDGCCRLVFTRD-------TAFTFPGFREVAAIRCDVKLEFP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRDVLEVRLYR-L-----------DC-----SLLLRLAAAPLVHYR---------------------TAD-DD-------------------------FHEPVPFDLLDDDDPWIRTTD----------IT----------PSGAIGRCGVYRISFS-A--------RFWPKMDRALDYMRERRVAIVDCGGGWGPRRG----------------------------------------------LT------------VRDELEFGEPMQD-----VFFCLQ------------HAEGLKFPLLFMVNALVHKGIINQ-HQL----------------------------------TPEFFSLLGR-------S---EENVNVAALRDFWGD-----KF---------PVFDACGRLKKAL---------NRVARNPKLLCS-K-V----G----------DDHAEVRRLVITPTRAYCL----PPEVERSNRVLRHYH-EVADRFLRVTFMDEGM------------------------------------------QVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHM-------CGRKYSFL-AFSS-----------------NQLRDKSAWFFA--EDR-------------------------------------------------------K--TTVEAIRKWMG---RFTS-----K--NVAKHAARMGQ-----CFSSTYAT---------------VTM-RPDEVDES---FDDVV------------------HNE---YIFSDGIGKITPDLALEVAERLQ-------------------L------------------TD----NPPSAYQIRF----AGFKGVIAVWQG-------------------------HG----------DGTRLFLR-PSMRKF-----ESN----------------------------HLV-LEVVSW-----------TKFQPGFLNRQIIILLSSLNVPDSI---------FWQMQETMLSNL--------NNILSDRDVAFEVLTTSC--A--D---D--------------------GNTAALMLSAGFEPR--TEPHLKAMLLAIRSAQL-QDLLEKARIFVPK--GRWLMGCLDELG--VLEQG---------------------QCFIRATVPSL--------------NSYFVKHGSRFSST--------DKNTEVILGT-VVIAKNPCLHPGDVRILEAVDV-----------------PE------------L--HH-----LVDCLVFPQKGE----RPHANEASGSDLDGDLYFVTWDEKL--IPPGK-KSWNPMDYSP---PEAK---------------QLPRQV------------------------SQHDIIDFFLK--NMISE---------------------------------------------------------------------------------NLGRICNAHVV-HA---DL-----------SEYGAMDEKCIHLAELAATAVDFPKTGKL---------AIMPPH--------------LKPKVY-PDFMGK-ED--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQS---YKSE------------------------------KILGRLYRSIQEASNGD-----V----VSQE-VCTPNDLP--YDIDLEV---------------------------------------------------------PGA----------SDFLASAWQ-CKCS------YDAQLSALLSQYRVR-----------------------------------------------------------------TEAELVTGHITF---LVKNSSK-------KQGDIKDRLKTAYSALRKEFK----------------------------------------------------------------STFES---IA---------------SDQCEIGDDEK--------------------------N--LLYEMKASAWYQVTYHPKWVEKSRG--I-LGPDGEE------------IPASL--SFAWIP---V---------------------------------------------DYL-----------------------------------------------------------------------------------------------ARIKLRCHGKVRVEGQKPVERLAAYISER--I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1218]
lcl|Ppa_RDR6SDE1SGS2_2_1_unnamed_protein_product                                    --------------------------MTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P-WISGEV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IELRRVQLQLGTLIGP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QDFLL------SWRV----PGYECSLRISKKRGKTFLFFSYD-------KVMSPNLQDTEP---CEFKLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKEVRKIQTQRGRM---------PEM-----MIVMQLFSPPLISYR---------------------TSQGDG-------------------------VYCTTPVPLPDDEDPWIRTVD----------FS----------PHRSIGRCLTYIISVR-P--------TEYTPFRRMMDFFMEQRLC-----------------------------------------------------------GS------------VLQNLNFLYEEIDCKKGQNYFFVH------------HQKGVPFELMFLVNALVHRGIINM-TSL----------------------------------TQEFYETVM--------S---DRAVSLFALQHMLTY-----TH---------PVFNAVLRVQQVQ---------EWTRKNDKFRQGEKAL----A----------FGSILMYRVLFTPTRGICT----LPVVSRSNRVLRHYH-TLSDRFLRVSFVDEDL------------------------------------------HQISPGSLTVPVSRSVRCLSSTYEYNRTEIHRRILDIVENGFKL-------CGRQYSFL-AFSS-----------------SQMRGGSAWFFA--STG-------------------------------------------------------N--VNTHLIRQWMG---KFPS-----Q--NVAKYAARMGQ-----CFSCSFPT---------------LPV-LKAMV-RK---LPDVV------------------RNG---YIFSDGCGMIAPDFALRVSLSLK-------------------L-------------------D----YTPSVYQIRY----AGYKGVVSTWPI-------------------------PG----------RHSHLGLR-DSMKKF-----ESG----------------------------HTE-LEVVNW-----------SKYLPCYLNRQIICLLSTLKVENAV---------FKSLQDAQVARL--------KAMLGDPNQAYEIVTTSC--S--D---S--------------------HSTAATMLRGGFLPL--KEPHLYELLVSIKFSLL-EDLVSKARIFVPN--GRWVIGCMDETG--LLNYG---------------------QCFIHVSGPVS--------------KACLGGDGNNLGHS--------GL-LQVITGK-VIMVKNPCLHPGDIRILEAVDL-----------------PE------------L--HS-----MVDCLVLPQNGP----RPHPNEVSGSDLDGDVYFTCWDPNL--IPPSG-ESWEPMEYAA---HDSK---------------ILYRPA------------------------NIKDVKNFFVN--SMMND---------------------------------------------------------------------------------KLGFISNAHVA-RA---DK-----------SPEGALDSDCLRLAHLASIAVDFPKTGKN---------ATMPHD--------------LRVNEW-PDFMEK-EG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVT---YQSN------------------------------KVIGELYRSVTKFLKAE---VEQ----HQHADNAVDLDSI--YDYDLQV---------------------------------------------------------PGY----------EVYLDDAWT-KKIS------YDRQLRCMMTHFNVQ-----------------------------------------------------------------REAALIASWLKR---GSPGLRS-------VNRNRGDAFAQSYGVLYEEFR----------------------------------------------------------------AQFEG---LKKGLDPDGYS------EDMVESSSSEI--------------------------KGPTDFAAKASAWYHVTYHPEWKQKALE--IFENSGESS------------PRPLL--SFPWIT---A---------------------------------------------SVL-----------------------------------------------------------------------------------------------SNIKLMKLLKVK---------------EK--E-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1070]
lcl|Smo_RDR6SDE1SGS2_8_1_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEMESPESGGYVELFVRNISYQCKRRAIR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GILEGVVGRESVISCELLSNDNGRSKGRAIVKLSTEHAAVVLHRAGLGLRFAGRKLVANVSNRVQHNPQ------------------------------------------------------------------------------------------------------------------------------------------------------------HPNARAGSAKLYCGNLAED------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QTVEYLWCSSQAKAEFFFSDP-------VK-------VELLVDGDYKMEII------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSSIASLESCKISP---------ENSP----GLVFQLYYPPRVYKR----------------------LENSC-------------------------SIFSYSRADICDDYLWARATD----------FT----------PDSALGQSVVFCLELPDS---------SQDELRKIIQKFNDYNLG----------------------------------------------------------------------------DYPPRFRRMVLRRGQPFSVRQ--LAVPVLSST-CGFDLPLEVEFKVNYLIQNGHVSP-AGL----------------------------------TREFFGLLSEN----------TPAWCLSALSNLERC-----EK---------TCLNPASQIRNYM---------RTTNRRRERYLGAVAAD--------------EGQIYVKRVLVTPLKVYFI----GPELEESNRVTRHFS-HKLDNFLRVTFVDEDF------------------------------------------DSLSSYVLS-----------SSRGRTNTEVYYRLLAILRLGIKL-------CGKDFQFL-AFSA-----------------SQLRENSLWMFA--DDD-------------------------------------------------------E--VTGEYIRQWMG---DFLS----IR--NVAKCAARMGQ-----SFSTSTRT---------------LDV-PRGEV-RQ---LSDVETFTPE-------------GHK---YCFSDGIGTISTEFATRVARRCR-------------------AS-----------------------TVPSAFQIRY----GGYKGVVAVDPA-------------------------SC------------FKLSLR-PSMSKF-----PSE----------------------------QTT-LDVLEK-----------TRYIPSYLNREIISLLSTLEVPDEV---------FERMQAHQVELL--------DRMLLDSAATYDVLRVLYAGE------C--------------------HKLLVSMVLAGFSPV--TEPYMRSLLQAFRAAQL-LSLEKKSRIFVPK--GRLLMGCLDEQR--VLRYG---------------------QCFVQVSPLQG---------------------VPVEEEIHCDRGVTARNQAFVVTGS-VVVAKNPCLHPGDVLVLEAVDV-----------------PE------------L--HH-----MVDCIVFPQQGP----RPHPNECSGSDLDGDQYFVSWDSAL--IPP---KRHPPMNYEA---PPAV---------------ELDHS----------------------------EIQEFFVN--WITSD---------------------------------------------------------------------------------SLGVIAHAHLA-LS---DW-----------SDLQARDPKCMELARLYSVAVDFPKTGVP---------AVMPPE--------------LRPEQY-PDFMEK-RN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRT---YIST------------------------------RVIGKLYRSIRE--SHR---DTN----TSPLVSERSFDQQ--YDRALVV---------------------------------------------------------QGY----------QSHLEEAKF-FKEC------YDSKLTSILNHYKV------------------------------------------------------------------SEAEIMSGSVRS---LARYSRR-------RQGDAMARVVLAAKALVKEAR----------------------------------------------------------------GWFDD----------------------GGEITENE--------------------------------ACAKAFAWYHVTYHPEARK---------------------------KSDLL--SFPWVVS------------------------------------------------DKL-----------------------------------------------------------------------------------------------VAIKKRNSARS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1102]
'gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Lycopersicon esculentum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSAEVVKS-FLEKYTG-YGTVCALEVKQSK---GGSRAF----------------------A-----------------------------KVQFA-DNISADKIITLA-N--NRL-YF----------------------------------------GSSYLKA------------------------------------WEMKTDIV-----QLR----------------AYVDQMDGITLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKFA--------VLG----S-TEVSIQFGIGLKKFFFFLSSG--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLIQLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQWVRTTD----------FP----------P-SWIGLSSSLCLQFRRG--------VRLPNFEESFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFVSQKSALVPNVQPP-EGISIPYKILFKISSLVQHGCIPG-PAL----------------------------------NVYFFRLVDPR-----RR---NVACIEHALEKLYYI-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTDLL-PK---AST-GS--GV-RTNIYERILSTLRKGFVI-------GDKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRAWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSRET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISGDFAHRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVGVDPD-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NIK-LDVLGW-----------SKYQPCYLNRQLITLLSTLGVKDEV---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYKPD--AEPFLSMMLQTFRASKL-LDLRTRSRIFIPN--GRTMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------GE-------FSDDLHPFNNSRSTNSNFILKGN-VVVAKNPCLHPGDIRVLKAVNV-----------------RA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIIANAHVV-FA---DR-----------EPDMAMSDPCKKLAELFSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTS---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----SIATFTRDVARRS--YDADMEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---ASKTFDR-------RKD--AEAISVAVRALRKEAR----------------------------------------------------------------AWFKR---RN------------------D---IDD--------------------------------MLPKASAWYHVTYHPTYWGCYNQ--G-----LK-------------RAHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKDKARN--RPVLNLSSLRAQLSHRLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1114]
'gi|47824908|gb|AAT38684.1| RNA-directed RNA polymerase [Solanum demissum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPAEVVKS-FLEKHTG-YGTVCALDVKQSK---GGSRAF----------------------A-----------------------------KVQFV-DNISADKIINLA-S--KRL-YF----------------------------------------GSSYLKA------------------------------------WEMKTDIV-----QV-----------------AYVDHMDGITLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKFA--------VLG----S-TEVSIKFGIGLKKIYFFLSRG--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLIQLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQWVRTTD----------FA----------P-SWIGLSSSLCLQFRRG--------VHLPNFQEKFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFISQKSSLVPNVQPP-EGIAIPYKILFKISSLVQHGCIPG-PAL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELL-PK---AST-GN--GI-RTNIYERILSTLRKGFVI-------GDKKIEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSKET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NNK-LDVLEW-----------SKYQPCYLNRQLITLLSTLGVKDDV---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIISNAHVV-FA---DR-----------EPDMAMSDPCKKLAELCSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDKPPD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----STAIFTRDVARRS--YDADLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDSKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---TSKTFDR-------RKD--AEAISIAVRALRKEAR----------------------------------------------------------------TWFKR---HN------------------D---IDD--------------------------------MLPKASAWYHVTYHPTYWGCYNQ--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKEKARN--RPVLNLSYLRAQLSRKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1114]
'gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGKTLQVSGFPAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNVHHVKD-LLEQIVG-LGKVCAVKLRPPKNISANSRSF----------------------A-----------------------------IVQFE-TEAHASLVVNAARG--NAL-RS----------------------------------------GSNYLKV------------------------------------RPAERDII----LKPR----------------TALFNLEDATLHFGCLLRE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVLS--------VLW----SGTGVSVEFGFAMKKIDFCLTYN--------L-------------KKYKLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YESIWEIQLYHPPG---------SQKK----FLLIQVMAAPKIYEQNLWHSGSMYDDPLFN-------------------------------------------YFRDDTDDQWTRTTD----------FT----------PLASIGQSYILCLELPAD--------CYLPNIREYFVYYKNHN------------------------------------------------------------------------------------HDFHCMRGHSY--SSNSCFVPIVKSQ-YFTDVPYEILFKINNLVQNGILSG-PTL----------------------------------DDNFYSLVSPG-----YV---CIDHIKHALENMSYL-----KK---------TCLNPINWLSEKY---------KEIQIS-RHMLTSPNIA-LDD----------DGLAYVYRVQITPAKVYFY----GPEINVSNRVVRNYS-ADLENFLRISFVDEDC------------------------------------------EKLRSTDLS-PR---SAP-GN--NASRTALYNRILSVLSNGITI-------GNKHFEFL-AFSS-----------------SQLRDNSAWMFA--SRT-------------------------------------------------------G--LSASDIREWMG---NFRN----IR--NVAKYAARLGQ-----SFSASTET---------------LKV-HKYEV-QA---LPEV---TN--------------GTK---YVFSDGIGTISADFADEVSRKCK-------------------LA------------------R----FTPSAFQIRY----GGYKGVVAIDPR-------------------------SH------------WKLSLR-SSMSKF-----PSE----------------------------NIT-LDVLAY-----------SKYQPCFLNRQLITLLSTLGVRDNI---------FELKQQAAVMQL--------NRLVTEPQAAIDAIELMPM-G--E---I--------------------TNVVKELLLCGYQPD--VEPYLSMILQTFRASKL-LELKTKSRIFIPE--GRAMMGCLDETR--TLKYG---------------------EVFIQAS------------------------------------NSANESDKFVVTGK-VVVAKNPCLHPGDIRILEAVYT-----------------PV------------L--DH-----MVNCVVFPQQGP----RPHPNECSGSDLDGDIYFVSWDPDL--IPT---RMVAPMDYTP---APTE---------------TLDHDV------------------------VIEEVHEYFAN--YIVNE---------------------------------------------------------------------------------SLGIIANAHVV-FA---DK-----------ESLKAESTQCIKLAELFSIAVDYPKTGVP---------AQIPSK--------------LHVREY-PDFMEK-LD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAT---YISK------------------------------GVIGKLYREIKK--QSP---H-------IGHFTKDVARRS--YDTDLIV---------------------------------------------------------DGY----------QDYITEAVW-FKGE------YDFKLGNLMEHYGIK-----------------------------------------------------------------SEAEIISGCILK---MAKNFTK-------SSD--ADAIRLAVKSLRKEAR----------------------------------------------------------------SWFSD---MS------------------A---DESG--------------------------DVHEASYAKASAWYHVTYHPEYYGCYNK--I-----YE-------------RPHLI--SFPWCV---Y---------------------------------------------DKL-----------------------------------------------------------------------------------------------LHIKQRKSLR--RRLLDLQN---GMRRNNILG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1115]
'gi|15223906|ref|NP 172932.1| RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding [Arabidop'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSAEEVKK-FLERLTG-SGTVYAIKVRQPK--KGGPRVY----------------------A-----------------------------IVQFT-SERHTRLIITAA-A--ERL-YY----------------------------------------GRSYLKA------------------------------------FEVEQDIV----PKPR----------------ASLHTISGLKMFFGCQVST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKFL--------TLW----SAQDVCVSFGIGMRKLHFSFSWY--------Q-------------KDYRLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQIDLHSPQG---------RSSK----FLVIQVIGAPKIFEKEDQPIN--LLFGIMD-------------------------------------------FYSDGSDEQWIRTTD----------FT----------SSSCIGQSTAFCLELPVH--------LNVPDFRENFANYAEHR------------------------------------------------------------------------------------ASSFLIESGSSYSSNANTLVPVVDPP-PGFSLPFEILFKLNTLVQNACLSG-PAL----------------------------------DLDFYRLLNQK-----KY---DRALIDHCLEKLFHL-----GE---------CCYEPAHWLRDEY---------KKWISK-GKLPLSPTIS-L-D----------DGLVYMYRVQVTPARVYFS----GPEVNVSNRVLRHYS-KYINNFLRVSFVDEDL------------------------------------------EKVRSMDLS-PR---SST-QR-----RTKLYDRIYSVLRDGIVI-------GDKKFEFL-AFSS-----------------SQLRENSAWMFA--PID-------------------------------------------------------R--ITAAHIRAWMG---DFDH----IR--NVAKYAARLGQ-----SFSSSRET---------------LNV-RSDEI-EV---IPDVEIISL--------------GTR---YVFSDGIGKISAEFARKVARKCG-------------------LT------------------E----FSPSAFQIRY----GGYKGVVAVDPN-------------------------SS------------KKLSLR-KSMSKF-----ESE----------------------------NTK-LDVLAW-----------SKYQPCYMNRQLITLLSTLGVTDSV---------FEKKQREVVDRL--------DAILTHPLEAHEALGLMAP-G--E---N--------------------TNILKALILCGYKPD--AEPFLSMMLQNFRASKL-LELRTKTRIFISG--GRSMMGCLDETR--TLEYG---------------------QVVVQYS------------------------------------DPMRPGRRFIITGP-VVVAKNPCLHPGDVRVLQAVNV-----------------PA------------L--NH-----MVDCVVFPQKGL----RPHPNECSGSDLDGDIYFVCWDQEL--VPP---RTSEPMDYTP---EPTQ---------------ILDHDV------------------------TIEEVEEYFAN--YIVND---------------------------------------------------------------------------------SLGIIANAHTA-FA---DK-----------EPLKAFSDPCIELAKKFSTAVDFPKTGVA---------AVIPQH--------------LYVKEY-PDFMEK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPT---YESK------------------------------NVIGKLFREVKE--RAP---PLI----SIKSFTLDVASKS--YDKDMEV---------------------------------------------------------DGF----------EEYVDEAFY-QKAN------YDFKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMR---MSKSFTK-------RRD--AESIGRAVRALRKETL----------------------------------------------------------------SLFNA---SE------------------E---EEN--------------------------------ESAKASAWYHVTYHSSYWGLYNE--G-----LN-------------RDHFL--SFAWCV---Y---------------------------------------------DKL-----------------------------------------------------------------------------------------------VRIKKTNLGR-----RQRQETLERLDHVLRFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1107]
'gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSAEAVKK-FLENHTG-NGTVYALEVKQSK---GGRRAF----------------------A-----------------------------KVQFA-NNKSAEFIIDLA-S--KGL-YY----------------------------------------GPSYLKA------------------------------------WEMKTDIV-----QPR----------------TYVEHMDGVTLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKFA--------VLG----S-KDVSIKFGIGLKKIYFFLSHA--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLLQLFGAPRIYKR--------LEDSCYS-------------------------------------------FFKETPDDQWVRTTD----------FT----------P-SWIGLSSSLCLEFRNG--------VQLPNFSESFFYYKESM------------------------------------------------------------------------------------NQFILQTGFTFSFSQKLALVPIVHLP-EGIELPYKILFKISSLIQHGCFPG-LAL----------------------------------NFNFFQLVDPR-----RR---NIACIEHALEKLYYL-----KE---------CCYDPVRWLTEQY---------DEYLKG-RQLPKSPPIT-L-D----------DGLVYVRRVVVTPCKVYFC----GPEVNVSNRVLRNYS-EDINNFLRVSFVDEEW------------------------------------------EKIHSTDLL-PR---AST-GN--GT-RTDIYERILSTLRNGFII-------GDKRFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFRQ----IR--NVAKYAARLGQ-----SFGSSRET---------------LSV-GRHEV-EV---IPDVACSLH--------------GTN---YIFSDGIGKISADFAHRVTIKCG-------------------L-------------------Q----YTPSSFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMLKY-----ESN----------------------------NIK-LDVLGW-----------SKYQPCYLNRQLVTLLSTLGVIDDV---------LEQKQNEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKEMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTRTRIFIPN--GRTMMGCLDESR--TLEYG---------------------QVFVQFSGAGR--------------RQ-------FFEESHPFNDSGSANCDFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDPDL--IPP---RQVQSMDYTP---APTT---------------QLDHDV------------------------TIEEVEEYFTN--YIIND---------------------------------------------------------------------------------SLGIIANAHVV-FA---DR-----------EPDMAMSDPCKQLAQLFSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMEK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPT---YPSE------------------------------KVIGKLFQKVKN--KTP---QAS----SIATFTRDVARKS--YDSDMIV---------------------------------------------------------DGF----------EDYIDEAFY-YKSE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---ASKTFDR-------RKD--AEAIGVAVRCLRKEAR----------------------------------------------------------------AWFKR---RS------------------D---IDD--------------------------------MLAKASAWYHVTYHHTYWGLYNE--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKAKARK--RPVPHLSSLGSQLSRKLVIW-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1116]
'gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSAEEVKK-FLERLTG-SGTVYAIKVRQPK--KGGPRVY----------------------A-----------------------------IVQFT-SERHTRLIITAA-A--ERL-YY----------------------------------------GRSYLKA------------------------------------FEVEQDIV----PKPR----------------ASLHTISGLKMFFGCQVST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKFL--------TLW----SAQDVCVSFGIGMRKLHFSFSWY--------Q-------------KDYRLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQIDLHSPQG---------RSSK----FLVIQVIGAPKIFEKEDQPIN--LLFGIMD-------------------------------------------FYSDGSDEQWIRTTD----------FT----------SSSCIGQSTAFCLELPVH--------LNVPDFRENFANYAEHR------------------------------------------------------------------------------------ASSFLIESGSSYSSNANTLVPVVDPP-PGFSLPFEILFKLNTLVQNACLSG-PAL----------------------------------DLDFYRLLNQK-----KY---DRALIDHCLEKLFHL-----GE---------CCYEPAHWLRDEY---------KKWISK-GKLPLSPTIS-L-D----------DGLVYMYRVQVTPARVYFS----GPEVNVSNRVLRHYS-KYINNFLRVSFVDEDL------------------------------------------EKVRSMDLS-PR---SST-QR-----RTKLYDRIYSVLRDGIVI-------GDKKFEFL-AFSS-----------------SQLRENSAWMFA--PID-------------------------------------------------------R--ITAAHIRAWMG---DFDH----IR--NVAKYAARLGQ-----SFSSSRET---------------LNV-RSDEI-EV---IPDVEIISL--------------GTR---YVFSDGIGKISAEFARKVARKCG-------------------LT------------------E----FSPSAFQIRY----GGYKGVVAVDPN-------------------------SS------------KKLSLR-KSMSKF-----ESE----------------------------NTK-LDVLAW-----------SKYQPCYMNRQLITLLSTLGVTDSV---------FEKKQREVVDRL--------DAILTHPLEAHEALGLMAP-G--E---N--------------------TNILKALILCGYKPD--AEPFLSMMLQNFRASKL-LELRTKTRIFISG--GRSMMGCLDETR--TLEYG---------------------QVVVQYS------------------------------------DPMRPGRRFIITGP-VVVAKNPCLHSGDVRVLQAVNV-----------------PA------------L--NH-----MVDCVVFPQKGL----RPHPNECSGSDLDGDIYFVCWDQEL--VPP---RTSEPMDYTP---EPTQ---------------ILDHDV------------------------TIEEVEEYFAN--YIVND---------------------------------------------------------------------------------SLGIIANAHTA-FA---DK-----------EPLKAFSDPCIELAKKFSTAVDFPKTGVA---------AVIPQH--------------LYVKEY-PDFMEK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPT---YESK------------------------------NVIGKLFREVKE--RAP---PLI----SIKSFTLDVASKS--YDKDMEV---------------------------------------------------------DGF----------EEYVDEAFY-QKAN------YDFKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMR---MSKSFTK-------RRD--AESIGRAVRALRKETL----------------------------------------------------------------SLFNA---SE------------------E---EEN--------------------------------ESAKASAWYHVTYHSSYWGLYNE--G-----LN-------------RDHFL--SFAWCV---Y---------------------------------------------DKL-----------------------------------------------------------------------------------------------VRIKKTNLGR-----RQRQETLERLDHVLRFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1107]
'gi|53749452|gb|AAU90307.1| RNA-directed RNA polymerase [Solanum tuberosum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPAEVVKS-FLEKHTG-YGTVCALDVKQSK---GGSRAF----------------------A-----------------------------KVQFV-DNISADKIINLA-S--KRL-YF----------------------------------------GSSYLKA------------------------------------WEMKTDIV-----QV-----------------AYVDHMDGITLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKFA--------VLG----S-TEVSIKFGIGLKKIYFFLSRG--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLIQLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQWVRTTD----------FA----------P-SWIGLSSSLCLQFRRG--------VHLPNFQESFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFISQKSALVPNVQPP-EGIAIPYKILFKISSLVQHGCIPG-PSL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELL-PK---AST-GN--GI-RTNIYERILSTLRKGFVI-------GDKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSTET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NNK-LDVLGW-----------SKYQPCFLNRQLITLLSTLGVKDDI---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVNV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDPDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIISNAHVV-FA---DR-----------EPDMAMSDPCKKLAELCSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDKPPD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----STAIFTRDVARRS--YDADLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMEYYGIK-----------------------------------------------------------------TEAEILSGGIMK---TSKTFDR-------RKD--AEAISIAVRALRKEAR----------------------------------------------------------------TWFKR---RN------------------D---IDD--------------------------------MLPKASAWYHVTYHPTYWGCYNQ--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKEKARN--RPVLNLSYLRAQLSRKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1114]
'gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGKTLQVSGFPST----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNADHVKD-LLEQIVG-TGNVFAVKLRPPKNISANSRSF----------------------A-----------------------------IVQFQ-SEAHASLVLNAAQR--NAL-RS----------------------------------------GSHYLKA------------------------------------RYAERDIV----PRPR----------------TTIFNLQGAKLHFGCLLKE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVLS--------VLW----SGTDVSVEFGFAMKRIDFCLIYN--------S-------------KKYKLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YESIWEIQLHRPPG---------LQKK----FLLIQVQAAPKIYEQNIRLSGSMYDDPLFN-------------------------------------------YFRDDTDDQWTRTTD----------FT----------PSASIGQSYILSLELPHI--------CYLPNIREYFVYYEVHN------------------------------------------------------------------------------------DIFNLQPGYSY--SSNTCFVPVVKSH-YFTDVPYEILFKINHLVQNGTLSG-PTL----------------------------------DDNFYRLVSPG-----YE---RIDRIKRALEKMSYL-----KK---------TCLNPTNWLSEQY---------KKMRRS-R-VLTSPNIT-LDD----------DGLVYVYRVQITPAKVYFY----GPEINVSNRVVRNYA-ADLDNFLRISFVDEDC------------------------------------------EKLRSTDLS-QR---SAP-GN--NTRRTALYNRVLSVLSNGITI-------GDKHFDFL-AFSS-----------------SQLRDNSAWMFA--SRP-------------------------------------------------------G--LSASDIREWMG---NFRN----IR--NVAKYAARLGQ-----SFSSSTET---------------LKV-HKYEV-KE---APDV---TN--------------GTE---YVFSDGIGTISADFADEVSKKCN-------------------LT------------------R----FTPSAFQIRY----GGYKGVVAIDPT-------------------------SQ------------WKLSLR-KSMSKF-----QSD----------------------------NIT-LDVLAY-----------SKYQPCFLNRQLITLLSTLGVIDSI---------FELKQQEAVQQL--------NRMVAEPQAAIDAIELMPM-G--E---I--------------------TNIVKELLLCGYRPD--VEPYVSMLLQTFRASKL-LELKTRSRIFVPK--GRAMMGCLDETR--TLKYG---------------------QVFIQAS------------------------------------NSADDRGKSVVTGK-VIVAKNPCIHPGDIRILQAVHS-----------------PL------------L--GH-----MVNCVVFPQLGP----RPHPNECSGSDLDGDIYFVSWDPDL--IPT---RMVAPMDYTP---APTE---------------TLDHDV------------------------MIEEVHEYFTN--YIVNE---------------------------------------------------------------------------------SLGIIANAHVV-FA---DR-----------QSLKAESTQCIKLAELFSIAVDYPKTGVP---------AQIPHE--------------LHVKEY-PDFMEK-LD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAT---YVSE------------------------------GVIGKLYREIKK--QNP---H-------IRHFTKDVATLS--YDTDLIV---------------------------------------------------------DGY----------QDYITEAVW-FKEE------YDFKLGNLMEHYGIN-----------------------------------------------------------------SEAEIISGCILK---MAKNFTK-------KSD--ADAIRLAVKSLRKEAR----------------------------------------------------------------SWFSE---MG------------------S---DESG--------------------------DGHKALVAKASAWYHVTYHPQYWGCYNE--G-----YDH------------RPHLI--SFPWCV---Y---------------------------------------------DKL-----------------------------------------------------------------------------------------------ILIKQKKNIA--RKMLDLQN---RMRRNTILG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1115]
'gi|47824981|gb|AAT38754.1| RNA-directed RNA polymerase [Solanum demissum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EHLSVFQIYNLG-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQWVRTTD----------FA----------P-SWIGLSSSLCLQFRRG--------VHLPNFQESFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFISQKSALVPNVQPP-EGIAIPYKILFKISSLVQHGCIPG-PSL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELL-PK---AST-GN--GI-RTNIYERILSTLRKGFVI-------GDKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSKET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLTLR-KSMSKY-----ESD----------------------------NNK-LDVLGW-----------SKYQPCFLNRQLITLLSTLGVRDDI---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIISNAHVV-FA---DR-----------EPDMAMSDPCKKLAELCSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDKPPD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----STAIFTRDVARRS--YDADLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---TSKTFDR-------RKD--AEAISIAVRALRKEAR----------------------------------------------------------------TWFKR---RN------------------D---IDD--------------------------------MLPKASAWYHVTYHPTYWGCYNQ--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKEKARN--RPVLNLSYLRAQLSRKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [963]
lcl|Ppa_RDR6SDE1SGS2_4_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FEELDAVKIVAVRG---------ASTR----ALLLQLRTPPYLYVQ--------RASKCRSRETILDMIIGTP-------------------------SLDPHYVHTEEEEGLWVRTVD----------YT----------PKRSIGQCLSYLLKISNT--------KTGDDMNDLFKKLAEFHLA----------------------------------------------------------------------------AYPPVIQQISLQKGAPFASSQ--VLVPIVDAP-PEKKVNFELMFQVNQLLQTSKLIG-ETL----------------------------------DSRFYHLLQPD-----VT---PHEQAKLVLERLGKR-----VG---------PCWDPVKEIQEEL---------GNMKET-LSSPRSVSIK-L-A----------SGMTWVRRVLVTPTKVYCT----GPEVDTSNRVTRQFA-SHSDRFMRMSFVDENL------------------------------------------EPLSSVALSVPRRGGAQD-GV--DAERSLLYNRVLKTLKEGIVI-------GDHKFEFL-AFSS-----------------SQLREHSVWMFA--SYA-------------------------------------------------------Q--LTATMIRAWMG---DFLT----IR--NVAKCAARMGQ-----CFSSSKPT---------------LEV-PEQEV-EQ---IPDIEREDE------------FGMSK---YCFSDGIGKISKEFAKEVAKRLQ-------------------M-------------------E----VVPSAFQIRY----GGYKGVVAVDPH-------------------------SD------------FKISLR-PSMRKF-----ASK----------------------------HVG-LDILAS-----------SRFLPSYLNRQIILLLSTLGIEDSV---------FEQMQHRMVSEL--------NDMLKDGDVARDMLQ--------------------------------------------------------MLLEAFRASQL-VDLRKRSRILEPK--GRVLMGCLDETK--SLSYG---------------------EIFLQVTPALG--------------RRKGLRDGLETFDSYPIGSAANQNIAYVVTGW-VIVAKNPCLHPGDIRKLKAVDG-----------------PG------------L--RH-----MVDCLVFPQKGH----RPHPNECSGSDLDGDLYFVSWDEDL--IPL---NTDEPMDYTS---PGAM---------------TLDH----------------------------HEIQEFFVK--YMVTD---------------------------------------------------------------------------------SLGVISNAHVV-NA---DI-----------EPAMARSTACQELAKLVSLAVDFPKTGVP---------AIIPQN--------------LRPTKY-PDFMEK-GD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KET---YKSE------------------------------RVLGKLFRQVKD--ASL---EKL----PCEIPREDI-ERA--FDPVMVI---------------------------------------------------------TGY----------EEFIDMAKF-HKNE------YDRKLIGLMNQYGIE-----------------------------------------------------------------TEAEAVSGYMLN---LARQYVK-------RREDVVERIRDAVRSLINEAR----------------------------------------------------------------QRFDE---NA------------------DDMVDDD--------------------------------IYAKASAWYHVTYHPEHIKVSAT--G-----R?--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [940]
'gi|53689719|gb|AAU89734.1| RNA-directed RNA polymerase-like [Solanum tuberosum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPAEVVKS-FLEKHTG-YGTVCALDVKQSK---GGSRAF----------------------A-----------------------------KVQFV-DNISADKIINLA-S--KRL-YF----------------------------------------GSSYLKA------------------------------------WEMKTDIV-----QV-----------------AYVDHMDGITLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKFA--------VLG----S-TEVSIKFGIGLKKIYFFLSRG--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLIQLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQW-----------------------------------------FRRG--------VHLPNFQESFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFISQKSALVPNVQPP-EGIAIPYKILFKISSLVQHGCIPG-PSL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELL-PK---AST-GN--GI-RTNIYERILSTMQKGFVI-------GDKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSKET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NNK-LDVLGW-----------SKYQPCYLNRQLITLLSTLGVKDDI---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIISNAHVV-FA---DR-----------EPDMAMSDPCKKLAELCSIAVDFPKTGVP---------AEIPSQ--------------WRPKEY-PDFMDKPPD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLYRKVKD--KAP---QAS----STAIFTRDVARRS--YDADLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---TSKTFDR-------RKD--AEAISIAVRALRKEAR----------------------------------------------------------------TWFKR---RN------------------D---IDD--------------------------------MLPKASAWYHL-----------Q--Q-----AD-------------EDDFV----------------------------------------------------------QR-----------------------------------------------------------------------------------------------IMVPKSSSLYYFPDIIALELYTKEFKRKKSD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1076]
'gi|47824911|gb|AAT38687.1| RNA-directed RNA polymerase [Solanum demissum]'                                    ---------------------------MVDGYEALGCPLVKHL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NVELHLEFGYMGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSAEVVKS-FLEKHTG-YGTVCALEVKQSK---RGSRAF----------------------A-----------------------------KVQFV-DNISADKIINLA-S--KRL-YF----------------------------------------GSSYLKA------------------------------------WEMKADIV-----QLR----------------AYVDHMDGITLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D---------------------------------------NG--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLIQ-----------------------------------------------------------------------ETPDDQWVRTTD----------FA----------P-SWIGLSSSLCLQFRRG--------VHLPNFQESFFHYTERE------------------------------------------------------------------------------------NNITLQTGFTFFVSQKSALVPNVQPP-EGIAIPYKILFKISSLVQHGCIPG-PAL----------------------------------DVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTDLL-PK---AST-GN--GI-RTNIYERILSTLRKGFVI-------GDKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSKET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NNK-LDVLGW-----------SKYQPCYLNRQLVTLLSTLGVKDDV---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TTILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTRSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGKSFDDRPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIIANAHVV-FA---DR-----------EPDMAMSDPCKKLAELFSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----SIAIFTRDVARRS--YDVDLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---TSKTFDR-------RKD--AEAISIAVRALRKEAR----------------------------------------------------------------TWFKR---RN------------------D---IDD--------------------------------MLPKASAWYHL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IQIKKEKALN--RPVLNLSSLRAQLSHKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1068]
'gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CIEHALEKLYNL-----KE---------CCYDPVRWLTKQY---------DEYLKR-RQLPKSPSIT-L-D----------DGLMYVRRVLVTPCKVYFL----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKIFSMDLL-PR---ANR--N--GI-RTDIYERILSTLQNGLVI-------GAKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTAYDIRTWMG---DFQQ----IR--NVAKYAARLGQ-----SFGSSRET---------------LSV-GRHEI-KY---IPDV--EVH--------------GTN---YVFSDGIGKISADFAHRVAKKCG-------------------L-------------------Q----HTPSAFQIRY----GGYKGVVAVDPY-------------------------SP------------MKLSLR-KSMLKY-----ESN----------------------------NTK-LDVLGW-----------SKYQPCYLNRQLVTLMSTLGVKDEV---------FKRKQNEAVAQL--------DAILHDSLKAQEALDLMSP-G--E---N--------------------TNILKEMLNCGYLPD--AEPFLSMMLQTFRASKL-LDLRTRTRIFIPK--GRSMMGCLDESR--TLEYG---------------------QVFVQFTGAGG--------------RQ-------FYEESHHFNDSGSANYNFILKGN-VVVAKNPCLHPGDIRVLKAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDPDL--IPP---RQVQPMDYTP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YMVND---------------------------------------------------------------------------------GLGVIANAHVV-FA---DR-----------EPNMAMSDPCIELAQLFSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMEK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YHSE------------------------------KVIGKLFREVKD--KTT---QAS----SITTFTRDVARRS--YDTDLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKSE------YDKKLGNLMDYYGIK-----------------------------------------------------------------TEAETLSGGIMK---ASKTFDR-------RRD--AEAIGVAVRSLRKEAR----------------------------------------------------------------TWFKR---RS------------------D---IDD--------------------------------LLAKASAWYHVAYHPTYWGCYNE--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------D----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [775]
'gi|53689742|gb|AAU89754.1| RNA-directed RNA polymerase-like [Solanum tuberosum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EHLSVFQIYNLG-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQWVRTTD----------FT----------P-SWIGLSSSLCLQFRRG--------VHLPNFQESFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFVSQKSALVPNVQPP-EGIAIPYKILFKISSLVQHGCIPG-PAL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELL-PK---AST-GN--GI-RTNIYERILSTLRKGFVI-------GDKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRR-------------------------------------------------------G--LTTNDIRSWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSRET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NNK-LDVLGW-----------SKYQPCYLNRQLVTLLSTLGVKDDV---------LEQKQKEAVHQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTRSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQAMEYPP---APSI---------------QLDHNV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIIANAHVV-FA---DR-----------EPDMAMSDPCKKLAELFSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDKPPD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----SIAIFTRDVARRS--YDADLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---ASKTFDR-------RKD--AEAISVAS---------------------------------------------------------------------------------------------------------------------------------------------PTGGIILGITLDG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [886]
'gi|50924896|ref|XP 472792.1| OSJNBb0048E02.13 [Oryza sativa (japonica cultivar-group)] >gi|32492169|emb|CAE04828.1| OSJNBb0048E'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPTAAAAATASLRVSNIPPS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVAAELLA-FFDSAVAVAGGAFACEIAAAH-RGWLSRGH----------------------G-----------------------------TVQFG-SAAAAAAAAGLASS--GRLPRF----------------------------------------LGALLSV------------------------------------SPSPVDLL----PRAS----------------DLSLRAAGAGLVVGDRVAE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVFE--------AAD----AWDGVRAEVIPGKRRVDLYLEHD--------S-------------QRYKLEVL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FEDMKDCLGCTLDG---------------MGAILLQLNYAPRIHTA-----------------ISGPAVNSRF-------------------------MDDRFHACKEDAKFSWVRALD----------FT----------PNYSFGRCSTLVLKLGKS--------ALVSDILKSLPFSGN-L------------------------------------------------------------------------------------GELTMNSMDGVGASS--NVVPLVHCP-RDYSVPYEVLFRLNSLMHMGKIVA-KHV----------------------------------NADLFKALQE-------L---PVDVSRRIFEKMHKL-----ES---------TCYGPLQFIQQEA---------YSMKRSHNVLLSNEGEG-EGE----------RKLMKCYRVNITPSKIFCF----GPEEEVTNYVVKHHS-AYASDFVRVTFVDEDW------------------------------------------SKLSSNAIS----ARIEQ-GFFSKPFKTGLYYRILSILKKGFSI-------GPKNFEFL-AFSA-----------------SQLRGNSVWMFA--SNA-------------------------------------------------------S--LNAGGIRRWMG---HFEN----IR--SVSKCAARMGQ-----LFSSSRQT---------------FEV-LRWDV-EV---IPDIEITTD--------------GSK---YIFSDGIGKISLRFAKRVAHHVG-------------------LD-----------------PT----NLPSAFQIRY----GGYKGVIAIDPM-------------------------SS------------IDLSLR-PSMKKF-----ESE----------------------------SRM-LNITSW-----------SKSQPCYVNREIISLLSTLGIRDEI---------FVAMQQDEMRET--------EEMLTNKEVALSVLGKLGG-S--E---T--------------------KT-AVKMLLQGYEPS--SEPYLSMILKAHQENRL-TDIRTRCKIHVPK--GRVLIGCLDETG--VLEYG---------------------QVYIRITKNSK--------------EQ-------KDSNQSYFYND--DGKTATVVGK-VAITKNPCLHPGDIRVLEAIYD-----------------PD------------L--VG-----MVDCLVFPQRGE----RPHPNECSGGDLDGDLYFITWDDKL--IPE---KVDTPMDYTA---TRPR---------------IMDHVV------------------------TLEEIQKHFVD--YMIND---------------------------------------------------------------------------------SLGAISTAHLI-HA---DR-----------SPLKARSPECLQLATLHSMAVDFAKTGAP---------AEMPRT--------------LRPREY-PDFMER-WE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPM---YISN------------------------------GVLGKLYRSAMG--HME---KSG----DSGALSSSSAQPSPTYDPDLEV---------------------------------------------------------PGS----------DEFLQAAEE-YYEL------YEEKLTTLMNYYRAE-----------------------------------------------------------------LEDEILTGNIRN---KMLYLKRDN----KRYFEMKDRIVAAVDALHREAR----------------------------------------------------------------GWLLS---SR------------------K---EED--------------------------------ASRMASAWYRVTYHPDRRRG--------------------------K-RFW--SFPWIA---C---------------------------------------------DNL-----------------------------------------------------------------------------------------------LAIKASSQLRRRRQKDDDSTAVVQMDCS---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1136]
'gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGVEKRVT-ATVRVSNIPQT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AIAKQLFD-FFESSIG-KGSVFACDIFSEH-KNWKSRGH----------------------G-----------------------------RVQFE-TSQSKLQSLSLSEQ--GKL-VF----------------------------------------KGHQLIL------------------------------------TSSFDDII----ARPI----------------ELNYRFQKGILHTGILLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DYME--------VLE----TWENVKTLIMPERKSLEFWVSHA-------KG-------------ECYRLEVQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGDIIETCECSLED---------EKT-----ALLLKLKHAPKLYQR-----------------VSGPGVASKF-------------------------SSDRYHVCEEDCEFLWVRTTD----------FS----------AMKSIGCSSSPCWEIEDG--------LLSSDLLSGLPYCNNDV------------------------------------------------------------------------------------MDLVLDEVGDIYSAS--ELVPLASFP-SDLKLPYEILFQLNSLIHTHKISL-GAV----------------------------------KTDLIEVLSK-------L---ELDTAMMILQKMHKL-----QS---------TCFEPVPFIKTRL---------HVLGKNSKNQPSSSYSR-LVN----------QNMMSVHRVLVTPSKVYCL----GPELETSNYIVKNFA-LHASDFLRVTFVEEDW------------------------------------------GKLSPNAIS----MSVEQ-GIFAKPYRTKIYHRILSILRDGLVI-------GSKRFLFL-AFSA-----------------SQLRSNSVWMFA--SNE-------------------------------------------------------H--VKAEDIREWMG---CFNK----IR--SVSKCAARMGQ-----LFSTSFQT---------------MEV-QSPHV-EI---LPDIEVTSD--------------GVS---YCFSDGIGKISQAFASQVAQKCG-------------------L-------------------S----YTPSAFQIRY----GGYKGVIAVDRN-------------------------SF------------RKLSLR-GSMLKF-----ESK----------------------------NRM-LNITKW-----------SDAMPCYLNREIVILLSTLGVEDKV---------FEDLLDNHLHLL--------GKMLTTNEAALDVLESIGG-G--D---V--------------------KKILMRMLHQGYAPN--LEPYLSMMLQSHFENQL-SDLRSRCRIFIHK--GRVLVGCLDETG--ILNYG---------------------QVYARITMTKA--------------EL-------QSAQQSFFQKV--DETTAVVRGN-VVVTKNPCLHPGDVRVLEAVYE-----------------VA------------LEEKA-----WVDCIIFPQKGE----RPHPNECSGGDLDGDLYFISWDENL--IPR---QTVTPMDYTG---RRTR---------------IMDHEV------------------------TLQEIQRFFVD--YMISD---------------------------------------------------------------------------------TLGAISTAHLV-HA---DR-----------EPDKALNPKCLQLATLHSMAVDFAKTGAA---------AEMPRF--------------LKPREF-PDFLER-WD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPM---YISE------------------------------GVLGKLYRAIVN--SSV---RSN----SDDLGSVRAIQDA--YDHALLF---------------------------------------------------------DGY----------EAFIETAKN-HKET------YLDRMNSLLNYYGAE-----------------------------------------------------------------KEVEILTGNLRQ---KSVYLQRDN----RRYFELKDRILVSAKSLQKEVK----------------------------------------------------------------GWFTG---CC------------------K---EDE--------------------------------HKKLASAWYHVTYHPSYCEG--------------------------SANCL--GFPWVV---G---------------------------------------------DIL-----------------------------------------------------------------------------------------------LDIKLHNT--RK----------I----T---S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1120]
'gi|15237051|ref|NP 192851.1| RDR2 (RNA-DEPENDENT RNA POLYMERASE 2); RNA-directed RNA polymerase [Arabidopsis thaliana] >gi|7267'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVSETTTNRSTVKISNVPQT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVADELLR-FLELHLG-EDTVFALEIPTTR-DNWKPRDF----------------------A-----------------------------RVQFT-TLEVKSRAQLLSSQ--SKL-LF----------------------------------------KTHNLRL------------------------------------SEAYDDII----PRPV----------------DPRKRLDDIVLTVG-FPES---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DEKRF------CALE----KWDGVRCWILTEKRRVEFWVWES--------G-------------DCYKIEVR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FEDIIETLSCCVNG---------DASE--IDAFLLKLKYGPKVFKR-----------------VT-VHIATKF-------------------------KSDRYRFCKEDFDFMWIRTTD----------FS----------GSKSIGTSTCFCLEVHNG--------STMLDIFSGLPYYREDT------------------------------------------------------------------------------------LSLTYVDGKTFASAA--QIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAAS----------------------------------DMELIKILRG-------M---SLETALVILKKLHQQ-----SS---------ICYDPVFFVKTQM---------QSVVKKMKHSPASAYKR-LTE----------QNIMSCQRAYVTPSKIYLL----GPELETANYVVKNFA-EHVSDFMRVTFVEEDW------------------------------------------SKLPANALS----VNSKE-GYFVKPSRTNIYNRVLSILGEGITV-------GPKRFEFL-AFSA-----------------SQLRGNSVWMFA--SNE-------------------------------------------------------K--VKAEDIREWMG---CFRK----IR--SISKCAARMGQ-----LFSASRQT---------------LIV-RAQDV-EQ---IPDIEVTTD--------------GAD---YCFSDGIGKISLAFAKQVAQKCG-------------------L-------------------S----HVPSAFQIRY----GGYKGVIAVDRS-------------------------SF------------RKLSLR-DSMLKF-----DSN----------------------------NRM-LNVTRW-----------TESMPCFLNREIICLLSTLGIEDAM---------FEAMQAVHLSML--------GNMLEDRDAALNVLQKLSG-E--N---S--------------------KNLLVKMLLQGYAPS--SEPYLSMMLRVHHESQL-SELKSRCRILVPK--GRILIGCMDEMG--ILEYG---------------------QVYVRVTLTKA--------------EL-------KSRDQSYFRKI--DEETSVVIGK-VVVTKNPCLHPGDIRVLDAIYE-----------------VH------------FEEKG-----YLDCIIFPQKGE----RPHPNECSGGDLDGDQFFVSWDEKI--IPS---EMDPPMDYAG---SRPR---------------LMDHDV------------------------TLEEIHKFFVD--YMISD---------------------------------------------------------------------------------TLGVISTAHLV-HA---DR-----------DPEKARSQKCLELANLHSRAVDFAKTGAP---------AEMPYA--------------LKPREF-PDFLER-FE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPT---YISE------------------------------SVFGKLYRA-VK--SSL---AQR----KPEAESEDTV--A--YDVTLEE---------------------------------------------------------AGF----------ESFIETAKA-HRDM------YGEKLTSLMIYYGAA-----------------------------------------------------------------NEEEILTGILKT---KEMYLARDN----RRYGDMKDRITLSVKDLHKEAM----------------------------------------------------------------GWFEK---SC------------------E--DEQQ--------------------------------KKKLASAWYYVTYNPNHRDE--------------------------KLTFL--SFPWIV---G---------------------------------------------DVL-----------------------------------------------------------------------------------------------LDIKAENA--QRQSVEEKTSGLV----S---I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1133]
lcl|Smo_RDR6SDE1SGS2_1_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?SVQI-GL--LPEPSSVYHRVLAVVRDGVTI-------GGKKFKFL-GFSA-----------------SQLREHSLWMFA--GAG-------------------------------------------------------S--VTAESIRAWMG---DFGG----FT--NIAKCAARIGQ-----SFSSSRSS---------------LEV-LEDEL-SS---VEDIYC-----------------GTR---YCFSDGVGKISKAFATSVARACN-------------------M-------------------P----VVLSALQIRY----AGYKGVVAVDPT-------------------------CS------------TKLSLR-PSMLKF-----PSE----------------------------RTG-LDVLKA-----------SQYAPYYLNRQSIILMTTLGVPDEV---------FERMQKEELKIL--------DEMLSDPQTAIEVLRSSSSGG--E---A--------------------HSIMVAMLQAGYKPA--HEPFLRRLLDNFRSLQL-YLLRTKSRIYVPK--GRCLLGCLDETG--VLDYG---------------------QVFVQVSPTPG--------------TRRVVDD--GLDDARPRRGVTRSESACVVLGK-VVVTKNPCLHPGDLLVLEAVDV-----------------PG------------L--HH-----MIDCVVFPQRGK----RPHPNECSGSDLDGDLYFVTWDKSL--VPP---VTHEPMDYEP---GTAA---------------KLDHSV------------------------TLEEIQRFFVD--SMVHD---------------------------------------------------------------------------------SLGVISNAHLV-HA---DK-----------ELERAKDPKCLELARLASTAVDFAKTGIP---------AVIPVD--------------LRPRDY-PDFMEN-EF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KST---YTSQ------------------------------SVLGKLYRSLQS--NGRIFSQRS----SAVAASPKEMDQE--FDRSLTV---------------------------------------------------------DGY----------EQHVSEARS-LKEL------YDTKLERLLRHYEI------------------------------------------------------------------TEAEIVTGNVLC---LGKANEK------TKRNDTRDRIACAMKSLAKEAG----------------------------------------------------------------RWFEA---G----------------------LNEH--------------------------------QLAKACAWYHVTYHPEFRKGS-------------------------NVESL--SFPWVVPAVV---------------------------------------------EKL-----------------------------------------------------------------------------------------------VSLKRAKSWI---------------------E-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [693]
'gi|47824924|gb|AAT38699.1| RNA-directed RNA polymerase [Solanum demissum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFA--SRR-------------------------------------------------------G--LTTNDIRSWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSRET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NNK-LDVLGW-----------SKYQPCYLNRQLVTLLSTLGVKDDV---------LEQKQKEAVHQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTRSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQAMEYPP---APSI---------------QLDHNV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIIANAHVV-FA---DR-----------EPDMAMSDPCKKLAELFSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDKPPD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----SIAIFTRDVARRS--YDADLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---ASKTFDR-------RKD--AEAISVAVRALRKEAR----------------------------------------------------------------TWFKR---RN------------------D---IDD--------------------------------MLPKASAWYHVTYHPTYWGCYNQ--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKEKARN--RPVLNLSSLRAQLSHKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [657]
'gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IRAWMG---DFDH----IR--NVAKYAARLGQ-----SFSSSRET---------------LNV-RSDEI-EV---IPDVEIISL--------------GTR---YVFSDGIGKISAEFARKVARKCG-------------------LT------------------E----FSPSAFQIRY----GGYKGVVAVDPN-------------------------SS------------KKLSLR-KSMSKF-----ESE----------------------------NTK-LDVLAW-----------SKYQPCYMNRQLITLLSTLGVTDSV---------FEKKQREVVDRL--------DAILTHPLEAHEALGLMAP-G--E---N--------------------TNILKALILCGYKPD--AEPFLSMMLQNFRASKL-LELRTKTRIFISG--GRSMMGCLDETR--TLEYG---------------------QVVVQYS------------------------------------DPMRPGRRFIITGP-VVVAKNPCLHSGDVRVLQAVNV-----------------PA------------L--NH-----MVDCVVFPQKGL----RPHPNECSGSDLDGDIYFVCWDQEL--VPP---RTSEPMDYTP---EPTQ---------------ILDHDV------------------------TIEEVEEYFAN--YIVND---------------------------------------------------------------------------------SLGIIANAHTA-FA---DK-----------EPLKAFSDPCIELAKKFSTAVDFPKTGVA---------AVIPQH--------------LYVKEY-PDFMEK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPT---YESK------------------------------NVIGKLFREVKE--RAP---PLI----SIKSFTLDVASKS--YDKDMEV---------------------------------------------------------DGF----------EEYVDEAFY-QKAN------YDFKLGNLMDYYGIK-----------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [513]
'gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG 06459 [Chaetomium globosum CBS 148.51]'                                    MADPMSG------NYQNLLL--------------------KGADNGRLQAQKQARPAT--------------------PASA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRFPNP------------------------R--------------------------------------------------------------------------------------HVERPSFVR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPGPAAGQSKPIPTQQA--AVVPPAWASKKSATMIIKPIPAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASPWDIRE-FFEKFGNVV-------------------------------------------------------------------------WVEL-----DGARVS----HRSAKIRFE-----------------PPPTDVSFFQQGKCKLSIGGSVS---W---ALIKFPRQSDQEPTM------------TTPG--GNACPTSMV-------------------------------FGPDRLTFGLLIQP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTFMA------KKEILKLDGNLELKFTADFRRQKLTVHFPIS-------V--YG-E-------RQYYRIEMK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGIIKSIYRMA---------------S----VLVVHLADPPLARKK----------------------QTGMD-------------------------GAGWVDRLVWGEDELWYRAVDVGTNSQNPPTKPVSLDEDP---GIIDFGRWTTYWVDL-DN--KSAQ--EQWSVIEGHLRDWNIATKTEAIFTRIPST-------------------------------------------------KPELWDLLADPH-FDVSTAASPTWDNGLILLSAM----------------THISLPYEVRYQLEVCISRGILSE-YNI----------------------------------RRDFLEKLFEM-SKPRDL---KPNRARLVLEYAADE-----GK---------PVYNPMELFEDRG---------AMAYYP--TTLHI-------P----------DYCALVRKVTVTPTRIFFS----TPTVETTNRVVRRYK-DVQDHFIRVQFTDELL------------------------------------------DGRIRAS-D--------------VDRDDELYARVCRVMTQGIRM-------GKWHWKFL-AFGN-----------------SQIRENGAFFFCEPEDG-------------------------------------------------------T--TTCHSIREWMG---NFDH----IS--SVAKLAARLGQ-----CFSTTRLL---------------NCI-SAPRI-VK---IPDIES-----------------NDG---FCFTDGVGKISFPLASLVSEAWK-------------------ID-----------------------TRPSAFQFRM----GGCKGVLVTWP--------------------------DA----------KGTEVHVR-PSQEKF-----SAE----------------------------YNG-LEIIRC-----------SQFSCPTLNRQTILILSCLGVPDDV---------FIDMMAGQIASY--------DTAMTNQDRAIELLSKYVDGN--M---T--------------------TTTIATMILNGFMHT--REPFVRTLLQLWRSWSI-KGLKEKARLVVDQ--GAFLLGCVDETG--TLRGH-----SRATEGRNGITQNDLPQIFLQVP------------------DR------------------KDRGAYKVVTGI-CIVGRNPSLHPGDIRVVEAVDV-----------------PE------------L--RH-----LRDVVVFPLKGD----RDVPSMCSGGDLDGDDFFVIWDPKL--IPP-E-WSHPPMNYTA---PEPL---------------NESQES------------------------IVNSLAFFFVL--FMKND---------------------------------------------------------------------------------RLPLIAHAHLA-TA---DY-----------EVTGAKHWKCLQLASLHSIAVDYVKTGIP---------ARWNKK--------------LDPRKY-PHFMEK-AK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKS---YRST------------------------------SVLGKLYDMIDKEVFDN----------------RDNYKLP--FDDRILK----------------------------------------------------------RF----E---LGHPLLKEARK-IKTQ------YDISMRRIMGQLEIR-----------------------------------------------------------------TEFEIWAAFVMS---KPRVGTD---------YKVQEKVGRESAGLKKQFR----------------------------------------------------------------DLCLKVVEEHGFN------------------------------------------------------RQEFVAAMYKVTWEETRIALHEA--RQPHVLPDGTVGLRRVTAR--SMPLI--SFPWLF---P---------------------------------------------DDM-----------------------------------------------------------------------------------------------GKIA--------------LGTERLPNLME-----------------------------------------------LGIVPPSTNPMPKGPNMAQLETEPDLAG--MDYTKTSDGQFIHRGEILH-LFRHNDDGEDGFYYDD-GSDSPDPSGDSAS-DTASKQEQEVKKMADDFATLLDSDASLDAESP--------------------------------------IQENADIMQVLSSPKLSDHAAESALLDLLSSDMDTNLDSTPCLTPVRIYAQQPDTVATTETVQSINRSVEEASVAVATDHKDKD-------GAARNPDAASVVSDSNTSSWNRATPPVSEPPAELPVDYIPVSSHRARRGGQRLNQVEL-----------------------------------------WADGAGSGLGKGIVGAPGYALNEREAAAALPAYVDPFAPAKALAVEEVVGGVPDEE-VEYQEDVIEVEAETTLEK-AARFA---------   [1572]
'gi|86196450|gb|EAQ71088.1| hypothetical protein MGG ch7g495 [Magnaporthe grisea 70-15]'                                    MSGNFLA-------------------------RASRQSVRRVATGSHSKGITLFRPRRYA---------SSSAASSTRQSSSGSIGVSAVVAVALAAGLVGYGAAVSLGAGGTVREDTPIIHDSRLPTPKYASLADMNKAIEEIRRDLGDHDIISTDPDDLHAHGYSEWSTVNPTTLPVAVAYPHNTEQVAVIARICNKQRIPLVPYSGGTSLEGNFSAPFGGVSVDFAFMDKIVRFSKDDMDVTVQPSIGWQDLNAQLLKMDTGLFFPIDPGPSAKIGGMVGTNCSGTNAVRYGTMRDWVVNLTVVLADGSVIKTRRRPRKSSAGYNLNGLFVGSEGTLGLVTEGIPLSSLQSFQEELSVAVVTFPSIRDAAAAAAGVMQAGVPVAAMEIMCEVQMRVVSLSGATAPRKWQETPTLFFKFSGTKAGVKENIGKVQQIAKANKGSNFEFAKDEREQKLLWSARKESLWSMLAATQGGPG---------------------------GLFASILGHIGDGNFHESIMYNRGDPVERAKVEGCVKNMVNRALEMEGTCTGEHGIGWGKKESLLVELGAGTVGVMKAIKAALDPHWIIFFAGIEQKNVRMDPPPAPPPPQRSGGLSPTGRGARPFQRSAISHI--CIPVDRWKDYTSMDLQLFGLPMN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITTWEIWR-AFDAQVDVL-------------------------------------------------------------------------TIDIF-EGRNGS---------MARVRII-----------------PPATDL-----WHGRLQIRRDVQAMVVCRVEI--DPRGFRFHNEI------------YSPL--NNPVPSEKS-------------------------------IRASSLSVGLMTDK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCMLV------MGTIKPLRNPDDLKLEIKFTKRRINLFFTLA-------LLDTR-DPSKDSYRHFRYKVDVQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRNITKLLRVN-IN---------EDSC----FLLIPLECPPQFFRE----------------------IDNKR-------------------------ITHNDESLTWTSVMDWQRQVHFRDEPQVAEDMPLGLNEEH--TQFMDLGRWTTYRIEL-LT--------QQWSAMERYLSDYGISTQETSDFDFASPD-DH----------------------------------------------PTVIWDHLEKP-------PSPESDNYGLEMLFSS----------------TKVQLTWEVRYQLEACISHRMLAE-PNI----------------------------------TLEFLEKLS-------EM---RPTKARIMLEYVVDR-----NV---------KLYNPMQLFKDEG---------ASTYWPDITPEEL-------P----------QYCTMTRKVTVTPSTMYLS----SPMVETTNRVLRHYN-EHKDRFLRVQFTDELP------------------------------------------TGRLHAPND--------------LGADDEIFSRVYRVLKNGIHI-------GDRHYKFL-AFGS-----------------SQMRENSTYFFC--DAG-------------------------------------------------------D--VTCDSIRAWMG---RFSH----IR--NVGKYAARLGQ-----CFSTTRSI---------------DRV-AMPWI-KT---IPDIE------------------KNG---YCFTDGVGKISSLWAVVISENLK-------------------LD-----------------------YIPSAFQFRM----GGCKGVLVVWE--------------------------DV----------KGQEIHIR-PSQLKF-----ETD----------------------------HSR-LEVIRC-----------SHFSVASLNRQTISVLTSLGVKNEV---------FESMLAEQLAKY--------NRAMEDATAAMTLLTQYVDEN--Q---M--------------------TNTLARLVKAGFMES--HEPFVCTMLRLWRTWSV-KTLKEKARLVVEK--GAFVLGCVDETK--TLHGHFTHIPASPNQRPRLNGNMKLPEIFLQVP------------------DG------------------PS-RDYKVITGL-CLVGRNPSLHPGDIRVVQAIDV-----------------PQ------------L--RH-----IRDVVVFAQTGD----RDIPGMCSGGDLDGDDFFVLWDERLLPLPS-Q-RNYKPASYHP---PPAR---------------ELDREV------------------------TADDLCQFFVT--YMKNF---------------------------------------------------------------------------------SLPRIAHAHLA-QA---DK-----------Y--GAKDEKCLELAYLHSLAVDYPKTGVP---------AAIRPR--------------LMPNEF-PHFMEK-AR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GR---YHSR------------------------------KILGKLYDQVKPVNF------------------HPAYEMP--FDVKILS----------------------------------------------------------LYGELSQHGDLGPKLLREARK-LKTL------YDQSIMRIMGQHEIA-----------------------------------------------------------------TEFEVFSAFVLS---SRRVGSQ---------YKLGEIVGQQSATLKTVFR----------------------------------------------------------------EKCIAALETVSGR-------TGIKPRDIE-------------------------------------AFGPFVVAMYKVTDEEIKIALHEC--KTRGV---------KANPK--SMPLI--TFPWIF---D---------------------------------------------QIL-----------------------------------------------------------------------------------------------VQLV--------------TGKSNLPCLTP---------------------------SKLDAGSMTIDLDHLQLPIRLNDLSYQEIRN-------------------IEYARTRDGHVIHRGVVLNSLFRAGEGGENYDYDLDLQPDTEKPEHRDEEL---THQEPQSSLVTLDA-------AESTTYKP--------------------------------------KNENYDLL--------------------------SGIAFTPEILQERIMTSICSASGKQTAASSLATSTTPRVMRLEIESTNEI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GDLIELEQKLPTAKAETAIGRLLEMFSDD   [1952]
'gi|39970563|ref|XP 366672.1| hypothetical protein MG02748.4 [Magnaporthe grisea 70-15]'                                    MSGNFLA-------------------------RASRQSVRRVATGSHSKGITLFRPRRYA---------SSSAASSTRQSSSGSIGVSAVVAVALAAGLVGYGAAVSLGAGGTVREDTPIIHDSRLPTPKYASLADMNKAIEEIRRDLGDHDIISTDPDDLHAHGYSEWSTVNPTTLPVAVAYPHNTEQVAVIARICNKQRIPLVPYSGGTSLEGNFSAPFGGVSVDFAFMDKIVRFSKDDMDVTVQPSIGWQDLNAQLLKMDTGLFFPIDPGPSAKIGGMVGTNCSGTNAVRYGTMRDWVVNLTVVLADGSVIKTRRRPRKSSAGYNLNGLFVGSEGTLGLVTEAT--LKLAVIPEELSVAVVTFPSIRDAAAAAAGVMQAGVPVAAMEIMDEVQMRVVNLSGATAPRKWQETPTLFFKFSGTKAGVKENIGKVQQIAKANKGSNFEFAKDEREQKLLWSARKESLWSMLALRKEGQEVFSTDVAVPFSRLADLIEVSKREMDDLGLFASILGHIGDGNFHESIMYNRGDPVERAKVEGCVKNMVNRALEMEGTCTGEHGIGWGKKESLLVELGAGTVGVMKAIKAALDPHWIIFFAGIEQKNVRMDPPPAPPPPQRSGGLSPTGRGARPFQRSAISHI--CIPVDRWKDYTSMDLQLFGLPMN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITTWEIWR-AFDAQVDVL-------------------------------------------------------------------------TIDIF-EGRNGS---------MARVRII-----------------PPATDL-----WHGRLQIRRDVQAMVVCRVEI--DPRGFRFHNEI------------YSPL--NNPVPSEKS-------------------------------IRASSLSVGLMTDK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCMLV------MGTIKPLRNPDDLKLEIKFTKRRINLFFTLA-------LLDTR-DPSKDSYRHFRYKVDVQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRNITKLLRVN-IN---------EDSC----FLLIPLECPPQFFRE----------------------IDNKR-------------------------ITHNDESLTWTSVMDWQRQVHFRDEPQVAEDMPLGLNEEH--TQFMDLGRWTTYRIEL-LT--------QQWSAMERYLSDYGISTQETSDFDFASPD-DH----------------------------------------------PTVIWDHLEKP-------PSPESDNYGLEMLFSS----------------TKVQLTWEVRYQLEACISHRMLAE-PNI----------------------------------TLEFLEKLS-------EM---RPTKARIMLEYVVDR-----NV---------KLYNPMQLFKDEG---------ASTYWPDITPEEL-------P----------QYCTMTRKVTVTPSTMYLS----SPMVETTNRVLRHYN-EHKDRFLRVQFTDELP------------------------------------------TGRLHAPND--------------LGADDEIFSRVYRVLKNGIHI-------GDRHYKFL-AFGS-----------------SQMRENSTYFFC--DAG-------------------------------------------------------D--VTCDSIRAWMG---RFSH----IR--NVGKYAARLGQ-----CFSTTRSI---------------DRV-AMPWI-KT---IPDIE------------------KNG---YCFTDGVGKISSLWAVVISENLK-------------------LD-----------------------YIPSAFQFRM----GGCKGVLVVWE--------------------------DV----------KGQEIHIR-PSQLKF-----ETD----------------------------HSR-LEVIRC-----------SHFSVASLNRQTISVLTSLGVKNEV---------FESMLAEQLAKY--------NRAMEDATAAMTLLTQYVDEN--Q---M--------------------TNTLARLVKAGFMES--HEPFVCTMLRLWRTWSV-KTLKEKARLVVEK--GAFVLGCVDETK--TLHGHFTHIPASPNQRPRLNGNMKLPEIFLQVP------------------DG------------------PS-RDYKVITGL-CLVGRNPSLHPGDIRVVQAIDV-----------------PQ------------L--RH-----IRDVVVFAQTGD----RDIPGMCSGGDLDGDDFFVLWDERLLPLPS-Q-RNYKPASYHP---PPAR---------------ELDREV------------------------TADDLCQFFVT--YMKNF---------------------------------------------------------------------------------SLPRIAHAHLA-QA---DK-----------Y--GAKDEKCLELAYLHSLAVDYPKTGVP---------AAIRPR--------------LMPNEF-PHFMEK-AR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GR---YHSR------------------------------KILGKLYDQVKPVNF------------------HPAYEMP--FDVKILS----------------------------------------------------------LYGELSQHGDLGPKLLREARK-LKTL------YDQSIMRIMGQHEIA-----------------------------------------------------------------TEFEVFSAFVLS---SRRVGSQ---------YKLGEIVGQQSATLKTVFR----------------------------------------------------------------EKCIAALETVSGR-------TGIKPRDIE-------------------------------------AFGPFVVAMYKVTDEEIKIALHEC--KTRGV---------KANPK--SMPLI--TFPWIF---D---------------------------------------------QIL-----------------------------------------------------------------------------------------------VQLV--------------TGKSNLPCLTP---------------------------SKLDAGSMTIDLDHLQLPIRLNDLSYQEIRN-------------------IEYARTRDGHVIHRGVVLNSLFRAGEGGENYDYDLDLQPDTEKPEHRDEEL---THQEPQSSLVTLDA-------AESTTYKP--------------------------------------KNENYDLL--------------------------SGIAFTPEILQERIMTSICSASGKQTAASSLATSTTPRVMRLEIESTNEI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GDLIELEQKLPTAKAETAIGRLLEMFSDD   [1977]
'gi|46128677|ref|XP 388892.1| hypothetical protein FG08716.1 [Gibberella zeae PH-1] >gi|42549570|gb|EAA72413.1| hypothetical pro'    MNTKHPL-------------------------SELPRGSRGSPNQNHNQTNGNRESPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKTSKAMSHKSNEIA--SQLRPSWLSWPDLTVYLERLPSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTSNLWD-WFSDQGEIA-------------------------------------------------------------------------QMDIN-ESPQNSAYR------SGKIRFE-----------------PPPRN-DFWGA---------------AVYLIPHPDPRRKSELVEI------------SVRL--DKRVPEGFIRSPVCKDRRH----------------PIVTTLYPMALEFGIMLEE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSMKI------LKSMTGTVGERKLKLEINLRQKKLTAFFPME-------I------MTRGGRGVRQHKVVID------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FFAMKNIYQAT-TD---------DDSC----AIVLPLEIPPRYYWR----------------------TPNIR-------------------------STFSDDVKTWYAGDSWNRATDIVEEAGLPMQSPISLNNDYKDSDFIDIGRWTTLRFVL-EA--KTEEVKDLNRQLVSALHDFNINTIIRDDFQAAHGT-------------------------------------------------HAEMWKHLDHH-----ASAKSHNASHALSLWHED----------------SFVYLPFEVRYQLEVCISQGQLNE-HKI----------------------------------TKEFLDKLA-------SM---PSHRAKEYLEFAAERVLKDGHP---------TTIDPMSTFDSQRD--------SGDNYK--SISRI-------P----------QYCGLVRRAVITPTTVRYS----TPNIEVSNRVMRRFR-HIQDRFLRIQFTEEME------------------------------------------KGKITVNKD----------------QNDEIYKRILRTMYEGIRI-------GDRLYEFL-AFGN-----------------SQLRSNGAYFFC--PTE-------------------------------------------------------Y--VSCDDIRQWMG---QFSH----IK--VVAKYAARLGQ-----CFSTTRDV---------------RGI-SSPNC-LQ---IPDVE------------------RNG---YCFTDGVGKISVFLAKLVGEDMA-------------------ID-----------------IC----ADPSAFQFRM----GGCKGVLAVWPE-------------------------DA----------KGTEVHVR-ESQKKF-----ESD----------------------------SKG-LEIIRW-----------ARYATATLNLQTILILECLGVPIKS---------FTTLLDQQLKQY--------ELAMRDNDVAIEMLERFRDEQ--H---N--------------------HSCLADLLRADFKTETFQEPFVVNVINLWQSWSI-KSLKEKARIHVPK--SAFVLGCVDETG--TLRGH-----SFDTEGSKEKDVHRLPQIFLQIS------------------DP------------------KKYNKTSIIRGP-CVVGRNPSLHPGDIRVVEAVDC-----------------KA------------L--HH-----LTDVVVFPSTGD----RPVPNMLSGGDLDGDDFFVIWDPSL--MPS-E-WNHPPMNYSP---LDPI---------------ELKRDV------------------------NVDDLRNFFVK--YLKND---------------------------------------------------------------------------------KLPLIAMSHRA-FA---DE-----------L--GPKSSKCLELAELHSKAVDYPKTGNP---------AVLRQD--------------QQPRKW-PHWME---K--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHS---YHSR------------------------------KALGVIYDKVAHKKVEF----------------NPVWDRP--FDKRITK----------------------------------------------------------RF----E---LDNETLGVARK-IKAE------YDTAVRRILSQNSLK-----------------------------------------------------------------TEFELFTSFPLT---RPAVGSD---------YKFAEDLSCEFRSIKEHYQ----------------------------------------------------------------DVCIK---AAGGK-------------DAE-------------------------------------KLEPFVAAMYTVTEEQIK-----N--EESILQPQG------LEPK--SMPLI--SFPWIF---H---------------------------------------------GVM-----------------------------------------------------------------------------------------------CRIA--------------TEGAVDPRTNI--------------------------------------------------------------------------------------------------------GTHGTTEQSFIRDSTVPQNP----------------------------------SP--------------------------------------AGETQPIH-----------------------------------------------------VRVLEEGIGHGALDLTDSRQDED--------------------------------------------------------------------------------------------------------------------------------------------------------------------SEEDDAID------------RLNDLIDG----   [1295]
'gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae]'                                    MQRATEK------------------------PQLSEREHGRGSRKQRSRKGKKHHKRSSTLGPSSQTSSSTNKGSEDRSSST----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATYQTGVSPHRALTTSTSRQPQNSSRLQQQPA--QLLLAPWTFWDTVAVNLFNLPRE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INTRILWQ-TFSSEGYVS-------------------------------------------------------------------------SIDLF-EDSHGNRDS------RGKIRFK-----------------PPPKT-DFWRKGLYTIKLPNGRTSVINIGLDL------NREEPQI------------ASPVRSGVSYPVEVK-------------------------------LPILSMDIGVLLSE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTMLP------MRSVGSGENES-SRLVLNLKQKALFVYFQLP-------IFTPGYKPTPASGMLQEYRLKIP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FVQLSWIFQVRDTV---------TGDI----SHFIVLDSPPLYHRR----------------------INNID-------------------------VTHSEENNTWRESETWYRQTYIVRNALELPYLPIGLKKAK---AVIDIGRWNTFKITYPRD--ADFKG--KLTLLCDILKDYNVTFQDTDRFTQWDTNVEM----------------------------------------------NPPIWKWIDLS-----DSQPPRK-ACSLEDLFDH----------------NFVHLPFQVRYQLEVCISNGYLSE-FTM----------------------------------TREFAVKLS-------EL---GETQAVKLLEHVSAK-----KQ---------VYYDPMKIFDLKF---------IKGV----TQAKI-------P----------PYCCYMHSARITPSTIYYN----TPTVDISNRVIRRFI-EHADRFLRVRFTDEKL------------------------------------------LGRINSTTD---------------STMDEIFTRIKRALTNGIVI-------GDRRYEFL-AFGN-----------------SQFREHGAYFFA--PLP-------------------------------------------------------N--LTAANIRAWMG---HFNS----IR--NVAKHAARLGQ-----CFSTTRAI---------------AGC-PV-DV-VK---IEDVE------------------RNG---YNFSDGVGRISRFLAQMSMSELK-------------------IK-----------------TP--TGEPPSAFQFRL----GGCKGMLAVSS--------------------------EA----------QRQEVHIR-KSQFKF-----AAI----------------------------HNG-LEIVRW-----------SQFSMATLNRQLIIVLSTLGIPDQV---------FHAKLHTMLQGL--------DQALESDPQAIYWLKKYVDPN--Q---M--------------------TLTISQMVLDGFRRS--KEPFLTSVLTLWRAWHL-KYLKEKARIAVDQ--GACLLGCMDETG--LLQGYFHDK-VPGNDASVEEKTAALPEIFVQVS------------------RP------------------EADKKSEVIEGV-CILARNPSLHPGDIRVVRAVNV-----------------PQ------------L--RH-----LQDVVVLPQTGD----RDIASMCSGGDLDGDDYIVIWDQDL--LPK-D-WFREPMKYTS---NKAQ---------------DLDRDV------------------------TVNDITSFFVT--YMKND---------------------------------------------------------------------------------FLPRIAHAHLA-LA---DF-----------LEDGVNEEKCIRLAQLHSDAVDYNKTGIP---------AILTRN--------------LEPRKW-PHFMEK-FN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPKDRIYHSN------------------------------KILGQLYDAVERIDF------------------VPSLEMP--FDKRLLN---------------------------------------------------------CEI----E---VPDDLLTFAKN-LKGQ------YDDAMRRIMAQHEIK-----------------------------------------------------------------TEFEIWSTFVLG---HANTSKD---------YKFHEEIGAISATLRDTFK----------------------------------------------------------------KQCYE---KVGGR-------------NFD-------------------------------------QLAPLALAMYRVTNEEMSDALNKY--RAEN-STTGNKFFHKPTPKIDQLPLI--SFPWIF---P---------------------------------------------HIL-----------------------------------------------------------------------------------------------GKIALG------------HFE--VPGGIP---------------------------VV-----------------------------------------------DND-----------------------PFGL-FTDDLD-P-TSPLPCRCSIVPAASMPLSFSDNVESLEQL-LDFGLSTSGPHEL--------------------------------------ASSTDAAL---------------------------SDVPIEADLSLLDFSDIPKYSQSPSCNGSIGGGCVIQSMDTTTPAMAVD------------------------------------------------------------------------------------------------------------------------------T-IQRSGSPSGGSTG--GGCVVQSADVSNSTFNEVVSEKWVEIVEEEDDLKPTALDKLN--ELLGF----   [1458]
'gi|71000487|ref|XP 754927.1| RNA-directed RNA polymerase Sad-1 [Aspergillus fumigatus Af293] >gi|66852564|gb|EAL92889.1| RNA-di'    MT--------------------------------------QGSRPRSTL----LRERKRSLQPSRQQVPS-------QAPSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQHVPPVTPQRS-------QWQQIPQVLQHPS--T-ILCPWRLWESVAVHVFNIPRE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADTYCLWQ-AFSKEGHVF-------------------------------------------------------------------------SIDIF-EDFHGNRES------RGKIRFKSADSPLHSINWPNPFSRPPPQK-DFWCHGTYPITLSDGKPTFVSITLDL------KRPDVQI------------QSPLRPNTMYPAEVK-------------------------------LPIASMDIGVPISE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSMLP------MRTVGNERNER-AFLVIDLKRRDLSVHFQLP-------SFKNKPKSASTGETYNQYRLSIP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FVRLVKIYQTRDPK---------SGKV----SHLTFLGSPAIYHQR----------------------IQETW-------------------------VTFN-DDMSWRESDSWYRQTSVVHNPDELSTLPVSLNRSR---PVIDIGRWNAFRITYPEA--LSKKDEERFELFCNILNDYNIAIENTTRFSVLDQTQER----------------------------------------------PPPIWRWIDFA-----DLQGSKKIVSSVEELGDE----------------TYVHLPFPVRYQLEVCLSHNYLSE-FTM----------------------------------SREFAVKLL-------NL---GESEAVKLLEHVAIK-----EE---------VYHDPMKIFDLKF---------AKGS----TRAKI-------P----------SYCCYMRSARITPTTIYYN----TPSVDISNRVIRYYI-EYADRFLRVRFTDEKL------------------------------------------LGRINSTID---------------NTMDEVFTRIKRALANGIVI-------GDRRYEFL-AFGN-----------------SQFREHGAYFFA--PLP-------------------------------------------------------S--LTAANIRAWMG---TFND----IR--NVAKHAARLGQ-----CFSTTRAI---------------AGC-PV-QI-RL---IDDVV------------------RNG---YTFSDGVGRISKFLAQMAASELK-------------------IR-----------------TP--SGDPPSAFQFRL----GGCKGMLTVSP--------------------------EA----------QRQEVHIR-KSQYKF-----ASV----------------------------HNG-LEIIRW-----------SQYSMATLNRQLIIVLSSLGIQDSV---------FHDKLRAMLQSL--------NESMESDSQALCWLKKYVDPN--Q---M--------------------TLVVSQMVLDGFRSS--REPFVTSIMRLWKAWHL-KYLKEKAKIVIEK--GANLLGCMDETG--ILRGY-SEW-IPAKGASDEEKLAALPEIFVQIH------------------HP------------------DT-GKCEVIEGV-CILARNPSLHPGDIRVVRAVNV-----------------PQ------------L--SH-----LKDVVVFPQTGD----RDIPSTCSGGDLDGDDYLVIWDQDL--VPE-D-WFRKPMKYTS---DKAQ---------------DLDQDV------------------------TVNHITSFFVL--YMKND---------------------------------------------------------------------------------FLPRIAHAHLA-WA---DR-----------LEDGVNEEKCIRLAQLHSDAVDYNKTGKP---------ANMARS--------------LQPKVW-PHFMEK-KH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPKEMIYKSN------------------------------KILGQLYDAVERIDF------------------VPSLEMP--FDERILT---------------------------------------------------------CSL----G---VSDDLVQFARD-LKAD------YDAAMHRIMAQHEIT-----------------------------------------------------------------TEFEVWSTFVLS---HSNMSKD---------YKFHEELGLISSSLRDMYR----------------------------------------------------------------KKCYE---KVGGR-------------SFE-------------------------------------LLAPLAVAMYRVTHEEMTSALEKC--RSKN-HSDG-QLFHKPTPKIDQLPFI--SFPWIL---Y---------------------------------------------NIL-----------------------------------------------------------------------------------------------GKIALG------------HYEDSEPGSAP---------------------------TVIAPATASVDP--------LDPVPGQAVSVHKENSNRTEPTSDSLNGIHED-----------------------PFGL-FEGDQE-SRPSSRPSREAEVSATQ---NRRESIPSLDQL-LDFGLVE---LSL--------------------------------------PISSDRLH---------------------------LSAQAPDGFNLLELND-------------------NTALDKPTEGRAEE------------------------------------------------------------------------------------------------------------------------------TDLEKQMSLVSGSTSITGGCI---------------------DIMEEDDVKPSALDMLY--QILDS----   [1440]
'gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa] >gi|85074682|ref|XP 964248.1| hypothetical protein'    ----MSGIPNWVEQAQHAILVSPDRSPKDQDARPRHPSRRRSSQQGHRENTPTPRPPSRP---------------TSRPSSS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPKPPP------------------------R--------------------------------------------------------------------------------------AFRQFS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RGKPASFASLPSLT-QP--VFISREWKCARTAAIRVKDVPPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLQDLHD-LFSEYGHIS-------------------------------------------------------------------------YIEL-----DEDRQDVSDRGRRALIRFE-----------------PPPLSTDFLCRGICRLRIGLVDH---WLPLETVDPKREDRKERTI------------KTQL--GNTCPQTLY-------------------------------VFPSTLSFGLLVQP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVFMK------KQSVQTLSSDSFLRLEFDFKRMRLVIKFSLH-------Y--QR-ELSGFRRQNEHYKLHIK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGVIKELCRTMVGE---------EHRQ----ALVITLRDPPVAYRK----------------------RDVSK-------------------------TFG-EDRLTWSENDLWERVVDI-SPGLDVSKNPVSLAENH---QYIDLGRWLTYWIEL-DQ--QSTR---VWDQVQQYLLDWNLRTKLTVFPEPLPNQ-------------------------------------------------KPKVWDFLDDRYGHDIQQVSSRSWSNDFSLLAAP----------------PRISLPFDVRYQLEVCISQGIINE-HNI----------------------------------DRPFLEKLMEFCDNDNSF---GKDRARLILEYVADEY---AGK---------RIFDPMELFKDHA---------ALAYFP--TSFMI-------P----------NHCAWVRRVTITPTRIYFS----TPCVEPTNRVIRQWK-HAQDYFIRIQFTDEVL------------------------------------------EGRIKSG-E--------------AEL--PLFLRVYRVLEKGVAM-------GPWHWKFL-AFGN-----------------SQIREAGAFMFC--EQS-------------------------------------------------------N--LTGDMMRAWMG---RFSH----IK--VIAKYAARLGQ-----CFSTTRLV---------------PGI-PAPRI-VT---IPDVE------------------KDG---FCFTDGVGKISPLLAKIVAHDWS-------------------ID-----------------------PPPSAYQFRM----GGCKGVLVTWP--------------------------DV----------KGMEVHIR-KSQEKF-----VAE----------------------------FNG-LEVVRC-----------SQFSTATLNRQIIAVLSSLGVPDQV---------FVDMMEQQLSDF--------NAAMEDKQKATAILKTFIDEN--H---M--------------------TPIIAEMLAYGFMGS--QEPFVRTLLQLWRSWSI-KTLKEKARLNVEK--SAFVLGCVDETG--TLKGH-----MKVIEDWKDVSSEKLPQIFLQIP------------------DD------------------VN-GGYRVITGT-CVVGRNPSLHPGDIRVVEAVDV-----------------PA------------L--RH-----LRDVVVFPLTGD----RDVPSMCSGGDLDGDDFFVIWDPLL--IPK-E-RSHPPMISEP---IAGK---------------ELATEP------------------------TVNNLITFFVL--YMKYN---------------------------------------------------------------------------------NLPLIAHAHLA-TA---DA-----------EVEGVKSPKCLELASLHSMAVDYVKTGVA---------AEFPRR--------------LDPKTW-PHFMEK-NR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HT---YHSV------------------------------TALGKLYDMVKRETFDM----------------KENYQLP--FDNRILK----------------------------------------------------------HT----KCRALRDGTLAKARR-IKSQ------YDTAMRRVMCQLEIA-----------------------------------------------------------------TEFEVWTAFVMS---KPRVGSD---------YKLQDNVGRESSALKQHFK----------------------------------------------------------------DQCKK---EAGGD------------------------------------------------------LLSFVSAMYRVTYEEVRIALFEA--KQPHVRPDGRLGTRKITPK--TMPLV--SFPWLF---W---------------------------------------------DKL-----------------------------------------------------------------------------------------------GELA--------------RAGAVLQRRLD-------------------------------DGSEDMDL--------LSDVPLVSQRRRGKHNASGSSDFMDEHGDPLSYTRTSDGKIIHYGQILN-LFSHDD--EDGDERND-ARDRNSSSEDSTHVSNSSKSSSNLSPVAEEDLLTFESPPASPGVTP--------------------------------------ASPQVDLL----GPTLTLTKAELAI--GLAGPVATTYTPPPTDEETVICHGHSNRASHLSASSS---SLDPQPLIEETSGENEDLLLDIYSASPPRADGARLASAVGSDVPVKGGPP-------------PVWMEQVIRMGHRIPTPPLDSIAIPNVIGVPQFESPLTGTVVASAIQDPFVSPSPAVATPATSGSGGGWGGGGGGGGG-------------GYIGIGGPINKELVMGLDGGIKEEDREETDEEAEEVELEIDEDPIAVRYAQMAAL----   [1638]
'gi|18656898|gb|AAL78034.1| putative RNA-dependent RNA polymerase RDP-1 [Diaporthe perjuncta]'                                    MSSHHST------------PTTPDRGPSAQPDASAQIHHTQTSSIPDATAKDNNPRISTLRDPAIADDTSDASNRNTQPSVV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RRLPSPLSMSHTSNGNVLGQKVSLSGPIQGR--------------------------------------------------------------------------------------SIQTNASARTFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------PRGHPNPRQNRFMPNRRQQRSPQSLQQRSTPA--PLTGAVLSAAQSLTIDLFGLPTD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKIREIWESMTSNHLNVN-------------------------------------------------------------------------RVEIY-ENFDGKRTG------KARVIIE-----------------PPPIRWPTWSGPDNLITIDRADSSSLQVSLETR-PFY-----PST------------RTPC--NRPIPAQFCQK----------------------------KLLPTKLVFGMMASE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SAMLN------MPQFSYED----VVLLTKFSKRQFELQFTVN-------L--GR-Y------GCKAFKSQID------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FSHPTKIIWGR-RE---------NGAW----ALAMLLPSPPKLYGR----------------------LPVSH-------------------------D---DEQTLWQEWDLWARQTNISSEMHKLRDLPAKLEKQT--WKSIEFGRWTTYYLDM-ES----SL--SEWESVRTYLADYNVKILQVDHFDLVNPG-------------------------------------------------LSNAWKLLDN------------SAEMTLELLGST----------------QSYHLDFPVRYQLEVCISHGLLSE-YGV----------------------------------NAQFLEKLI-------SF---ETDRARMMLEGVAEA-----NK---------QFFEPMEMFDDPR---------ILHYWP--NA-RI-------P----------PYATLVRRAVITPTTIYFK----TPCVELTNRILRKYS-DLNDRFLRVQFTDEVT------------------------------------------FGKIFSSQD--------------SNKDDNLYTRVHRVMQNGVII-------GDRHYKFL-AFSN-----------------SQFRENGAFFFC--ETD-------------------------------------------------------H--VTCASIRNWMG---DFRH----IR--SVGKFAARMGQ-----CFTTTRQV---------------NGI-SIPKI-RQ---IGDIQR-----------------RSGDNIWNFTDGVGKISVFFARMIASERD-------------------LP-----------------------ETPSCFQMRM----GGCKGVVVVWP--------------------------DI----------PANEVHIR-PSQEKF-----KAV----------------------------YNG-LEIIKT-----------STFAHATLNKQVIPVLIALGVDDAV---------FVRMLDDELKEY--------DEALADSMKAGELLRSQVDEN--Q---T--------------------TLTMAEMV-DTFMDS--EEPFLWTLLRLWKCWVL-KRLKQKFAISVKN--SAMIFGVVDETG--VLRGH-----SQDTEGKGFNNIESLPQIFLQVPIEGS--------------DG------------------KSTTNYEVITGI-CVVGRNPALHPGDVRVVEAVDV-----------------PE------------L--RH-----LKNVVVFPKTGD----RDVPSMCSGGDMDGDDYFVYWDERL--IPS-E-WDHPPLDHDADSSTPGL---------------DSPADV------------------------TNGDVTRFFAQ--YMKND---------------------------------------------------------------------------------SLGRIATAHFA-QA---DQ-----------LAGGVKHPKCIELAKLHSKAVDYIKSGKP---------AVMKRH--------------LQPRNW-PHWMER-DK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KSS---YHSR------------------------------GALGQIYDRIKIEEF------------------HAAYEMS--FDTRILS----------------------------------------------------------RY----Q---LEEDTLAKASE-IKAA------YDIAMRRLTGQHEAP----------------------------------------------------------------VTEFEIWSTFILT---KPRVGSD---------YKLQENVGREMAALKARFR----------------------------------------------------------------AVCME---AVTGDEQTPTCASASSKVNLE-------------------------------------KLDRFVAAMYTVTHNEVRAAVRER--SKP--RPDDEGDLEEI-----QMPLI--SFPWLY---H---------------------------------------------REL-----------------------------------------------------------------------------------------------ARVALG------------RGGDVRPLRKPVC-----------ADPAAANIESEPSGDGALSEEIDQEG--------ETQLSLQKVRSKKDGYVIDRGESVETGKVGEDYVRTSSGQVVRRGQLLT-LFT--DTGEEVQGAQS-TIAPATPP---------AENNSGNPLVEDDG--TGSSYPA----SP--------------------------------------RSE-HEAE-----------------------------------------------------------------------GEDEE-----------------------------------------------IEFEEV-------------------------------------------------------DGAN---------------------------------------------------DGEEEDALEI------------LARKIGM----   [1484]
'gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase [Diaporthe ambigua]'                                    MSPPGRS------------PTLPDRGPLAQSSTSIHPFNTQTASIPHRNGGSSRNPPSNV--PPVAGHMAGSLHSNTR-SNV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QRLAPPSSTPHTPNGNSPRPSTSPWGHHPAR--------------------------------------------------------------------------------------RVQNNGAARTNG-------------------------------------------------------------------------------------------------------------------------------------------------------------------ARCLQSSTQNRSADMRAQQNMHQLQQQRDTTA--ALTGAALSAAQKVILYLYGLPKD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKLQEIWESLTASHLSLT-------------------------------------------------------------------------RVEIY-ESDDGERTG------KARVDIE-----------------PPPTRWPTWDGPHNCLTIVKADSSQVSVRYDAV-PHHLDNIRSRI------------RTPC--HKPIPPKFYQQ----------------------------KFPSKKLVFGMMASE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STMWN------LPQFSYED----VTLLTDFPKGRFEIGFKVN-------V--GR-Y------GLKVFKMQVD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FNHPTKIIWGT-RK---------NGAW----GLAMLLPSPPKLYGR----------------------LPVSH-------------------------D---DDQSLWQEWDLWARQTHISGELHKLKGIPARLEKPA--GQSVDFGRWTTYYFDL-DS----FL--SEWGSVCTYLADYNVKIVQVDRFELVNPD-------------------------------------------------STNAWKLLD-------------STDLTLELLGST----------------DAYHLDFPVRYQLEVCISHGLLDE-YSI----------------------------------GAQFLGRLI-------SF---DTDRARMLLEGVAEA-----NR---------QFFEPMEIFDDPK---------ILHYWP--NA-RT-------P----------PYATLVRRAVITPTAIYFK----SPCVELTNRILRKYS-DLNDRFLRVQFTDEIT------------------------------------------SGKIFSSQD--------------STKDDNLFTRVHRVMRNGIVI-------GDRHYRFL-AFSN-----------------SQFRENGAFFFC--NTD-------------------------------------------------------H--VTCESIREWMG---DFRH----IR--SVGKFAARMGQ-----CFTTTRQV---------------NGI-SIPKI-RQ---IGDIQQ-----------------QTGDHIWNFTDGVGKISPFLATLIANERN-------------------LP-----------------------ETPSCFQIRM----GGCKGVVVTWP--------------------------DV----------PPSEVHVR-PSQEKF-----KAV----------------------------YNG-LEIIKT-----------SAFSHATLNKQVIPVLVALGVDKSV---------FVSMLDSELTEY--------EEALADSMRAGELLRSQVDEN--Q---T--------------------TLTLAEMV-DTFMDS--EEPFLWTLLRLWKCWVL-KRLKQKFAISVKN--SAMVFGVVDEIG--VLRGH-----SQATEGRRDNNIESLPQIFLQVPVEGS--------------DG------------------KSTTNYEVITGL-CVVGRNPSLHPGDVRVVEAVDA-----------------LE------------L--RH-----LKNVVVFPRTGD----RDIPSMCSGGDMDGDDYFVYWDERL--IPL-E-WYHPPLDHDAESSTPGL---------------DKPEDV------------------------TIEDVTRFFAQ--YMKND---------------------------------------------------------------------------------SLGRIATAHFA-QA---DQ-----------LSGGVKNPKCIELAKLHSKAVDYIKSGKP---------AVMQRH--------------LQPRKW-PHWMER-EK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KSS---YPSV------------------------------SALGQIYNRIKIEEF------------------HAAYEMP--FDVRILS----------------------------------------------------------RY----Q---LEDDTLAEAGK-IKEA------YDIAMRRLMGQHEAP----------------------------------------------------------------VTEFEIWSTFILS---KPRVGSD---------YKLQENVGREMAALKERFR----------------------------------------------------------------AECMT---AATGNTQAQEFTFSSSMVNLE-------------------------------------KLDRFVAAMYTVTHNEVRAAARER--SMP--RPDHDGEPEEV-----QMPLI--SFPWLF---H---------------------------------------------REL-----------------------------------------------------------------------------------------------ARVALG------------RGGDVRPLQNS------------GGSLAIDDGEFGVSGDIVSADAVDLEG--------ATHQPLQDVQWNNGGNSTERGDSADDGENGDDFVCTSGGQVVHRGQMLT-LFT--ETGEQVNAQHD-STAQILPT---------ARSVSNHSLVPDDS--TGSSVPA----SP--------------------------------------RSE--QIS-----------------------------------------------------------------------EEDED----------------------------------------------YVDFEEV-------------------------------------------------------GDSG---------------------------------------------------HEE-EDALDV------------LARKIGM----   [1483]
'gi|2330856|emb|CAB11093.1| SPAC6F12.09 [Schizosaccharomyces pombe] >gi|19114207|ref|NP 593295.1| hypothetical protein SPAC6F12.'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAVSLNDFISVKLKRYSRESPWERLRVPYRNKKQKKWASVHNNEAQLHSANKRNDNCLIQRSSTWRLGDMITLVIKDIPVT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WLSNEGGKLYNLWE-PLHDYGTIE-------------------------------------------------------------------------FMKIN-EPLNGQTST------TAIVQFA------------------PPPKVPFWEPNGKINVKGVDLAVQIDITAHRSHISRQVFSKNSF-----------------------------------RS----------------DQLVKIPLSSFKLGQVYDE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RIVPL----------------FGVDCGITVTESNLLVYFNFK-------KLCVL-FDASFDKQIETFRLDFD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FHSIIGDVGTDYYD---------DHI-----SLVFRFRFSPLIFRK------------------------SKN-------------------------ATESRVQTFWTASHLWRRHYDILPFNVSPTTASPIELLNC---HNAPIGRCNVLVLSFSIR---DESDKDDIAFLLHNLEKFNLKSQLDKVVFHLVPDYKH----------------------------------------------RCSLI---------------------------------------------NDKEIEEEIAYLLQACLSKNLLSE-IDL-----------------------------------PIILANLKKL----------SKERAKKFLRLILTS-----KT---------ALINPSELDFTKSF--------VFYDLS--------------S----------ASSIHIKKLYVTPTTLRIV----EDSLEAGNRVIRNFK-DFANRFMRVQITDEYY------------------------------------------KQKIRGGSD--------------GFRNEKLYSRIQQLLTYGIKV-------GNQIYEFL-AFGN-----------------SQLREHGAYFFA--SGS-------------------------------------------------------D--LNAKQIREWMG---DFSE----IN--SVSKYAARMGQ-----CFSTTKEI-------------------NRFCV-DISL-QDDIV------------------RNN---HCFTDGVGMASLSVIRRLSLEVK-------------------NH-----------------D-----MFPSAFQFRM----GGYKGVLSLAPP-------------------------TKLEY------HQGNLVFPR-RSQDKF-----KSF----------------------------HST-LEVIKI-----------SRFSNAHLNMQLITLLEGLGVEKTV---------FLELTRSQLSKM--------NESINSKQKSILMLRDNVDEY--H---S--------------------TLIIADFIQAGFLER--DDAFTENLLNLYYEWVL-RLIKEKQKVSVPK--GAYLLGVADETG--TLKGH------------YDDAVLSVPEIFIQITDTST--------------SF--------------GSYSTGKLKTRVIVGL-CIVARNPSLHPGDVRVCKAVRC-----------------DE------------L--MH-----LKNVIVFPTTGD----RSIPAMCSGGDLDGDEYTVIWDQRL--LPK-I-VNYPPLLESS---PKKS---ID----------FLEGKP------------------------LIDSVKEFFVN--YIKYD---------------------------------------------------------------------------------SLGLISNAWKA-WAHDHDN-----------NPEGIFGNVCLELAEMHSKAVDFAKSGVA---------CKMQAK--------------YHPKRY-PDFMQK-TK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRS---FRSE------------------------------TAVGKIFRYAARFQRES----------GRPATYNPIMNTV--YDPCMKL---------------------------------------------------------PRF---------KTEYLNVAEE-VKKH------YDNDLRSIMARFDIS-----------------------------------------------------------------TEYEVYTAFILF---KDDLAKT------VNEYGLREEVSFQFDLLKKKYT----------------------------------------------------------------QEYLE---KCALS---------------NQSAFDSS--------------------------EYEERINSAVAATYDVTYDQRVKSVGNG--T--------------------TEVLI--SFPYLF---S---------------------------------------------SRL-----------------------------------------------------------------------------------------------CQLSRKAMLTANNF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1215]
'gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila SB210]'                             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSESLQQQLDKEININQTLNFFQTQLLFILLINKCYINGKITSKNFTTSLCFASIQKYLQEQQHRFKSIKCVSIYTPKKEQQQIGLDTIDDVKEKIKEIQKSIDHNYLNIPQH---------------------------------------------------------------------------------------------------------------------------------------------------------------------LKEERYREGQQSLDNDDDSNLLGSEYQFLKNFITKENDDIHLKEEMASFNKIESFCQN----------------------------------------------------------------VLKNS-KNESKINTVNQQKDQYARINSWIIILSGTEQDLEVLNDSKIDVKTKHEKYYFFLKTKHNDNEKKNYLKI----------------------------------------CTDELSNYAKEQ----------------MNFVNIKLLQVSLGIFELY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGALYYNCQFQFEENIDYVNTISIYMQNDESEQSVSIVLAYN-------D--------------YQLKIEFP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YLYCNEIRFDQRGK---------N-------MYYFQLVVPPKYFVR--------------------------E-------------------------NSANIQENLDQKKNTWIRVDNFFAHDISNEL------------KRIEFVNNTVICIEIENE---------TVNTFQTIL-------------------KNS----------------------------------------------FSNVFKDTDPIPISNVSQHFPQEPENDLDQQWER----------------LLNRYSFNLSYSILTLISHNKLSV-VKL-----------------------------------REFLDYIDLQI---------RDGKSEYILEKGIQY---YYNQKKEINRLNFTAFQILFQDVQRQ----------------ENYFKIQEIRAKRD----------VKVIATRRVSITPSGLIYN----LKELELSNRVLRIFQ-DSTDSFIRGTFQDDSL------------------------------------------ENA----------------------KHMKYVSRYFRQKLKSFKV-------LNWEFINF-GWSA-----------------SQLRNSSSWFFH--ETE---------------------------------------------------------VLKKQDVITRIG---DFSG----IN--PPAKKSARIGQ-----CFSSSTPY---------------ILK-ERPNI-EF---IDDITTPSAVQEVDANGNICYFRQKK---KVFTDGIGTISQDLIRKISDHLN-------------------A------------------------FFMCAIQVRY----GGAKGVLTIDYK-------------------------SD----------KKNTIQLR-ESMIKY-KITDEQD----------------------------ELI-IDILDR-----------NKYRFGYLNRQVIILLRSLGIENEQ---------FIQAQQEYIEEL--------NKSALKDASIFTLFNTDYSKDGTRLFPI--------------------THLLRSMQTSRIDMA--QDIFCKGVIHTLKKRGF-YILRKKSNIFLKK--SARLMGVIDEYN--VLEQD---------------------EVFAYISQDSE--------------KS-----------------------FFQVEGD-VIVVKNPCLHPGDIRKLKAVTL-----------------ETISQRLGEGKINPF--KK-----LRNILIFPQKGK----EPITSQIAGSDLDGDCYFICWDQRF--IPL---EQKEPFNYDEDDNSQKK---------------QISQEQYDIEISKKPNTQFKTKNPVREVIDDNEQMLDFFID--FINNE---------------------------------------------------------------------------------NLGKIDNSHLV-FA---DK-----------SPLYAEDPKCLKLASLHAQAVDYAKTGIS---------PQLPKN--------------LAIKEY-PDFMEK-DD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPS---YQSQ------------------------------SILGILYRQVKDQYE-----KHC----KNDIEGDRSQTF---IDNNLIFNP------------------------------PTFV---------------------NEIVDEQENKTYLEQEIDFAIE-ANNQ------WNIEINNLKQFFGAQ-----------------------------------------------------------------NEFEIYTGNFSK---LIKVERKKK----MSAEIVQQRILSTLLAIKNRFE----------------------------------------------------------------LLFFK--------------NLDEDRDRFYDETNRKK--------------------------YYSKKCKIRATLWYIICYLRKPEHIVQY--AVNFE----------------KDSLLGQTFTFLSQQKYFGE------------TIIRGNRNPKTIQFFNENNDYVGLSWFIISNVL-----------------------------------------------------------------------------------------------LEIKKDNDNYKMNEQKQQKSEQQIKEFEDYKKKFYQNDLNGYHSDEYL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1439]
'gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa] >gi|85110327|ref|XP 963405.1| hypothetic'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVYIRNLPQG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSERSLTAHLKPFMDNLGI--RHYDCNKRSNQPFG---------------------------------------------------KVIFI-TAREALNFIAKH-------------------------------------------------PRLYIMNQQAECRVSKPQPKDLK-----NLVNGILYEAEEKERRKKAWEENTSNNARPAR----------------TPTLALDADVLDCGHWSYI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DGNLTFITEWSSSLRVSAKFAKHDLVITSLA------------------------ESQVSIP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YRYIHELVWSNGG------------------HVAVTLAHAPTFLSP--------------------------------------------------------------------------PIPLLRPGQPKRMRLEACDSNHAKVSKFCLVYHFKVSDKHLKQNQGSYRGSDFRTAINGLNEQEMFWVTHYTFAIQTTS-----------------------------------------------------PQDAYAVAVDRLRAALLEYE-----------------------GRDTLPYSLLFNLQALVYMSYLHPTTVL------------------------------------KLAKRLADMFETARRSGQRQDPISVDAFKDLFKT--IDWPSPSLSSAEELAQFEVEGIIEHLKK--------TEKRMREGYTLRLNEEIP-------------PGLTKIYRALVTPTRIELH----GPELEAKNRILRKFP-EHQDHFLRVQFAEEDG------------------------------------------QDLFFNSAV----------------SMDAIYQRFKDVLTNGISV-------GGRVYRFL-GFSH-----------------SSLRAHSLWLAA--PFIYD-----------------------------------------------------GKLQLASNIIEDLG---DFRN----IM--SPARRAARIGQ-----AFSETPYS---------------VSL-YDHGI-DVIR-QRDVK------------------RNE---RVFSDGVGIISQGALEVIHREIP-------------------ESK----------------------GYPNCLQVRW----AGAKGMLALDA--------------------------RL----------TGRQICIR-DSMEKF-----RSR----------------------------DEEHLEICDM----------ASKPIPLMLNRQMIKILEDMRAPAQW---------FLELQEKELQRL--------RAITDNVQNVATFLKLQCVGDSVH---L--------------------SQFLKDLDKMNIDYR--RDQFLRGIVEAVVLREL-RLLKHKARIPVPY--GVTLFGVMDETG--LLREG---------------------EVYVTFETVDG------------------------------------RFKDPPTAGP-VVVTRSPALHPGDIQIAHNAIP-----------------PA---------GHPL--RE-----LKNCIVFSQNGE----RDLPSQLSGGDLDGDTFNVIWDQSI--VATL--RTFAAADYPR---VEPL---------------KLNREV------------------------ESKDMADFFVE--FMKAD---------------------------------------------------------------------------------HLGVIAVRHMI-LA---DE-----------RNEGTLDADCLKLAALHSKAVDFSKSGIH---------VDITEL--------------PRPPMYRPDFLVNGPDIKIHDKSTIDMEEQYLR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QDDDDGDDTPRYKY---YKSD------------------------------KILGRLFRAVDEKKI---------------------------WTKNIKLEV------------------------------PSGGVPFWKEVESSLLKRVRGIGQ-VQW----------QHRLDEARR-ICES------YEDGIKDAMVEFADSPTQ------------------------------------------------------------PLKELEVVMGFILN---KKGIQSRRQRD---KSSKLSDAFARITKMVTNVLR----------------------------------------------------------------------------------------------------------------------PSTPPEEATSELHALELCLACFYVAGEKKSQPQESW-------------------KRQIATGLE--SFRLVAGS-----------------------------------------------ALL-----------------------------------------------------------------------------------------------LEIKAQEQKIRLRHAARSGGFVGVRGGSRVAGRGGRGGHRQPARVDVNTAAEAATLQTADTGAAFGLGSPSSTSAPTTPSSGSNYTPSSGSDMRDGIFNSPTGPYAGYQPELVHAQAGARTAGTSGGQVPSAAPANMPVRLAPADKVAHLAALYAQMQIYQRH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1351]
'gi|66802840|ref|XP 635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum] >gi|60463423|gb|EAL61608.1| RNA-directed RN'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEADSKSKEIEQHDQWLYCSNCLNGVLEFKHLGFYIDMEGVYLEVLRDSSSIFNNNHFYDHNYRDGADIIDQLPNIDRYHLVSKSLQQQQQYSTTVNDNSYYMFDSRKHDLSVQRPYLMCSYKECYNIIGFYHMNPFKKVFSFRLDHAKTILDFKYEDKPWKFFLNNPIFEKIQVYKNQDIDYYGFNSINKKYYNNNDNNNNF---------------NNNNNNNNNNNNNNNNNNNSLNSLFKNNDNDNSNKFQPRMETKDVHYKPTMLPQEKPMIPKFKEGVEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIALFLVDRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSKEYDVLVSTVGSLVNLLEVRHLNILDFYFITFDEVHHATGEHDFNKVVDYIRKTDLNFRPRILGLTASLVSIGNSTIDIVQRSIKDMEER------------MLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETSICEFLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALE-RLDKYSKQLESIYIEYTKVLIKLYELLSVLSTEGPKQVLT------------GLDLLMQSTNQENELYNKLLELRYYISGQYEDRESNFEKGSTRYRKLISSLEYAISDASDGELQKDLRI----------------LVFVETRSGASNLTSMLKKEPFQEYLHTKRLVGHNGDDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARSKNESKFIIIYNDDKDLKILNILSSENLLNNSINQILSNRERQAITKNQFLNWKKLNINNEYFINNQLDGGPLDKDIKCVILSIYHIEIDIETFRELLLFQLPDIVNQVDQVSIRMEGDDEYLSSSIIVILNTCIDKEQSIYRLKSLLNINGLKYWMIDRSSFHFEDDNIDNDNNNSYDRENEQDNFNYFINEYTHDLSQFKNKNYSIGSFEYGNMSSPTKYHGIGQLDDSFDLFYGNREMFFTKKTR-------F--------------QRYRLNLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTDIESTFLLVNDKYQNI-------------VHILLIVKRPLIFEE--------------------------------------------------------------------------------EKETTHRVFWNKSKPKKDDFGQAFVYRLTLSTI----------DNEIKEVIKPLIANGFRMYESSLELNCFIQGGINKNNNCMIIDLNL--------------------------------------------------------------------------------QYIKRNLEIHYLLQCLQSQSSYGRVLNQ------------------------------------DFIVEINNLLAFG------KQEEAEFIITSLISK--------------RTKFINYKEFIGDCLKNFLPDPYYAKKKDLSTKS---------------------GEFTMIRDVFITPSRTIFI----QPTLQRSCRAVRKFG---SSNFIMVKIVNESL-----------------------------------------------------------EPLQGVNNKHPLHENRIKPILEGGILV-------GGKIYSYA-GNSN-----------------SQLREYSSWFVS-------------------------------------------------------------NQIGTHTVKIWSG----IEH----VD--NVRKFFRCIGL-----MFSTTIPT---------------VTL-PQNRI-YR---IQDIT------------------RNT---HVFTEGCGEIGPELAKHLNENYN------------------------------------------FRPSTCAYQVRI----GGNKGMLVVNNQ-------------------------AP----------DPSGIYIR-PSMVKF-----NPI--VC---------------------GDEHRT-LEICSV-----------STTSRCKLNRQVISLLSTLGTQDNV---------FFALQDHYLNQV--------AQIVNDTNASKQAIVEFFPDITEGELY--------------------------------------QDPYIRRILISLYKLKM-ERIQQKCHIEIKD--SRMLLGVCDPTN--SLPPN---------------------TVFVQLEEEDE-------------------------------DDDDGRKYEKVIEGL-VMVIKNPCTHPGDVRYLKAVDN-----------------LR------------L--RH-----LRNVLVFSTKGD----VPNFKEISGSDLDGDRYFFCYDKSL--IGN---RSKSETAYLGDETVSNN---------------DKKANVFN----------------------DPFALSSMYST--NVERQ---------------------------------------------------------------------------------ELGKMYNSHLA-IS---DL-------------FGANHEFSIQISKECFKEIDYPKTGIH---------GTIPKE----------ANVWLKTKGY-PHYMQRENSTRVY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQSK------------------------------TIMGKMYDQIDQLVYIGDFLPNIS------------------LDKSNLV---------------------------------------------------------DDY----------EIYLNSAKI-LYSQ------YKLQVHSLLRHYSAE-----------------------------------------------------------------SEESIMIGFLDQGFISDKVSKD-------IKGEMKNDYIKIQQTFENEFL----------------------------------------------------------------KEFGE-------------------------------------------------QHKENCLLIHRVNIEKKVSAWYHVAYSDLK-----------------------------DDRAL--GFYWIARSFKQMTLDQESQKKKNILVNSILDHMNKKKDTLFPLYESRLMIVKELTLFL-----------------------------------------------------------------------------------------------NMLNDTVFKESTLEIIGSTATMLFDENSNLNLYLKLESQNDHMNLAEKNEILNQLKDEIKTSSFI---------------------------SAEACSIIKIQGDIPLFKFKIDKIQCLIGLETSKWHETLVQQQYITKNPSILSILFSIIDWSINSLFVDSETGEIINNSKVYSSLNLQKVIVENSMIPSIFNNKNHNNNN------------------------NNNNNNKHSVKNLTKSNLFSLLIDFCIINKYIDKCNPNELTNTTSNLTIGNWVKLIEIASRYFSVDNNNNNNNKGHKRNKNKNLD--------EYNTNNLGDTILSFFRFYSDSFGRSIYGNEPFIIKLFSKDANDIENQILNPSTESHKTALLFYQESFRHALHSLSTFVSVEEFLSNCLKTTKKIMPIKKNQIKLLQQRSVNEEIVKNVQLCGCSIKIDTNVKNPYILIDGKPQQIRLAQNAIRDLLSIKTENYNLA-TKRNNKRKNFTLGDFAK---K   [2403]
'gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLTIEIVQRSIKDMEER------------MLSRVFKPHSLLTNSTQSELQPELVSFKTSGQESLIETSICEFLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALE-RLDKYSKQLESIYIEYTKVLIKLYELLSVLSTEGPKQVLT------------GLDLLMQSTNQENELYNKLLELRYYISGQYEDRESNFEKGSTRYRKLISSLEYAISDASDGELQKDLRI----------------LVFVETRSGASNLTSMLKKEPFQEYLHTKRLVGHNGDDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARSKNESKFIIIYNDDKDLKILNILSSENLLNNSINQILSNRERQAITKNQFLNWKKLNINNEYFINNQLDGGPLDKDIKCVILSIYHIEIDIETFRELLLFQLPDIVNQVDQVSIRMEGDDEYLSSSIIVILNTCIDKEQSIYRLKSLLNINGLKYWMIDRSSFHFEDDNIDNDNNNSYDRENEQDNFNYFINEYTHDLSQFKNKNYSIGSFEYGNMSSPTKYHGIGQLDDSFDLFYGNREMFFTKKTR-------F--------------QRYRLNLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTDIESTFLLVNDKYQNI-------------VHILLIVKRPLIFEE--------------------------------------------------------------------------------EKETTHRVFWNKSKPKKDDFGQAFVYRLTLSTI----------DNEIKEVIKPLIANGFRMYESSLELNCFIQGGINKNNNCMIIDLNL--------------------------------------------------------------------------------QYIKRNLEIHYLLQCLQSQSSYGRVLNQ------------------------------------DFIVEINNLLAFG------KQEEAEFIITSLISK--------------RTKFINYKEFIGDCLKNFLPDPYYAKKKDLSTKS---------------------GEFTMIRDVFITPSRTIFI----QPTLQRSCRAVRKFG---SSNFIMVKIVNESL-----------------------------------------------------------EPLQGVNNKHPLHENRIKPILEGGILV-------GGKIYSYA-GNSN-----------------SQLREYSSWFVS-------------------------------------------------------------NQIGTHTVKIWSG----IEH----VD--NVRKFFRCIGL-----MFSTTIPT---------------VTL-PQNRI-YR---IQDIT------------------RNT---HVFTEGCGEIGPELAKHLNENYN------------------------------------------FRPSTCAYQVRI----GGNKGMLVVNNQ-------------------------AP----------DPSGIYIR-PSMVKF-----NPI--VC---------------------GDEHRT-LEICSV-----------STTSRCKLNRQVISLLSTLGTQDNV---------FFALQDHYLNQV--------AQIVNDTNASKQAIVEFFPDITEGELY--------------------------------------QDPYIRRILISLYKLKM-ERIQQKCHIEIKD--SRMLLGVCDPTN--SLPPN---------------------TVFVQLEEEDE-------------------------------DDDDGRKYEKVIEGL-VMVIKNPCTHPGDVRYLKAVDN-----------------LR------------L--RH-----LRNVLVFSTKGD----VPNFKEISGSDLDGDRYFFCYDKSL--IGN---RSKSETAYLGDETVSNN---------------DKKANVFN----------------------DPFALSSMYST--NVERQ---------------------------------------------------------------------------------ELGKMYNSHLA-IS---DL-------------FGANHEFSIQISKECFKEIDYPKTGIH---------GTIPKE----------ANVWLKTKGY-PHYMQRENSTRVY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQSK------------------------------TIMGKMYDQIDQLVYIGDFLPNIS------------------LDKSNLV---------------------------------------------------------DDY----------EIYLNSAKI-LYSQ------YKLQVHSLLRHYSAE-----------------------------------------------------------------SEESIMIGFLDQGFISDKVSKD-------IKGEMKNDYIKIQQTFENEFL----------------------------------------------------------------KEFGE-------------------------------------------------QHKENCLLIHRVNIEKKVSAWYHVAYSDLK-----------------------------DDRAL--GFYWIARSFKQMTLDQESQKKKNILVNSILDHMNKKKDTLFPLYESRLMIVKELTLFL-----------------------------------------------------------------------------------------------NMLNDTVFKESTLEIIGSTATMLFDENSNLNLYLKLESQNDHMNLAEKNEILNQLKDEIKTSSFI---------------------------SAEACSIIKIQGDIPLFKFKIDKIQCLIGLETSKWHETLVQQQYITKNPSILSILFSIIDWSINSLFVDSETGEIINNSKVYSSLNLQKVIVENSMIPSIFNNKNHNNNN------------------------NNNNNNKHSVKNLTKSNLFSLLIDFCIINKYIDKCNPNELTNTTSNLTIGNWVKLIEIASRYFSVDNNNNNNNKGHKRKKNKNLD--------EYNTNNLGDTILSFFRFYSDSFGRSIYGNEPFIIKLFSKDANDIENQILNPSTESHKTALLFYQESFRHAFHSLSTFVSVEEFLSNCLKTTKKIMPIKKNQINLLQERSVNEEIVKNVQLCGCSIKIDTNVKNPYILIDGKPQQIRLAQNAIRDLLSIKTENYNLAITKRNNKRKNFTLGDFAKNKIK   [1964]
'gi|14530419|emb|CAC42290.1| Hypothetical protein F26A3.8 [Caenorhabditis elegans] >gi|17508703|ref|NP 492131.1| RNA-dependent R'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRKYEIEIKSRQETQIVEEQDCDCFFEINFEVESEQFDHTIIDAMHDYLSDLN--VYVPYQRPNIVLHGSDFWLRTLDCHT-EIPLAAIYFGNIQGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYFNHWQVSFSRE--------------NISSRDMLHKIHAEFEFDKTDMITVQFQC-----FEEKKQKFEDSRKQKVRVNYQLTIR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDSIRRIIVDPRVE-------------GCNTCVHFEVNCPPLIRKG-------------------------------------------------------------YIDNDKSSFHKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKE--------ISTKEMYRVLSRLRSRTKVLIEFANLPSIDVP----------------------------------------------MGSHYPYNRWNLKK----SPTDSNAPIFREFLKEIFPPKYEIV-DDKLIDVNEERKFSITYLIECLLSRGAIVKDQLL-----------------------------LNEQHWKNFLEIIIWYYRN-------DNQLCEAALEDLVHL-----IDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESI----------------------------EGYQRVRKVIFTPTRVIYI----APETIMGNRVLRKFD-KDGTRVLRVTFRDDNN------------------------------------------KKMRSNVTG------------------KLLDRTANKYLEHGVRI-------ANREYGFL-GCSN-----------------SQMRDNGAYFMMRFTDKQLDRFYKCNPTASNI----------------------------------------NFKPKIDEVRFQLG---RFSE----IE--NVPKLMARLGQ-----CFTQSRLT--------------GVGL-GRDDY-CS---TYDLTGGRATN------------GSE---YTFSDGVGMMSYQFAQEVSQAMQ-------------------FGK----------------------AVPSCFQIRF----RGNKGVIAIEPFLDEIRKWAL----------------VNGVTSM-----KMAKCLFR-PSQIKF-----QAK-------------------------AISGDQ-IEMVKF-----------SSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILSF--------AKQMNEETFCRNKLKEFPRR----------------------------IDIDNLRTMWGFTLS--SEPFFRSLIKASIKFSI-TKQLCKEQIQIPSELGRSMLGVVDETG--RLQYG---------------------QIFVQYTKNYK-----------------------KKLPPRDS--NNKVHGSEIVTGT-VLLTKNPCIVPGDVRIFEAVDI-----------------PE------------L--HH-----MCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSVIWDQEL--LLE---RNEEPFDFAV---EKIKV--------------PYDREK------------------------LDVLMREFYVT--YLKLD---------------------------------------------------------------------------------SVGQISNSHLH-NS---DQ-------------YGLNSRVCMDLAKKNCQAVDFTKSGQP---------PDPLETKWRADPVTFEVIPPENPERI-PDFHMGNER--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPM---YVSP------------------------------RLCGKLFREFQAIDNVI----------KISEERDEQYNIE--LDETIFV---------------------------------------------------------TGF----------ERYMESAQK-QLSS------YNGQLRSIMENYGIR-----------------------------------------------------------------SEGEIMSGCIVE---MRNRISDKDQDD-MSFYNTNQMIETKMTSLVCKFR----------------------------------------------------------------ETFFE---EFGGFTVKCTL-LPNAYDNGNCLNYRCE--------------------------DPDQEVRKKAVAWYRACYECAQSTR--------------------------EVRKL--SFAWIAY------------------------------------------------DVI-----------------------------------------------------------------------------------------------AKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDHLIT-GEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFATRQLASADGNAEPFFKIIEKEEYEKQKRDSSRGNIDPLTEKKRSDM--------MVKFFQFMGCRKFRKMSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEELPVSSDPTITAETMDRECEPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDKAKPKTTVRYIVSVSGTLESIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGEF------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1601]
'gi|66804721|ref|XP 636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum] >gi|60464394|gb|EAL62541.1| RNA-directed RN'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVDSKSKEIEQYDQWLYCSNCLNGVLEYKHLGFYIDMEGVYLEVLRDSSSIFNNNHFYDHNYRDGADIIDQLPNIDRYHLVSKSL--QQQYSTTVNDNSYYMFDSRKHDLLVQKPYLMCSYKECYNIIGFYHMNPFKKVFSFRLDHAKTILDFGYEDKPWKFFLNNPIFEKIQVYKNQDIDYYGFNSINKKYNNNNDNNNNFNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNSLNSLFKNN--DNSNKFQPRMETKDVHYKPTKLPQEKPMIPKFKEGVEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIALFLVDRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSKEYDVLVSTVGSLVNLLEVRHLNILDFYFITFDEVHHATGEHDFNKVVDYIRKTDLNYRPRILGLTASLVSIGNSTIDIVQRSIKDMEER------------MLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETSICEFLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALE-RLDKYSKQLESIYIEYTKVLIELYALLSVLSTEGPKQVLT------------RLDLLMQSTNQENELYNKLLELRYYISGQYEDRESNFEKGSTRYRKLISSLEYAISDASDGELQKDLRI----------------LVFVETRFGASNLTSMLKKEPFQEYLHTKRLVGHNGVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARSKNESKFIIIYNDDKDLKILDILSSENLLNNSINQILSNRERQAITKNQFLNWKKLNINNEYFTNNQLDGGPLDKDIKCVILSIYHIEIDIETFRELLLFQLPDIINQVDQVSIRMEGDDEYLSSYIIVILNTCIDKEQSIYRLKSLLNINGLKYWMIDRSSFHFEDDNIN-------------------------DLSQSKNKNYSIRSFEYGNMSSPTKYHGIGQLDDSFELFYGKREMFFTKKTR-------F--------------QRYRLNLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTDIESTFLLVNDKYQNI-------------VHILLIVKRPLIFEE--------------------------------------------------------------------------------EKK-THIVFWNKSKPKKDDFGQAFVYRLTLSTI----------DNEIKEVIKPLIANGFRMYESSLELNCFIQGGINKNNNCMIIDLNL--------------------------------------------------------------------------------QYIKRNLEIHYLLQCLQSQSSYGRVLNQ------------------------------------DFIVEINNLLAFG------KQEEAEFIITSLISK--------------RTKFINYKEFIGDCLKNFLPDPYYAKKKDLSTKS---------------------GEFTMIRDVFITPSRTIFI----QPTLQRSCRAVRKFG---SSNFIVVKIVNESL-----------------------------------------------------------EPLQGVNNKHPLHENRIKPILEGGILV-------GGEIYSYA-GNSN-----------------SQLREYSSWFVS-------------------------------------------------------------NQIGTHTVKIWSG----IEH----VD--NVRKFFRCIGL-----MFSTTIPT---------------VTL-PQNRI-YR---IQDIT------------------RNT---HEFTEGCGEIGPELAKHLNENYN------------------------------------------FRPSTCAYQVRI----GGNKGVLVVNNQ-------------------------AP----------DPSGIYIR-PSMVKF-----NPI--DC---------------------GDEHRT-LEICSV-----------STTSRCKLNRQVISLLSTLGTQDNV---------FFALQDHYLNQV--------AQIVNDTNASKQAIVEFFPDITEGELY--------------------------------------QDPYIRRILISLYKLKM-ERIQQKCHIEIKD--SRMLLGVCDPTN--SLPPN---------------------TVFVQLEEEDE------------------------------DDDDDGRKYEKVIEGL-VMVIKNPCTHPGDVRYLKAVDN-----------------IR------------L--RH-----LRNVLVFSTKGD----VPNFKEISGSDLDGDRYFFCYDKSL--IGN---RSESETAYLVVETVSNN---------------DKKANVFN----------------------DPFALSSMYST--NAERQ---------------------------------------------------------------------------------ELGKLYHSHLA-IS---DQ-------------YGANHKYSIQISKECFKEIDYPKTGIH---------GTIPKE----------VNIRLQTVGY-PHYMQRENSTRVY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQSK------------------------------KIMGKMYDQIDQLVYIGDFLPNIS------------------LDKSNLV---------------------------------------------------------DGY----------EIYLNSAKI-LYSQ------YKLQVHSLLRHYSAE-----------------------------------------------------------------SEESIMIGFLDQGFISDKVSKD-------IKGEMKNDYIKIQQTFENEFL----------------------------------------------------------------KEFGE-------------------------------------------------QHKENCLLIHRVNIEKKVSAWYHVAYSDLK-----------------------------DDRAL--GFYWIARSFKQMTLDQESQKKKNILVNSILDHMNKKKDTLFPLYESRLLIVKELTSFL-----------------------------------------------------------------------------------------------NTLNDTVFKESTLEIIGSTATMLFDENSNLNLYLKLENQNDHMNLAEKNEILNQLKDEIKTSSFI---------------------------SAEACSIIKIQGDIPLFKFKIDKIQCLIGLETSKWYETLVQQQYITKNPSILSILFSIIDWSINSLFVDSETGEIINNSKVYSSLNLQKVIVENSMIPSIFNNKNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKHSVKNLTKSNLFSLLIDFCIINKYIDKCNPNELTNTTSNLTIGNWVKLIEIASRYFSVDNNNNNNNKGHKRKKNKNLD--------EYNTNNLGDTILSFFRFYSDSFGRSIYGNEPFIIKLFSKDANDIENQILNPSTESHKTALLFYQESFRHAFHSLSTFVSVEEFLSNCLKTTKKIMPIKKNQINLLQERSVNEEIVKNVQLCGCSIKIDTNVKNPYILIDGKPQQIRLAQNAIRDLLSIKTENYNLAITKRNNKRKNFTLGDFAKNKIK   [2417]
'gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------METKDVHYKPTKLPQEKPMIPKFKEGVEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIALFLVDRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSKEYDVLVSTVGSLVNLLEVRHLNILDFYFITFDEVHHATGEHDFNKVVDYIRKTDLNYRPRILGLTASLVSIGNSTIDIVQRSIKDMEER------------MLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETSICEFLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALE-RLDKYSKQLESIYIEYTKVLIELYALLSVLSTEGPKQVLT------------RLDLLMQSTNQENELYNKLLELRYYISGQYEDRESNFEKGSTRYRKLISSLEYAISDASDGELQKDLRI----------------LVFVETRFGASNLTSMLKKEPFQEYLHTKRLVGHNGVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARSKNESKFIIIYNDDKDLKILDILSSENLLNNSINQILSNRERQAITKNQFLNWKKLNINNEYFTNNQLDGGPLDKDIKCVILSIYHIEIDIETFRELLLFQLPDIINQVDQVSIRMEGDDEYLSSYIIVILNTCIDKEQSIYRLKSLLNINGLKYWMIDRSSFHFEDDNIN-------------------------DLSQSKNKNYSIRSFEYGNMSSPTKYHGIGQLDDSFELFYGKREMFFTKKTR-------F--------------QRYRLNLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTDIESTFLLVNDKYQNI-------------VHILLIVKRPLIFEE--------------------------------------------------------------------------------EKK-THIVFWNKSKPKKDDFGQAFVYRLTLSTI----------DNEIKEVIKPLIANGFRMYESSLELNCFIQGGINKNNNCMIIDLNL--------------------------------------------------------------------------------QYIKRNLEIHYLLQCLQSQSSYGRVLNQ------------------------------------DFIVEINNLLAFG------KQEEAEFIITSLISK--------------RTKFINYKEFIGDCLKNFLPDPYYAKKKDLSTKS---------------------GEFTMIRDVFITPSRTIFI----QPTLQRSCRAVRKFG---SSNFIVVKIVNESL-----------------------------------------------------------EPLQGVNNKHPLHENRIKPILEGGILV-------GGEIYSYA-GNSN-----------------SQLREYSSWFVS-------------------------------------------------------------NQIGTHTVKIWSG----IEH----VD--NVRKFFRCIGL-----MFSTTIPT---------------VTL-PQNRI-YR---IQDIT------------------RNT---HEFTEGCGEIGPELAKHLNENYN------------------------------------------FRPSTCAYQVRI----GGNKGVLVVNNQ-------------------------AP----------DPSGIYIR-PSMVKF-----NPI--DC---------------------GDEHRT-LEICSV-----------STTSRCKLNRQVISLLSTLGTQDNV---------FFALQDHYLNQV--------AQIVNDTNASKQAIVEFFPDITEGELY--------------------------------------QDPYIRRILISLYKLKM-ERIQQKCHIEIKD--SRMLLGVCDPTN--SLPPN---------------------TVFVQLEEEDE------------------------------DDDDDGRKYEKVIEGL-VMVIKNPCTHPGDVRYLKAVDN-----------------IR------------L--RH-----LRNVLVFSTKGD----VPNFKEISGSDLDGDRYFFCYDKSL--IGN---RSESETAYLVVETVSNN---------------DKKANVFN----------------------DPFALSSMYST--NAERQ---------------------------------------------------------------------------------ELGKLYHSHLA-IS---DQ-------------YGANHKYSIQISKECFKEIDYPKTGIH---------GTIPKE----------VNIRLQTVGY-PHYMQRENSTRVY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQSK------------------------------KIMGKMYDQIDQLVYIGDFLPNIS------------------LDKSNLV---------------------------------------------------------DGY----------EIYLNSAKI-LYSQ------YKLQVHSLLRHYSAE-----------------------------------------------------------------SEESIMIGFLDQGFISDKVSKD-------IKGEMKNDYIKIQQTFENEFL----------------------------------------------------------------KEFGE-------------------------------------------------QHKENCLLIHRVNIEKKVSAWYHVAYSDLK-----------------------------DDRAL--GFYWIARSFKQMTLDQESQKKKNILVNSILDHMNKKKDTLFPLYESRLLIVKELTSFL-----------------------------------------------------------------------------------------------NTLNDTVFKESTLEIIGSTATMLFDENSNLNLYLKLENQNDHMNLAEKNEILNQLKDEIKTSSFI---------------------------SAEACSIIKIQGDIPLFKFKIDKIQCLIGLETSKWYETLVQQQYITKNPSILSILFSIIDWSINSLFVDSETGEIINNSKVYSSLNLQKVIVENSMIPSIFNNKNHNNTT----------------------------------------IIIIIIIIIIIIIIII---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1883]
'gi|14030853|emb|CAC35915.1| Hypothetical protein M01G12.12 [Caenorhabditis elegans] >gi|13655331|emb|CAC35914.1| Hypothetical p'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSGQNGSIRLEFPEFDDSIDRIEYGIEMMLNSVPAI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQHHKIDIKSRHEMEIVEEQDCDSFFEVNYDVASAKFDQTIIDAMRAYLFSLNAN----WPRPYIVLHGSDFWAKTLDCYI-EVPLAAMYFGNIQGY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYISHWQISFSGK------------KISADANELLNKIVAEFEFDRADMITVTFQC-----------------LKRKRINYQTIIR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KDTIRRIIVDPQVD-------------MNKTRIHFELNCPPLIRQG-------------------------------------------------------------SVDDDKPSTQKPFYKRTNRYSCIG---TKEYGSPHESAISDSPFFTIELQKQ-ESDGNSGDSNDTLYRVLSRLRSRTGVQIEFANFPKVDVP----------------------------------------------IGKVYPYLRY---------PTSSKSYAFECFIYNCFPSKMKII-DAQSINENDGRQFAITYLIECLLSRGAIVKDQVL-----------------------------TDEICWGQFLGLITHYYLE-------NDKLCEAALEDLIYL-----IDGRKRIGSIWKCFHKICQKRLVMQLTNGMSEQEIE----------------------------EGYQRVRKVIFTPTRVIYT----PPEMIMGNRVLRNFD-RDGTHVLRVTFRDDNN------------------------------------------RKMRANATG------------------ELLDICVKKYLEHGIVV-------ANRDFGFL-GCSS-----------------SQMRDNGAYFMVKNTDNRHKNACKMNS---------------------------------------------KFKPNIDSVRNQLG---NFLQ----IE--NIPKLMARLGQ-----CFTQSRLT--------------GVSL-GPDNY-CL---THDLSGGRSSN------------GSE---YTFSDGVGMMSYEFAQEVSRLMS-------------------FGR----------------------SVPSCFQFRY----RGMKGVLAIDPLLDKERNWQE----------------KHGISLS-----KNIKCVFR-PSQIKF-----EGK-------------------------QILGDQ-VEMVKY-----------SSPVLVALNKPLINILDQVSEMQSLECHRRITSRIEELMDLQTLSF--------AKQMTDEACFRNKLKEFPRR----------------------------IDIDYLRTIWGFTLS--NEPFFRSLVKASIKFAI-TKQLFKEQIQIPSELGRSMLGVVDETG--ILQYG---------------------QVFVQYTKNHR-----------------------NILPPRDS--NRKVLGSEIVTGT-VLLTKNPGIVPGDVRIFEAVDI-----------------PE------------L--HH-----LCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSVIWDQKL--LLE---RNEEAFDFAV---EKNLQ--------------TYEWED------------------------IDDLMRDVYVE--YLKKD---------------------------------------------------------------------------------LVGLIANSHLH-NS---DQ-------------YGLTSRVCMNLAKKSCQAVDFSKSGKP---------PDELQTTWKTDDATGEMIPPERAERV-PDYHVGSDH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPK---YVSP------------------------------RLCGKLFREFQGIDNAM----------KISEEKSEQYKIE--VDESIRV---------------------------------------------------------DGF----------EEYMEDAKK-QLAS------YNGQLKSTMDTYGIQ-----------------------------------------------------------------SEGEIMSGCIIE---MRNRISDSDQDD-MSFYNTNRMIETKMTALVSKFR----------------------------------------------------------------TIFFQ---QFGGFQEVCTL-LPDAYNESNFFNFRCE--------------------------NPNEEIRKKAVAWYRACYECAKSTR--------------------------EPRKL--SFAWIAY------------------------------------------------DVI-----------------------------------------------------------------------------------------------AKIKETKVLENVEMNIGGANPMYTYLEHHRARYINDHVDDFEKFRRNLDNLITGKESKKAVFILQRYIYMIPGLDSVMFVLMRWGEALELFEGRSMSIYHFLLMFIMFSTGQLASADGNAEQFFGKLDVEEYRRRKKNGTLEPDIPLTRHQRSDM--------MFKFFQLMGSRKFRTMRSISFRPLGFSSVFMSGEWMVFHEPALKTYYNIMFNLRFEELPISTDPTTTHETRLRECEPFVIELPEKANMDMLIKKLTEKSKVSQLNLRRQDKN----KKTSNSTVRYIVSASGTFESTQQLRKLVTVTSPIKNHWEGQDLAQQMANFCYLKIMKDDL------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1579]
'gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var. neoformans B-3501A]'                         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSTKYGIHAYPPKFSDPQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIKRL-MADYGQRSMPRPGKGPERTETS--------------------------------------------------------------------------------------------------D----------------VDRFQFWPDAIAMGSLKGR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QFTQVFGAA--CIKGYDERSHGRSILAFDLKREVLVIKAEMK-------L-----DPKILPPALNPLYAELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FDDINHQGIHITKRPLPD---GLTQKDALEVTVTVSCRRPPKFFAPFDPGDKAPDYMAGTKYLIDRR------------------------------------------------RATALDFAVSGVNERDANAIPAIPEGPCAYPTFWNTYRWVFRMG-------TRQYDKLLACAHKIRALAQADPEMDLMSLTSER----------------------------------------------ARWTVRVLTGEDFKRVYAPP------------------------------DLSAIPFSTRTLLEGLIGHGIMAPGDTA------------------------------------ELIAMLRKVSS--------STAFHDRILEALFSQ---------------QKIRDIKHLIPKLA-----------------------------AFLRRRPPYIQPHLVLIRTVLVTPTRLLIG----PPQYEPSNSVTRRYH-DKLDGIIRVQFTDEED------------------------------------------RLFIADNMK----------LIDSINPAVGIMARVRRALQFGLII-------GGETFYPV-ASSA-----------------SQQKEHAMWFIN------------------------------------------------------------NKVIDGLELRNWMG---TVHE----T---VVAKHAARMGL-----PFSTSRIV------------------NMKINIGEE---LPDIE------------------RNG---RCFTDGCGIAGREVLNQAALALN-------------------EK-----------------VG--INSQPSAIQFRL----GGAKGVLSDWSQ-------------------------LV----------NEYEIRLR-PSMIKF-----KSD----------------------------LAD-LNVIRI-----------AKYQAAFLNRQFINIMCANGVPHEL---------IIGIFEDAIADIKGFKDRVWNNAVTENDQQLIALC------------N--------------------DFPLAQLIKSGFN----ENPLLLDVAAIIECRAL-QDLKWRARVKLLD--GVYLIGIADETG--TLKEG---------------------EVFCQFQENDE--------------SP-----------------------PKIVVNE-VLVCRAPALHPGDVRRAWAVDN-----------------PE------------L--RH-----LKNVIVFSTQGM----RDMPSMLGGGDLDGDDYTLIWDQRF--VQS-L-KVYDPMDYEA---PDPI---------------SV-KHV------------------------TQKHLNENFVQ--YILND---------------------------------------------------------------------------------VLGQVDNCHLA-LS---DM-----------Y--TPFDPRCLHLSEIHSTAVDFAKTGQA---------AALDPS--------------LRPKEW-PDFMDKDDV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVV---YEST------------------------------GILGKIFRIVQADAHFS---------------PSDLEQMGYPTDPRITR------------------------------------------------------------------FPLHESLLDRLKP-LKAS------YERDLQYDMRRYRV------------------------------------------------------------------YEPEIPSGIAIR---NKRRKRV-------RDQNLNEPLREAYNLLVNNVR----------------------------------------------------------------ETAQK-----------------------IVNDFEFK--------------------------TTLTPMQVVARHCYALTYEEVHVRQWEQ--ALAEGKFGEKPEDDEDSERLRPKPLI--SFAWCFC------------------------------------------------QEL-----------------------------------------------------------------------------------------------VQIVSQSASTPVIPVAVAHSE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1123]
'gi|39975737|ref|XP 369259.1| hypothetical protein MG06205.4 [Magnaporthe grisea 70-15]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVFLSGLPTE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLTARSLEQQLTPLILKLGIGKHDFGCEKAARSKFA---------------------------------------------------NLTFR-HPEQARLFLRHYGEVPESSTNK----------------ISSLPQGQAQPSPFGRDRAPRSTARLRLLGKPIWCRKSIRAVNPIT---------LRGMDESHRRHQEKESKALTGHRDQDKH----------------QHGVDFDVMGVACGHYAFV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQQLAYFPEREWPWMCKASFTKLNLHVRRSDG-----------------------TIRMRIP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSTIHEIVWYTHDDRQG--------------TLTLTLDSVPWFLTE---------------------------------------------------------------ECTLDDLMARIAIGSGKIKENQQNRMQALDEQHAEIVGTCLTYHFNISSH------------SISRDIKMLERKSFTNITRYKLAIWNTP----------------------------------------------HPTLGSFKDKALQLRQELKAATSASIN-----------------------SGKSLPHSHLFVLQALFYNGYLHPATVL------------------------------------EILHQLFRRFYEDRLSG--RTFIAPEAVKSLMDAECIPWPSPY----EDPEYFEVSSLMKWIYE--------KNEEFQGGFDLRTGQLRQN------------SNLTHIYRVVVTPTRITLH----GPEIENKNRVLRKYP-KHQDCFVRVQFCDENT------------------------------------------QDIRFSPKI----------------SYDRVYSRFLDVLNRGIQI-------AGRVYNFL-GFSH-----------------SSLRTHSAWFSA--PFFDQ-----------------------------------------------------GSQHTHASIIKSLG---EFSS----IQ--CPAKCAARIGQ-----AFSETPSV---------------VDL-RDHDV-EVVTHFPDITNR----------------DGS---RVFSDGVGKISESMMHIIWENIP-------------------MKK----------------------NAPTCFQVRW----GGAKGMLALDM--------------------------TL----------KGTKVCFR-DSMTKF-----ESD----------------------------DVHQLEICDS----------GSKPIPLVLNRQMIKILEDMGTDRSW---------FMRLQSYRLQEL--------RSITASAYNTWHFLDAQNVGQAIK---L--------------------GKFINFADKHGMDYR--TDDFMRSVVEAVVLREL-RLLKHKARIPVKY--GKTLFGIIDETG--YLREG---------------------EVVISFGFSQT----------------------------------GEDQPTPPQDGQIVIVTRSPALHPGDIQIAKQVVP-----------------PP---------SHPL--SH-----HINCIIFSQHGQ----RDLPSQLSGGDLDGDIYNVIWDGDA--MPK---ETFDPADYPR---VEAQ---------------DIGRRV------------------------VSADMAQFFID--FMKTD---------------------------------------------------------------------------------HLGVIATRHVI-LA---DQ-----------LDDGTLSQECRTLAGLHSTAVDFSKSGIP---------AELKAL--------------PRANKFRPDFLSPGPITNYHDKGKITLEEYTIS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEAEEEEEEGDGPRYGY---YRSE------------------------------KVLGQLYREIDEEKI---------------------------WNENIRVAV------------------------------DHNKPSFWETFIDWAIKSAATVGA-VSW----------PVRIDSARR-LKSA------YDDHVRGHMSKYSDHPVN------------------------------------------------------------PISEREVFIGAILN---KTGVQTHRQRD---ASHKLRDEFERTANHFARQMR-------------------------------------------------------------------------------------------------------------MGNEGPDCVPLTGYMAELGPSAALDLCLACVCVASEQDVPLVASR--LGISKSPSRRAAGRNGRKDGENSELQ--SFRLVAAT-----------------------------------------------QFL-----------------------------------------------------------------------------------------------RELRVKERELGVGEAGGKGGGGFQLQIGPALQVGKVVNSSVWWLCKGMGIFGSHEFGGKRYPEDVGLKYSKAGELH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1338]
'gi|39581073|emb|CAE57375.1| Hypothetical protein CBG00321 [Caenorhabditis briggsae]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGDEGYRGWIKLEIPCFEPER-HMNNIIRCHTTKLEPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNSYNMRIHTKGQVQAVEEQDCEPFYESNYEIVSSHFSHHLIIAIQNYLKSLSMDRLMPFQLGNLVLHSSDFWSSELTCHLADIPLSAFFFGNIQGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFINHWEVSFWEDTHRRNRLRQKNMQPTASDRQGLNQIRVEFEFDKVDFMTVHFKH--KEGDFEVISKDFRKTRETVTMYYQITVR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTSIRRVIVDPVVN---------DTNGGDRIRIHFELNCPVLIRRA-------------------------------------------------------------YKTEKQEAEAKHQVPHYRRFLVINRGRSANM-YPTPKAITDSPVFTIEFDTS--------VSLEEVYRLISRLRIRTGVSIEFATIPSVDCL----------------------------------------------IWRENPYHRWTFHGSSHLSPTHFSAPIYRDFITTAFPRKHEVC-GSREVDTNRERKFAITYLLECLISRGAVVKDQIL-----------------------------LDDTIWHRFLEVILHYYTK-------DDKLCEAGLEDLVHM-----IDGRKRIGSLIKCFDRICQTRQKNSLVNGLTTEEMR----------------------------EGYQRVRKIIFTPTRVIYV----APETLMGNRVLRRYD-HDGTRVLRITFRDDDN------------------------------------------QKMRTNKTS------------------TLLEKTVNTYLMNGITV-------AGRNFGYL-GSSN-----------------SQMRDNGAYFMEKYSSSQCREYEKMCRMAPPI----------------------------------------TFNPKIQAARKNLG---RFET----ID--NIPKMMARLGQ-----CFTQSRLS--------------GVNL-DRCTY-VT---MYDLTGGKNIK------------GDE---YTFSDGVGMMSMNFAQMVSQVMD-------------------FGK----------------------GVPSCFQFRF----RGMKGVIAVEPFLDDLRQWSI----------------ENDIQEVSEDTAWGLNCVFR-PSQIKF-----ISK-------------------------RHPRDQ-VEIVKY-----------SSPVPVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSF--------AQQMIDETFCRNRLKELPRR----------------------------IDIDYLRTTWGFTLS--SEPFFRSLIKASIKFSI-TKQLRKEQIPIPADLGRSMLGVVDETG--RLQYG---------------------QIFVQYTRNLA-----------------------LKLPPKSA-------SRSVLTGT-VLLTKNPCIVAGDVRIFEAVDI-----------------PE------------L--HH-----MCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSIIWDQQL--LLD---RNEDPFDFTS---EKQKS--------------SFKEEE------------------------IDDLMREFYVK--YLKLD---------------------------------------------------------------------------------SVGTISNSHLH-NS---DQ-------------YGLNARVCMDLAKKNCQAVDFTKSGQP---------PEELERKWRKDEVTGEMIPPERAERV-PDYHMGNDH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPM---YVSP------------------------------RLCGKLFREFKAIDDVL----------KISEERDEQVEIT--IDETIMV---------------------------------------------------------DGY----------KEYMHSARE-DLAR------YNAQLRSMMENYGIK-----------------------------------------------------------------TEGEVFSGCIVD---MRNRISDKDQDD-MSFYNTNQMIETKVTNLYKKYR----------------------------------------------------------------EHFFE---EFEGAWEANTEGTSRGESDTNILQRHCR--------------------------APTQNMMKKAVAWYRACYEEARVTR--------------------------ENKKL--SFAWLMY------------------------------------------------DVL-----------------------------------------------------------------------------------------------AMVKQTKSLTSDDIRMGGSNPLYTMLDAHRSQYLLDNRSVFEDYIRFAPSKNQGEQVARALEIIRMYVETNPGLEEVMFVINEWARASKLFENQPIRNYHLSLLFILFATRQFSSVDGNAAAFFPKIDERGWREEKANGEFKQGLEFMEMKKSQM--------IVKFLEFLASRKFRKLPNVSFRTLRFSSIFMRGEWQIFHVAALKTYYNLLFNLRFEELPVSTDPTMTVRSIIRENEPFVVELPADADRTLVHRKLIEHTGVEEIYMRNMEKSVRGVDEQQKANTRYLVSTRGTLESMYKLRQLVAVKVPIKTYVTGQEISTQMARLCYEKIVKGHIS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1631]
'gi|39587252|emb|CAE57720.1| Hypothetical protein CBG00730 [Caenorhabditis briggsae]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NGESSEEAITVIRPRHPRGVPQSQSQFPRGRSNFSSGTLPYRRSESTPVNTLATGHSNKQLLTTYKID--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RASGSRQRMD-SDYLDPSTSSAFPSNPPSARLNNLSLPVNRGYLQDYHLYPQRPSHYNNQRYNNNHNDGNTKRHSLPSTHILYEKTKHRGGPNVEEQEKVIRML-RAAEESEALAKP-AVVKKAPIELSLDVKITGSMNNEMFGYCRTHMETMKEFFSGKLKESNIDEVNWMKTGMAPRAAYEDKAYVIEAHLILTPSVAAFDKNDLFAQCITKFTRKTKGMLQDQCFLEVPKMHQFFPKITPQHVDINVSAIGLGNCINP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLFLIRGDYISNDNTVCSVKLQSQHNPSDASREFNSYKVAGSSKYLSFARFEHDKRVALLYFGVR-----------LSEFADDGLDHAGFRLNLY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YNTFVRIVVDLSAVNTN--------------SIYIQLKNPPQLWEG---------------------------------------------IPKSTMFHPSKSKVLNLETCTEWIRVLS----------WPGDAERRGIGCTPEAFYQSNWIRIMFRKE---TDDEKLCSANLIDVVTRLASRSNAKVSFGHIFSIRRQLAPSPC------------------------------------------------------------------------------------------LASLGSFRANYALQALITRGSVFMDQLF-DCTDTNIP--DPLEPEDEEGEGELLKQPMNLKDEPMFLKIVRRAMRE-------CPQAAEESLEQLLNA------------------FDERRSIDVIFAFSTMYKTRKVQYERLLNGESLQDVGLARPLP--------KNCVSVAKVIVSPSRVLLM----APEVMMVNRVVRRFG---PDYALRCVFRDDNL------------------------------------------GRLAIRDFS----------INNIDHMSNVVTEAIYNTLKNGIQV-------ADRHYSFL-GWSN-----------------SQMRDQGCYLYAPRVDPISG----------------------------------------------------KVSGTVEDIRVWMG---DFRE----AV--SVPKMMSRMGQ-----CFTQAQPT---------------VKL-ARHHW-LV---EPDMEGGP---------------GNK---FCFSDGCGRISYKLAGQITRKLK-------------------LK-----------------------EIPACFQVRF----KGFKGILVIDPTIDDII--------------------------------NMPKVIFR-KSQQKFGEGGGDQQ----------------------------DES-LEVVKY-----------AMPSPVCLNRPFVTILDQVSKKQSAKCHQRITNRVHYYLERELSSL--------SNMLLNENQAAEELVNRTNLP---------------------------IDWNLASKRAGFQLS--VDPLIRSMLFAIYRYNI-IHHISKAKIFLPPSLGRSMYGVVDETG--LLQYG---------------------QVFIQYSPTIR----------------------------------QTSPEPLLKTGK-VLITKNPCHVPGDVRVFDAVWQ-----------------PA------------L--AH-----LVDVVVFPRHGP----RPHPDEMAGSDLDGDEYSIIWDQEM--LLD---YNETAMVFPS---SQAQ---------------EEDKEP------------------------TTDDMVEFFLR--YMQQD---------------------------------------------------------------------------------SIGRMSNAHLV-YA---DL-------------HGLFSENCASIAQKCAVAVDFPKSGVP---------AEPLTG--------------FEQCDVTPDYMMSGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPM---YYSA------------------------------SLNGQLHRKARKVEEVL----------EEYESKGSIFEGE--YDKMICP-------------------------------------------------------------DDADVFFGSEPKLVQTMN-IRDE------YIDRMQQLLDEYGIE-----------------------------------------------------------------DEASVVSGHAAS---IKRLAGMERDD--YSFYHTDKVVELRYEKLYSVFR----------------------------------------------------------------AKFFE---EFGGEEAHTVNDGKGSRV------------------------------------VCIPAMHEKVRQWYFAAYVQPKKNK--------------------------TGKYIGQSLPWVAW------------------------------------------------DVL-----------------------------------------------------------------------------------------------CDLRRTLMLQIDDAIPRVKYPIAARLEEEMEKSIESHKEKFEALKKQLATKKEAHFMRRYQHFYGPQIIKMLFIIQQWLEREKVLPSKSLTIWQVGRLLVRFGLGALGGNPTIDYE--------KSILAPAVVFKKWITKKAGGDEEPIMSRFEMGSMMIEFLRYMASQSFALANQISLRVFKEMEIVEPSLLYSYQWTPMHNVAYRTFHSISVSGRFDALRLDDDGAEEQVSESKDPILVNESLFSNRNYSDTTPITRPRIFGALKDWSGVKEIISREITGTRKTDLVYVTSVGTVLARQRLARLLLLSGEAIRDAIVNNVVPPEVRDDFI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1766]
'gi|14530420|emb|CAB01701.2| Hypothetical protein F26A3.3 [Caenorhabditis elegans] >gi|17506499|ref|NP 492132.1| Enhancer of Glp'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGDEGYRGWIKLEIPCSLPER-QMGPIVKCHVAKLEPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNEYNIKVLTKGQVQVVEEQDCEPFYETNYEVATSRFSHDLIAAIQTYLKDLSTDHLMPFQRGNLVLHSSDFWSSELTCHLVDIPLAAVFFGNIQGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFINHWEVSFWDDVRRRKSARTRNTEPTQADKIGMNQIKVEFEFDKIDFMTVHFKH--FENDFEVADKDAKRTKQTVTMYYQITVR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTSIRRIIVDPVVQ---------DCNGSDRIRVHFELNCPVLIRRA-------------------------------------------------------------YRTAKQESENRHSVPHYRRYLVINRGRSANQ-YPTAKAITDSPVFTIEFDQS--------VGLNEIYRLLSRLRIRTGVSIEFADIPSIDCL----------------------------------------------IWRENPYNRWTFLNNQHLSPTHFSAPIYRDFITTAFPKKHEVC-GSREVDTNRERKFAITYLLECLISRGAVVKDQIL-----------------------------LDEGIWHRFLEVILHYYTK-------DDKLCEAGLEDLVHM-----IDGRKRIGSLIKCFDRICQTRQRNSLVNGLTTEEMR----------------------------EGYQRVRKIIFTPTRVIYV----APETLMGNRVLRRYD-HDGTRVLRITFRDDDN------------------------------------------QKMRTNKTS------------------TMLEKTVNQYLKNGITV-------AGRNFGYL-GSSN-----------------SQMRDNGAYFMEKYSSSQCREYERIYQIKPPI----------------------------------------TFNPKIQAARKNLG---RFET----ID--NIPKMMARLGQ-----CFTQSRLS--------------GVNL-ERCTY-MT---TYDLTGGKNLK------------GDE---YTFSDGVGMMSYRFAQMVSEVMD-------------------FGK----------------------GVPSCFQFRF----RGMKGVISIEPLLDNLRQWSI----------------SYNISKPSDDSSWSLNCMFR-PSQIKF-----ISK-------------------------RHPRDQ-VEIVKY-----------SSPVPVALNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSF--------AQQMVDETFCRNRLKELPRR----------------------------VDIDYLRTTWGFTLS--SEPFFRSLIKASIKFSI-TRQLRKEQIPIPCDLGRSMLGVVDETG--RLQYG---------------------QIFVQYTKNLA-----------------------LKLPPKNA-------ARQVLTGT-VLLTKNPCIVAGDVRIFEAVDI-----------------PE------------L--HH-----MCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSIIWDQQL--LLD---KNEDPYDFTS---EKQKA--------------SFKEDE------------------------IDDLMREFYVK--YLKLD---------------------------------------------------------------------------------SVGQISNSHLH-NS---DQ-------------YGLNARVCMDLAKKNCQAVDFTKSGQP---------PDELERKWRKDEETGEMIPPERAERV-PDYHMGNDH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPM---YVSP------------------------------RLCGKLFREFKAIDDVL----------KISEERDEQVEIS--IDETIKI---------------------------------------------------------DGY----------TEYMASAKN-DLAR------YNAQLRSMMENYGIK-----------------------------------------------------------------TEGEVFSGCIVD---MRNRISDKDQDD-MSFFNTNQMIETKLTNLFKKYR----------------------------------------------------------------EIFFE---EFEGGWEGNTEAFSRYGRDSNILQRQCR--------------------------APTVQMMKKAVAWYRACYEEARITR--------------------------ENKKL--SFAWLAY------------------------------------------------DVI-----------------------------------------------------------------------------------------------AKVKQDKSLTSDEVKMGGANPLYTMLDDHRSQYLVDNSRKFEAFRQFSTPKTSGEQVKRAHRIIKMYTETYPGLDAVLFMLDEWARISNLFENQSLREYHLSLLFILFATRQFSSVDGNAAKFFNKVDEKSYKQSKTIGDFEPSLYIEEKGKSQM--------MVKFLEFLASRKFRKMANLSFCALDFSSIFMRGEWQIFHLAALKTYYNVLFNLRFEELPVSTDPTTTVRSIIRENEPFVIELPANCDRSLVHRKLVEHTGVKEIFMRNMEKSVRSSDDVQKINMRLLVSTRGTLESMYKLRQLVAVKVPIKTYVTGQDVSTQMARLCYEKIVRGHINI----------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1632]
'gi|3875716|emb|CAA88315.1| Hypothetical protein F10B5.7 [Caenorhabditis elegans] >gi|17533045|ref|NP 495713.1| RNA-dependent RN'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLPFDNDDSSDDATTSVRPKHPRGVPQSQSTFPRGRSNFSSGTLPNRKTECTPVNTLTIGHSNKMLLTTFRMD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNSKSKSEVDVQEQPVHSSSSAFPGN----HLNNFSYPVNRGYLRDYLLQSQRPS------TSKPVDCSVLKRHSLPSTHILYEKTKHRGGVNIEEQEKLVRMLWAAAEESETVAKTRQFSKKQAIELNFDAKLIGSMNNDCFGYCRAHMENIKDVLKTHLKLSKVDEVNWIKVGMVPRAAYEDKSYVIDAHLVLTPNGEVEDENELFSEFASSFTSRITGMLHDQVFLEVPKMHTLFTKITPQHMDINISAIAIGNCPNS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLFLVRGDFISQENTVCSVKLQSHHN-ADASRENSSFKVAGSNKYLSYARFEHDKRLAVVYFGVR-----------LAEFADDGLDHAGFRLNLY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YNLFVRIVVDMSHETTN--------------SIYIQMKNPPHLWEG---------------------------------------------IPKNTIFHPSKSKVLNMETCTEWTRVLS----------WPGDAEGRGVGCTSEAFSQSSWIRLTMRKD---DDNDSVSSTQLMDIVTRLSARSKAKVMFGSIFSIRRKLAPSPA------------------------------------------------------------------------------------------FHSLGSFRANYALQALITRGSVFTDQLF-DATDENIPSSDNDNDEDDDDDVDDTKKPMELVHEPLFLKLVRRGMKE-------CSQATEETLEQLLNA------------------FDERRQIDVVTAFTTMYQSRKIQYERLLKGESLQDVGLAKPLP--------KNCVSVAKVIVTPSRILLM----APEVMMVNRVVRRFG---PDYALRCVFRDDNL------------------------------------------GRLAIRDFS----------INNIDHMSNIVTEGIYLTLKNGIQV-------ADRVYSFL-GWSN-----------------SQMRDQGCYLYAPRVNALTG----------------------------------------------------EVTGTVEDIRVWMG---DFRD----AI--SVPKMMSRMGQ-----CFTQAQPTVYSSVKNIHIVENIQVRL-ERHHW-IV---EPDIEGGV---------------ENK---YCFSDGCGRISIKLATHISKILQ-------------------LK-----------------------EVPACFQVRF----KGFKGILVIDPTIDDII--------------------------------NMPKVIFR-KSQQKFGEGGGELQ----------------------------DEY-LEVVKY-----------AMPSPVCLNRPFITILDQVSEKQSASSHRRITNRVHYYLERELCSL--------SNMLINENQAAEELVNRTNLA---------------------------IDWNAASKRAGFELS--VDPLIRDMLFSIYRYNI-IHHISKAKIFLPPSLGRSMYGVVDETG--LLQYG---------------------QVFIQYSPSIR----------------------------------QTSNRPILKTGK-VLITKNPCHVPGDVRVFDAVWQ-----------------PA------------L--AH-----LVDVVVFPQHGP----RPHPDEMAGSDLDGDEYSIIWDQEM--LLD---YNEEAMVFPS---SSAA---------------EEDKEP------------------------TTDDMVEFFLR--YLQQD---------------------------------------------------------------------------------SIGRMSHAHLA-YA---DL-------------HGLFHENCHAIALKCAVAVDFPKSGVP---------AEPLSS--------------FEQCEMTPDYMMSGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPM---YYST------------------------------RLNGQLHRKARKVEEVL----------EEFETRGSVFERE--YDKLICP-------------------------------------------------------------EDVDVFFGNEIKLVQTLT-LRDE------YVDRMQQLLDEYGIE-----------------------------------------------------------------DEASVVSGHAAS---IKRLAGMERDD--YSFYHTDKVVELRYEKLYAVFR----------------------------------------------------------------AKFFE---EFGGEEINIENDGKNTRL------------------------------------KCTKAMHEKIRQWYFVAYVQPKINK--------------------------AGRCIGQSLPWVAW------------------------------------------------DAL-----------------------------------------------------------------------------------------------CDLRRQLMLDKNDAVLRGKYPIAARLEEEIENSIERQFDKFLKLKDLIESHKDALFLRRYVYFYGDQIIKMLFILKVWLERENVLPSSVLSIWQLGRLLIRLGLGDLLGNPTIDYE--------KSLLMPTTMFQQWISKKEDADEAPILRNFDMGTMMLEFLRYLASQSFASAESISLRVFYEKDIVEPILTKSAQWMPLHLIAYRTFHSIAVSGRFDALHLDDEDAVDQITESKDPILVNESLFSSRNYNDDYPISRSRILQSLKDWSGVKEIIPREITGTRKSDMIYVTSVGTVLARQRLARLLLLSGETIRDAIANNVVPNEVRDEFL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1780]
lcl|Smo_RDR6SDE1SGS2_4_2_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGCLDEQR--VFRVW---------------------RWKKRFTVT---------------------------------GELLPGTQAFAVTGS-VVVAKNPCLHPGDVLVLEAVMF-----------------PE------------L--DH-----MVDCIVFPQQGP----RPHPNECSGSDLDGDQYFVSWDSAL--IPP---KRHPPMNYEA---PPAM---------------ELDHSV------------------------RLEEIQEFFVN--WITSD---------------------------------------------------------------------------------SLGVIAHAHLA-LS---DW-----------SELQTRDPKCMELARLYSVAVDFPKTGVP---------AVMPPE--------------LRPEQY-PDFMEK-RN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRT---YIST------------------------------RVIGKLYRSIRE--SHR---DTN----TSPLVSERSFDQQ--YDRALVV---------------------------------------------------------QGY----------QSHLEEAKF-FKEC------YNSKLTSILNHYKV------------------------------------------------------------------SEAEIMSGSIRS---LARYSRR-------RQGDAMARVVLAAKALVKEAR----------------------------------------------------------------GWFDD----------------------GGEITENE--------------------------------ACAKAFAWYHVTYHPEARK---------------------------ESDLL--SFPWVVL--------------------------------------------------------------------------------------------------------------------------------------------------VAIKKRNSARS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [374]
'gi|67524519|ref|XP 660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4] >gi|40743829|gb|EAA63015.1| hypotheti'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVFVHNLPGN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTKDSLKHQLEPFMRSLAI--TDYDCEKPRKKRFG---------------------------------------------------HILFL-NQSDGKRFLAHHGEERRAGRRR-------------------------------------PLSKLNLLGSQVLCKPSHRKPDEFD----------------LRALENEVQERTNPSRIIEEE----------------GGSVSFILSTASCGYTVFV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNEFSYVPEVELQQYDSIIFRKRNITVHLGN------------------------TPRIKIP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNTIYELVWSKHG------------------SLLLTLVTVPLFFQC---------------------------------------------------------------------------------DGHSRIRLTSPGGPQAAVVGQCLVYQFQVVSS----------SSNLRARMGKVAEYDLSVINYEFKTVHNFD--------------------------------------------------------SWQSQLTLLRDRLGEYT-----------------------RAGTLPFGILFQLQALVYNGYLPPNIVL------------------------------------RLTRKLASITKTRKVQG--RRPISVNSMKRLFNL--IDWPSPF----GDPEEFSIKRLLEVITG--------NDKDLGEGASEAEALFQPA------------PHLAHIHRVVVTPSRITLH----GPETEPLNRILRRFP-NHHEYFIRVQFCDENG------------------------------------------EDIYFNPRI----------------NNSLIFARFKNVFANGFQI-------AGRTYTFL-GFSH-----------------SSLRSRSAWFSA--PFIDDD----------------------------------------------------GSLQSYFTIIKAIG---RFSE----IT--SPARCAARIGQ-----AFSETPFA---------------VNL-KENGI-RVLR-IPDVQ------------------VGG---RVFSDGVGTISAKAVDIIHGVLP-------------------PRN----------------------GAPTCFQIRL----GGAKGMLSLDP--------------------------RL----------RGSKICIR-PSMTKF-----QTD----------------------------DQVNVEICGS----------GSKPIPLFLNRQVIKILEDMGVDREW---------FMTLQELRIEQL--------RKATATTKNTATFVKGQSVADCVK---L--------------------YRLFLLFHNLKLDYK--KIPFLRAVVEAMVLREL-RLLKHKARIPVHK--GITLYGVMDETG--FLNEN---------------------EVFVTYQAMDR-------------------------------------LAAPPQNCR-LLVTRSPALHNGDIQYPYNVVP-----------------PK---------GHPL--QQ-----QRNCIVFSQKGT----RDLPSQLSGGDLDGDLYNIIWDPAA--APK---RVFTPANYPR---NPPL---------------DIKRVV------------------------EREDMANFFVE--FMQSD---------------------------------------------------------------------------------RLGVIATKHMI-LA---DQ-----------MELGTSHSDCKKLAQLHSTAVDFSKTGIP---------VRLKEM--------------PFVNRSRPDFLAPGPLAKIHDRQNIQLEARYVH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYPDDDIDFSPVHKY---YRSE------------------------------KILGKLYRAINEHEI---------------------------WTKDIHTTV------------------------------NSNPTAVWKRIIDSLTGRCIALGAPVNW----------KAHVETARQ-LRSLYYILPTYEDSMSNAMANFSKHPIY------------------------------------------------------------PLTELEVFIGQVLN---NSGAQTNRQRE---RSIKLNDEFERIASFILSQMR---------------------------------------------------------------------------------------------------PSGLITGYVVSACALLMEVEELEKSRRLYGENRRPLLDAFTSSRKEKNDYEPKGL-------------------DRATQKTTFEYGERWTAADVE---------------------------------------------AML-----------------------------------------------------------------------------------------------RQLELNTIV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1203]
'gi|39581291|emb|CAE72312.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HGFIKLEFPESTNSRKEMEIVIGKLLAGLPES----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQRYGIQIEREHPMQVVQEEDCDACFEVNYEVTCEEFKHNIINAMQRYMDGWR--HCVAYAKPTILLHSLDFWRTTLHLQVNDVPLSAIYFGNIQGN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AFINHYEVSFWKENEGKSIRR----------KTPMNNITVDFEFDKCDMICVNFQCVQIEEDRNANAGGDKRNQFNNSI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIRRIIVDTNVT---------DRYG-DRTRVHFELNCPPLIRKG-------------------------------------------------------------IINAD-HADNPYVKPFYQRWKVIKKEWDGHG-WPNEAAISDSPIFTVDFDPI--------VQNFELHRILSRLRVRTGVSIEFGMLPAISVP----------------------------------------------MCKRWPYHRWTIKDGKQLAAADTDAPIFRDFLADLFPKKFEVNDDDKLIDVNDERKFSITYLIECLISRGAVVKDQIL-----------------------------LDEQHWRSFLGIIWRYYKV-------DDKLCESALEDLIHL-----VDGRKRIGSIIKCFDKICQKRQRMQLINCLSESEIR----------------------------SGFQRVRKVIFTPTRVIYI----SPETIMGNRVLRKFD-KDGTRVIRITFRDDNN------------------------------------------NQMRANDTG------------------DLLEMTANKFLGEGIRI-------ANREFGFL-GCSN-----------------SQMRDNGAYFMAKYSQSQLEKFLRTRPNEAQLK---------------------------------------AFKPRIMEVRKHLG---KFDK----LE--NIPKLMARMGQ-----CFTQSRLT--------------GVEL-NRSDY-IR---IPDFEGGKNLA------------GKP---YTFSDGVGIMSYRFAQKVAHAMQ-------------------MGN----------------------SVPSSFQIRF----RGMKGMIAIDPYMDLIHQWNV----------------SYDI--PYQVPNLELKCAFR-PSQIKF-----EAK-------------------------SLPGDQ-IEMVKY-----------SAPVMVALNKPFINILDQVSEMQSLECHKRVTGRVEELMDRQILSF--------ARQMNDETYCRNRLKEFPRR----------------------------IDIDFLRPMWGFTLS--SEPFFRSLIKASIKFSI-TKQLRKEQIQIPKELGRSMLGVVDETG--QLQYG---------------------QIFVQYTQNAA-----------------------KKLPMRGP--NMTVPDAKIVTGT-VLVTKNPCIVTGDVRVFEAVDI-----------------PE------------L--HH-----MCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSIIWDQQL--LLD---RNEDPFDFSV---EKKDPV-------------PFDFDQ------------------------IDDLMRDFYVK--YLKLD---------------------------------------------------------------------------------SVGTISNNHLH-NS---DQ-------------YGLTSTVCMNLAKKNSQAVDFTKSGDP---------PAPLTREWGKDPETGENIPPEGAERI-PDYHMANER--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPV---YVSP------------------------------RLCGRLFREFQAIDNVI----------KISEERDEQFEVQ--IDETLMI---------------------------------------------------------QGY----------EAYMEGARK-DLAN------YNGQLRAIMETYGIR-----------------------------------------------------------------TEGEIMSDCILD---MRNRISDRDQDDKMSFYNTNQMIETRTTALFCRFR----------------------------------------------------------------ENFFK---EFHGFQAACTE-IQNSNDSTNPLNFRCD--------------------------GPSVPMLQKAVAWYRACYEFAQSSR--------------------------ETRKL--SFAWIVF------------------------------------------------DVL-----------------------------------------------------------------------------------------------AKVKEHNMLHGENVEMGGGNPMYIFLEAHRAQYIADNFEEFQEFRTMSCLIE-DDRSVKGVNILRRYMARYDGLDTVLFVLMKWGEAMHLFHNQPIRKYQFFLMFILFATRQIGLADLLSETFIARIVEDDVEN-------ASTVPLTEDKKSHMVCRKEKKRMSKFLEFMACRKFRKLRSISFRALGIPGVYMRGEWHIFHVASIKTYYNILFNLRFEELPISTDPTITLESMIRESEPYTIELPERTEANECLKMLTTKSGCQEVHMRMQSNRAEDKKRADEENVRYMVSARGNVESLQRLKQLTAVTIPIRSHIGGKEVASQMANLCLDKIM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1606]
'gi|46109400|ref|XP 381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1] >gi|42544625|gb|EAA67468.1| hypothetical pro'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVICRNVPLD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSEDNFKRELLPFMKALNI--SDFYCEKPRRKSQA---------------------------------------------------WIKFL-SAQDGSAFLARHGKQRRCENHG-------------KENIDPSNPLNNFTGSHIFRSVPRDIARLHILKTAVFVEQSTKPVDKYA-------------IAHLKHEREKKKQSTTTSNNKGRH----------------APEKAFQVSAISCGGNTFH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPNEVITFVDHHKLLFRPEA-----VTGKFTSQWLTIQVEH------------------------AHRMDFH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NETIQDLIATRSDM-----------------SITLVLTEPPKMYTY------------------------------------------------------------------------RPPTFERSMQEWSRVHGLHAWGLPADCTLSCLVYRIYFYDT-----------ISFDQVLVTLKNKNILAITNHDLPSVRWI------------------------------------------------------EIGAESNHTIGRQTLVEKSKNLL-------------------TSGRVHFALLFQVQALVWNNFINPASGI------------------------------------KLLDLLECVIEDHKKRKV-AVPVTTDAMKKLFQT--IPYPCPG----TEPKELDVVSIMTNIMD--------AEYEARKDDPERDRIYGGKLP----------PNQIWVFKALVTPTRLLLD----GPEAESKNRVLRKYA-DYNDYFLRVLFCEEGG------------------------------------------QDLRFHPKV----------------DNEPIYSQFRRMMDHGIQI-------AGRKFDFL-GFSH-----------------SSLRSHSAWFSA--PFIDKD----------------------------------------------------RQLQSPEAILQALG---DFRD----IR--VPAKCAARIGQ-----AFSETPYA---------------VPI-FENNI--VPRYIPDVKSE----------------DGS---RVFSDGVGTISQEALEAIWPYLS-------------------MNS----------------------AAPTCLQIRW----GGCKGMLSLDT--------------------------RL----------EGKVFCIRQESMMKF-----KSE----------------------------DTGELGICDT----------ASKPLRLVLNRQMIKILEDMGTRDEW---------FFELQNNALDIL--------RNVTADATNTSSFLEHQAIGINMG---L--------------------PRLVKQLEKMDIDYR--RDKFLKAAVEHVVLREL-RLLKHKARIPVDN--GVTLFGIMDETG--FLKEG---------------------EVYVTYDKTYG-------------------------------RNNSRGIKSTLTDGE-IIVTRSPALHPGDIQLVKQVTP-----------------PQ---------GHSL--RS-----LQNCIVFSQKGK----RDLPSMLSGGDLDGDIYNIIWDPEA--MPS---RVFRPADYPR---VTPQ---------------PLDRQV------------------------EPKDIADFFIN--FMRTD---------------------------------------------------------------------------------ILGVIATRHVI-LA---DY-----------NDLGSIDRDCIALAELHSTAVDFSKTGIP---------VNVKAL--------------PRAPRFRPDFLATAPPLKLYDKGQLA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIGEDDEMDDADDMARTKTNY---YQSE------------------------------KILGQLYRNVDEKKI---------------------------WDEDIHRRI------------------------------NTAGPSVWDQLLTIVENEAIKYKLDIDW----------KRQSQEAWK-IRGL------YESSIEDKRWHFSENPRV------------------------------------------------------------PLTEVEVFCGFILN---KRGAQTRRQGD---ASIKLKEEIDRTMTWIVKQIR----------------------------------------------------------------DRGVG----------------------------------------DGAETLSTVTEADGTTSRWREDVVELCWACVAVSCIKKDNAPELY---------------------HGNGELE--SFHIVAAS-----------------------------------------------CLV-----------------------------------------------------------------------------------------------RELNNLARKMETAAGGGFVGVGCDGRSGRGGRGGKNGIECCLMEIKDMDMDTGMSTEGLCASDDLRQERALNARIHGGSDSVECVSEEHRLDFAQTNTWIVNSKLPDSLAKTIEHQKNKNQFPNRVDPYPSAVPWFSEEDRNRLSNKALLAISAAPRDSNTGVHGRANQLKKIRVPGMRNMTINRDLWQVKASYTRMASLKRNAFTPLLLVATMMTISDKLSAWKCLRYVGI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1467]
'gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVFLHHVPAD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNRHGFKRELQPFMKTLRI--QDFICEKPRKKRFG---------------------------------------------------TITFL-HVDDAERFLQAHGEKPNPLGGF--------------------------------------KSNLKLMGVSVCCKSSRYPPKPFA----------------LRTLEHEAQERAKGHRERPEE------------------SVVFGMQQYSCGRCDFV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEQLTYNPELQWSARGTIKFKTRSMIVHVIP------------------------DCRIRIP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSTIVSLIYSTDG------------------TLTVTLSDVPFFFKV------------------------------------------------------------------------IGTSYNSLGIESSRVRLSNLGNGHDQIVGQCLVYQFKVSVV------------HFRANIEKLKDWEITIYRYNLTTARPLL-----------------------------------------------------CSQAVSVEFHKLLSELAECT-----------------------RNRSVPFGILFQLQALAQNAYLHPTTSR------------------------------------KLAEGLRKRFAEDEAAG--RDPITVDGMRKLFNM--IGWPFPG----DDPRVYEVDFLVATLEA--------NHREIQDGFAYREGLHENT------------VNMTKVHRVNVTPTRITLH----GPEMEPQNRILRKFP-NHHEYFIRVQFCDENG------------------------------------------EDLLFNANV----------------DYKDIFGRFIDIMTRGIQI-------AGRTYNFL-GFSH-----------------SSLRSRAVWFSS--PFVDDN----------------------------------------------------GHMQTYFSIVSAIG---KFSH----IT--SPARCAARIGQ-----AFTETPFM---------------VPL-EKHGV-LVST-IPDLTSP----------------DGS---RVFSDGVGAISREVVASIWADIP-------------------LKR----------------------GNPTCFQIRL----GGAKGMLAADS--------------------------RL----------RTAVIQIR-PSMIKF-----DSE----------------------------DMKNLEICNM----------ASRPYPMVLNRQVIKILEDMGASKDW---------FFQMQNEELTRL--------QSITVSTDKTARFLKDKSVAECIG---L--------------------YRLYRQCYWTRLNYK--KDGFLRAIVEAVVLREL-RLLKHKARIPVKK--GMTLYGVIDETG--FLQEG---------------------EVYVTFDRMEG------------------------------------RYAAPPGPGH-ILVTRSPALHCGDIQRAQNVIP-----------------PE---------DHPL--RY-----HRNCIVFSQKGS----RDLPSKLSGGDLDGDLYHVIWDPEL--ESV---ETFAPADYPR---PTSI---------------DIGRDV------------------------RVDDMAAFFVE--FMRSD---------------------------------------------------------------------------------ILGMIAIRHMV-MA---DQ-----------AASGTRDTSCRLLAGLHSKAVDFSKTGIP---------VNMEDM--------------PRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANYDDDDDDADVEEPYRY---YKSE------------------------------KILGKLYRAIDEQSI---------------------------WRKHVLSES------------------------------ETDEEFFWNSVIDDCLRRCKSLPR-TPK----------EEHLDEAKR-IRAA------YDDAIISAMDTYSDHPTK------------------------------------------------------------PISELEVVIGSIIN---RRGVQTRRQRD---RSNKLHEEFDRIATWITSIMR----------------------------------------------------------------RQEIE---------------------------------------------------------DPDPNGLELSLACLYHGIQGSDSGHRKE----------------------VYGELK--SFRVVAAC-----------------------------------------------ALL-----------------------------------------------------------------------------------------------AELDHRDKADPKNCFTM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1188]
'gi|15419599|gb|AAK97084.1| RNA-dependent RNA-polymerase [Giardia intestinalis]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSG-----------------------PHIHSPLRLRSVLGAPNPKNISALVFKV------------------------------------------------------------------------------------------------------------------------------------------------IIVIIATKERVYALLLPQTPILEMSSRHLREFG---SRHLLRVEFAVPRSSSSLPPQRSVSPYSRRHGAELPDRTGSPAQRRHKVHKKPVMIEERIQHSIARAGFPSLTNRRFARSSHSSVLKRAIYNILTTGVYL-------GGSVFVYY-AQGS-----------------GQLKEQQCWFIRAPDYELMYRYMQRFTAFIRDFKYYQSFYANLSSKLYTFYVSPILPSIDHLDSILNKFMRPRAVIFREFAINWLG---DIKE----VQ---ACKICTRRGL-----CFGKSLPT---------------IKV-REEDV-QI---VSDKE------------------YNG---YVFTDGAGEISYDLMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVPSAVQMRW----AGTKGVLILNAL-------------------------L-----------PPRTILFH-KSQVKFSIPNPTET----------------------------QQT-LEILRV-----------AQRSKGMINMQIIVLLSEMGVPDDV---------FLNLVYQDLQKT--------LLFLEPVDRCRHQADLYQLVSRASHSSS--------------------GKLILQMLMAGVDI---TEPCLQFLLMKLQMMQL-RSMKANMRFYVPD--SRIFVGVYDCFD--LLKEG---------------------EVYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGR-VVVAKNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPS------------FVAQEAIRGMYRGVICFPKYYE---GRPMTDCLSGSDLDGDIYWVSWDASL--LGTIQ-REYEPASFQA---NPGE---------------IDAHAL------------------------DLRDIEAGLGNLLRIESDTIDSGTSNWPFLQELKLEQFYNLSCLLRKSYVSAVLKDQCSRGVDLESKKLLYSKINMEPVELILREAFILEWVSGAFFDKTIGRIGSELKI-VG---DM-------------LGYSHPLTMELGRQFFFAIDADKTGWR---------RKAVSCVRKLLAPSFKKLCQSSQEDLEENYLSESSDFLSDCGTRIDEITHYTTDVYATCLNELADSASTQPDESTNSSSTASDESDGSRGEDGSLRFIFSDTEGSDGSIDEPEPHLKVQSPQHVSLKHGLEPELRESSLVNPLSSSSYSKARAKNNTKRISLQKHGYKLDQNSPGRKDVATNEVAEHVHTKKPKAKMSLSAIASAHAALAQLISSRKRASQVSNQATDTQAHPNFPFSRVSLVPNWMIGNTITGLLYPTDNDWLRLKNK-IIYHSK------------------------------SVAGSIYNLLAAGENNSVSILRK----CIEHKEKPFFQAI--VDTLRPV----------------------------------------------------------------------STVLPLNLIKIKDS------IETSMAASLASLSLDLSQLTEVSTKDSLMLLGIQNSVFRRQID-------------------------------------ISVHIFGSVIAD---FNSLSRRGKFHTDIKGSGYSRMTSVYSSQMRKGVS--------------------------------------------------------------------------------------------------------------------------------AEERRARAVILYYLFYTYALLQLLPT--IRYCEQMYGTLELKD----------------------------------------------------------------------------------------------------------------------------------------------------------------------VYSDSRSRTPAKGHRAPLT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLPALQLGQPVHRKARMTCHKHHLASTSRILS   [1377]
'gi|21666386|gb|AAM73688.1| RNA dependent RNA polymerase [Giardia intestinalis] >gi|71071736|ref|XP 768430.1| RNA dependent RNA'     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPSASELHAQYPYIAPSGCFPPRGFDFPLLSLSFPLRYALDQF-------------------------HLNSAGFRALDQSRIIIQLYDLQVSAIENDEDEISLLLAAYNYLVTECHKVDPIYAQEVLDDLVVLHNGQLEGEHKQALIYINTSTVSKDSYSSVFSVYTD----------------------------------------------DRTDASHSNLFELGLFTHLDHFATMSG-----------------------PHIHSPLRLRSVLGAPNPKNISALVFKV------------------------------------------------------------------------------------------------------------------------------------------------IIVIIATKERVYALLLPQTPILEMSSRHLREFG---SRHLLRVEFAVPRSSSSLPPQRSVSPYSRRHGAELPDRTGSPAQRRHKVHKKPVMIEERIQHSIARAGFPSLTNRRFARSSHSSVLKRAIYNILTTGVYL-------GGSVFVYY-AQGS-----------------GQLKEQQCWFIRAPDYELMYRYMQRFTAFIRDFKYYQSFYANLSSKLYTFYVSPILPSIDHLDSILNKFMRPRAVIFREFAINWLG---DIKE----VQ---ACKICTRRGL-----CFGKSLPT---------------IKV-REEDV-QI---VSDKE------------------YNG---YVFTDGAGEISYDLMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVPSAVQMRW----AGTKGVLILNAL-------------------------L-----------PPRTILFH-KSQVKFSIPNPTET----------------------------QQT-LEILRV-----------AQPSKGMINMQIIVLLSEMGVPDDV---------FLNLVYQDLQKT--------LLFLEPVDRCRHQADLYQLVSRASHSSS--------------------GKLILQMLMAGVDI---TEPCLQFLLMKLQMMQL-RSMKANMRFYVPD--SRIFVGVYDCFD--LLKEG---------------------EVYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGR-VVVAKNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPS------------FVAQEAIRGMYRGVICFPKYYE---GRPMTDCLSGSDLDGDIYWVSWDASL--LGTIQ-REYEPASFQA---NPGE---------------IDAHAL------------------------DLRDIEAGLGNLLRIESDTIDSGTSNWPFLQELKLEQFYNLSCLLRKSYVSAVLKDQCSRGVDLESKKLLYSKINMEPVELILREAFILEWVSGAFFDKTIGRIGSELKI-VG---DM-------------LGYSHPLTMELGRQFFFAIDADKTGWR---------RKAVSCVRKLLAPSFKKLCQSSQEDLEENYLSESSDFLSDCGTRIDEITHYTTDVYATCLNELADSASTQPDESTNSSSTASDESDGSRGEDGSLRFIFSDTEGSDGSIDEPEPHLKVQSPQHVSLKHGLEPELRESSLVNPLSSSSYSKARAKNNTKRISLQKHGYKLDQNSPGRKDVATNEVAEHVHTKKPKAKMSLSAIASAHAALAQLISSRKRASQVSNQATDTQAHPNFPFSRVSLVPNWMIGNTITGLLYPTDNDWLRLKNK-IIYHSK------------------------------SVAGSIYNLLAAGENNSVSILRK----CIEHKEKPFFQAI--VDTLRPV----------------------------------------------------------------------STVLPLNLIKIKDS------IETSMAASLASLSLDLSQLTEVSTKDSLMLLGIQNSVFRRQID-------------------------------------ISVHIFGSVIAD---FNSLSRRGKFHTDIKGSGYSRMTSVYSSQMRKGVS--------------------------------------------------------------------------------------------------------------------------------DEERRARAVILYYLFYTYALLQLLPT--IRYCEQMYGTLELKD----------------------------------------------------------------------------------------------------------------------------------------------------------------------VYSDSRSRTPAKATPSSANSASGPSTWSTGASEGTDDMSQTSSSEYKPDTPRRDREHRSRTAFPSLLDSQMHFAYKSDAEGSVVQYLESIATNRALIGISVASNDRLVWSRHTDLPSYKTQTPPPIILCNRYSVTGIPLSEEEKEAQCKLGGFSSVPAFSDISKCLKSLTKKKVSTLPSVVPLSHESSNENGNDMCLAHHLFVNKLPCNWPVSMTNPTIAFSRPSLNDNTVWLWENAWKSFINAQLTLLQSKPRDLQEVPVSALTKQNTFSESYRISVSRNLSAKAGIEEPLCMIHEDLIIKTFNGEDVLVLQEQLNSMIQTCVNATNTSSGTTPSSNYSTSDKTFSTILSEDTPAPSEQSETGTEKISENSTGSYRESSSSVLDDASPTHNQQASIFPQKMRPTHTLLPTGKLSIKDSHSGIDISLQPIFFTRSSLVKINESPNLRSSRFARSYPFVQRRYVEALQICQLVWDICGPELCEAFARCRHQYMHALSPEIIPFVNVRS   [2001]
'gi|42569168|ref|NP 179583.3| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNQASSRIRIALSGRIETALENIYRKHN-LTPINDETRQRLSSIPENLGFELVRKVFSLQAGLIYNLDSFIVSKVNQAVSFTGYPQPANSLSP------SGRHVSRVLQEEMSVDSD-------------------------APSPKSLKSEDKGGSLHIPQLV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKVFLLLSYIPGQHV-------------------------------------------------------------------------------------------------GQVITADEIRLWKDLPMVEYEAAVWDRLGRHYC-PQKDRRMLQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVL--GDDNVLTVKFADVQK---------------------------------------------------------------SSSTYSIDHYFTYKGIAKNGIMI-------GLRRYQFF-VFKDGGKEEKKKD--------LSTKKVKCYFIRTDSTA-------------------------------------------------------FYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSL-----ILSKTKTL-------------------EVDMTGITFDQIDDIHCHDQDGKDVL--------DKNKKPCIHSDGTGYISEDLARMCPLNIF-------------------KGKCLRSESI---------QEACYQDPPLLIQFRMFYDGYAVKGTFLLNKK-------------------------L-----------CPRTVQVR-PSMIKV-----SKDPSLS---------------------NFSTFNALEVVTT----------SNPPKRTKLSKNLVALLSYGGIPNEF---------FLDILLNTLEES--------KSIFYNKRAALNAALNYGEMD---------------------------DQNAAQMILVGIPL---DEPHLKNYLSILLKTEK-NDLK-AGKLPVTE--SYYLMGTVDPTG--ALKED---------------------EVCVILESGQI-------------------------------------------SGE-VLVYRNPGLHFGDIHILKATYV-----------------KA------------L--EE-YVGNSKFAVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPEL--LENF--KPSEPWVSLTPPSKSNSGRAPS----------QLSPEE------------------------LEEELFEMFLTAGFHASN---------------------------------------------------------------------------------VIGIAADSWLT-IM---DRFLIL--GDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDK---------VYLPNK--------------LKPDIF-PHYMERDKK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FQST------------------------------SILGLIFDFVKSQTTEEPSPSS------------------------------------EISKLPCFEDEPVSEFH------------------------------------------------------MQKCRLWYDNYRTEMTQAMKTDK---------------------------------------------------------------------------------------------------------DESANEVIQRYK----------------------------------------------------------------QEFYGAAGFEDSK-------------------------------------------------KSLEELYPQALALYKIVYDYAIHAGVSKC-----------------------------RFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELWG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [977]
'gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase -like [Oryza sativa (japonica cultivar-group)] >gi|56201879|dbj|BAD733'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGSNNTTE-------------------------------------------------------------------------------------------------------------------------------YPLLIQLRLFYNGSAVKGTVLVDKR-------------------------L-----------PPRTIHIR-PSMLKI-----KTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVST----------SNRSGRTFTSNNLIALLHYGGVPEEF---------FMELLQTAIEEA--------DNARFDYAGALNIAFNYADME---------------------------DSMPARMILSGIPL---EESYLQSRLDFLSLLER-KGIK-NGKIPIDD--CYYLMGTADPTG--KLGPN---------------------EVCVILDYGQV-------------------------------------------SGD-VLVYKYPGLHPGDIHVLKATYS-----------------SD------------I--EK-VVGNSKHAILFPTTGQ----RSLADEMANSDFDGDIYWVSLNPKL--LEHF--KPSKPWVPAITPNGTKQ-KGPE----------DFNESE------------------------LERVLFHEFLKTRFAPSY---------------------------------------------------------------------------------ARATAATNWLV-YM---DRLLTV--SLDE-SEKKLIEKKMLKLVDLYYLALDAPKMGNK---------VNIPRD--------------LMVKQY-PHFMDRSPS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHSS------------------------------SILGKIYDKAGDPKPLR----------------------------------SDNVQPTSISSLPCFAERDVPPAI------------------------------------------------------KQLWQHRYNEYLADSSLLYAEEADE----------------------------------------------------------------------------------------------------EEKKIKFQELYEKYK----------------------------------------------------------------HLLYGASEFEETP-------------------------------------------------RDLDDVFSEACAIYQIAYEKARSANNVARC----------------------------GFAWKVAGRALCHFYTVKNEGNAVVCSLQLLRNFRFTKKYRK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [582]
'gi|34903602|ref|NP 913148.1| P0419B01.14 [Oryza sativa (japonica cultivar-group)]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNPHGGGNQMREPALPAAVGAELERLEARLGQLACAEARRQLAELGEPAAARVLRAIGEARQVRTLSGFIRHMANQER--MKRNARGIPTAHSA-ACISGPCREEESISTPLYYNEVQMDAQTPND----------MVEVGSPNQQMPLRLHDNGGSVGHIARVVPDLANPAVGSPYGRISSVLLQNQNCVEGYTPSRGMVSPASNQVAVQINFPTQPMAHALPNDVMMQVGSPGHRMPSGLQRHMEIDSPIQPIVSTPERVSTPSPVRDLSRCVENMAGPSGS-------------------------PPCPIWVMPQIPPAICPDTTNVLREVVSPQML---------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFRKIFMIFAYLSWNKKGVKPPL-----------------------------------------------------------------------------------STPKSSKIEDVLSVDSIRSLKSMSMAQFESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTVVKIFK---GPYIENRRTHLQKVL--GDDNVLVVKFMEISS---------------------------------------------------------------DTETDLSTYLEHYHKVAEEGIVL-------GLRCYRFF-LYKDGGKENKMKEENREEENKKCTSSVRCYFVRTES---------------------------------------------------------GWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFAL-----IVSKTITL-------------------DVDLSEVLVKLIDDEPCLDEHGKEV---------FRDGERLIHTDGTGLISEDLAQKCTYSNS--------------------------------------KGKLLEPQPLLIQLRLFYNGSAVKGTVLVDKRNTQENFIIYDYVKVVYKKSRIYPCFI-----------QDRTIHIR-PSMLKI-----KTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSYTSRITCHLSNRSGRTFTSNNLIALLHYGGVPEEF---------FMELLQTAIEEA--------DNARFDYAGALNIAFNYADME---------------------------DSMPARMILSGIPL---EESYLQSRLDFLSLLER-KGIK-NGKIPIDD--CYYLMGTADPTG--KLGPN---------------------EVCVILDYGQV-------------------------------------------SGD-VLVYKYPGLHPGDIHVLKATYS-----------------SD------------I--EK-VVGNSKHAILFPTTGQ----RSLADEMANSDFDGDIYWVSLNPKL--LEHF--KPSKPWVPAITPNGTKQ-KGPE----------DFNESE------------------------LERVLFHEFLKTRFAPSY---------------------------------------------------------------------------------ARATAATNWLV-YM---DRLLTV--SLDE-SEKKLIEKKMLKLVDLYYLALDAPKMGNK---------VNIPRD--------------LMVKQY-PHFMDRSPS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHSS------------------------------SILGKIYDKAGDPKPLR----------------------------------SDNVQPTSISSLPCFAERDVPPAI------------------------------------------------------KQLWQHRYNEYLADSSLLYAEEADE----------------------------------------------------------------------------------------------------EEKKIKFQELYEKYK----------------------------------------------------------------HLLYGASEFEETP-------------------------------------------------RDLDDVFSEACAIYQIAYEKARSANNVARC----------------------------GFAWKVAGRALCHFYTVKNEGNAVVCSLQLLRNFRFTKKYRK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1222]
'gi|34903600|ref|NP 913147.1| P0419B01.13 [Oryza sativa (japonica cultivar-group)]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNPIGSAEAREPAELPAAVAAELERLEGRLRQLAGAEARRHLAVLGEAGAARVLRAVAESRRVRTLPGFIKYLAKREAAITRRDARGVPTALSAPAFISGPSREEESVYTQLFDNEVQMYDQSPSNEMATSLSNHGMVEVGSPNQQMPFHLHGNGGSVRQIARLVPQLAQLTVESPCGHTSSV-SQNQGCIEVGTPTQAM-----------IDSPARAMAPAVPNDVMMQVGSPCRCMPSGLQNYIEIDSPIQPMISTPRRVSTPSSVQDISRLIENMAGPSVS-------------------------PPSPITAMPQNPTTTCHTTDNALREAASPQML---------------------------------------------------------------------------------------------------------------------------------------------------------------------ALEELGFRKIFMVFAYLASEKI-------------------------------------------------------------------------------------------------ENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAASDRAK-------------------------------GPYIENTRTHLQKVV--GDDNVLVVKFMGKLS---------------------------------------------------------------DTKTDFSTYCEHYHKVAEDGIVL-------GLRRYRFF-VYKDGGKEEKLKQEKIEDKN-KCTSPVMCYFVRTES---------------------------------------------------------GWNMDEPYILSGRTVGQARELFMHISSAPTLAKYMARFAL-----ILSKTITW-------------------DADLSAVYVRRIKDEPCMDRHGNVV---------HKDQEPLIHTDGTGLVSVDLALNCPTSIF--------------------------------------KGKFLKPQPLLMQFRLFYNGSAVKGTVLVDRR-------------------------L-----------PPATILIR-PSMVKI-----ETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVST----------SNRPRRTLTSRFLITLLCYGGVPEEY---------FLELLQSAIEGA--------ENACYDYEDALRIAFSYADME---------------------------DSMSARMILSGIPL---EESYLQHRLDFMAQQER-KGIK-QGKIPIDE--CYYLMDTTDPTG--TLRPN---------------------EVCVILENGQF-------------------------------------------SGD-VLVYKHPGLHFGDIHVLKATYI-----------------RD------------L--EKEYVGYAKYAILFPISGP----RSLADEMANSDFDGDIYWVSKNPKL--LEHF--KPSEPWVQAIKPKKTKQ-KKPQ----------DCNESK------------------------LERLLFHEFLKTRFTPSF---------------------------------------------------------------------------------ALGTAADSWLA-YM---DRLLTD--SLDE-IEKKLIEEKMLKLVDLYYLALDAPKTGNK---------VNIPSD--------------LMVKQY-PHFMGRSFS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHSS------------------------------SILGQIYDKAEDVESLR----------------------------------SCNVQPIGVSLLPCFMEREAPPAA------------------------------------------------------RHLWQHRYEEYLTDSTMLYRAMVDK----------------------------------------------------------------------------------------------------EERNMKFQELYEKYK----------------------------------------------------------------HMLYDASEFEQTQ-------------------------------------------------RDPDDVFSEACVIYQIVYEKARWSNDASRC----------------------------GFAWKVAGRALCHFYALKNEGDTALCSLPLLRKI-IKKDHRRNQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1148]
'gi|42569166|ref|NP 179582.2| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMTTTMDYNSSDQGFSWSEIALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPN--VKTLDGIIIYFLNDAVTVDGSPRLWSGESPVQFPRTPGKKSCRASQAEVSLDRE-------------------------DPSPKFLRGDENGESKHISLLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKAFLLLTYLGG------KSL-------------------------------------------------------------------------------------------GEVISGDEIRQWKDLPMVAYERAVWFKLGQ-----NEERMQLESDSGKTHYYQCHVAPDGSYRLK------GYFLENTGTHLHKVL--GDDNVLTVRFDQLPK----------------------------------------------------------------ESTYCDNPYSKYKEIAKNGIMV-------GLRRYQFF-VFKDGGKAEKKKR--------NSTKQVKCYFIRTGSTA-------------------------------------------------------SSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSL-----ILSKTKKL-------------------EVDMTEITVMQIDDIHCHDQSNNDVL--------DKNGKPRIHSDGTGYISEDLARMCPLNIF-------------------KGKSMRSNNI---------QGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKN-------------------------L-----------PPQTVQVR-PSMIKV-----YKDKNLS---------------------NFSTFNSLEVVTT----------SNPPKRAKLSKNLVALLSYGGVPNDF---------FLDILLNTLEKK--------KTIFFKVRAAGKAALHYGNMD---------------------------DKNALQMIMAGIPL---DEPYLKHYLSKLLKLEK-DDLK-AGKLPIDE--SYYLMGTVDPTG--ELKED---------------------EVSGLAK-----------------------------------------------SQD-VLVYRNPGLHFGDIHILKATYV-----------------KS------------L--EQ-YVGNSKYGVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPKL--LEHY--KPSEPWVSSSPRSKIYTGRQPS----------ELSPEQ------------------------LEEELFKIFLKTGFSPSS---------------------------------------------------------------------------------VIGQAADSWLA-IM---DRFLTL--GDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTE---------VNLPLD--------------VKVDLF-PHYMERNKT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKST------------------------------SILGLIFDTVDFHNAEDTTPS-------------------------------------GISKLQCFEDEPVSEFD------------------------------------------------------MEKCKLWHKDYRKEMCQAMNSDD---------------------------------------------------------------------------------------------------------DDSCNEVIQKYK----------------------------------------------------------------QEFYSAAGFKESK-------------------------------------------------KILEELYPKALALYNVT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [927]
'gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMNNGCDEVSPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPY--LKTLDGLIMYFVKGTVTVDGSPRLSPGESPVQSPRTPAKKSCRASQ-DVSLDLE-------------------------TPSPKFMKREENGGSKYIPPLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKAFLLLSYIGGESLV------------------------------------------------------------------------------------------------EEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFK------GHLLENTGTHLHKVL--GDDNVLTVKFDKVLG----------------------------------------------------------------VETYCNDLYSTYKGIAKNGIMV-------GLRRYRFF-VFKDGGKEEKKKD--------VSTKGVKCYFIRTDSTA-------------------------------------------------------SIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRYSI--------------------------------------------------DQDDKDVL--------DKNGKPCIHSDGTGYISEDLARMCPVNIF-------------------KGKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKK-------------------------L-----------PPRTVQVR-PSMIKV-----YEDRTLS---------------------NLSTFNSLEVVTT----------SNPPRKARLSRNLVALLSYGGVPNDF---------FLNILRNTLEES--------KTIFYSERAAFKAAINYGD-----------------------------DQYTADMILVGIPL---DEPYLKDRLSYLLKTER-NALK-AGRFPIDE--SYYIMGTVDPTG--ELKEN---------------------EICVILHSGQI-------------------------------------------SGD-VLVYRNPGLHFGDIHVLKATYV-----------------KA------------L--ED-YVGNAKFAVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPKL--LEHF--KPSEPWVSSSKPSKIYCGRKPS----------ELSEEE------------------------LEEELFKMFLKARFCKRD---------------------------------------------------------------------------------VIGMAADCWLG-IM---DPFLTL--GDESAKEKYERKKNILKLIDIYYDALDAPKKGAK---------VDLPPD--------------LEIKNF-PHYMERDPKRD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRST------------------------------SILGLIFDTVDSHNAEEPPPS-------------------------------------EISKLWYFEDEPVPKSH------------------------------------------------------MDKFTSWYENYRSEMSQAMMETD-----------------------------------------------------------------------------------------------------KVKRNQLTNEVIQRYK----------------------------------------------------------------QDFYGAAGFEDSN-------------------------------------------------KSLEELYPQALALYNVVYDYAIQEGVAKC-----------------------------TFAWNVAGPVLCKFYL-KKTKDKSVVASTSVLKKLLG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [966]
'gi|3687226|gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMTTTMDYNSSDQGFSWSEIALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPN--VKTLDGIIIYFLNDAVTVDGSPRLWSGESPVQFPRTPGKKSCRASQ-EVSLDRE-------------------------DPSPKFLRGDENGESKHISLLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKAFLLLTYLGGDRLCNRKSL-------------------------------------------------------------------------------------------GEVISGDEIRQWKDLPMVAYERAVWFKLGQ-----NEERMQLESDSGKTHYYQCHVAPDGSYRLK------GYFLENTGTHLHKVL--GDDNVLTVRFDQLPK----------------------------------------------------------------ESTYCDNPYSKYKEIAKNGIMV-------GLRRYQFF-VFKDGGKAEKKKR--------NSTKQVKCYFIRTGSTA-------------------------------------------------------SSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSL-----ILSKTKKL-------------------EVDMTEITVMQIDDIHCHDQSNNDVL--------DKNGKPRIHSDGTGYISEDLARMCPLNIF-------------------KGKSMRSNNI---------QGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKN-------------------------L-----------PPQTVQVR-PSMIKV-----YKDKNLS---------------------NFSTFNSLEVVTT----------SNPPKRAKLSKNLVALLSYGGVPNDF---------FLDILLNTLEKK--------KTIFFKVRAAGKAALHYGNMD---------------------------DKNALQMIMAGIPL---DEPYLKHYLSKLLKLEK-DDLK-AGKLPIDE--SYYLMGTVDPTG--ELKED---------------------EVC---------------------------------------------------------VILNPGLHFGDIHILKATYV-----------------KS------------L--EQ-YVGNSKYGVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPKL--LEHY--KPSEPWVSSSPRSKIYTGRQPS----------ELSPEQ------------------------LEEELFKIFLKTGFSPSS---------------------------------------------------------------------------------VIGQAADSWLA-IM---DRFLTL--GDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTE---------VNLPLD--------------VKVDLF-PHYMERNKT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKST------------------------------SILGLIFDTVDFHNAEDTTPS-------------------------------ALGYLSGISKLQCFEDEPVSEFD------------------------------------------------------MEKCKLWHKDYRKEMCQAMNSDD---------------------------------------------------------------------------------------------------------DDSCNEVIQKYK----------------------------------------------------------------QVSSSI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [905]
'gi|42569164|ref|NP 179581.2| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMNNGCDEVSPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPY--LKTLDGLIMYFVKGTVTVDGSPRLSPGESPVQSPRTPAKKSCRASQ-DVSLDLE-------------------------TPSPKFMKREENGGSKYIPPLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKAFLLLSYIGGESLV------------------------------------------------------------------------------------------------EEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFK------GHLLENTGTHLHKVL--GDDNVLTVKFDKVLG----------------------------------------------------------------VETYCNDLYSTYKGIAKNGIMV-------GLRRYRFF-VFKDGGKEEKKKD--------VSTKGVKCYFIRTDSTA-------------------------------------------------------SIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSL-----ILSKTKTL-------------------EVDMTGITFEQIDDIHCHDQDDKDVL--------DKNGKPCIHSDGTGYISEDLARMCPVNIF-------------------KGKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKK-------------------------L-----------PPRTVQVR-PSMIKV-----YEDRTLS---------------------NLSTFNSLEVVTT----------SNPPRKARLSRNLVALLSYGGVPNDF---------FLNILRNTLEES--------KTIFYSERAAFKAAINYGD-----------------------------DQYTADMILVGIPL---DEPYLKDRLSYLLKTER-NALK-AGRFPIDE--SYYIMGTVDPTG--ELKEN---------------------EICVILHSGQI-------------------------------------------SGD-VLVYRNPGLHFGDIHVLKATYV-----------------KA------------L--ED-YVGNAKFAVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPKL--LEHF--KPSEPWVSSSKPSKIYCGRKPS----------ELSEEE------------------------LEEELFKMFLKARFCKRD---------------------------------------------------------------------------------VIGMAADCWLG-IM---DPFLTL--GDESAKEKYERKKNILKLIDIYYDALDAPKKGAK---------VDLPPD--------------LEIKNF-PHYMERDPKRD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRST------------------------------SILGLIFDTVDSHNAEEPPPS-------------------------------------EISKLWYFEDEPVPKSH------------------------------------------------------MDKFTSWYENYRSEMSQAMMETD-----------------------------------------------------------------------------------------------------KVKRNQLTNEVIQRYK----------------------------------------------------------------QDFYGAAGFEDSN-------------------------------------------------KSLEELYPQALALYNVVYDYAIQEGVAKC-----------------------------TFAWNVAGPVLCKFYL-KKTKDKSVVASTSVLKKLLG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [992]
'gi|3687225|gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNQASSRIRIALSGRIETALENIYRKHN-LTPINDETRQRLSSIPENLGFELVRKVFSLQAGLIYNLDSFIVSKVNQAVSFTGYPQPANSLSP------SGRHVSRVLQEEMSVDSD-------------------------APSPKSLKSEDKGGSLHIPQLV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKVFLLLSYIPGQHV-------------------------------------------------------------------------------------------------GQVITADEIRLWKDLPMVEYEAAVWDRLGRHYC-PQKDRRM------------------------------GPLLEHTGTHLHKVL--GDDNVLTVKFADVQK---------------------------------------------------------------SSSTYSIDHYFTYKGIAKNGIMI-------GLRRYQFF-VFKDGGKEEKKKD--------LSTKKVKCYFIRTDSTA-------------------------------------------------------FYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSL-----ILSKTKTL-------------------EVDMTGITFDQIDDIHCHDQDGKDVL--------DKNKKPCIHSDGTGYISEDLARMCPLNIF-------------------KGKCLRSESI---------Q-------PLLIQFRMFYDGYAVKGTFLLNKK-------------------------L-----------CPRTVQVR-PSMIKV-----SKDPSLS---------------------NFSTFNALEVVTT----------RS------------------------------------------------------QIF------GAAALNYGEMD---------------------------DQNAAQMILVGIPL---DEPHLKNYLSILLKTEK-NDLK-AGKLPVTE--SYYLMGTVDPTG--ALKED---------------------EVCVILESGQI-------------------------------------------SGE-VLVYRNPGLHFGDIHILKATYV-----------------KA------------L--EE-YVGNSKFAVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPEL--LENF--KPSEPWVSLTPPSKSNSGRAPS----------QLSPEE------------------------LEEELFEMFLTAGFHASN---------------------------------------------------------------------------------VIGIAADSWLT-IM---DRFLIL--GDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDK---------VYLPNK--------------LKPDIF-PHYMERDKK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FQST------------------------------SILGLIFDFVKSQTTEEPSPSSGKGPLLVLLYTYNQITKEIINHDMCFT----VVYNLEISKLPCFEDEPVSEFH------------------------------------------------------MQKCRLWYDNYRTEMTQAMKTDK---------------------------------------------------------------------------------------------------------DESANEVIQRYK----------------------------------------------------------------QEFYGAAGFEDSK-------------------------------------------------KSLEELYPQALALYKIVYDYAIHAGVSKC-----------------------------RFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELWG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [929]
lcl|Smo_RDR6SDE1SGS2_6_1_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLKV-----KADPKLA---------------------NCPSFNSLEICTT----------SHKPPVASLSRYVIALLLEGGVPESF---------FIQVVQEAIAKA--------MTPLQDIAAAHRLCSRFSF-----------------------------GDMPRRMILAGIPL---TDHFLRNSLMTMIRTQL-KRYA-KANVPLEG--SYYLMGSADPTN--TLARN---------------------QVAILLENGPL------------------------------------------HRHK-VLVYKHPGMHPGDVHVFEATWN-----------------QE------------L--ES-SLGNSKYVIIFPTKGP----RSVVHEIANSDLDGDLYWICTNEQV--SNLY--KPQLPWQEKRTNGTTAV-PSCL----------GMSPEV------------------------IMSRLVAMFLRAIFKPNF---------------------------------------------------------------------------------AISRAATNWLI-HM---DKYLST--SFDNVREREFRQNCLLELADLYYLALDADKTGEM---------VTIEDR--------------LLCDKIKPHFLVEENSNNPNRRKI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QQQDNVYRST------------------------------SIFGKIYNVVTEVIENEA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KEFT?-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [389]
lcl|Smo_RDR6SDE1SGS2_5_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?DSMLKG-----KADPKLA---------------------NCPSFNFFGDCT------------HKPPVASLSRYVIALLLEGGVPESF---------FIQVVQEAIAKA--------MTPLQDIAAAHRLCSRFSF-----------------------------GDMPRRMILAGIPL---TDHFLRNSLMTMIRTQL-KRYA-KANVPLEG--SYYLMGSADPTN--TLARN---------------------QVAILLENGPL------------------------------------------HRHK-VLVYKHPGMHPGDVHVFEATWN-----------------QE------------L--ES-CLGNSKYVIIFPTKGP----RSVVHEIANSDLDGDLYWICTNEQV--SNLY--KPQLPWQEKRTNGTTAV-PSCL----------GMSPEV------------------------IMSRLVAMFLRAIFKPNF---------------------------------------------------------------------------------AISRAATNWLI-HM---DKYLST--SFDNVREREFRQNCLLELADLYYLALDADKTGEMVILVGVKTLVTIEDR--------------LLCDKIKPHFLVEENSNNPNRRKI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QQQDNVYRST------------------------------SIFGKIYNLVTEVIENEA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------REFT?-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [399]
lcl|Ppa_RDR6SDE1SGS2_1_1_unnamed_protein_product                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?YKLKE-------------------------------------------------------------EAKLSQDLIFLLSVNNVPASF---------FLEHVEKALENL--------HSFFTTRGQVFRELKRCSQDYDV-------------------------GDQTLRMIMANIPM---NNPQMQKNLKKISQDKI-ALLR-KGCVPLPQ--SCYLMGTCDPTKERVLKPN---------------------EVAVIKNGDKV-------------------------------------------LGK-VLVYKNPGKHWGDVHVFDAVWD-----------------ER------------L--NP-YVGPANQTIFFSVRGN----RPVVDEIANSDLDGDFYWVFGLLQL--ISLF--TPSPPWTRIGERTSYPVGNGPS----------SLTPRA------------------------AEYALFEKFLNSRFKTYK---------------------------------------------------------------------------------PMPLSATYWIA-HM---DRYLTLKYADEYSEELELLSETILELIDIFYRALDADKTGEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [311]
lcl|Ppa_RDR6SDE1SGS2_3_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MANIPM---SNPQMQNNLKKITQDKI-ALLR-KGCLPLPQ--SYYLMGTSDPTKEKVLKPN---------------------EVAIVKNGEKV-------------------------------------------IGK-VLVYKNPGKHWGDVHIFDAVWD-----------------ER------------L--NP-YVGPTKHAIFFSVRGN----RPVVDEIANSDLCGDLFW----------------------RIGEKINYPIGDGPS----------NLTSRA------------------------LEYTLFDKFLKSRFTPYK---------------------------------------------------------------------------------PMSQAGIFWTA-HM---DRYLSLKDADEYSDELELISESLEELIDIFYRALDADKTGEE---------LCLHRH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFAWMS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [235]
;
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