#NEXUS 
[MacClade 4.08 registered to Mineko IWATA, NIBB]


BEGIN DATA;
	DIMENSIONS  NTAX=121 NCHAR=1965;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
	CHARSTATELABELS  
		1072  K,  1073  N,  1074  O,  1075  X,  1076  1.,
		;

MATRIX
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'gi|15236418|ref|NP 192555.1| KNAT1 (BREVIPEDICELLUS 1); transcription factor [Arabidopsis thaliana] >gi|4689449|gb|AAD27897.1|'     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEYQHDNSTTPQ----------------------------------------------------------------------------------------------------------------------------------------------------------RVSFLYSPISSSNKNDNTSDTNNNN-------------NNNNSSNYGPGYNNTNNNNHHHQHMLFPHMSSLLPQTTENCFRS---DHDQP-NNNNNPSVKSEASSSRINHYSMLMRAIHNTQEA-NNN-NNDNVS-DVE---------AMKAKIIAHPHYSTLLQ------AYLDCQK---------------------------------IGAPP-DVVDRITAARQD--FEARQ--Q---RSTPSVS------------ASS---RD-P--EL------DQFM---------EAYCDMLVKYREELTRP----IQ----EAMEFIRRIES--------------------------------------------QLSMLCQSPIHILNN------------------------------------------------------------------PDGKSDN--MGS-SD-EEQENNSG--GETELPE--ID--------------------PR-AEDREL-KNHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKEARQKLL------TWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLQHPHHAA--------------LYMDGHYMGDGP-YRLGP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [398]
'gi|19908861|gb|AAM03027.1| homeodomain protein KNAT1/BP [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEYQHDNSSTPQ----------------------------------------------------------------------------------------------------------------------------------------------------------RVSFLYSPISSSNKNDNTSDTNNNN-------------NNNNSSNYGPGYNNTNNNNHHHQHMLFPHMSSLLPQTTENCFRS---DHDQPNNNNNNPSVKSEASSSRINHYSMLMRAIHNTQEANNNN-NNDNVS-DVE---------AMKAKIIAHPHYSTLLQ------AYLDCQK---------------------------------IGAPP-DVVDRITAARQD--FEARQ--Q---RSTPSVS------------ASS---RD-P--EL------DQFM---------EAYCDMLVKYREELTRP----IQ----EAMEFIRRIES--------------------------------------------QLSMLCQSPIHILNN------------------------------------------------------------------PDGKSDN--MGS-SD-EEQENNSG--GETELPE--ID--------------------PR-AEDREL-KNHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKEARQKLL------TWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLQHPHHAA--------------LYMDGHYMGDGP-YRLGP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [400]
'gi|19908859|gb|AAM03026.1| homeodomain protein KNAT1/BP [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEYQHDNSSTPQ----------------------------------------------------------------------------------------------------------------------------------------------------------RVSFLYSPISSSNKNDNTSDTNNNN-------------NNNNSSNYGPGYNNTNNNNHHHQHMLFPHMSSLLPQTTDNCFRS---DHDQPNNNNNNPSVKSEASSSRINHYSMLMRAIHNTQEANNNN-NNDNVS-DVE---------AMKAKIIAHPHYSTLLQ------AYLDCQK---------------------------------IGAPP-DVVDRITAARQD--FEARQ--Q---RSTPSVS------------ASS---RD-P--EL------DQFM---------EAYCDMLVKYREELTRP----IQ----EAMEFIRRIES--------------------------------------------QLSMLCQSPIHILNN------------------------------------------------------------------PDGKSDN--MGS-SD-EEQENNSG--GETELPE--ID--------------------PR-AEDREL-KNHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKEARQKLL------TWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLQHPHHAA--------------LYMDGHYMGDGP-YRLGP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [400]
'gi|56236458|gb|AAV84585.1| knotted-like homeobox protein [Populus tomentosa]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME---DYNQMSE----------NTTPRG--NFLYAS---Q-------------------LLAPNSSPYGRTSSGSTVSNQQTQMPLNPFHLQS--------NDQCFQSDTHPIVKTEAST---SHAQ-------------------------------------------------KFHYP--LLRGY------------------------------------QTIN--------------------------------------------------------------QQQQ-GSESSS-EVE---------AIKAKIIAHPQYSNLLE------AYMDCQK---------------------------------VGAPP-EVVARLAAARQE--FESRQ--R---SFITSR-------------DNS---KD-P--EL------DQFM---------EAYCDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMICH----------GPLRIFNS---------------------------------------------------------DDKSEG--VGS-SE-DDQDN---SGGETELPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLGS--LK---QELSKKKKK--GKLPKEARQKLL------SWWELHY-KWPYPS------------------ETEKVALAETTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLH-PQN-AALYM----------D---GHYM-GDGH--YRL---------GP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [368]
'gi|55276122|gb|AAV49802.1| homeobox transcription factor KN3 [Populus balsamifera subsp. trichocarpa x Populus deltoides]'          -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME---DYNQMSE----------NTTPRG--NFLYAS---Q-------------------LLAPNSSPYGRTSSGSTVSNQQTQMPLNPFHLQS--------NDQCFQSDTHPIVKTEAST---SHAQ-------------------------------------------------KFHYP--LLRGY------------------------------------QTIN--------------------------------------------------------------QQQQ-GSESSS-EVE---------AIKAKIIAHPQYSNLME------AYMDCQK---------------------------------VGAPP-EVVARLAAARQE--FESRQ--R---SFITSR-------------DNS---KD-P--EL------DQFM---------EAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMICH----------GPLRIFNS---------------------------------------------------------DDKSEG--VGS-SE-DDQDN---SGGETELPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLGS--LK---QELSKKKKK--GKLPKEARQKLL------SWWELHY-KWPYPS------------------ETEKVALAETTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLH-PQN-AALYM----------D---GHSM-GDGH--YRL---------GP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [368]
'gi|1946220|emb|CAA96511.1| kn1-like protein [Malus x domestica] >gi|6016217|sp|O04135|KNAP2 MALDO Homeobox protein knotted-1-li'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDYNNQMDHESS----------GGRGNF--LYASPNLGGN-------------------YGRAASDH----QMGINTFHLQSSGGGGGGGSGD--------QCNFQSPGTHPINVKTEATTSQHGHQ-------------------------------------------------KFQYNNNNNS-HLVS-------------SSRGHQPVIHQLQ------NNFDL--------------------------------------------------------------LNDD-HSLSSN-EVE---------AIKAKIIAHPQYSNLLE------AYMDCQR---------------------------------VGAPS-DVVARLSVARQE--FEARQ--R---SSGTSR-------------ETS---KD-P--EL------DQFM---------EAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMLGN------NNNAPPLRIFSP--------------------------------------------------------SEDKCEG--IGS-SE-EEQEN---SGGETEVPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSS--LK---QELSKKKKK--GKLPKDARQKLL------SWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLH-PQN-AALYM----------D---GHYI-GDGH--YRL---------GP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [397]
'gi|1946218|emb|CAA96510.1| kn1-like protein [Malus x domestica] >gi|6016215|sp|O04134|KNAP1 MALDO Homeobox protein knotted-1-li'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDYNNQMDHESS----------GGRGNF--LYASPNLGGN-------------------YGRAASDH----QMGINTFHLQSSGGGGGGGSGD--------QCNFQSPGTHPINVKTEATTSQHGHP-------------------------------------------------KFQYNNNNNNHHLVS-------------SSRGHQPVVHQLQ------HNLDL--------------------------------------------------------------QNDD-HSLSSN-EVE---------AIKAKIIAHPQYSNLVE------AYMDCQR---------------------------------VGAPS-DVVPRLSVARQE--FEARQ--R---SSGTSR-------------ETS---KD-P--EL------DQFM---------EAYYDMLVKYREELTRP----IQ----EAMDFMRRIET--------------------------------------------QLNMLGN------NNNAPPLRIFSP--------------------------------------------------------SEDKCEG--IGS-SE-DEQEN---SGGETEVPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSS--LK---QELSKKKKK--GKLPKEARQKLL------SWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLH-PQN-AALYM----------D---GHYT-GDVH--YRL---------GP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [398]
'gi|3023974|sp|Q41330|KN1 LYCES Homeotic protein knotted-1 (TKN1) >gi|1256575|gb|AAC49251.1| Knotted 1 (TKn1) >gi|1588258|prf||2'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MENNNYNNHVSGE----------NSGGQR--GHFFYGGNQV-------------------LGGA-APIYGR------GGDCYDPM----------------------------IVKTEGGGSTSHHNH-------------------------------------------------TFHYPSIIRN-H----------------------------H------HDSTE--------------------------------------------------------------TSGG-GAGAGE-VIE---------ALKAKIIAHPQCSNLLD------AYMDCQK---------------------------------VGAPP-EVAARLSAVRQE--FEARQ--R---RSLTDR-------------DVS---KD-P--EL------DQFM---------EAYYDMLVKYREELTRP----LQ----EAMEFMQKIEA--------------------------------------------QLNMLGN----------APVRIFNS---------------------------------------------------------EDKCEG--VGS-SE-EDQDN---SGGETELPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSS--LK---QELSKKKKK--GKLPKDARQKLI------TWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLH-PQSAAALYM----------E---GHYM-GEGP--FRL---------GQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [355]
'gi|33333546|gb|AAQ11889.1| knotted 2 [Nicotiana tabacum]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-------------------LSSPNSSIYGRTSGGGGGGDCYDQS----------------------QAVVHPIVKTEGGSSISHHHH-------------------------------------------------TFQYPSIIRSGY----------------------------H------HQTVQ--------------------------------------------------------------NHHE-SESSGS-EVD---------ALKAKIIAHPQCSNLLD------AYMDCQK---------------------------------VGAPP-EVVARLSAVRQE--FEVRQ--R---DSSTDR-------------DVS---KD-P--EL------DQFM---------EAYYDMLVKYREELTRP----LH----EAMDFMRKIET--------------------------------------------QLNMLGN----------GPVRIFNS---------------------------------------------------------EDKCEG--VGS-SE-EEQDN---SGGETEIPE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSS--LK---QELSKKKKK--GKLPKDARQKLL------SWWELHY-KWPYPS------------------ESEKVALAETTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMV-GLH-PQNAAALYM----------E---GHYM-GEGP--FRL---------GQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [341]
'gi|33333548|gb|AAQ11890.1| knotted 3 [Nicotiana tabacum]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIPL-------------------LASPNSSIYGRSS--GGGGDCYDQS----------------------QAVVHPIVKTEGGS--TSHHH-------------------------------------------------TFQYPSIIRSGY----------------------------H------HLTVQ--------------------------------------------------------------NHHE-SESSGS-EVD---------ALKAKIIAHPQCSNLLD------AYMDCQK---------------------------------VGAPP-EVVARLSAVRQE--FEVRQ--R---DSSTDR-------------NIA---KD-P--EL------DQFM---------EAYYDMLVKYREELTRP----LH----EAMDFMRKIET--------------------------------------------QLNMLGN----------GPVRIFNS---------------------------------------------------------EDNCEG--VGS-SE-EEQDN---SGGETEIPQ--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSS--LK---QELSKKKKK--GKLPKDARQKLL------SWWELHY-KWPYPS------------------ESEKVALAETTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLH-PQNAAALYM----------E---GHYM-GEGP--FRL---------GQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [340]
'gi|20977646|gb|AAM28232.1| knotted-1-like protein 2 [Helianthus annuus]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDYLGQNSSSSNTGTTSTTFLYGSGGVAPDTSCLYGRGGNESDPG--------------HGGFHHPDQYHHPMVKIETEKFHN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YPPS-MVNFHN-EDE---------ALKAKIISHPHYSNLLQ------AYMDCQK---------------------------------VGAPP-EVVGRLTAVRQE--YEARQ--R---ANLGCR-------------ENY---KD-P--EL------DQFM---------EAYYDMLIKYKEELTRP----IQ----EAMEFMRRIES--------------------------------------------QLSTLTISSSSSSSPAGRIFISP----------------------------------------------------------DESKCEV--IGS-SD-EEQENT--SGGETEVAE--ID--------------------PR-AEDREL-KNHLL-----------RKYS----GYLSS--LK---QELSKKKKK--GKLPKEARQKLL------SWWELHY-KWPYPS------------------ESEKVALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-GLH-PQNVATA------------LYMGDHHYMGDGPYRLGP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [358]
'gi|50918407|ref|XP 469600.1| homeobox 1 protein OSH1 [Oryza sativa (japonica cultivar-group)] >gi|41469276|gb|AAS07158.1| homeo'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEISHHFGVVGAS----GVHGG-----------------------------------------HQHQHHHHPWGSS-LSAIVAPPPPPQLQQQ--------QTQAGGMAHTPLTLNTAA---------------------------------------------------------AAVGNPVLQLAN-GS-------------LLDAC-GKAK----------------------------------------------------------------------------EASA-SASYAA-DVE---------AIKAKIISHPHYSSLLA------AYLDCQK---------------------------------VGAPP-EVAARLTAVAQD--LELRQ--R---TALGVL-------------GAA---TE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNTLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKDARQQLL------NWWELHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS--DEMQFVMMD-GYH-PTNAAAFYMD-------------GHFINDGGLYRLG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [361]
'gi|1171924|sp|P46609|OSH1 ORYSA Homeobox protein OSH1 >gi|540536|dbj|BAA03959.1| homeobox protein [Oryza sativa (japonica culti'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEISHHFGVVGAS----GVHGG-----------------------------------------HQHQHHHHPWGSS-LSAIVAPPPPPQLQQQ--------QTQAGGMAHTPLTLNTAA---------------------------------------------------------AAVGNPVLQLAN-GS-------------LLDAC-GKAK----------------------------------------------------------------------------EASA-SASYAP-DVE---------AIKAKIISHPHYSSLLA------AYLDCQK---------------------------------VGAPP-EVAARLTAVAQD--LELRQ--R---TALGVL-------------GAA---TE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNTLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKDARQQLL------NWWELHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS--DEMQFVMMD-GYH-PTNAAAFYMD-------------GHFINDGGLYRLG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [361]
'gi|3024577|sp|Q41853|RSH1 MAIZE Homeobox protein rough sheath 1 >gi|1008879|gb|AAA86287.1| RS1 gene product'                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDQ-SFGNLGAGA----------GSSS----GGSNSKA-AA-------------------TAVSSSSFLQL-PLST---AS------------P--------AYYGAPLALLHH-AAAAPSSSQQHQQ-------------------------------------------------QQHH-------H----------------------------H------YARH------------------------------------------------------------------G-AEMSAA-EAE---------AIKAKIVAHPQYSALLA------AYLDCQK---------------------------------VGAPP-DVLERLTAMAAK--LDASA---------AGR-------------HEP---RD-P--EL------DQFM---------EAYCNMLVKYREELTRP----ID----EAMEFLKRVEA--------------------------------------------QLDCISG------GGGSSSARLSLA--------------------------------------------------------DGK-SEG--VGS-SE-DDMDP---NGRENDPPE--ID--------------------PR-AEDKEL-KYQLL-----------KKYS----GYLSS--LR---QEFSKKKKK--GKLPKEARQKLL------HWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS--EDMPFVMME-GFH-PQNAAALYM----------D---GPFM-RDGM--YRL---------GS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [351]
'gi|57157677|dbj|BAD83803.1| KN1 homeobox protein [Triticum aestivum] >gi|57157675|dbj|BAD83802.1| KN1 homeobox protein [Triticu'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEIGHHFG-LGATA-------------------------------------------------HGQHHSQLPWGSSPLSAVIAPPPQQQQQ-Q--------QQSAGYLAHSPLSLNTAPPSGSHGGG-------------------------------------------------SGCSNPVLQLAN-GS-------------LLEAC-AKAA----------------------------------------------------------------------------KEPS-SSSYAA-DVE---------AIKAKIISHPHYSSLLA------AYLDCQK---------------------------------VGAPP-EVLARLTAVAQD--LELRQ--R---TALGSL-------------GTA---TE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKDARQQLL------SWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS--DEMQFVMMD-AYH-PPNA-AFYMD-------------GHFVNDSGLYRFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [363]
'gi|57157673|dbj|BAD83801.1| KN1 homeobox protein [Triticum aestivum] >gi|6942297|gb|AAF32398.1| KNOTTED-1-like homeobox protein'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEIGHHFG-LGATA-------------------------------------------------HGQHHSQLPWGSSPLSAVIAPPP-QQQQ-Q--------QQSAGYLAHSPLSLNTAPPSGSHGGG-------------------------------------------------TGCSNPVLQLAN-GS-------------LLEAC-AKAA----------------------------------------------------------------------------KEPS-SSSYAA-DVE---------AIKAKIISHPHYSSLLA------AYLDCQK---------------------------------VGAPP-EVLARLTAVAQD--LELRQ--R---TALGSF-------------GTA---TE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKDARQQLL------SWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS--DEMQFVMMD-AYH-PPNA-AFYMD-------------GHFVNDSGLYRFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [362]
'gi|793847|emb|CAA58503.1| Knox3 [Hordeum vulgare] >gi|3024086|sp|Q43484|KNOX3 HORVU Homeobox protein KNOX3 (Hooded protein)'        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEIGHHFG-LGATA-------------------------------------------------HGQHHSQLPWGSSPLSAVISPPPQQQQQHQ--------QQSAGYLAHSPLSLNTAPPGVSHGGG-------------------------------------------------SGCSNPVLQLAN-GS-------------LLEAC-AKAA----------------------------------------------------------------------------KEPS-SSSYAA-DVE---------AIKAKIISHPHYSSLLA------AYLDCQK---------------------------------VGAPP-EVSARLTAVAQD--LELRQ--R---TALGGL-------------GTA---TE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--TGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKEARQQLL------SWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPT--DEMQFVMMD-AYH-PPNA-AFYMD-------------GHFVNDSGLYRFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [364]
'gi|50933957|ref|XP 476506.1| homeobox gene [Oryza sativa (japonica cultivar-group)] >gi|34395067|dbj|BAC84729.1| homeobox gene'     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDQ-SFGNLGGGG----------GAGG-------------S-------------------GKAAASSFLQL-PLSTAAAAT---------------------AYYGTPLALHQ--AAAAAGPSQYHGH-------------------------------------------------GHPHH---GGGH----------------------------H------HSKHG--------------------------------------------------------------GAGG-GEISAA-EAE---------SIKAKIMAHPQYSALLA------AYLDCQK---------------------------------VGAPP-EVLERLTATAAK--LDARP---------PGR-------------HDA---RD-P--EL------DQFM---------EAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAGGAH---GGGAGSARLLLA---------------------------------------------------------DGKSEC--VGS-SE-DDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KFQLL-----------KKYS----GYLSS--LR---QEFSKKKKK--GKLPKEARQKLL------HWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS--EDMPFVMME-GFH-PQNAAALYM----------D---GPFM-ADGM--YRL---------GS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [355]
'gi|2522484|gb|AAB81079.1| knotted class 1 homeodomain protein [Hordeum vulgare]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEIGHHFG-LGATA-------------------------------------------------HGQHHSQLPWGSSPLSAVISPPPQQQQQHQ--------QQSAGYLAHSPLSLNTAPPGVSHGGG-------------------------------------------------SGCSNPVLQLAN-GS-------------LLEAC-AKAA----------------------------------------------------------------------------KEPS-SSSYAA-DVE---------AIKAKIISHPHHSSLLA------AYLDCQK---------------------------------VGAPP-EVSARLTAVAQD--LELRQ--R---TALGGL-------------GTA---TE-P--EL------DQFM---------EAYHEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNSLSISVR-----------------------------------------------------------------------SLRNILS--TGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKEARQQLL------SWWEMHY-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPT--DEMQFVMMD-AYH-PPNA-AFYMD-------------GHFVNDSGLYRFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [364]
'gi|4887608|dbj|BAA77817.1| homeobox gene [Oryza sativa (japonica cultivar-group)]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDQ-SFGNLGGGG----------GAGG-------------S-------------------GKAAASSFLQL-PLSTAAAAT---------------------AYYGTPLALHQ--AAAAAGPSQYHGH-------------------------------------------------GHPHH---GGGH----------------------------H------HSKHG--------------------------------------------------------------GAGG-GEISAA-EAE---------SIKAKIMAHPQYSALLA------AYLDCQK---------------------------------VGAPP-EVLERLTATAAK--LDARP---------PGR-------------HDA---RD-P--EL------DQFM---------EAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAGGAH---GGGAGSARLLLA---------------------------------------------------------DGKSEC--VGS-SE-DDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KFQLL-----------KKYS----GYLSS--LR---QEFSKKKKK--GKLPKEARQKLL------HWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS--EDMPFVMME-GFP-PQNAAALYM----------D---GPFM-ADGM--YRL---------GS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [355]
'gi|2935575|gb|AAC32818.1| KNOX class homeodomain protein [Oryza sativa]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDQ-SFGNL-GGG----------GAGG-------------S-------------------GKAAASSFLQL-PLSTAAAAT---------------------AYYGTPLALHQ--AAAAAGPSQYHGH-------------------------------------------------GHPHH---GGGH----------------------------H------HSKHG--------------------------------------------------------------GAGG-GEISAA-EAE---------SIKAKIMAHPQYSALLA------AYLDCQK---------------------------------VGAPP-EVLERLTATAAK--LDARP---------PGR-------------HDA---RD-P--EL------DQFM---------EAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAGGGHGGSGGGAGSARLLLA---------------------------------------------------------DGKSEC--VGS-SE-DDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KFQLL-----------KKYS----GYLSS--LR---QEFSKKKKK--GKLPKEARQKLL------HWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS--EDMPFVMME-GFH-PQNAAALYM----------D---GPFM-ADGM--YRL---------GS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [357]
'gi|33333531|gb|AAQ11882.1| knotted 1 [Hordeum vulgare]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDRSSFGNLAAGG----------GGSS---------------------------------SSKSSPSFLQLQPLSTTTVAAGPGP------MGG--------TYYGTPLALHQG-AAAAGSSQSPYQ-----------------------------------------------------F-------H----------------------------H------HKSS------------------------------------------------------------------V-GEISQA-EAE---------AIKTKIMAHPQYTALLV------AYLDCQK---------------------------------VGAPP-DVLERLTAMAAK--LDAHT---------PGRL------------HEA---RD-P--EL------DQFM---------EAYCNMLAKYREELTRP----IE----EAMEFLKRVEA--------------------------------------------QLDSIT-------GGGHGSAPLSLA--------------------------------------------------------AGK-YEG--VGS-SE-DDMDA---SGRENEPPE--ID--------------------PR-AEDKDL-KYQLL-----------KKYS----GYLSS--LR---QEFSKKKKK--GKLPKEARQKLL------HWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS--EDMPFVMME-GFH-PQNAAALYM----------D---GQFM-ADGM--YRL---------GS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [349]
'gi|32351469|gb|AAP76320.1| homeobox transcription factor GNARLY1 [Zea mays]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDQ-NFGNLGTGA----------GSSGGC--GGSNSNSKAV-------------------AAVSSSSFLQL-PLSTAAAAS------------P--------AYYGAPLALLHHGTTAGPSSS---QQ-------------------------------------------------QQHQ-------S----------------------------P------YAKH------------------------------------------------------------------G-AEMSAA-EAD---------AIKAKIVAHPQYSALLA------AYLDCQK---------------------------------VGAPP-DLLERLTAMAAK--LDARP---------PGR-------------HGP---RD-P--EL------DQFM---------EAYCNMLVKYREELTRP----ID----EAMEFLKRVEA--------------------------------------------QLDSIAG------GGSSSSARLSLA--------------------------------------------------------DGKSSEG--AGS-SEDDDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KYQLL-----------KKYS----GYLSS--LR---QEFSKKKKK--GKLPKEARQKLL------HWWELHY-KWPYPS------------------ETEKIALAEATGLDQKQINNWFINQRKRHWKPS--EDMPFVMME-GFH-PQTAAALYL----------DG--GAFM-ADGMTTYRL---------GS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [360]
'gi|85543304|gb|ABC71532.1| KNOTTED1-like homeodomain protein [Pharus lappulaceus]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YGVLGAGA-------------------------------------------------STTTHHHHPWASS-LSAVVAPPPPLPPT--------------------PLTLTTTPT-----AT-------------------------------------------------TTTNNPVLQLAN-GN-------------LLDACGGKAK----------------------------------------------------------------------------DPSS-SSSYAA-DVE---------AIKAKIISHPHYSSLLA------AYLDCQK---------------------------------VGAPP-EVATRLTAVAHE--LEARQ--R---TALGGL-------------GAA---ME-P--EL------DQFM---------EAYHEMLVKYREELARP----LQ----EAMEFLRKVEL--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHQLL-----------KKYS----GYLST--LK---QELSKKKKK--GKLPKDARQQLL------NWWELHY-KWPYPS------------------ESQKMALAESTGLDLKQINNWFINQRKRHWKPS--DEMQFVMMD-GYH-PTNA-AFYMD-------------GHFINDSG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [336]
'gi|85543302|gb|ABC71531.1| KNOTTED1-like homeodomain protein [Leersia virginica]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-LGT----------SGHG---------GHHHH-------------------HQGHQQQQQQHHPWASS-HSAVVAPPPPQTQQ----------QSQAVTMAHSPLTLSTAAA-----AA-------------------------------------------------AAAGVPVLQLAN-GN-------------LMDACGGSGKAK---------EAS--------------------------------------------------------------ASAS-ASFAAV-NVE---------AIKAKIISHPHYSSLLA------AYLDCQK---------------------------------VGAPP-EVAARLAAVAQD--LELRQ--R---TALGGL-------------GAA---TE-P--EL------DQFM---------EAYQEMLVKYREELTRP----LQ----EAMEFLRRVET--------------------------------------------QLNTLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--ID--------------------AH-GVDQEL-KHHLL-----------NKYS----GYLSS--LK---QELSKKKKK--GELPKDARQQLL------SWWELHC-KWPYPS------------------ESQKVALAESTGLDLKQINNWFINQRKRHWKPS--DEMQFVMMD-GYH-PTN--AFYM----------D---GHFINVSG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [360]
'gi|4099828|gb|AAD00692.1| homeobox transcription factor SKN2 [Picea mariana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKLFHSD---MEHLN-AAAAQASSSLYGVSMAEYGDVGVSSMMALMTQHEP----------------------------------------------------------------HERDSILTTSMPSSFSSFHGHAECLLSAAMFQAS----------------------QGDHKLKRQPEMD-QLVSEQAVMSDSSMPSV-------------KTEGCSSLRNQFEIRREQTGNCYTDQSSNAPVSPLVTSLVPQ-A---GG-EARMITSLE---------------------------ADSS-HFSGGN-EAE---------AIKAKILAHPQYPSLLG------AYIDCQK---------------------------------IGAPP-EVVARLDALTHE--YENQQ--H---RTTV---------------SIG---MD-P--EL------DQFM---------EAYCEMLTKYHEELTKP----FK----EAMSFLKKIEA--------------------------------------------QLNSLSKGTIRISPSAEND-----------------------------------------------------------------------EKTEGGASSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KDHLL-----------RKYS----GYLSS--LK---QEFMKKKKK--GKLPKDARQKLL------DWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS--EDMQLMAMD-GQSPHGATLYVERHLMTEGYHLDC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [442]
'gi|3928843|gb|AAC84001.1| homeobox protein [Picea abies]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEHLN-AAAAQASSSLYGVSMAEYGDVGVSSMMALMTQHEP----------------------------------------------------------------HERDSILTTSMPSSFSSFHGHAECLLSAAMFQAS----------------------QGDHKLKRQPEMD-QLVSEQAVMSDSSMPSV-------------KTEGCSSLRNQFEIRREQTGNCYTDQSSNAPVSPLVTSLVPQ-A---GG-EARMITSLE---------------------------ADSS-HFSGGK-EAE---------AIKAKILAHPQYPSLLG------AYIDCQK---------------------------------IGAPP-EVVARLDALTHE--YENQQ--H---RTTV---------------SIG---MD-P--EL------DQFM---------EAYCEMLTKYHEELTKP----FK----EAMSFLKKIEA--------------------------------------------QLNSLSKGTIRISPSAEND-----------------------------------------------------------------------EKTEGGASSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KDHLL-----------RKYS----GYLSS--LK---QEFMKKKKK--GKLPKDARQKLL------DWWTVHY-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS--EDMQLMAMD-GQSPHGATLYVERHLMTEGYHLDC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [434]
'gi|85543300|gb|ABC71530.1| KNOTTED1 homeodomain protein [Lithachne humilis]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-LGAS----SHGHG-----------------------------------------HHHHHHHHPWGSS-LSAVVAPPPQPPSA-----------GAGAGMPNTPLTLNTAPT-PGGNGG-------------------------------------------------GGCGNPVLQLAN-GS-------------LLDAC-AKAK----------------------------------------------------------------------------EPSAPSSSYAA-DVE---------AIKAKIISHPHYSSLLA------AYLDCQK---------------------------------VGAPP-EVAARLTALAQD--LELRQ--R---TSLSGL-------------GAA---TE-P--EL------DQFM---------EAYHEMLMKYREELTRP----LQ----EAMEFLRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------PLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------AH-GVDQEL-KHQLL-----------RKYS----GYLSS--LK---QELSKKKKK--GKLPKDARQQLL------NWWDMHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWKPS--DEMQFVMMD-GYH-PTN--ATWTA-------------ASSTTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [350]
'gi|32351475|gb|AAP76321.1| homeobox transcription factor KNOTTED1 [Zea mays] >gi|22351|emb|CAA43605.1| Kn1 [Zea mays] >gi|30267'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEITQHFG-VGASSHGHGHGQH-----------------------------------------HHHHHHHHPWASS-LSAVVAPLPPQPPS-----------------AGLPLTLNTVAA---TGNS-------------------------------------------------GGSGNPVLQLANGGG-------------LLDAC-VKAK----------------------------------------------------------------------------EPSS-SSPYAG-DVE---------AIKAKIISHPHYYSLLT------AYLECNK---------------------------------VGAPP-EVSARLTEIAQE--VEARQ--R---TALGGL-------------AAA---TE-P--EL------DQFM---------EAYHEMLVKFREELTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKEARQQLL------SWWDQHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWKPS--EEMHHLMMD-GYH-TTN--AFYMD-------------GHFINDGGLYRLG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [359]
'gi|85543290|gb|ABC71525.1| KNOTTED1 homeodomain protein [Sorghum bicolor]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-VGASSHSHGHGHG------------------------------------------QHHHHHHPWASS-LSAVVAPPPQQPPT-----------------AGLPLTLNTVAA---TGNS-------------------------------------------------GASGNPVLQLANGGS-------------LLDAC-VNVKAKG-------------------------------------------------------------------------EPSS-SSPYAG-DLE---------AIKAKIISHPHYYSLLA------AYLECKK---------------------------------VGAPP-DVSARLTAMAQE--LEARQ--R---TALSGL-------------GAA---TE-P--EL------DQFM---------EAYHEMLVKFKEELTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------VH-GVDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKMKK--GKLPREARQQHL------SWWDLHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWKPS--EEMHHLMMD-GYY-TN---TFFMD-------------GHFINDGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [348]
'gi|85543296|gb|ABC71528.1| KNOTTED1 homeodomain protein [Setaria italica]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-VGASG---GHGHV-----------------------------------------QDHLHHHHPWGSS-LSAVVAPPPQTPPS-----------------AGLPLTLNTAAT---GNSG-------------------------------------------------GAGGNPVLQLANGGG-------------LLDAC-VKAK----------------------------------------------------------------------------EPSS-SSPYAG-DVD---------AIRAKIISHPHYYSLLA------AYLECQK---------------------------------VGAPP-EVSARLTAMAQE--LEARQ--R---TALGGL-------------GAA---TE-P--EL------DQFM---------EAYHEMLVKFREELTRP----LQ----EAMEFMRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETEIPE--VD--------------------AH-GEDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GKLPKEARQHLL------SWRDLHY-KWPYPS------------------ETQKVALAESTGLDLKQIINWFINQRKRHWKPS--EEMHHLMMD-GYH-TTG--AFYMD-------------GHFINDSG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [344]
'gi|85543298|gb|ABC71529.1| KNOTTED1 homeodomain protein [Chasmanthium latifolium]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FG-VGA------SGHS-----------------------------------------QQQQQHHHPWVSA-LSAVVA----PAPS-----------------AGLPLTLNTAAT------G-------------------------------------------------SSGGNPVLQLANGGS-------------LLDAC-VKAK----------------------------------------------------------------------------ELSS-SSPYAG-DVD---------AIKAKIISHPHYYSLLA------AYLECQK---------------------------------VGAPP-EVSARLTAMAQE--LEARQ--R---TAFGGL-------------GNA---TE-P--EL------DQFM---------EAYHEMLVKFREELTRP----LQ----EALEFMRRVES--------------------------------------------QLNSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------AH-GVDQEL-KHHLL-----------KKYS----GYLSS--LK---QELSKKKKK--GTLPKEARQQLL------SWWDLHY-KWPYPS------------------ETQKVALAESTGLNLKQINNWFINQRKRHWKPS--EEMHHLMMD-GYH-TTN--AFYMD-------------GTSSTTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [334]
'gi|85543292|gb|ABC71526.1| KNOTTED1 homeodomain protein [Panicum miliaceum]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YG-LGAS----GHGHG-----------------------------------------QHHHYHHHPWGSS-LSAVVAPPPQPPPS-----------------AVLPLTLNTAATLNSGANG-------------------------------------------------GAGGNPVLQLAHGGS-------------LLDAC-IKAK----------------------------------------------------------------------------EPSS-SSPYAG-DVG---------AIKAKIISHPHYHSLLA------AYLECQK---------------------------------VGAPP-EVSARLTAMAQE--LEARQ--R---TALGGL-------------GAA---TE-P--EL------DQFM---------EAYHEMLVKFREELTRP----LQ----EAMEFMRRVES--------------------------------------------QLSSLSISGR-----------------------------------------------------------------------SLRNILS--SGS-SE-EDQEG---SGGETELPE--VD--------------------AH-GVDQEL-KHHLL-----------KMYS----GYLSS--LK---QELSKKKKK--GKLPKEARQQLL------GWWDLHY-KWPYPS------------------ETQKVALAESTGLDLKQINNWFINQRKRHWKPS--EEMHHLMMD-GYH-TTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [334]
'gi|4099826|gb|AAD00691.1| homeobox transcription factor SKN1 [Picea mariana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEHLN-TAAAQASSSLYGVGMAEYGDAGVSSMMALITQHEP----------------------------------------------------------------HDSESIMSTRMPSSFSSFHGHADCLLSAAMFQAS----------------------QGDHKLKRQPGMD-QLVSEQAVMSDSSMPSV-------------KTEVCSGLRNQFEFHREQTGNCYTDQSPNTPVNPLVTSLASQ-A---RG-EAQMIPSLD---------------------------ANSP-HFNVDN-EEY---------AIKSKILAHPQYPSLLG------AYIDCQK---------------------------------IGAPP-EAVARLDALTHE--YQNQQ--R---R-TV---------------SIG---MD-P--EL------DQFM---------EAYCEILTKYHEELAKP----FK----EAMTFLMKIEA--------------------------------------------QFNSLGKGTIRISPPAEND-----------------------------------------------------------------------EKTEGGGSSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KDHLL-----------RRYS----GYLSS--LK---QEFMKKKKK--GKLPKDARQKLL------DWWSLHD-KWPYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS--EDMHFMVMN-SHSPHSAALYVERHLMTEGYHLDC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [433]
'gi|26023939|gb|AAN77691.1| KNOTTED1-like homeodomain protein 3 [Picea abies]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEHLN-TAAAQASSSLYGVGMAEYGDAGVSSMMALITQHEP----------------------------------------------------------------HDSESIMSTRMPSSFSSFHGHADCLLSAAMFQAS----------------------QGDHKLKRQPGMD-QLVSEQAGMSDSSMPSV-------------KTEVGSGLRNQLEFHREQTGNGYTDQSSNTPVNPLVTSLASQ-A---RG-EAQMIPSWD---------------------------ANSP-HFNVDN-EEY---------AIKSKILAHPQYPSLLG------AYIDCQK---------------------------------IGAPP-EAVARLDALTRE--YQNQQ--R---R-TV---------------SIG---MD-P--EL------DQFM---------EAYCEILTKYHEELAKP----FK----EAMTFLMKIEA--------------------------------------------QFNSLGKGTIRISPPAEND-----------------------------------------------------------------------KKTEGGGSSEEVEDGSGGETDFQE--VD--------------------HHAVEDREL-KDHLL-----------RRYS----GYLSS--LK---QEFMKKKKK--GKLPKDARQKLL------DWWSLHD-KWSYPS------------------ETEKIALAECTGLDQKQINNWFINQRKRHWKPS--EDMHFMVMN-SHSPHSAALYVERHLMTEGYHLDC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [433]
'gi|28564574|dbj|BAC57683.1| KNOX class homeodomain protein [Oryza sativa (japonica cultivar-group)]'                                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDQ-SFGNLGGGG----------GAGG-------------S-------------------GKAAASSFLQL-PLSTAAAAT---------------------AYYGTPLALHQ--AAAAAGPSQYHGH-------------------------------------------------GHPHH---GGGH----------------------------H------HSKHG--------------------------------------------------------------GAGG-GEISAA-EAE---------SIKAKIMAHPQYSALLA------AYLDCQK---------------------------------VGAPP-EVLERLTATAAK--LDARP---------PGR-------------HDA---RD-P--EL------DQFM---------EAYCNMLAKYREELTRP----ID----EAMEFLKRVES--------------------------------------------QLDTIAGGAH---GGGAGSARLLLAGKSTNHPSPSSCSRLRFYFYLHTCSFCFFSSAAAAAADDDDLVVGGDGGGGGGGGLPHCKSEC--VGS-SE-DDMDP---SGRENEPPE--ID--------------------PR-AEDKEL-KFQLL-----------KKYS----GYLSS--LR---QEFSKKKKK--GKLPKEARQKLL------HWWELHY-KWPYPS------------------ETEKIALAESTGLDQKQINNWFINQRKRHWKPS--EDMPFVMME-GFH-PQNAAALYM----------D---GPFM-ADGM--YRL---------GS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [412]
'gi|55669507|gb|AAV54621.1| homeobox transcription factor KN4 [Picea mariana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDMNMNIGGAATFYGVNMNEYGDTGVGSMMALMTEQE----------------------PGNESIMSTMTMTIPSSAFSSYSHA---------------GQVEGLLSAAAATMFNQGGHHHHQKHLV--------------------------------------GGHFPPEQLVMNEQAAVISDSSLSSV---------------------------KTEVCSNQLEFHRKTSGGGRSCCPQPSLVV----------------RAPQQQQQHHHHQEASRMVTSLEVDIDSAC-SSNPND-SID---------TLKTKIACHPHYPQLLA------AYMDCQK---------------------------------IGAPP-EVVTVLDEISQENQLGRHL----------------------------------ATMDIGVDPELDQFM---------EAYCQMLIKYHLELSKP----FK----EARTFLNKMET--------------------------------------------QLNCLSKGAIRSFPSGYCDEREDG------------------------------------------------------------------GGS-SE-EEFSC-----GEIEVHE--VD--------------------PR-AEDREL-KDQLL-----------RKYS----GYFSS--LK---QEFLKKKKK--GKLPKEARQKLL------EWWNVHY-KWPYPS------------------ETDKVSLAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-SLN-PHGASF-------------------------YMDGADC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [438]
'gi|7940290|gb|AAF70849.1| F2401.9 [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESGSNSTS----------------------CPMAFAGDNS-------------------DGPMCPMMMMMPPIMTSH-QHHGHDHQHQ-QQEHDGYAYQSHHQQSSSLFLQSLAPP-QGTKNKVASS--------------------------------------------SSPSSCAPAYSLMEIHH-----------------------------------NEIVA--------------------------------------------------------------GGIN-PCSSSS-SSA---------SVKAKIMAHPHYHRLLA------AYVNCQK---------------------------------VGAPP-EVVARLEEACSS--AAAAA--A---SMGPTG-------------CLG---ED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSLSSPSSFS----------------------------------------------------------------------AIDRNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-ATH-PH----------------------HYFMD--NVLGNPFPMDHISSTML--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [377]
'gi|15220767|ref|NP 176426.1| STM (SHOOT MERISTEMLESS); transcription factor [Arabidopsis thaliana] >gi|20141647|sp|Q38874|STM A'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESGSNSTS----------------------CPMAFAGDNS-------------------DGPMCPMMMMMPPIMTSH-QHHGHDHQHQ-QQEHDGYAYQSHHQQSSSLFLQSLAPP-QGTKNKVASS--------------------------------------------SSPSSCAPAYSLMEIHH-----------------------------------NEIVA--------------------------------------------------------------GGIN-PCSSSS-SSA---------SVKAKIMAHPHYHRLLA------AYVNCQK---------------------------------VGAPP-EVVARLEEACSS--AAAAA--A---SMGPTG-------------CLG---ED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSLSSPSSFSGY-----------------------------------------------------------------GETAIDRNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-ATH-PH----------------------HYFMD--NVLGNPFPMDHISSTML--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [382]
'gi|1167916|gb|AAC49148.1| class I knotted-like homeodomain containing protein; Method: conceptual translation supplied by autho'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESGSNSTS----------------------CPMAFAGDNS-------------------DGPMCPMMMMMPPIMTSH-QHHGHDHQHQ-QQEHDGYAYQSHHQQSSSLFLQSLAPP-QGTKNKVASS--------------------------------------------SSPSSCAPAYSLMEIHH-----------------------------------NEIVA--------------------------------------------------------------GGIN-PCSSFS-SSA---------SVKAKIMAHPHYHRLLA------AYVNCQK---------------------------------VGAPP-EVVARLEEACSS--AAAAA--A---SMGPTG-------------CLG---ED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSLSSPSSFSGY-----------------------------------------------------------------GETAIDRNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-ATH-PH----------------------HYFMD--NVLDNPFPMDHISSTML--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [382]
'gi|19424064|gb|AAL87330.1| putative homeobox protein [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QSHHQQSSSLFLQSLAPP-QGTKNKVASS--------------------------------------------SSPSSCAPAYSLMEIHH-----------------------------------NEIVA--------------------------------------------------------------GGIN-PCSSSS-SSA---------SVKAKIMAHPHYHRLLA------AYVNCQK---------------------------------VGAPP-EVVARLEEACSS--AAAAA--A---SMGPTG-------------CLG---ED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQRVEC--------------------------------------------QFKSLSLSSPSSFSGY-----------------------------------------------------------------GETAIDRNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-ATH-PH----------------------HYFMD--NVLGNPFPMDHISSTML--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [326]
'gi|20977642|gb|AAM28231.1| knotted-1-like protein 1 [Helianthus annuus]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESDGDGGGTSSC---------------------LMSFGDT--------------------------------------TNNINNNSSNN------------NNSNNNIGSLCLPPNPPGAYNTTTNN------------------------------------------NNLIFSDHHPSAMMLEDNN-----------------ININDGVGLAFMN------------------------------------------------------------------------------------PSS---------SVKAKIMSHPHYPRLLS------AYLNCQK---------------------------------IGAPP-EVVERLEEACRA--SVVAA--M---SSCSGGAGTSDGSGGGMNMIIG---QD-P--AL------DQFM---------EAYCEMLIKYEQELSKP----FK----EAMLFLSRIES--------------------------------------------QFKAISISTSDSAGG-------------------------------------------------------------------EGGMDK--NGS-SE-EEVDV---NNN-----L--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWTRHY-KWPYPS------------------EAQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAH-P-----------------------HYFMENMNILGNP-YPMDVSLL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [362]
'gi|55276120|gb|AAV49801.1| homeobox transcription factor KN2 [Populus balsamifera subsp. trichocarpa x Populus deltoides]'          ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGGGGDGGSSTT-------------------SCMMAFGDN-------------------SNGLCPMMMMTPLMSSSSSAHHQHPHHHHRANEG--------DSSISNTLFLPLPPTNNQGHNRIHSN------------------------------------------------ASGSSSMIIDDHNRNH-------------NNNTVTATGCYFM-------------------------------------------------------------------------------DNNDG-SSS---------SVKAKIMAHPHYHRLLA------AYANCQK---------------------------------VGAPP-EVVARLEEACAS--AASIA--P---ANTG---------------CIG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----LK----EAMLFLQRVEC--------------------------------------------QFKALTLSSPISG--------------------------------------------------------------------CGDGNDR--NVS-SE-EEVDV---NNN-----F--ID--------------------PQ-AEDQEL-KGQLL-----------RRYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AGH-P-----------------------HYYMD--NVLGNP-FPMDISPTLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [373]
'gi|3462612|gb|AAC33008.1| knotted1-like class I homeodomain protein [Pisum sativum] >gi|3426304|gb|AAC32262.1| Knox class 1 pro'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGSSNGSS----------------------SYVMAAFGEN-------------------SGGLCPPMMMMPLVTSSH---HHPINSNNN------------NANNTSCLFLPIPNST-NNNNHYTNN-------------------------------------------------NNSNNTMLQNNH--H-------------TTQNTPGLGYYFM---------DN--------------------------------------------------------------HNNN-GASSSS-SSS---------AVKAKIMAHPHYHRLLE------AYINCQK---------------------------------VGAPS-EVVTRLEEACAS--AVRMG--G---DAVGSG-------------CIG---ED-P--AL------DQFM---------EAYCEMLIKYEQELSKP----LK----EAMLFLQRIEV--------------------------------------------QFKNLTVSSSSDNIA------------------------------------------------------------------CNEGGDR--NGS-SEEDQVDL---YNN-----M--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------EWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-PTH-P-----------------------HYYMD--NVLTNS-FPMDLSNTML--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [371]
'gi|1170312|sp|P46608|HSBH1 SOYBN Homeobox protein SBH1 >gi|485406|gb|AAA20882.1| SBH1'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGGSSSSNGTSY---------------------LLAFGENN------------------SGGLCPMTMM--PLVTSHHAGHHPINPSNN------------NNVNTNCLFIPNCSNSTGTPSIMLHN------------------------------------------------------NHNNNKTDDD-------------DNNNNTGLGYYFMESDHHHHHHGN--------------------------------------------------------------NNNN-GSSSSS-SSS---------AVKAKIMAHPHYHRLLA------AYVNCQK---------------------------------VGAPP-EVVARLEEACAS--AATMAGGD---AAAGSS-------------CIG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----LK----EAMLFLQRIEC--------------------------------------------QFKNLTISSSDFA--------------------------------------------------------------------SNEGGDR--NGS-SE-EDVDL---HN------M--ID--------------------PQ-AEDRDL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------EWWNRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-PSH-P-----------------------HYYMD--NVLGNP-FPMDLSHPML--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [379]
'gi|54042995|gb|AAV28488.1| homeodomain protein ARBORKNOX1 [Populus alba x Populus tremula]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME--GGDGGSSTT-------------------SCMMAFGDN-------------------SNGLCP-MMMTPLMSSSSA------HHHHRANEG--------DSSVSNTLFLPLPPTNNQGHNRIHSN------------------------------------------------ASGSSSMIIDDHN----------------HNNTVTATGCYFM-------------------------------------------------------------------------------DNNDG-SSS---------SVKAKIMAHPHYHRLLA------AYANCQK---------------------------------VGAPP-EVVARLEEACAS--AASMA--P---ANTG---------------CIG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----LK----EAMLFLQRVEC--------------------------------------------QFKALTVSSPISG--------------------------------------------------------------------CGDGNDR--NVS-SE-EEVDV---NNN-----F--ID--------------------PQ-AEDQEL-KGQLL-----------RRYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AGH-P-----------------------HYYMD--NVLGNP-FPMDISPTLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [361]
'gi|11037020|gb|AAG27464.1| knotted class I homeodomain KNOX [Medicago truncatula]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGSSNGSC----------------------SYVMGAFGEN-------------------SGGLCPPMMMMPLVTSSHHNAHHPINSNNNNNNNN----NNTNANNTTGLFLPIPNSTNNNNNHYTNC------------------------------------------------NNNTSSIMLQNNH------------------QNTPGLGYYFM---------DN--------------------------------------------------------------INNH-GSSSSS-SSS---------SVKSKIMAHPHYHRLLE------AYINCQK---------------------------------VGAPS-EVVARLEEACAT--AVRMG--G---DAVGSG-------------CLG---ED-P--AL------DQFM---------EAYCEMLIKYEQELSKP----LK----EAMLFLQRIEV--------------------------------------------QFKNLTVSSSSDNIA------------------------------------------------------------------CSEGGDR--NGS-SEEDHVDL---YNN-----M--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------EWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-PSH-P-----------------------HYYMD--NVLTNS-YPMDLSNTML--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [381]
'gi|7340350|gb|AAF23753.2| shoot meristemless [Brassica oleracea] >gi|20139943|sp|Q9M6D9|STM BRAOL Homeobox protein Shootmeriste'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESGSNSTS----------------------CPMAFAGDNS-------------------DGPMCPMMMMMMPVITSHQQHHGHDQQHQHQQQHDGYAYQSHHQHSSLLFLQSLTPPSQEAKNKVRSS--------------------------------------------CSPSSGAPAYSFMEINH----------------------------------QNELLA--------------------------------------------------------------GGLQ---SPVL-SSL---------LVKAKIMAHPHYHRLLL------AYVNCQK---------------------------------VGAPP-EVQARLEETCSS--AAAAA--A---SMGPTG-------------SLG---ED-P--GL------DQFM---------EAYCEMLVKYEQELSKP----FK----EAMVFLQHVEC--------------------------------------------QFKSLSLSSPSSL-GY-----------------------------------------------------------------GEAAIERNNNGS-SE-EEVDM---NNE-----F--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------EQQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-ATH-PL----------------------HYFMG--NVLGNPFPIDHISGTML--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [383]
'gi|6016221|sp|O22299|LET6 LYCES Homeobox protein knotted-1-like LET6 >gi|2529701|gb|AAC49917.1| class I knotted-like homeodomai'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGGSSGNTSTSC-------------------LMMMGYGDHENNNNNNGNGNGNGNGNV-TICAPPMMMMMPPPPPSLTNNNNA------------------ETSNNNILFLPFMDNN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNPQEDNNS-SSS---------SIKSKIMAHPHYHRLLT------AYLNCQK---------------------------------IGAPP-EVVARLEEICAT--SATMG--R---SSSSSGGG-----------IIG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLAPNSSHESA-----------------------------------------------------------------LGEAMDR--NGS-SD-EEVDV---NNS-----F--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLV------DWWLRHI-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAH-P-----------------------HYYMD--NVLANH-FPMDMTPSLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [355]
'gi|26185808|emb|CAD58394.1| putative knotted-1-like protein [Helianthus tuberosus]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESGGDGGGTSSC---------------------LMSFGDT--------------------------------------NNNINNSSSNN------------NNSNNNIGSLCLPPNPPGAYNTTTNN------------------------------------------NNLIFSDHHPSAMMLEDNN-----------------ININDGVGLAFMN------------------------------------------------------------------------------------PSS---------SVKAKIMSHPHYPRLLS------AYLNCQK---------------------------------IGAPP-EVVERLEEACRA--SVVAA--M---SSRSGGAGTSDGSGGGMNMIIG---QD-P--AL------DQFM---------EAYCEMLIKYEQELSKP----FK----EAMLFLSRMES--------------------------------------------QFKAITFSNSDSGCG-------------------------------------------------------------------EGGMDR--NGS-SE-EELDVDM-NNG-----M--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWTRHY-KWPYPS------------------EAQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAH-P-----------------------HYFID--NIFGNP-YPMDVSLL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [362]
'gi|3046821|dbj|BAA25546.1| homeobox gene [Nicotiana tabacum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGGGSSGNTSSC---------------------LMGYGDDNNNNNSGNA----------ALCPPP--MMMPPPPINNNNGESSNNIG--------------GNNNNNILFLPFMAN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNPHEDANCSSSS---------SIKSKIMAHPHYPRLLS------AYVNCQK---------------------------------IGAPP-EVVARLEEVCAT--SATIG--R---NSGG---------------IIG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLTSSSESVAA-----------------------------------------------------------------LGEAIDR--NGS-SE-EEVDV---NNG-----F--ID--------------------PQ-AEDQEL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWTRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAH-P-----------------------HYYMD--NVLGNP-FPMDITPTLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [342]
'gi|4098240|gb|AAD00251.1| knotted 2 protein [Lycopersicon esculentum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGGSSGNTSTSC-------------------LMMMGYGDHENNNNNNGNGNGNGNGNV-TICAPPMMMMMPPPPPSLTNNNNA------------------ETSSNNILFLPFMDN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNPQEDNNS-SSS---------SIKSKIMLNPHYHRLLT------AYLNCQK---------------------------------IGAPP-EVVARLEEICAT--SATMG--R---SSSSSGGG-----------IIG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLAPNSSHESA-----------------------------------------------------------------LGEAMDR--NGS-SD-EEVDV---NNS-----F--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLV------DWWLRHI-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAH-P-----------------------HYYMD--NVLANH-FPMDMTPSLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [354]
'gi|18389212|gb|AAL67665.1| invaginata [Antirrhinum majus]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGGGGSSS----------------------NSCMIGFGENTSS----------------NNGFCPMTMMMMPPPSMAS-----------------------SHPNGNTLFFPLPSTNNSHQGLNHRT---------------------------------------------------SASTMLEDQH----------------NNNTITSTGYYFM---------------------------------------------------------------------------------DGN-DND---------SVKAKIMAHPYYHKLLA------AYINCQK---------------------------------IGAPP-EVAVKLEEACAS--AATMG--R---NSVS---------------RIG---ED-P--AL------DQFM---------EAYCEMLSKYEQELSKP----FR----EAMLFLSRIEC--------------------------------------------QFKALTLSSSDSA--------------------------------------------------------------------CGEAMDR--HGS-SE-EEIDV---DNS-----L--ID--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------ESQKLALAEQTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAH-P----------------------GHYYMD--NVLGNP-FAMDILPTLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [351]
'gi|57116570|gb|AAW33773.1| STM1 protein [Streptocarpus dunnii]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSAGNVNMTSS---------------FKGANSYMGFGDN-------------------VNGLCPMMMMMPANDP--------------------------NGDCSQPLFLPLPAANQQGINRNSSS-------------------------------------------------------------------AAACGGSMMPEHQSNTSTGYYFM------------------------------------------------------------------------------EGDGVA-GGG---------SVKSKIMAHPHYPRLLA------AYVNCQK---------------------------------IGAPP-EVVAKLEEACAS--TITIG------GRNERS-------------CVG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMLFLSRIEC--------------------------------------------QFKALTLSHSSDSGAC-----------------------------------------------------------------GEAVMER--NGS-SE-EEFDV---NNS-----F--ID--------------------PQ-AEDREL-KGQLL-----------RRYS----GYLGN--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-ATH-P-----------------------HYYMD--NFIGTP-FPMDISPSFL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [356]
'gi|57116572|gb|AAW33774.1| STM1 protein [Streptocarpus rexii]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGSAGNMNMTSS---------------FKGANSYLGFGDN-------------------VNGFCPMMMMMPANNP--------------------------NGDCSQPIFQPLPAANQQGINRNSSS-------------------------------------------------------------------AAACGGSMMPEHQSNTSTGYYFM------------------------------------------------------------------------------EGDGDA-GGG---------SVKSKIMAHPHYPRLLA------AYVNCQK---------------------------------IGAPP-EVVAKLEEACAS--TITIG------GRNERS-------------CVG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMLFLSRIEC--------------------------------------------QFKALTLSHSSDSGAC-----------------------------------------------------------------GEAVLER--NGS-SE-EEFDV---NNS-----F--ID--------------------PQ-AEDREL-KGQLL-----------RRYS----GYLGN--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-ATH-P-----------------------HYYMD--NFMGTP-FPMDISPSFL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [358]
'gi|22074785|gb|AAM47027.1| shootmeristemless-like [Petunia x hybrida]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGGGNSSGNNTS--------------------SLMAYGDHENNNN--------------AICPPMMMMMMPPPPLSITNTSNNGESS--------------SNNNNNILFLPFMEN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSNTIHEDGNS-CSS---------NIKAKIMAHPHYPRLLA------AYINCQK---------------------------------IGAPP-EVVARLEEVCAT--SAHMG--R---NGGGGGGGGNN--------VIG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLASTSESVAA-----------------------------------------------------------------FGEAMDR--NGS-SE-EEVDV---NNS-----L--VD--------------------PQ-AEDREL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWTRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAH-P-----------------------HYYID--NVLGNP-FPMDMTPTLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [347]
'gi|7581979|emb|CAB88029.1| knotted1-like homeobox protein [Dendrobium grex Madame Thong-In]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDEMYSIPPDSTFAAADDLHGLIAASGYGA-AAAAAA-AEE---------EMKARIASHPRYPHLLE------AYIDCQK---------------------------------VGAPP-DIASLLEEIRRE--NAGGE-----RLASSSV-------------ILG---SD-P--EL------DEFM---------EMYCDVLVKYRRDLERP----FD----EATAFLNTMEV--------------------------------------------QLSDLCKPTCRAALGPYVS--------------------DEA------------------------------------------------VGS-S-DEELSG-GEGE-APESHL--------------------------KGEERDL-KEKLL-----------RKYS----GYLSS--LK---QEFSKKKKK--GKLPKEARQILF------EWWTAHY-KWPYPT------------------EADKIALAEATGLDQKQINNWFINQRKRHWKPA--ENMHFSVMD-NSS------------------------TSSLFADD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [286]
'gi|50918411|ref|XP 469602.1| knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|41469271|gb|AAS07153.1'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGG--------------ARQAVAPATRDGGDGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------AAGV-LDD---------PVKARIVSHPRYHRLLA------AFLDCHK---------------------------------VGCPA-EAAEEIAAAARV--REARQ--R---AAAAASRMP----------PAP---ED-P--EL------DQFM---------EDYCKLLVECKEELSRP----LQ----EAEEFLRTVES----------------------------------------------ELNSINSGPPLTALISESKAGLDSSDDD----------------------------------------------------------------EHEDGSGMEMMEAAEDEDLG--II--------------------DPRSDDKAL-KRHLL-----------RKYS----GYLGG--LR---KELSKKRKK--GKLPKEARQKLL------TWWELHY-RWPNPS------------------EMEKIALAESTGLEQKQINNCFINQRKRHWKPT--EEMEFAVME-AYHHQSTDAAAAFYVDVDARLVGATAAAPASAVYTARPDHGVWRA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [365]
'gi|27413549|gb|AAO11694.1| Knotted-1-like homeobox protein H1 [Nicotiana tabacum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGGGSSGNTS-C---------------------LMGYNGDDNNNNSGNA----------ALCPPPMMMMMMPPPINNNNAESSNNIG--------------GNNNNNILFLPFMDN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNNNPHEDANC-SST---------SIKSKIMAHPHYPRLLS------AYVNCQK---------------------------------IGAPP-EVVARLEEVCAT--SATIG--R---NSGG---------------IIG---ED-P--AL------DQFM---------EAYCEMLTKYEQELSKP----FK----EAMVFLSRIEC--------------------------------------------QFKALTLTSSSESVAA-----------------------------------------------------------------LGEAIDR--NGNGSS-EEVDV---NNG-----F--ID--------------------LQ-AEDQEL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------DWWTRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAH-P-----------------------HYYMD--NVLGNP-FPMDITPTLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [343]
'gi|57116574|gb|AAW33775.1| STM1 protein [Streptocarpus saxorum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGSAGNLNLNSY----------------RGANSFMGFGDN-------------------VNGFSPMMMMMHANDP--------------------------NGDCSQPIFLPLPAANHQGINRNTGG-----------------------------------------------------------------------GGGLTPEHHSNMSTGYYFM------------------------------------------------------------------------------EGDGDA-GGS---------SVKSKIIAHPHYPRLLA------AYVSCQK---------------------------------IGAPP-EVVAKLEEVCAS--ATSTG------CRNERS-------------CVG---ED-P--AL------DQFM---------EAYCGMLTKYEQELSKP----FK----DAMLFFSRFEC--------------------------------------------QFKALTLSHSADSGAC-----------------------------------------------------------------DEAVLEQ--NGS-SE-EEFDV---NNS-----F--ID--------------------PQ-AEDHEL-KGQLL-----------RKYS----GYLGN--LK---QEFMKKRKK--GKLPKEARQQLL------DWWSRHY-KWPYPS------------------ESQKLALAESTGLEQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAH-P-----------------------HYYMD--NIMATP-FPMDISSSFL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [353]
'gi|50917689|ref|XP 469241.1| putative KNOTTED-1-like homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|40538935|gb|'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPLLAPDSKAATSSPLCL---TLDNPTSTSTSPAVPSSAPPPAAALE--------------PSR-QSFHER-ETD---------AIKAKIMSHPLYPALLR------AFIDCQK---------------------------------VGAPP-EVVGRLSALAGE--LDSRA--E---DRY--LQ------------GQS---SD-P--EL------DEFM---------ETYIDMLVSYRQELTRP----IQ----EADQFFRNMEA--------------------------------------------QIDSFTLD--------------------------------------------------------------------------DNGSEG--GNS-SE-DEQEAGGGDMASAGLPE--IT--------------------SPCAEDKEL-KSHLL-----------NKYS----GYLSS--LW---RELSKKKKK--GKLPRDARQKLL------HWWQLHY-RWPYPS------------------ELEKAALAESTGLDAKQINNWFINQRKRHWKPTP-PAMEYRSLQPAGAASYGGASAGASTSGGGSAVVRGMEGQHFTGGGAYPRGDP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [337]
'gi|18389214|gb|AAL67666.1| hirzina [Antirrhinum majus]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGSGGGG--------------------------MMAFGENNNNNS--------------NNGFCPSNMMMPQLASNC------------------------EGGYSTTPFVPLVPFTNHHHHHQEMN-------------------------------------------RQRSTVVGGSSMVYEEGH-QN-------------NSNAITSTGYYFM-------------------------------------------------------------------------------DSTNC-DES---------SLKAKIMAHPHYHRLLA------AYVNCHK---------------------------------IGAPP-EVVSRLEEAAAA--MARHG----------TI-------------SVG---ED-P--GL------DQLM---------EAYSEMLSKYEQELSKP----FK----EAMLFLSRIES--------------------------------------------QFKALTVSAA-----------------------------------------------------------------------RGEAMFR--NGS-SE-EEIDV---NNS-----F--ID--------------------PQ-AEDIEL-KGQLL-----------RKYS----GYLGS--LK---QEFMKKRKK--GKLPKEARQQLL------EWWSRHY-KWPYPS------------------ESQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFVVMD-AAN-P-----------------------QYYME--NILGNP-FPMDISPALL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [353]
'gi|9295701|gb|AAF87007.1| F26F24.25 [Arabidopsis thaliana] >gi|15991300|dbj|BAB69678.1| homeodomain transcription factor KNAT6'     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNFHSA-GDYSDKSVLMMSPES---LMFPSDYQALL--------------------CSSAGENRVSDVFGSDELLSVAVSALSSEAASIAPE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-RNDDNV-SLT---------VIKAKIACHPSYPRLLQ------AYIDCQK---------------------------------VGAPP-EIACLLEEIQRE--SDVYK--Q---EVVPSS-------------CFG---AD-P--EL------DEFM---------ETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT---GVESARGVS--------------------EDG------------------------------------------------VIS-S-DEELSG-GDHEVAEDGRQ--------------------------RCEDRDL-KDRLL-----------RKFG----SRIST--LK---LEFSKKKKK--GKLPREARQALL------DWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWKPS--ENMPFAMMD-DSS------------------------GSFFTEE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [324]
'gi|42570557|ref|NP 850951.2| KNAT6; DNA binding / transcription factor [Arabidopsis thaliana] >gi|28393913|gb|AAO42364.1| putat'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--DGMYNFHSA-GDYSDKSVLMMSPES---LMFPSDYQALL--------------------CSSAGENRVSDVFGSDELLSVAVSALSSEAASIAPE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-RNDDNV-SLT---------VIKAKIACHPSYPRLLQ------AYIDCQK---------------------------------VGAPP-EIACLLEEIQRE--SDVYK--Q---EVVPSS-------------CFG---AD-P--EL------DEFM---------ETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT---GVESARGVS--------------------EDG------------------------------------------------VIS-S-DEELSG-GDHEVAEDGRQ--------------------------RCEDRDL-KDRLL-----------RKFG----SRIST--LK---LEFSKKKKK--GKLPREARQALL------DWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWKPS--ENMPFAMMD-DSS------------------------GSFFTEE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [327]
'gi|8778590|gb|AAF79598.1| F28C11.2 [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNFHSA-GDYSDKSVLMMSPES---LMFPSDYQALL--------------------CSSAGENRVSDVFGSDELLSVAVSALSSEAASIAPE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-RNDDNV-SLT---------VIKAKIACHPSYPRLLQ------AYIDCQK---------------------------------VGAPP-EIACLLEEIQRE--SDVYK--Q---EVVPSS-------------CFG---AD-P--EL------DEFM---------ETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT---GVESARGVSGGMSPHGDKTISPLLTNDNGEDG------------------------------------------------VIS-S-DEELSG-GDHEVAEDGRQ--------------------------RCEDRDL-KDRLL-----------RKFG----SRIST--LK---LEFSKKKKK--GKLPREARQALL------DWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWKPS--ENMPFAMMD-DSS------------------------GSFFTEE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [344]
'gi|11463937|dbj|BAB18582.1| CRKNOX1 [Ceratopteris richardii]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDYDGHMRASMSSNICNVMNYAEGQVGSMVA--------------LMTTDHGTEGEQNRNHNPQHTSQHEQPQNQSSHSRNDRRQQLRSLNQTTMSSSLPTSSLTYYNAAMVEPYLQSALLQST----------------------HTFNQSNNVETHPHIISALDQLETSVVVSAE-------------EEKPHIGIRPKPVQSAQFPSSIDCNYVLSSSGQSVLVSPGANST---THESQAAVASV-SR-------------------------DMEN-AHASAD-RSD---------VIRSKIMSHPTYPRLVM------AYVNCHK---------------------------------IGAPP-EVATSLEEISKK--YQSFR--S---SSPA---------------PTG---AD-P--EL------DNFM---------ETYCNVLQKYHDELMQP----YK----EAMTFFRKIEL--------------------------------------------QLNALSKGTVRLCHTGDDKADAN----------------------------------------------------------CNSGQHGLISGGSSGEEDAEEGDVSCGEVDFHEEMID--------------------PL-ADDQKV-KEQLL-----------RKYS----GYIYK--LK---QEFLKKKKK--GKLPKNAREKLL------DWWNQHY-KWPYPS------------------EAEKAALAETTGLDQKQINNWFINQRKRHWKPS--EDMQYVMVD-SPTAHHHHHVLHGHAHLTPHPLAPYAVMETMDAAAAAAAAVTMLPSLQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [512]
'gi|3327269|dbj|BAA31698.1| PKn1 [Ipomoea nil]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--DGMFGFHSTP-DYGSRA--LMSPEN----LMDCGYSYNGL--------------IS----PSAPDRI--PVFASDDPTATGSFPCSVVSEAASVAPDVYR-----------RGGGGGRREDA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGEK-EDDDDH-GIG---------LIKAKIASHPSYPKLLE------AYIDCQK---------------------------------VGAPP-EIASFLDEIRRE--NDLFK--H---DSRVST-------------CFG---DD-P--EL------DIFM---------ETYCDILVKYKSDLSRP----FD----EAKTFLNKIET--------------------------------------------QLSNLCK-----------D--------------------DGV------------------------------------------------VSS-D-DDEYSG-GEAE-EQDSAV--------------------------KGEDREL-KSRLL-----------QKYG----GHISS--LK---LEFSKKKKK--GKLPKDARQILL------EWWKGHY-RWPYPT------------------EDDKISLAELTGLDQKQINNWFINQRKRHWKPS--EHMQLAVMD-NLA------------------------GQFFTQD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [333]
'gi|22329749|ref|NP 173752.2| KNAT6; DNA binding / transcription factor [Arabidopsis thaliana] >gi|15991302|dbj|BAB69679.1| home'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNFHSA-GDYSDKSVLMMSPES---LMFPSDYQALL--------------------CSSAGENRVSDVFGSDELLSVAVSALSSEAASIAPE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-RNDDNV-SLT---------VIKAKIACHPSYPRLLQ------AYIDCQK-------------------------------KQVGAPP-EIACLLEEIQRE--SDVYK--Q---EVVPSS-------------CFG---AD-P--EL------DEFM---------ETYCDILVKYKSDLARP----FD----EATCFLNKIEM--------------------------------------------QLRNLCT---GVESARGVS--------------------EDG------------------------------------------------VIS-S-DEELSG-GDHEVAEDGRQ--------------------------RCEDRDL-KDRLL-----------RKFG----SRIST--LK---LEFSKKKKK--GKLPREARQALL------DWWNLHY-KWPYPT------------------EGDKIALADATGLDQKQINNWFINQRKRHWKPS--ENMPFAMMD-DSS------------------------GSFFTEE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [326]
'gi|3327271|dbj|BAA31699.1| PKn2 [Ipomoea nil]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDETTYGFPSTSCDYADKA--LMSPDNNNLMMMDYPYAYNYN--------------YNYHPGGAAADTIPFCGASTEVAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCVD-NEDDDV-SSV---------MIKAKIASHPCYPKLLH------AYIDCQK---------------------------------VGAPP-EIATVLDEIRRE--DDELR--KRGGGGAVSS-------------CLG---AD-P--EL------DEFM---------ETYYDMLVKYKSDLSKP----FH----EATTFLNTIET--------------------------------------------QLSNLCKD-------------------------------ESG------------------------------------------------AVS-S-DEEDSG-GETDIQQESIT--------------------------KTEERQL-KNTLL-----------RKYG----SHLSS--LK---LEFSKKKKK--GKLPKEARQTLL------DWWSDHY-KWPYPT------------------EADKIALAESTGLDQKQINNWFINQRKRHWKPS--ESMQLAVME-NLT------------------------GQFFSSDDS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [322]
'gi|5103727|dbj|BAA79225.1| knotted1-type homeobox protein OSH43 [Oryza sativa]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFASLAGGGSSSTTARLPELISPENPDHISPPPLLYQLLAGPESSARQHGHDGHHHGGGGGEAAAAAVQG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QVSPAG-AEA---------AVKAEIMSHPQYSALLA------AYLGCKK---------------------------------VGAPP-DVLTKLTAVPAA-QQLDEADGHPRRRHEPQRD------------------DD-PD-QL------DQFM---------DAYCSMLTRYREELERP----IL----EAAEFFSRVET--------------------------------------------QLDSLAESNC--------------------------------------------------------------------------------EGTGSSEEEQD----------------------------------------PSDKQL-KHQLL-----------RKYG----GSLGD--LR---QVFSKRTKK--GKLPKEARQKLL------HWWELHY-KWPYPS------------------EMEKMTLAQTTGLDQKQINNWFINQRKRHWKPTPVAGTAFPTMEAAGGGFRHSGHGGGL---AAAAALPLYMGR-PFVVDGMYRLGS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [341]
'gi|11463941|dbj|BAB18584.1| CRKNOX2 [Ceratopteris richardii]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATNAVSSTHSASSLSYYSTRIVEPYLQSELLQGT----------------------QGFHRPHTSHCQRQVTSSVESLELS-AVAGE-------------RGKADTAIAIDRSQGFEILSPT-CNYVVSSNGETVLANPSLDST---GHANHEEGPSLPSR-------------------------SM-------AD-RDD---------LIRTKIVSHPSYPRLVM------AYVNCYK---------------------------------IGAPE-DAALILEEVSRK--YQEIR--S---SSSE---------------VIG---AD-P--EL------DNFM---------ELYCNVLQRYHEELTHP----YK----EAMAFFKKIEL--------------------------------------------QLDAISKGSLSLSQSGETKTEAN----------------------------------------------------------SDSAWHGQTGAAPSIEDEPEEGDMSSGEVDFHDEMID--------------------PL-AEDQKL-KEQLL-----------RKYS----GYIFK--LK---QEFLKKKKK--GKLPREARQMLL------DWWTQHY-KWPYPS------------------EAEKTALAESTGLDQKQINNWFINQRKRHWKPS--EDMQYVMMD-SPAGQTQHTFLRPHSHIASQHLSPYTVLQTMEVAAGAAPSATMMSSLH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [430]
'gi|50872441|gb|AAT85041.1| knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)]'                                 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFASLAGGGSSSTTARLPELISPENPDHISPPPLLYQLLAGPESSARQHGHDGHHHGGGGGEAAAAAVQG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QVSPAG-AEA---------AVKAEIMSHPQYSALLA------AYLGCKK---------------------------------VGAPP-DVLTKLTAVPAA-QQLDEADGHPRRRHEPQRD------------------DD-PD-QL------DQFM---------DAYCSMLTRYREELERP----IL----EAAEFFSRVET--------------------------------------------QLDSLA-------------------------------------------------------------------------------------GTGSSEEEQD----------------------------------------PSDKQL-KHQLL-----------RKYG----GSLGD--LR---QVFSKRTKK--GKLPKEARQKLL------HWWELHY-KWPYPS------------------EMEKMTLAQTTGLDQKQINNWFINQRKRHWKPTPVAGTAFPTMEAAGGGFRHSGHGGGL---AAAAALPLYMGR-PFVVDGMYRLGS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [336]
'gi|55416167|gb|AAV50045.1| homeobox protein [Saccharum hybrid cultivar]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR--VGGAA---SEAS------------------------------------------------------------------------------------TAGVGAGGPS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSD-LTE---------LMKAQIASHPRYPSLLS------AYIECRK---------------------------------VGAPP-QVASLLEEVSRE--RSPGA--A---GAGE----------------IG---VD-P--EL------DEFM---------DSYCRVLVRYKEELSRP----FD----EAASFLSSIQA--------------------------------------------QLSNLCSAGSSP-AATATH-------------------SDDM------------------------------------------------MGS-S-EDEQCS-GDTD-VPDIGQ--EH--------------------SSRLADHEL-KEMLL-----------KKYS----GCLSR--LR---SEFLKKRKK--GKLPKDARTVLL------EWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQKKKHWKPS--EDMRFALME-GVA------------------------GG--SSGTTSTSIQAQLDPESHTIWDDNWPIQSVVRPGM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [315]
'gi|42563111|ref|NP 177208.2| KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor [Arabidopsis thaliana] >gi|'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--DRMCGFRST-EDYSEKATLMM----------PSDYQSLI--------------------CSTTGDNQ--RLFGSDEL----ATALSSE---LLPR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-KAEDNF-SLS---------VIKSKIASHPLYPRLLQ------TYIDCQK---------------------------------VGAPM-EIACILEEIQRE--NHVYK--R---DVAPLS-------------CFG---AD-P--EL------DEFM---------ETYCDILVKYKTDLARP----FD----EATTFINKIEM--------------------------------------------QLQNLCT---GPASATALS--------------------DDG------------------------------------------------AVS-S-DEELRE-DDDIAADDSQQ--------------------------RSNDRDL-KDQLL-----------RKFG----SHISS--LK---LEFSKKKKK--GKLPREARQALL------DWWNVHN-KWPYPT------------------EGDKISLAEETGLDQKQINNWFINQRKRHWKPS--ENMPFDMMD-DSN------------------------ETFFTE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [310]
'gi|4240539|gb|AAD13611.1| knotted class 1 homeodomain protein liguleless3 [Zea mays]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR-VVGGAASEAS---------------------------------------------------------------------------------------VAGAGAGGPS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSD-LTE---------LMKAQIASHPRYPSLLS------AYIECRK---------------------------------VGAHP-HVTSLLEEVSRE--RRPDAGAG----------------------EIG---VD-P--EL------DEFM---------DAYCRVLVRYKEELTRP----FD----EAASFLSSIQA--------------------------------------------QLSDLCSGGSSP-AATATH-------------------SDDM------------------------------------------------MGS-S-EDEQCS-GDTD-VPDMGQ--EH--------------------SSHLGDHEL-KEMLL-----------KKYS----GCLSR--LR---SEFLKKRKK--GKLPKDARTVLL------EWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWKPS--EDMRFALME-GVA------------------------GG--SSGTTLYFDTGTIGP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [295]
'gi|30348863|gb|AAP31409.1| knotted1-like homeodomain protein liguleless4a [Zea mays]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR--AGGAATAASEVS------------------------------------------------------------------------------------GVAGGPGSPPPPP-------------------------------------------------------------------------------------------------------------------------------------------------------------------SQPP-PPPPAD-LTE---------LVKAQIAGHPRYPSLLS------AYIECRK---------------------------------VGAPP-EVATLLEEIGRE--RCAAA--S---AGGE----------------VG---LD-P--EL------DEFM---------EAYCRVLERYKEELSRP----FD----EAASFLSSVRT--------------------------------------------QLSSLCGA-------AASL-------------------SDEM------------------------------------------------VGS-SEEDEACSGGDTEATEPGQQ--EH--------------------SSRLADREL-KEMLL-----------KKYS----GCLSR--LR---SEFLKKRKK--GKLPKDARSALM------DWWNTHY-RWPYPT------------------EEDKVRLAAATGLDPKQINNWFINQRKRHWKPS--EDMRFALME-GVT------------------------GGGPSSGTTLYFDTGTIGP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [307]
'gi|12325041|gb|AAG52468.1| homeotic protein (ATK1); 26548-32058 [Arabidopsis thaliana] >gi|25386225|pir||A96729 homeotic protei'    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--DRMCGFRST-EDYSEKATLMM----------PSDYQSLI--------------------CSTTGDNQ--RLFGSDEL----ATALSSE---LLPR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IR-KAEDNF-SLS---------VIKSKIASHPLYPRLLQ------TYIDCQK---------------------------------VGAPM-EIACILEEIQRE--NHVYK--R---DVAPLS-------------CFG---AD-P--EL------DEFM---------ETYCDILVKYKTDLARP----FD----EATTFINKIEM--------------------------------------------QLQNLCT---GPASATALS-------------------ADDG------------------------------------------------AVS-S-DEELRE-DDDIAADDSQQ--------------------------RSNDRDL-KDQLL-----------RKFG----SHISS--LK---LEFSKKKKK--GKLPREARQALL------DWWNVHN-KWPYPT------------------EGDKISLAEETGLDQKQINNWFINQRKRHWKPS--ENMPFDMMD-DSN------------------------ETFFTE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [311]
'gi|34896868|ref|NP 909778.1| putative knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|31745219|gb|A'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESFASLAGGGSSSTTARLPELIPPENPDRISPPPLLYQLLAGSASSARHGH--GHHHGGGGG-AAAAAVQGL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QVSPAG-AEA---------AMKAEIMSHPQYSALLA------AYLGCKK---------------------------------VGAPP-DVLTKLTAVPAAQQQLDAADGHPRRRHEPRRD------------------DDVPDHQL------DQFM---------DAYCSMLTRYREELERP----IL----EAAEFFSLIRS--------------------------------------------LVNSNC------------------------------------------------------------------------------------EGTGSSEEEQDTSCPEAEEID------------------------------PSDKQL-KHQLL-----------MKYG----GSLGD--LR---QAFSKRTKK--GKLPKEARLKLL------HWWELHYDKWPYPS------------------EVEKMTLAQTTGLDQKQISNWFINQRKRHWKPTPVAGMTFPTVEAAGGGFRHSGHDGGLAAAAAAAALPLYMGSWPFVVDGMYRLGS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [353]
'gi|50900828|ref|XP 462847.1| putative knotted1-type homeobox protein [Oryza sativa (japonica cultivar-group)] >gi|21104563|dbj|'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR--VGGAASEASGVG------------------------------------------------------------------------------------VVVGGGGGSS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSD-LTE---------LMKAQIAGHPRYPTLLS------AYIECRK---------------------------------VGAPP-EVASLLKEIGRE--RRAGG--G---GGGA-G-------------QIG---VD-P--EL------DEFM---------EAYCRVLVRYKEELSRP----FD----EAASFLSSIQT--------------------------------------------QLSNLCSGATSPPATTATH-------------------SDEM------------------------------------------------VGS-S-DEDQCS-GETD-MLDIGQ--EQ--------------------SSRLADHEL-KEMLL-----------KKYS----GCLSR--LR---SEFLKKRKK--GKLPKDARSALL------EWWNTHY-RWPYPT------------------EEDKLRLAARTGLDPKQINNWFINQRKRHWKPS--DGMRFALME-GVA------------------------GG--SSGTTLYFDTGTIGP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [301]
'gi|58011285|gb|AAW62517.1| KNOTTED1-like protein [Selaginella kraussiana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MELRGRRSTSQSPASTQDSTEVSMEQHLPPPRHPHPQQHEMGAMMV--------------LMEESSNAHHHHLGSTS------SMPPHQEQQQNPYRPSAAGEHQQQFFLPGMIKEESSPHHQQQQQNFLLPSSVFSME----------------------NICWPTNDQADLMESMSPESADLCRNLSSQL-------------EHFRKEIGTYHGAESSSQQHHLVSSASGSSSGSYGVDKSLSVVP---AVSLASD--------------------------------LLGS-TSSQSS-ESE---------MLRAAIVSHPHYPELVV------AHMNCHK---------------------------------VAASP-EVVSQIDEIIQN--FKDFQ--P---PVAA---------------SLG---AN-P--EL------DQFM---------VAYYSMLLKCEKEVRKT----FK----EAVAFCKKLDQ--------------------------------------------QFQVITNGSASSVTSV-------------------------------------------------------------------ESDDRNEAYDSSEDED------SGAEVEI-E--VD--------------------PM-AKDKEL-KEQLM-----------RKYS----GYISS--LK---HEFLKKKKK--GKLPKDSRQILL------NWWSVHY-KWPYPS------------------ESEKASLAESTGLDQKQINNWFINQRKRHWKPS--DELTALSGQPSQSTEASSGS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [460]
'gi|28195122|gb|AAO33774.1| knotted protein TKN4 [Lycopersicon esculentum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDELSKLHSAIVCSHSRRQ----------------------------------------------------------------QEVEVEAEAGPTIINNTTTSFAAVHHHYCQLEAAVAADHNH-------------------------------------------------------------------------------------------------------------------------------------------------------------------HQNN-TKSTTN-MSD---------LIKAQIANHPLYPNLLS------AYLQCRK---------------------------------VGAPQ-EMTSILDEISKE--NNLIS------SSRHSS-------------EIG---AD-P--EL------DEFM---------ESYCAVLVKYKEEFSKP----FD----EATSFLSNIES--------------------------------------------QLSSLCK-----------DNLITST-------SFNNYISDEA------------------------------------------------GGS-S-DEDLGC-EEMEAADS-QE--SP--------------------ANCEGDNEL-KEMLM-----------RKYS----GYLSS--LR---KEFLKKRKK--GKLPKEARIVLL------DWWKNHY-RWPYPT------------------EEEKNRLSEMTGLDQKQINNWFINQRKRHWRPS--EDMKFALME-GVS----------------------------AGSMYFDGSGGTGNIGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [335]
'gi|31323451|gb|AAP47027.1| knotted homeodomain protein 4 [Lycopersicon esculentum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVLMMDELSKLHSAIVCSHSRRQ----------------------------------------------------------------QEVEVEAEAGPTIINNTTTSFAAVHHHYCQLEAAVAADHNH-------------------------------------------------------------------------------------------------------------------------------------------------------------------HQNN-TKSTTN-MSD---------LIKAQIANHPLYPNLLS------AYLQCRK---------------------------------VGAPQ-EMTSILDEISKE--NNLIS------SSRHSS-------------EIG---AD-P--EL------DEFM---------ESYCAVLVKYKEEFSKP----FD----EATSFLSNIES--------------------------------------------QLSSLCK-----------DNLITST-------SFNNYISDEA------------------------------------------------GGS-S-DEDLGC-EEMEAADS-QE--SP--------------------ANCEGDNEL-KEMLM-----------RKYS----GYLSS--LR---KEFLKKRKK--GKLPKEARIVLL------DWWKNHY-RWPYPT------------------EEEKNRLSEMTGLDQKQINNWFINQRKRHWRPS--EDMKFALME-GVS----------------------------AGSMYFDGSGGTGNIGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [338]
'gi|51854371|gb|AAU10751.1| KNOX class homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|2935573|gb|AAC32817.1| K'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISRGGGGGGGGAASEAS------------------------------------------------------------------------------------GVAGGGSSPPHPP-------------------------------------------------------------------------------------------------------------------------------------------------------------------PPAT-TAAAAD-LTE---------LMKAQIAGHPSYPSLLS------AYIECRK---------------------------------VGAPP-EVTTLLEEIGRE--GRGGG--G---GATAGG-------------EIG---LD-P--EL------DEFM---------ETYCRVLERYKEELTRP----FD----EAASFLTGIHT--------------------------------------------QLASLCGGAPPP----TDN-------------------SDEM------------------------------------------------VGS-S-EDEPCS-GDAD-AADFGQ--EH--------------------SSRLADHEL-KEMLL-----------KKYS----GCLSR--LR---SEFLKKRKK--GKLPKDARSALM------DWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWKPS--EDMRFALME-GVT------------------------GGS-SSGTTLYFDTGTIGP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [311]
'gi|3327275|dbj|BAA31701.1| PKn3 [Ipomoea nil]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDELYGIHSVLAPSNAPSNNNNNVFSLGVDDIHHHHNHHHHQSSMM--------------NGGIVISGDEGQLQGQHHHHHHLLVTSSNDNYYNSDEN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKGG-GGGVEM-MSD---------VVKAQIASHPLYPNLVS------AYIQCRK---------------------------------VAAPP-EMAALLEELSKV--TQPIT----------TA-------------EIG---AD-P--EL------DEFM---------ESYCEVLYKYKEELSKP----FD----EAKTFLSSIES--------------------------------------------QLSNLCKDTFPTTSFNS----------------------------------------------------------------YHSGDEA--GGT-SE-EDLSC-GEVEVAESQEH--LN--------------------NNSEGDQQI-KEMLM-----------RKYS----GYLSS--LR---KEFLKKRKK--GKLPKDARVALL------DWWNSHY-RWPYTT------------------EEEKNKLSEATGLDQKQINNWFINQRKRHWRPS--EDMRFALME-GVS--------------------GDVAGSMFFDAGGGTGNLGI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [358]
'gi|30348865|gb|AAP31410.1| knotted1-like homeodomain protein liguleless4b [Zea mays]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDLYSIHPGISR--HGAAAT--SEAS------------------------------------------------------------------------------------GVAGGPGSPP------------------------------------------------------------------------------------------------------------------------------------------------------------------------PP-PPPAAD-LTE---------LVKAQIAGHPRYPSLLS------AYIDCRK---------------------------------VGAPS-EVATLLEEIGRE--RCAAA--S---AGGE---------------VVG---MD-P--EL------DEFM---------ETYCRLLERYKEELSRP----FD----EAASFLSSVRT--------------------------------------------QLSSLCGG-------AASL-------------------SDEM------------------------------------------------VES-S-EDEPCS-GDTDATTDPGQ--EH--------------------SSRLADREL-KEMLL-----------KKYS----GCLSR--LR---SEFLKKRKK--GKLPKDARSALM------DWWNTHY-RWPYPT------------------EEDKVRLAAMTGLDPKQINNWFINQRKRHWKPS--EDMRFALME-GGV------------------------SGS-SSGTTLYFDTGTIGP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [298]
'gi|50917693|ref|XP 469243.1| putative KNOX class homeodomain protein [Oryza sativa (japonica cultivar-group)] >gi|40538948|gb|A'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQLHLLL---ASGGGSKASTTITPFCLARDHASTSSPSPAAVAAPAPPPEATSGSE--------------QS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IHGS-GTGLQS-SEA---------MIKAKIMSHPLYPSLLR------AFVDCKK---------------------------------VGAPP-EVVGRLSSLAVV--TDVPQ--YSGDRCLPAQ-------------QPA---AD-P--EL------DQFM---------ETYCYMLTRYGQELARP----IQ----EAEEFFRGIEE--------------------------------------------QIDSLALDE---------------------------------------------------------------------------------DVSYDYEDEVAG---------------------------GLPEKSAAFGENEVTTTT-RRHLM-----------NKYS----GYLNS--LW---TEISNKKKNSTGHLPRDARHKLL------QWWHLHY-RWPYPS------------------EAEKAALAESTGLDKKQVTNWFINQRKRHWKPKPAAAMDAGFLQMHPRYGASSSSSPAAALRVEDGGGRRSAYHPRGGP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [337]
'gi|4589449|dbj|BAA76750.1| KN1-type homeobox protein [Nicotiana tabacum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDELSKLHSAIACSSNNNH-----------------------------------------------------------VVGVLEHITGQQQEGP--INNSSVD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNL-EKASLE-MSD---------LIKAQIANHPLYPNLLS------AYLQCRK---------------------------------VGAPQ-EMASILEEISKE--NHLIS------SG-HNT-------------EIG---TD-P--EL------DDFM---------ESYCAVLLKYKEELSKP----FD----EATTFLNNIES--------------------------------------------QLSSLCK-----------ENLTTTTTTTTSFNSNNNYLSDEA------------------------------------------------GGT-S-DEDLCC-GEMEAADSTQE--SP--------------------ANREGDNEL-KETLM-----------RKYS----GYLSS--LR---KEFLKKRKK--GKLPKDARTALL------EWWNTHY-RWPYPT------------------EEEKNRLSEITGLDPKQINNWFINQRKRHWRPS--EDMKYALME-GVS------------------------SGSIAGSMYFDGAGGTGSIGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [327]
'gi|33333544|gb|AAQ11888.1| knotted 1 [Nicotiana tabacum]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMDELSKLHSAIACSSNNNH-----------------------------------------------------------VVGVLEHITGQQQEGP--INNSSVD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNL-EKASLE-MSD---------LIKAQIANHPLYPNLLS------AYLQCRK---------------------------------VGTPQ-EMASILEEISKE--NHLIS------SC-HNT-------------EIG---TD-P--EL------DDFM---------ESYCAVLLKYKEELSKP----FD----EATTFLNNIES--------------------------------------------QLSSLCK-----------ENLTTTTTTTTSFNSNNNYLSDEA------------------------------------------------GGT-S-DEDLGC-REMEAVDSTQE--SP--------------------ANREGDNEL-KETLM-----------RKYS----GYLSS--LR---KEFLKKRKK--GKLPKDARTALL------DWWNTHY-RWPYPT------------------EEEKNRLSEITGLDPKQINNWFINQRKRHWRPS--EDMKYALME-GVS------------------------SGSIAGSMYFDGAGGTGSIGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [327]
lcl|SmoKNAT1C6s2C3_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEWLVEGLIEQAAEGLTTS-PPPPPPPLAPTSSMAAPRTEHEDMDPRGSKVSL-SDS---------EIMSAISGHPQYKELLR------AHMNCYK---------------------------------VGASA-DLAAQMDELVRKREFESAVKT-----------------------------------SIGVDPELDQFMLQSLTVFYQVAYCNVLNAYEIELRRT----FK----EAIEFCKKQEH--------------------------------------------QLSVIAVSNIDVLS------------------------------------------------------------------------SAENEDASETYEDFMEEAESGGIGEVDT-DLD--------------------PL-AGDKEL-KKVLM-----------KRYG----GYIKG--LT---QEYLKKKKK--GKLPKESRQQLL------DWWSQHQ-DHPYPN------------------ENQKSNLAQSTGLDPKQINNWFINQRKRHWNPQAISLQGYIFGF------------------------------------------------------------------------------DPHPRTIDVTTADDYKHLRE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [324]
lcl|SmoKNAT1C7s2C45_unnamed_protein_product                                    MLPTVLVQLTAGVIFSAQNQGYTHAIVARLPSEDALEAFNKHEAYVSIIEWKLLELRSSSEKRSETRTKKEIRGEEILSSSRNIHAMSLCVLDSAELVAIIEGSSVPHFMKPTQDMYMLARSYKTRRSNYRNISRKAMQTRKAHSPTCKITRVSGGLDDCTTDPCREISRSKAQILCTRRRLFEEQRNHGVFEAECSMAFGRDLQALRMALGRLYFVMLLLMLILSITTGVARELQVNNHRVLRAQRGPESFSVDPNNSTGASVRSVLDKCKKNRANKAVSVPSRVPTAALMRSKISPSVVPFTTLKSLADEWRFTASRVVITYSSSSTTQYLIQHSSPSSSSSSISIAPPKPYPLQGSNSGSAIKIAPPALLLRGSALVLVVAGAWIAWKRYRISAMAKQPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAESLNGVKMELIDSAFPLLKGVIATTDVEEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKCAAKDVKVLVVANPANTNALILKEFAPSIPDKNITCLTRLDHNRALGQISERTGFQVSDVKNVIIWGNHSSTQYPDVNHAVVITPKGEKPVREVVNDDEWQASFFLSFFEVYICFVYHSRLNGPFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVLSDGSYKVPKGVIYSFPVTCANGEWSIVQGLLIDGFSRTKLDATADELIEEKEMAYSCLLLSAERNNNSTCNCL---LRIRALLTSRAYDMFEQCCVPWDASGSRNKAGQGNEMRSANNKTTN--------------KSFGEGPSPPMCSNNVQQIVLWKMPTFMLQRWVGFFQFFCVIELKIDILIEISHGADGQALLPKEIPRGKFTRILLVVDSWFDISQRDGHSPFGAHPTPEQHDAFLAASSALISQACVKEDPEPQQQHHLID-------------HGAAAAAAAGYSMEHLAWDNHSFIESMSPESADLCKHLLEHIHG---AHFPHGEGSRHDPEEQQPHHHHGGASSSSSGARLAPPPGSMAS-SISTTE-TDE---------TMKASIVAHAHYPDLLA------SLLNIQKVLLAQVVDVFFGFWDSWIDTRSGFLQSLCLNQKVGAPP-DRVAKLDEAGQLLLNLRPAVVT----------------------SVG---AN-P--EL------DDFM---------VAYCAIMKEFEDEFRNV----LE----GAMAFCKTKTD--------------------------------------------QLGAIAAASVHMNSVVTSVSDHPVESEEPETTTT--------------------------------------------------------GGGAEIEEDISSSEVGNEV-----------------------------DPLAKDENL-KEYLA-----------QRYG----AYIKG--LK---QEFLKKKKK--GKLPKHSTEKLY------EWWEAHI-KWPYPS------------------EQEKANLATDTGLDQKQINNWFINQRKRHWNPS--EHDRPLSSVSARGNTEG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1325]
lcl|SmoKNAT1C6s2C13_unnamed_protein_product                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEEWLVEGLIEQAAEGLTTSPPPPPPPPLAPTSSMAAPRTEHEDMDPRGSKVSL-SDS---------EIMSAISGHPQYKELLR------AHMNCYK---------------------------------VGASA-DLAAQMDELVRKREFESAVKT-----------------------------------SIGVDPELDQFM---------VAYCNVLNAYEIELRRT----FK----EAIEFCKKQEH--------------------------------------------QLSVIAVSNIDVLSSDWIGLDCNTLSLDQTGIANPIAKDHHNRQQRQQQEQWWSDRDGSIDRRSTEEPAVVRLFSAERILLLLTVLSAENEDASETYEDFMEEAESGGIGEVDT-DLD--------------------PL-AGDKEL-KKVLM-----------KRYG----GYIKG--LT---QEYLKKKKK--GKLPKESRQQLL------DWWSQHQ-DHPYPN------------------ENQKSNLAQSTGLDPKQINNWFINQRKRHWNPQAVPFLREVSHRFLSKARYTTLKRVSPPHSLPMDWFSLLFCLAPISFGVVFFTSEECANSCQEAEGAVYKIAKRNSEVTFLRLKVEEEGIQEIVRQRDTSRLEMFPLFSHF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [467]
'gi|58011287|gb|AAW62518.1| KNOTTED1-like protein [Selaginella kraussiana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSAAASSSSKFTAPASTMDEWYMLSSYQSLIDANEGLEHAAG--------------ALEHHQQQQSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSKQ-KSSLQL-SEK---------EMKAAISGHPQYLELIK------AHMSIKK---------------------------------VGASS-QKVAEINEVIRM--HQDSQPSSVHT-------------------NIG---AN-P--EL------DQFM---------VAYCDVLNMYENQLNKA----FT----GAIEYCKQQEQ--------------------------------------------ELKLVSVSDEPIDALSSVEL----------------------------------------------------------------------DDDVEDDEEAESDDVAADGGD-----ID--------------------PL-IGDKEI-KRALM-----------KKYG----GYLGG--LT---QEYLKKKKK--SKLPSAATKTLR------DWWFQHL-EHPYPS------------------EAQKATLAATTKLDPKQINNWFINQRKRHWDPS--AAAASARGESLQQQGSQDGD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [315]
'gi|14456343|gb|AAK62559.1| class 1 KNOTTED1-like protein MKN4 [Physcomitrella patens]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNRDMVGIVSSASARLEENPRLESYIASTGELAGWVEKSASVEATRSSLQLSQSQAFFEQYSTQYPQSDISSSSQADISAHDYLNIFKGTHAQAKADMKPRITQFMIPVQNQLEAGSYLL-------------PHMAHDDSNNFSTSSNIGRATQSLCTMHQDMETLRQVPKSNDLL---IAITASAAAAVNQERGSGSETGQ--------------HDRDDD-EKNKAT-DRGKLPENEEEQLLRDAIVDHPLYPELVV------AHISIFK---------------------------------IGAPK-GLLIKLDEMEKK--FQRFQYGESSWNVLHVT-------------------------KFGQDPSLDFFM---------RSYIDLLTKFREDLENP--------YNKFAQYKDKVTK--------------------------------------------DLEDLCGHY---------------------------------------------------------------------------------IETTPDEEDNFGSDIGTKDM-SQDLNDLEILGEENLMYTADIDESIVIDPDAADEEL-KKMLR-----------LKYG----KHIAG--LK---AEFNRVRKK--GKLPTNARQILK------DWFSRHS-YWPYPS------------------EMEKAYLQRLCGLNLKQINNWFINERKRHWSCK--GKCMYPNTKFYPRDGHVDPNNHGEGYLEQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [488]
'gi|1805617|dbj|BAA08552.1| OSH45 [Oryza sativa (japonica cultivar-group)]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAF-HGHL---PHEMTM-----------QALGADDAAVAAAAAAGGVGAG----------------------------------------------------------------------------------------------GAPAWMRYNDGSFLH------LQTTSDSSASPSGAA------------AAAAAAAAAAA-------------AGVQQWMGGGG------------------------------------GGEDAVAAAM--------------------------GGGGEA---------DAA---------RCKAEILAHPLYEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQGVVAKYSALAAAA-AG----D-------------DG-R--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------NLQSLTGASPGEG-----------------------------------------------------------------------------TGATMSDGEDD---QADSEANMYDPSLD-GAD-NMGFG--LPTESERSLMERVRQEL-KHELK-----------QGYK----EKLID--IR---EEILRKRRA--GKLPGDTTSTLK------AWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSSTSV-KTKRKR--AG------------------------------GIHPKQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [375]
'gi|1805618|dbj|BAA08553.1| OSH45 [Oryza sativa (japonica cultivar-group)]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAF-HGHL---PHEMTM-----------QALGADDAAVAAAAAAGGVGAG----------------------------------------------------------------------------------------------GAPAWMRYNDGSFLH------LQTTSDSSASPSGAA------------AAAAAAAAAAA-------------AGVQQWMGGGG------------------------------------GGEDAVAAAM--------------------------GGGGEA---------DAA---------RCKAEILAHPLYEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQGVVAKYSALAAAA-AG----D-------------DG-R--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------NLQSLTGASPGEG-----------------------------------------------------------------------------TGATMSDGEDD---QADSEANMYDPSLD-GAD-NMGFG--LPTESERSLMERVRQEL-KHELK-----------QGYK----EKLID--IR---EEILRKRRA--GKLPGDTTSTLK------AWWQSHA-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSSTSV-KTKRKS--NA------------------------------GDNNS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [374]
'gi|60100884|gb|AAK61308.2| class 1 KNOTTED1-like protein MKN2 [Physcomitrella patens]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MASEGSINRDTEKF-----QQELAYKCPRSSDLL---LAITTSANTAV-REHGSSAERRRRGNSGLFGNMSLLTEDEDDA-PDAQDH-EFEDNPQSEQDLELRAAIIDHPFYPEMVL------AHVRVFK---------------------------------IGAPG-RLRRKLDELAKK--FQRFQ??D------HTS-------------------------KIGSDPELDHF?---------RSYVGVLTKFAEDLEEP--------FNKFIQFTDNTSK--------------------------------------------ALEEICGHY---------------------------------------------------------------------------------VDTTPD-EDNCGFDIGPLEYGAQEGDDLDTLGDENVMYPLDIDESVIVDPMASDEDI-KKALR-----------KKYG----RHIGE--LK---AEFNRVRKK--GKLPTSARTILK------DWFNRHS-HWPYPS------------------EMEKQYLQRICGLNLKQINNWFINERKRHWSCE--GKCMHPNAKFYGTS-----NGQCRGHLE?EQSNRLQ?S-----------------------------------------------------------------SEETIYVKCSHAALIFEVSM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [384]
'gi|1946222|emb|CAA96512.1| knotted1-like homeobox protein [Malus x domestica] >gi|3023961|sp|O04136|KNAP3 MALDO Homeobox protei'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAY-HNHL---SQDLPLHHFTDQTHHQHQQYQSDQPDPNSKPPEPHHSFQ----------------------------------------------------------------------------------------------PAPNWL---NSALLR------NFTNTDTNPTNSNNANNNGGGVSNFLNLHVTASDSAAS-------------QASNQWLSQSHRPIL------HRNHSD----VN------DDVTV---AGDSMIAAALS---------HDSADLKPDSILNKNEGGGGDG---GVMNW-QNA---------RHKAEILAHPLYEPLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQNVVAKYSALGNGM-VG------------------DD-K--EL------DQFM---------RNYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------TSATMSDDEDD---QVDSDANLFDEGME-GHD-SMGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------AWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSTSTVL-KSKRKR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [427]
'gi|15238743|ref|NP 197904.1| KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription factor [Arabidopsis thaliana] >gi|4063731|gb|'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHHNHL---SQDLSFNHFTDQ-----HQPPPPQPPPPPPQQQQHFQEA----------------------------------------------------------------------------------------------PPPNWL---NTALLRSSDNNNNFLNLHTATANTTTASSSD-----------SPSSAAAA-------------AAANQWLSRSSSFLQ------RNNNNN----ASIVGDGIDDVTG---GADTMIQGEMK---------TGGGE-------NKNDGGGATAA-DGVVSW-QNA---------RHKAEILSHPLYEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQHVVAKYSALGAAA-QG--LVG-------------DD-K--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------MGATMSDDEDE---QVESDANMFDG----GLD-VLGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------AWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSSTVL-KNKRKSNAGDNSGRERFA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [431]
'gi|79328660|ref|NP 001031938.1| KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHHNHL---SQDLSFNHFTDQ-----HQPPPPQPPPPPPQQQQHFQEA----------------------------------------------------------------------------------------------PPPNWL---NTALLRSSDNNNNFLNLHTATANTTTASSSD-----------SPSSAAAA-------------AAANQWLSRSSSFLQ------RNNNNN----ASIVGDGIDDVTG---GADTMIQGEMK---------TGGGE-------NKNDGGGATAA-DGVVSW-QNA---------RHKAEILSHPLYEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQHVVAKYSALGAAA-QG--LVG-------------DD-K--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------MGATMSDDEDE---QVESDANMFDG----GLD-VLGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------AWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSSTVL-KNKRKR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [419]
'gi|21554222|gb|AAM63298.1| KNAT3 homeodomain protein [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHHNHL---SQDLSFNHFTDQ-----HQPPPPQPPPPPPQQQQHFQEA----------------------------------------------------------------------------------------------PPPNWL---NTALLRSSDNNNNFLNLHTATANTTTASSSD-----------SPSSAAAA-------------AAANQWLSLSSSFLQ------RNNNNN----ASIVGDGIDDVTG---GADTMIQGEMK---------TGGGE-------NKNDGGGATAA-DGVVSW-QNA---------RHKAEILSHPLYEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQHVVAKYSALGAAA-QG--LVG-------------DD-K--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------MGATMSDDEDE---QVESDANMFDG----GLD-VLGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------AWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSSTVL-KNKRKSNAGDNSGRERFA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [431]
'gi|23197862|gb|AAN15458.1| KNAT3 homeodomain protein [Arabidopsis thaliana] >gi|21539535|gb|AAM53320.1| KNAT3 homeodomain prote'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIQGEMK---------TGGGE-------NKNDGGGATAA-DGVVSW-QNA---------RHKAEILSHPLYEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQHVVAKYSALGAAA-QG--LVG-------------DD-K--EL------DQFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------MGATMSDDEDE---QVESDANMFDG----GLD-VLGFGPLIPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------AWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSSTVL-KNKRKSNAGDNSGRERFA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [306]
'gi|4098246|gb|AAD00253.1| homeobox 2 protein [Lycopersicon esculentum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQEEGGLGLMGSSNTSGLGGGDIS-SMMISS-EDHHNRNLNHYNQLKSEIATHPLYEQLLS------AHVACLR---------------------------------VRTPI-DQLPLIDAQLTQ--SHNLLRSYASSQQQQQQHSLSHH-------------ER-Q--EL------DNFL---------AQYLLVLCSFKEQLQQH----VRVHAVEAVMACREIEQ--------------------------------------------NLQLLTGATLGEG-----------------------------------------------------------------------------TGATMSDDEDE----LQMDFSLDVSGGD-AHD-LMGMGFGLPTESERSLMERVRQEL-KIELK-----------QGFR----SRIED--VR---EEILRKRRA--GKLPGDTTTVLK------NWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHSN--SQSVTSL-KSKRKR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [310]
'gi|3116212|dbj|BAA25921.1| homeobox gene [Nicotiana tabacum]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAYNPNHM---SQEMDMHHFSDENSAVLRSILPEQLAQSSPDVKP-LDHQ----------------------------------------------------------------------------------------------QPPTWL---NSAILR-------------QESHYTGTGGRGVGENFLNLHSNSESSAAAS-------------QASNQWLSRS----------------------ILRRNVSDVQTS---NNSSAVIAAADLKNDDGNNNNDNGNNNAGGQLTDSEVVGGGGT-DGILNW-QNA---------GYKAEILAHPLFEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQQVVAKYSTLGQNI-------G-------------DD-K--EL------DQFL---------THYVLLLCPFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSLTGVSPGEG-----------------------------------------------------------------------------TGATMSDDEDD---QVDSEANLFDGSLD-GHD-GMAFG--LPTESERSLMERVRQEL-KHDLK-----------QGYK----EKLVD--IR---EEILRKRRA--GKLPGDTTSVLK------AWWQSHA-KWPYPT------------------EEDKAKLVQETGLQLKQINNWFINQRKRDWHSN--ASSSTTS-KSKRKR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [422]
'gi|4098244|gb|AAD09582.1| homeobox 1 protein [Lycopersicon esculentum]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DARK----------------------------------------------------------------------------------------------SPPTWL---NTSLLR---------QQHSQFGNSSSPS--------------SAAAAAAV-------------AGGNNFLHLQTSNSD------SSNSNQWLSPTAAAGGGGNGGGG---GHNDELSESMNFAKKMSQQHSGGGEENN----NNNNNNNNNNN-EEENSW-ERE---------KCKADILNHPLYDQLLS------AHVSCLR---------------------------------IATPV-DQLPRIDAQLAQ--SQNVVAKYSVLGQGQ-PP----L-------------DD-K--DL------DQFM---------THYVLLLSSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------SLQSLTGVAPGEG-----------------------------------------------------------------------------TGATMSDDDDD---QADSDTNFLDGGFD-GPD-SMGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------AWWQSHS-KWPYPT------------------EEDKARLARETGLQLKQINNWFINQRKRNWHSN--PSTSSSQ-KSKRKSAGEI------------------------------KQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [392]
'gi|30683467|ref|NP 196667.2| KNAT4; transcription factor [Arabidopsis thaliana] >gi|26451634|dbj|BAC42914.1| putative homeobox'     -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHNNHF---------NHFTDQQQHQP-------PPPPQQQQQQHFQES----------------------------------------------------------------------------------------------APPNWLLRSDNNFLN---------------------------LHTAASAAATSSDSPSS-------------AAANQWLSRSSSFL-------QRGNTANNNNNETSGDVIEDVPG---GEESMI----------------------------------GEK-KEAERW-QNA---------RHKAEILSHPLYEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQNVVAKYSTLEAAQ---GLLAG-------------DD-K--EL------DHFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSFTGVSPGEG-----------------------------------------------------------------------------TGATMSEDEDE---QVESDAHLFDGSLD-----GLGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------SWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSSTVS-KNKRRSNAGENSGRDR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [393]
'gi|9795158|emb|CAC03454.1| HOMEOBOX PROTEIN KNOTTED-1 LIKE 4 (KNAT4) [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHNNHF---------NHFTDQQQHQP-------PPPPQQQQQQHFQES----------------------------------------------------------------------------------------------APPNWLLRSDNNFLN---------------------------LHTAASAAATSSDSPSS-------------AAANQWLSRSSSFL-------QRGNTANNNNNETSGDVIEDVPG---GEESMI----------------------------------GEK-KEAERW-QNA---------RHKAEILSHPLYEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQNVVAKYSTLEAAQ---GLLAG-------------DD-K--EL------DHFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSFTGVSPGEG-----------------------------------------------------------------------------TGATMSEDEDE---QVESDAHLFDGSLD-----GLGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------SWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSSTVS-KNKRRRYMESLNLEGFLYEAMQVKTAEETVEIKLACRDPKAL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [419]
'gi|1045044|emb|CAA63131.1| KNAT4 homeobox protein [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAFHNNHF---------NHFTDQQQHQP-------PPPPQQQQQQHFQES----------------------------------------------------------------------------------------------APPNWLLRSDNNFLN---------------------------LHTAATAAATSSDSPSS-------------AAANQWLSRSSSFL-------QRGNTANNNNNETSGDVIEDVPG---GEESMI----------------------------------GEK-KEAERW-QNA---------RHKAEILSHPLYEQLLS------AHVACLR---------------------------------IATPV-DQLPRIDAQLAQ--SQNVVAKYSTLEAAQ---GLLAG-------------DD-K--EL------DHFM---------THYVLLLCSFKEQLQQH----VRVHAMEAVMACWEIEQ--------------------------------------------SLQSFTGVSPGEG-----------------------------------------------------------------------------TGATMSEDEDE---QVESDAHLFDGSLD-----GLGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------SWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSSTVS-KNKRRSNAGENSGRDR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [393]
'gi|6016226|sp|O22300|LET12 LYCES Homeobox protein knotted-1-like LET12 >gi|2529703|gb|AAC49918.1| class II knotted-like homeodo'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEF-QDHF---SQEMVLHQQQQQQ----QQQQNAVLRSMLPESPHHDARK----------------------------------------------------------------------------------------------SPPTWL---NTSLLR---------QQHSQFGNASSPS--------------SAAAAAAV-------------AGGNNFLHLQTSNSD------SSNSNQWLSPTAAAGGGSNGGGS---GHNDELSESMNFAKKMSQQHSGGGEENN----NNNNNNNNNNN-EEENSW-ERE---------KCKADILNHPLYDQLLS------AHVSCLR---------------------------------IATPV-DQLPRIDAQLAQ--SQNVVAKYSVLGQGQ-PP----L-------------DD-K--DL------DQFM---------THYVLLLSSFKEQLQQH----VRVHAMEAVMACWELEQ--------------------------------------------SLQSLTGVAPGEG-----------------------------------------------------------------------------TGATMSDDDDD---QADSDTNFLDGGFD-GPD-SMGFGPLVPTESERSLMERVRQEL-KHELK-----------QGYK----EKIVD--IR---EEILRKRRA--GKLPGDTTSVLK------AWWQSHS-KWPYPT------------------EEDKARLVQETGLQLKQINNWFINQRKRNWHSN--PSTSSSQ-KSQTQEC----------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [426]
'gi|15236649|ref|NP 194932.1| KNAT5 (ARABIDOPSIS THALIANA HOMEOBOX 1 GENE); transcription factor [Arabidopsis thaliana] >gi|1722'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSFNSSHLLPPQEDLPLRHFTDQSQQPPPQRHFSETPSLVTASFLNLPTT-------------------------------------------------------------------------------------------------------------------------------------LTTADSDLAPPHRNGDNSVA-------------DTNPRWLSFHSEM---------------QNTGEVRSEVIDGVNA---DGETIL-----------------------------------GV-VGGEDW-RSA---------SYKAAILRHPMYEQLLA------AHVACLR---------------------------------VATPV-DQIPRIDAQLSQ--LHTVAAKYSTLGVVV---------------------DN-K--EL------DHFM---------SHYVVLLCSFKEQLQHH----VCVHAMEAITACWEIEQ--------------------------------------------SLQSLTGVSPSES-----------------------------------------------------------------------------NGKTMSDDEDDN--QVESEVNMFDGSLD-GSDCLMGFGPLVPTERERSLMERVKKEL-KHELK-----------QGFK----EKIVD--IR---EEIMRKRRA--GKLPGDTTSVLK------EWWRTHS-KWPYPT------------------EEDKAKLVQETGLQLKQINNWFINQRKRNWNSN--SSTSSTLTKNKRKRTGKS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [383]
'gi|453949|emb|CAA82314.1| homeodomain-containing protein [Brassica napus] >gi|1170191|sp|P46606|HD1 BRANA Homeobox protein HD1'     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEAALGMIGATV---GGGGDGD-AAVVAE-QNR---------QMKGEIATHPMYDQLLA------AHVACLR---------------------------------VATPI-DQLPIIEAQLSH--SHHLLRSYASTAVGF-----SHH-------------DR-Q--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLQMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESERSLMERVRQEL-KLELK-----------QGFK----SRIED--VR---EEIMRKRRA--GKLPGDTTTVLK------NWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN--SHSLTSL-KSKRKH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [294]
'gi|11463943|dbj|BAB18585.1| CRKNOX3 [Ceratopteris richardii]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEDKSYVE---SKLGAPTWLSGAVQQQQVRASQQGTTNSAGSSFVNEATQ----------------------------------------------------------------------------------------------QQQSHDTPRKWCGCEAGGQCVQCSFMHLSGGGAGGGGSSVAGNGIAMTANHNQQHSAAE-------------AAGLLAIARSGGDLAQSGQGGRGNLLDLHSDTANSSDLVEGEHG---GGE-------------------------------HGGGGHNQQ-DSQVLW-QNA---------RLKADITMHPLYDQLLA------AHVACLR---------------------------------IATPV-DQLPRIDAQIAQ--ASQIVAKYAVLGQNN---LLVGE-------------EK-D--EL------DQFM---------AHYVLLLCTFKEQLQQH----VKVHAMEAVMACWELEQ--------------------------------------------SLLTLTGVSPGEG-----------------------------------------------------------------------------TGATMSDDDDD---PAESDPSIYDPAFD-THD-SGAFGPLIPTETERTLMERVRQEL-KNELK-----------NGYK----DRIVD--VR---EEILRKRRA--GKLPGDTTSVLK------AWWHAHS-KWPYPT------------------EDEKARLVQETGLQLKQINNWFINQRKRNWHSN--PSSTAAM-KTKRKR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [436]
'gi|58011289|gb|AAW62519.1| KNOTTED1-like protein [Selaginella kraussiana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGDQEQQ---ARQ-----------------------------------------------------------------------------------------------------------------------HNNDDREAAAKQMPTWL-----------------------------------------LSSRQQPPPSAQ-------------CDEEAWSSHH-----------HHQQQQASSSSYENP------RT---TTQGLLQDDDKAEHGL-------------------GVGSGDMV-EECARM-QSA---------KLKADIVTHPLYEQLLE------AHVSCLR---------------------------------IATPV-DQLGKIDGQIAQ--CHQLIAKYYILANHQ---LLCGN-------------SK-D--EL------DQFM---------AHYVMLLRSFKDQLQHH----VRVHAKEAVMACWELEQ--------------------------------------------SLLGLTGVSPGEG-----------------------------------------------------------------------------SGATMSDDETT---EQEQQCES-----DLWQD-NLGFGPLIPTETERTLMERVRQEL-KHELK-----------HGYR----ARIVD--VR---?EILRKRRA--GKLPGDTTSVLK------AWWHAHS-KWPYPT------------------EDEKARLVQETGLELKQINNWFINQRKRNWHHH--PSSSAST-TSKLKCKS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [363]
'gi|8493589|gb|AAF75812.1| Strong similarity to Homeobox Protein HD1 from Brassica napus gi|1170191, and contains a lactate/mala'    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGATV-----GGDGD-TAVVAE-QNR---------QLKGEIATHPMYEQLLA------AHVACLR---------------------------------VATPI-DQLPIIEAQLSQ--SHHLLRSYASTAVGY------HH-------------DR-H--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLPMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESERSLMERVRQEL-KLELK-----------QGFK----SRIED--VR---EEIMRKRRA--GKLPGDTTTVLK------NWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN--SHSLTSL-KSKRKH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [283]
'gi|26451690|dbj|BAC42940.1| putative homeodomain transcription factor KNAT6 [Arabidopsis thaliana]'                                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMGATV-----GGDGD-TAVVAE-QNR---------QLKGEIATHPMYEQLLA------AHVACLR---------------------------------VATPI-DQLPIIEAQLSQ--SHHLLRSYASTAVGY------HH-------------DR-H--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLPMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESERSLMERVRQEL-KLELK-----------QGFK----SRIED--VR---EEIMRKRRA--GKLPGDTTTVLK------NWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN--SHSLTSL-KSKRKH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [284]
'gi|18407708|ref|NP 564805.1| KNAT7; DNA binding / transcription factor [Arabidopsis thaliana] >gi|11878230|gb|AAG40858.1| homeo'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEAALGMMGATV-----GGDGD-TAVVAE-QNR---------QLKGEIATHPMYEQLLA------AHVACLR---------------------------------VATPI-DQLPIIEAQLSQ--SHHLLRSYASTAVGY------HH-------------DR-H--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLPMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESERSLMERVRQEL-KLELK-----------QGFK----SRIED--VR---EEIMRKRRA--GKLPGDTTTVLK------NWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN--SHSLTSL-KSKRKH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [291]
'gi|21618231|gb|AAM67281.1| homeodomain-containing protein HD1, putative [Arabidopsis thaliana]'                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGASV-----GGDGD-AAVVAE-QNR---------QLKGEIATHPMYEQLLA------AHVACLR---------------------------------VATPI-DQLPIIEAQLSQ--SHHLLRSYASTAVGY------HH-------------DR-H--EL------DNFL---------AQYVMVLCSFKEQLQQH----VRVHAVEAVMACREIEN--------------------------------------------NLHSLTGATLGEG-----------------------------------------------------------------------------SGATMSEDEDDLPMDFSSDNSGVDFS-G-GHD-MTGFGPLLPTESEKSLMERVRQEL-KLELK-----------QGFK----SRIED--VR---EEIMRKRRA--GKLPGDTTTVLK------NWWQQHC-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN--SHSLTSL-KSKRKH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [283]
'gi|5802260|gb|AAD51632.1| KNOX1 homeodomain protein [Acetabularia acetabulum]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN---DMDFAALFNQHEGNNPDNLQPNAPPYMLSPQQNAAATMPKSHC-SGDNTL-MLS---------DMGEQVIMHPLYPDLVK------AIMDCRK---------------------------------VGGMD-ESRHHIQIRTEQ--VLEDLHRKREQYQITGR-------------MPA---LD-P--EL------DQFL---------RQYIQVLDELHAELLNI----NR----EADNILHMFTT--------------------------------------------QIAEVINMP-------------------------------------------------------------------------------------MDPRSMHARNAFNAQSNIDMTWFE----------------------IRNEQEQ-RVLLK-----------QKYR----QELLA--LK---EEFSKRKKR--GKLPTHSIEVLK------SWWKEHI-AWPYPT------------------DSAKRSLASQTNLTSIQINNWFINQRKRHWHKLFPEGVPNSQEEALRS--------------------LKARGMLGMDSSGPMRLMSMDIESQETQEVEQETEDIQTPNEFQFQSAFLNEHEQMMDEAGFTSRPNVQLPDAISQFQSQLGQIRKDSDE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [382]
'gi|14348597|gb|AAK61309.1| class 2 KNOTTED1-like protein MKN1-3 [Physcomitrella patens]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMAFNNLSHDVSLQQFPELWESSRFSQRHDTLDADQHTQGFDDTQFPKEPLEPNTNLH--------------QVAMEIQPNATIIGDESSRGRNPVVNESDDREDDNHLLGTEDGIVKNGRTWLNSALLREQNQASEDRSGYGDHNAAERW----------------------CPVCSASGSQSCMCGMPMHAGDSSTISFPNQ-------------STYTHWLSMQGANMLASQHRTGGEVDAKAAGFTVSPQSTKMATELNLSPAGHGRDNHALFTDPRHSVAQGGSRYAEDYERTEHQTDWEGA-TQKMEW-EQA---------RDKFLIVAHPLYPDLLN------AHASCLR---------------------------------VGTPV-DQLPHIEAQLTQ--ARHVTSKYSVLHPDHLEI------------------TEDEKTEL------DQFM---------AQYIMLLCSFKDHLQQH----VYYDVTEAMMSCWELEQ--------------------------------------------ALHNLTGVSAGES-----------------------------------------------------------------------------TGATMSEEDED----YDSDYGAYDAHMD-PQD-SGGFGPLVPTESERTLMERVRQEL-KYELK-----------QGYR----ARIVD--VR---EEILRKRRA--GKLPEGTTTVLK------AWWQAHS-KWPYPT------------------EDEKERRIQETGLELKQVNNWFINQRKRNWHSN--PLSSSSELKSKRKK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [533]
lcl|Smo_At4g08150_12_1_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGSSSQSG---DEAAAADSSKQQQQQM---------------------------------------------------------------------------------------------------------------------GMPTWL--------------------------NSALSRQTSSQQQAQDQQQQAWPNPSS-------------SSYTNWLSAAGATSTGVR---RLEQQQASATTNTSPATA-TTTT---TTELLVEQDRKAAVAAAAMLMGAVEADVTSHGSVPGDPDLDEC-AAARYQ-MNA---------GLKADIVTHPLYEQLLE------AHVACLR---------------------------------IATPV-DQLSRIDGQISQ--CHHAIAKYSILANHQ---LLCGS-------------SK-E--EL------DHFM---------AHYVMLLKSFKDQLQHH----VRVHAKEAVMACWELEQ--------------------------------------------SLISLTGAAPGEG-----------------------------------------------------------------------------TGATMSDDEDEQQQPQQEQQQQQQSDSDYWQD-NLGFGPLIPTETERTLMERVRQEL-KHELK-----------QGYR----ARIVD--VR---EEILRKRRA--GKLPGDTTSVLK------AWWHAHS-KWPYPT-------------VEMWQEDEKARLVQETGLELKQINNWFINQRKRNWHHH--PSSSTNS-STKAKCKR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [425]
'gi|14149141|dbj|BAB55660.1| KNOX family class 2 homeodomain protein [Oryza sativa (japonica cultivar-group)]'                       -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQ---GGDHGGMEMGVGSFTGGGGGGECSSSSATAAAAA---AAAAAA-AAAEAE-ERQ---------LLKGEIAVHPLCEQLVA------AHVGCLR---------------------------------VATPI-DHLPLIDAQLAQ--SSGLLHSYAAHHRPF----LSPH-------------DK-Q--EL------DSFL---------AQYMMLLCSFREQLQQH----VRVHAVEAVMACREIEQ--------------------------------------------SLQDLTGATLEEG-----------------------------------------------------------------------------TGATMSEDEDETAPML--EGPMDMGS-D-GHD-LMGFGPLMPTDSERSLMERVRQEL-KIELK-----------QGFK----SRIED--VR---EEILRKRRA--GKLPGDTTTILK------QWWQQHS-KWPYPT------------------EDDKAKLVEETGLQLKQINNWFINQRKRNWHNN--SQT-STL-KSKRKR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [314]
lcl|Smo_At4g08150_5_2_unnamed_protein_product                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?FNASTAA---ASDTRHAGTTTSSTAITIATAGSTKDQAATDATVSRARSRQHDDDG--------------DGGVEDEDDEEEQAVEAGGGRRREEDGGGRDQREQALDEGGDQDDQGGDSRNPSLLLLRGKNHKAGGGGGLAPSGPTWL---SNAVMPRQPSPSPVAAAGAPNYSQWLAMPQPQVTSTDLGEQSHDAAAAAA-------------AAAKGFLEH------------------------LHGDTANSGGG---GGGDMVAEEQ---------------------------GGGGGG-MDSKLW-QSA---------RLKADLVTHPLYEQLLS------AHISCLR---------------------------------TATPV-DQLPKIDAQLAH--SSQVAAKYSILAANE---QGLSK-------------DK-D--EV------NEFM---------AHYVTLLRSFKDQLQQH----VRVHAMEAVVACWELEQQREEEEEEEEEEEEEASITQSHDLKAPPFSSKRENSRRVPAFSTAFSSVPGVSPGEG-----------------------------------------------------------------------------TGATMSEDEDDQ--QADSDSGYYDAGMD-GHD-FTGFGPLIPTETERTLMERVRHEL-KIELK-----------QGYK----AKIND--VR---EEILRKRRA--GKLPGDTTSVLK------TWWHAHS-KWPYPS------------------EDDKARLVQETGLELKQINNWFINQRKRNWHSN--PSSSTSL-KNKRKR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [538]
;
END;


BEGIN CODONS;
	CODESET  * UNTITLED = Universal: all ;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
	EXSET * UNTITLED  =  1-1069 1073-1081 1099-1104 1112-1144 1150 1163-1164 1170-1206 1209-1214 1218-1227 1245-1254 1266-1311 1316-1403 1405-1406 1409-1450 1457 1463-1473 1478-1481 1487-1488 1491-1494 1503-1504 1517-1522 1530 1537-1554 1588-1589 1593 1597 1599-1965;
END;


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