#NEXUS 
[MacClade 4.08 registered to Hirai, ERATO]


BEGIN DATA;
	DIMENSIONS  NTAX=37 NCHAR=97;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
[                                                                                                                                             10        20        30        40        50        60        70        80        90      ]
[                                                                                                                                             .         .         .         .         .         .         .         .         .       ]

'gi|18417330|ref|NP 568296.1| COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) [Arabidopsis thaliana] >gi|18056657|gb|AAL58102.1| CSN co'    QIRLASYKFVSLCKILKDHVIALGDPLRGVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYSYYGGMICIG   [97]
'gi|21360467|gb|AAM47349.1| AT5g14250/F18O22 40 [Arabidopsis thaliana] >gi|16930463|gb|AAL31917.1| AT5g14250/F18O22 40 [Arabidop'    QIRLASYKFVSLCKILKDHVIALGDPLRGVGPLLNAVQKLQVSSKRLTALHPEFLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYSYYGGMICIG   [97]
'gi|7573450|emb|CAB87764.1| putative protein [Arabidopsis thaliana]'                                    QIRLASYKFVSLCKILKDHVIALGDPLRGVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYSYYGGMICIG   [97]
'gi|79327852|ref|NP 001031881.1| COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) [Arabidopsis thaliana]'                                    QIRLASYKFVSLCKILKDHVIALGDPLRGVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYSYYGGMICIG   [97]
'gi|50940567|ref|XP 479811.1| putative COP9 complex subunit 3, FUS11 [Oryza sativa (japonica cultivar-group)] >gi|42407907|dbj|B'    QIRLAPDKFLSVCRVFKNEVMQLNAPIRGIAPLRAAIRKIQTSSEELTPIHADYLLLCLLAKQYKAGLSVLEDDILEVDQPKDLFLYCYYGGMIYIG   [97]
lcl|Smo_COP13_2_1_unnamed_protein_product                                    QIRYCPDKFNSLCRKLREHAMNMHRPIRAVLPLQVAIRKFQPSSEYLTPIHADFLLVCLLSKCYKAAAPILEDQIFEIDPPKDYLLYCYYGGMVQIG   [97]
lcl|Ppa_COP13_1_1_unnamed_protein_product                                    QIRLAPDKFNSVCRRLRDQAMHLHEPMRAILPLQCAIRKLQPSSEYLTAIHADYLQMCLLSKCYKASLSILEDDIFEIDQPRDFLLYCYYGGMIYIG   [97]
'gi|76644131|ref|XP 584631.2| PREDICTED: similar to COP9 constitutive photomorphogenic homolog subunit 3 [Bos taurus]'               HIRYATDTFAGLCHQLTNALVERKQPLRGIGVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKAKHFLCYYYYGGMVYTG   [97]
'gi|57525053|ref|NP 001006163.1| COP9 constitutive photomorphogenic homolog subunit 3 [Gallus gallus] >gi|53133626|emb|CAG32142.'    HIRYATDTFAGLCHQLTNALVERKQPLRGISILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|62857779|ref|NP 001017238.1| COP9 constitutive photomorphogenic homolog subunit 3 [Xenopus tropicalis] >gi|89268705|emb|CAJ8'    HIRYATDTFAGLCHQLTNALVERKQPLRGICVLRQAIDKMQMNANQLTSIHADLCQLSLLAKCFKPALAYLDVDMMDICKAKPFLCYYYYGGMIYTG   [97]
'gi|45829710|gb|AAH68179.1| COP9 (constitutive photomorphogenic), subunit 3 [Mus musculus] >gi|74210753|dbj|BAE25027.1| unnamed'     HIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|12804885|gb|AAH01891.1| COP9 constitutive photomorphogenic homolog subunit 3 [Homo sapiens] >gi|23238222|ref|NP 003644.2| CO'    HIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|51260717|gb|AAH79143.1| COP9 constitutive photomorphogenic homolog subunit 3 [Rattus norvegicus] >gi|51948372|ref|NP 0010042'    HIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|27696965|gb|AAH44034.1| Cops3-prov protein [Xenopus laevis] >gi|55976497|sp|Q7ZTN8|CSN3 XENLA COP9 signalosome complex subun'    HIRYATDTFAGLCHQLTNALVERKQPLRGICVIRQAIDKMQMNANQLTSIHGDLCQLSLLAKCFKPALAYLDVDMMDICKAKPFLCYYYYGGMIYTG   [97]
'gi|73956058|ref|XP 536667.2| PREDICTED: similar to COP9 constitutive photomorphogenic homolog subunit 3 isoform 1 [Canis famili'    HIRYATDTFAGLCHQLTNALVERKQPLRGISILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|39795809|gb|AAH64288.1| COP9 constitutive photomorphogenic homolog subunit 3 [Danio rerio] >gi|55976433|sp|Q6P2U9|CSN3 BRARE'    HIRYATDTFAGLCHQLTNALVERKQPLRGISILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|28279587|gb|AAH45415.1| COP9 constitutive photomorphogenic homolog subunit 3 [Danio rerio] >gi|53292634|ref|NP 955979.1| COP'    HIRYATDTFAGLCHQLTNALVERKQPLRGISILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|2688989|gb|AAC14197.1| JAB1-containing signalosome subunit 3 [Homo sapiens]'                                    HIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|73956068|ref|XP 864801.1| PREDICTED: similar to COP9 constitutive photomorphogenic homolog subunit 3 isoform 6 [Canis famili'    HIRYATDTFAGLCHQLTNALVERKQPLRGISILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|55239217|gb|EAA11895.2| ENSANGP00000004286 [Anopheles gambiae str. PEST] >gi|58388711|ref|XP 316484.2| ENSANGP00000004286 [A'    QVRYAPQVYYELCHHLTTALVKNKQHIQGIHVLVLALEKIRLFNAQLTPIHADLCQLCLCAKVFNPAIRLLDCDIAAIATTKYFLLYYYYGGMIYSA   [97]
'gi|66515345|ref|XP 624761.1| PREDICTED: similar to COP9 constitutive photomorphogenic homolog subunit 3 [Apis mellifera]'           QVRFASDIYAELCHLFTQTLVELQIPLRGIELLCRAIRKIQLFDSQLTSIHADLCQLCLLSKCFKPALEFLDIDVTGINQSKYFLLYYYYGGMIYTA   [97]
'gi|63102475|gb|AAH95590.1| Unknown (protein for MGC:111903) [Danio rerio]'                                    HIRYATDTFAGLCHQLTNALVERKQPLRGISILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKAKHFLCYYYYGGMIYTG   [97]
'gi|66802304|ref|XP 629934.1| hypothetical protein DDB0219696 [Dictyostelium discoideum] >gi|83776746|gb|ABC46695.1| COP9 signal'    QVRLAPAQLSQLSKFYTEALYELKQPIRGVAVLKDALNILSDNTTTLTPIHTDFLQLCILSKCYHQALPLIESNITHINPIKDILCYFYYSGIIFTA   [97]
'gi|54641974|gb|EAL30723.1| GA14892-PA [Drosophila pseudoobscura]'                                    QLRFAICAFYETCHLFTDYLVQKNLSILGIKIMARAVDQIRQIDSQLTPIHADLCLLSLKAKNFNLVLTYLDGDITDISTAKYFLLFYYYGGMIYTA   [97]
'gi|4732105|gb|AAD28606.1| COP9 signalosome subunit 3 CSN3 [Drosophila melanogaster]'                                    QLRYAVCAFYKTCHLFTEFVVQKNLSILGIRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVALPYLDADITDISTAKYFLLYFYYGGMIYTA   [97]
'gi|24667760|ref|NP 524190.2| COP9 complex homolog subunit 3 CG18332-PA [Drosophila melanogaster] >gi|7296363|gb|AAF51652.1| CG1'    QLRYAVCAFYETCHLFTEFVVQKNLSILGIRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTAKYFLLYFYYGGMIYTA   [97]
'gi|17946314|gb|AAL49197.1| RE63441p [Drosophila melanogaster]'                                    QLRYAVCAFYETCHLFTEFVVQKNLSILGIRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTAKYFLLYFYYGGMIYTA   [97]
'gi|56758530|gb|AAW27405.1| SJCHGC02823 protein [Schistosoma japonicum]'                                    SLQKVPSYVRIISHEFTNCLINMEVPHKGISCMITAIRKLQKCLGQLTPLHCDLCQLALAAKMFSPTLSVLDTDILEIEQAKDYLLYFYYGGMIYGA   [97]
'gi|71004776|ref|XP 757054.1| hypothetical protein UM00907.1 [Ustilago maydis 521] >gi|46096858|gb|EAK82091.1| hypothetical prot'    QVQLAADKVTQLAASFTALGDRGTNPESALQLLQALASRFLTSSESITTLHPMLAYQYLKTARYAEAATMLDLPLIDADTHSDVLQYFYYAALIYIK   [97]
lcl|1200_Cre_unnamed_protein_product                                    QIQAAPDVFCAVAKKLKEHVLAAGSPRRGILPLRCGLRALQPAPEVLTPLHADFFQLCLLSRCYNAAAEVLGQDIYDVSPPTDLFLYCYYGGMLAIG   [97]
'gi|50255038|gb|EAL17778.1| hypothetical protein CNBL2910 [Cryptococcus neoformans var. neoformans B-3501A]'                         QLRICHQRVAAFAWGLLRLSQQLSKVKLVIPAITSLIQKLNY-HQTFSPIFGALLEACLVTRQFDHPSLGLVLDIIFLDVYLDILTYYHHAGAVTMA   [96]
'gi|57228713|gb|AAW45148.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21] >gi|58270598|ref|XP 572455.1| hypo'    QLRICHQRVAAFAWGLLRLSQQLSKVKLVIPAITSLIQKLNY-HQTFSPIFGALLEACLVTRQFDHPSLGLVLDIIFLDVYLDILTYYHHAGAVTMA   [96]
'gi|67539256|ref|XP 663402.1| hypothetical protein AN5798.2 [Aspergillus nidulans FGSC A4] >gi|40739117|gb|EAA58307.1| hypotheti'    QIRYVGHEWRELVDSVANAALSVSKP-LAVKMIRDALERLNTA-GVFTSLHLMLVKLALLSSSYTYVLPVLDKLLCHFPSYRDHLQFYMYSGMVYMA   [95]
'gi|38566827|emb|CAE76134.1| related to JAB1-containing signalosome subunit 3 [Neurospora crassa]'                                   QIRCKGSTWSDVLKEAYSERGLFPAS-VAVELVTAALLRLDPSGSIITSHHCNLVELAYNTGNVGALLPLIEKPIIYMPASAAVLQYDFLCGLCFIE   [96]
'gi|39974333|ref|XP 368557.1| hypothetical protein MG00687.4 [Magnaporthe grisea 70-15]'                                    QIRYMGVAFSDLFSATGRRNVMPPT--IAVPILADALLRLDPSGSVLTSNHIFLMKLAYNSNFIGPALRVAAKRIVHYPGALQVLEYDWLVGLLYCA   [95]
'gi|46137313|ref|XP 390348.1| hypothetical protein FG10172.1 [Gibberella zeae PH-1] >gi|42545231|gb|EAA68074.1| hypothetical pro'    QVRYVGVVFRKLLEHVAEGKLFTSA--VSVEAVASALLRLDPTGSMFTSTHLALVKIAYQTTWIEPALKVLDCDTTFFPGSTTILEYYHLSALCYMS   [95]
'gi|39587573|emb|CAE58511.1| Hypothetical protein CBG01662 [Caenorhabditis briggsae]'                                    HLKLVPEFIFPLIRSVGCYCMEKKHKEIGQKIISKALATMYPPSNVLTSAHSVLFACALKTKDYSSVEPFVNIHIDEVANPKFVLDYLYNGACVLIE   [97]
;
END;


BEGIN CODONS;
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BEGIN ASSUMPTIONS;
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	EXSET * UNTITLED  =  26-27 43-44;
END;


BEGIN MacClade;
	Version 4.0  87;
	LastModified -1062346352;
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END;