#NEXUS [MacClade 4.08 registered to Tomoaki Nishiyama, National Institute for Basic Biology] BEGIN DATA; DIMENSIONS NTAX=9 NCHAR=2056; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000 2010 2020 2030 2040 2050 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|15235405|ref|NP 192165.1| LD (LUMINIDEPENDENS); transcription factor [Arabidopsis thaliana] >gi|2262149|gb|AAC78261.1| LUMIN' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDAFKEEIEIGSSVESLMELLDSQKVLFHSQIDQLQDVVVAQCKLTGVNPLAQEMAAGALSIKIGKRPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRKQVRLSREKVVMSNTHALQDDGVPENNNATNH------------------------------------------------------------------VEPVPLNSIHPEACSISWGEGETVALIPPEDIPPDISDSDKYFVENIFSLLRKEETFSGQVKLMEWIMQIQDASVLIWFLSKGGVLILTTWLSQAASEEQTSVLLLILKVLC--HLPLHKASPENMSAILQSVNGLRFYRISD------------ISNRAKGLLSRWTKLFAKIQAMKKQNRNSSQIDSQSQLLLKQ-----------------------------------------------------------------------------------------------------------------------------------------------------SIAEIMGDSSNPEDILSLSNGKSENVRRIESSQGPKLLLTSADDSTKKHMLGSNPSYNKERRKVQMVEQPGQKAAGKSPQTV--------------------------RIGTSGRSRPMSADDIQKAKMRALYMQSKNSKKDPLPSAIGDSKIVAPEKPLALHSAKDSPPIQNNEAK----------------------------------------------------------------------------------------------------------TEDTPVLSTVQPVNGFSTIQPVNGPSAVQPVNGPLAVQPVNGPSALQPVNGPSAVIVPVQADEIKKPSTPPKSISSKVGVMMKMSSQTILKNCKRKQIDWHVPPGMELDELWRVAAGGNSKEADVQRNRNRRERETTYQSLQTIPLNPKEPWDREMDYDDSLTPEIPSQQPPEESLTEPQDS---------------LDERRIAAGAATTSSSLSSPEPDLELLAALLKNPDLVYALTSGKPSNLAGQDMVKLLDVIKTGAPNSSSSSNKQVEERVEVSLPSPTPSTNPGMSGWGQEGIRNPFSRQNQV--------------------------------------------------------------------------------GTAVARSGTQLRVGSMQWHQTNEQSIPRHAPSAYSNSITLAHTEREQQQYMQPKLHHNLHFQQQQQQPISTTSYAVREPVGQMGTGTSSSWRSQQSQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSYYSHQENEIASASQVTSYQGNSQYMSSNPGYESWSPDNSPSRNQLNMRGQQQQASRKHDSSTHPYWNQNKRWR------------ [953] 'gi|17433134|sp|Q38796|LUMI ARATH Homeobox protein LUMINIDEPENDENS >gi|424106|gb|AAA19115.1| mutant phenotype: late flowering' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDAFKEEIEIGSSVESLMELLDSQKVLFHSQIDQLQDVVVAQCKLTGVNPLAQEMAAGALSIKIGKRPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRKQVRLSREKVVMSNTHALQDDGVPENNNATNH------------------------------------------------------------------VEPVPLNSIHPEACSISWGEGETVALIPPEDIPPDISDSDKYFVENIFSLLRKEETFSGQVKLMEWIMQIQDASVLIWFLSKGGVLILTTWLSQAASEEQTSVLLLILKVLC--HLPLHKASPENMSAILQSVNGLRFYRISD------------ISNRAKGLLSRWTKLFAKIQAMKKQNRNSSQIDSQSQLLLKQ-----------------------------------------------------------------------------------------------------------------------------------------------------SIAEIMGDSSNPEDILSLSNGKSENVRRIESSQGPKLLLTSADDSTKKHMLGSNPSYNKERRKVQMVEQPGQKAAGKSPQTV--------------------------RIGTSGRSRPMSADDIQKAKMRALYMQSKNSKKDPLPSAIGDSKIVAPEKPLALHSAKDSPPIQNNEAK----------------------------------------------------------------------------------------------------------TEDTPVLSTVQPVNGFSTIQPVNGPSAVQPVNGPLAVQPVNGPSALQPVNGPSAVIVPVQADEIKKPSTPPKSISSKVGVMMKMSSQTILKNCKRKQIDWHVPPGMELDELWRVAAGGNSKEADVQRNRNRRERETTYQSLQTIPLNPKEPWDREMDYDDSLSPEIPSQQPPEESLTEPQDS---------------LDERRIAAGAATTSSSLSSPEPDLELLAALLKNPDLVYALTSGKPSNLAGQDMVKLLDVIKTGAPNSSSSSNKQVEERVEVSLPSPTPSTNPGMSGWGQEGIRNPFSRQNQV--------------------------------------------------------------------------------GTAVARSGTQLRVGSMQWHQTNEQSIPRHAPSAYSNSITLAHTEREQQQYMQPKLHHNLHFQQQQQQPISTTSYAVREPVGQMGTGTSSSWRSQQSQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSYYSHQENEIASASQVTSYQGNSQYMSSNPGYESWSPDNSPSRNQLNMRGQQQQASRKHDSSTHPYWNQNKRWR------------ [953] 'gi|61661318|gb|AAX51265.1| luminidependens [Arabidopsis thaliana]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDAFKEEIEIGSSVESLMELLDSQKVLFHSQIDQLQDVVVAQCKLTGVNPLAQEMAAGALSIKIGKRPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRKQVRLSREKVVMSNTHALQDDGVPENNNATNH------------------------------------------------------------------VEPVPLNSIHPEACSISWGEGETVALIPPEDIPPDISDSDKYFVENIFSLLRKEETFSGQVKLMEWIMQIQDASVLIWFLSKGGVLILTTWLSQAASEEQTSVLLLILKVLC--HLPLHKASPENMSAILQSVNGLRFYRISD------------ISNRAKGLLSRWTKLFAKIQAMKKQNRNSSQIDSKSQLLLKQ-----------------------------------------------------------------------------------------------------------------------------------------------------SIAEIMGDSSNPEDILSLSNGKSENVRRIESSQGPKLLLTSADDSTKKHMLGSNPSYNKERRKVQMVEQPGQKAAGKSPQTV--------------------------RIGTSGRSRPMSADDIQKAKMRALYMQSKNSKKDPLPSAIGDSKIVAPEKPLALHSAKDSAPIQNNEAK----------------------------------------------------------------------------------------------------------TEDTPVLSTVQPVNGFSTI---------QPVNGPLAVQPVNGPSALQPVNGPSAVIVPVQADEIKKPSTPPKSISSKVGVMMKMSSQTILKNCKRKQIDWHVPPGMELDELWRVAAGGNSKEADVQRNRNRRERETTYQSLQTIPLNPKEPWDREMDYDDSLTPEIPSQQPPEESLTEPQDS---------------LDERRIAAGAATTSSSLSSPEPDLELLAALLKNPDLVYALTSGKPSNLAGQDMVKLLDVIKTGAPNSSSSSNKQVEERVEVSLPSPTPSTNPGMSGWGQEGIRNPFSRQNQV--------------------------------------------------------------------------------GTAVARSGTQLRVGSMQWHQTNEQSIPRHAPSAYSNSITLAHTEREQQQYMQPKLHHNLHFQQQQQQPISTTSYAVSEPVGQMGTGTSSSWRSQQSQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSYYSHQENEIASGSQVTSYQGNSQYMSSNPGYESWSPDNSPSRNQLNMRGQQQQASRKHDSSTHPYWNQNKRWR------------ [944] 'gi|34907170|ref|NP 914932.1| putative flowering-time protein isoform alpha [Oryza sativa (japonica cultivar-group)] >gi|1540878' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MELVPFKPEAGALVESGGG--AHGDSIPAMVAAQQELLHAQVDQLQLLVVAQCRLTGVNPLAQEMAAGALSIKIGKKPRDLLNPKAVKSMQSLFAMKDTIGKKETREISASFGVTVTQVREFFASQRTRVRKFVRLSREKALRIESSKAPDNVCSISTEQTPVDIEAHAQVIEPLRTLEP-------------------LEAQQISLPHLVVPQISLQLPVVLQSCAIPVAPIG--VMQPTEAKTNPDPIQKET--KQEEV-AGVESEDKKFLESIFVLMRKENTFSGQVKLMESILQINNVTVLSWFLTMGGLAIVSTWLGQAVTEEQTTVILVVFKVLL--HLPLHKALPAHMSTVLQTINRLRFYRTQD------------ISSKARNLLSRLSKVLVRSQALKKSQKDLICKQRISEILRDE--------------------------------------------------------------------------------------------------------------------------------------------------------SWKSEVDITEDILALTDDASES-RMPEPRKTPLLLTASADESNKKSSLQTKSK---EKRKVLLVEHPNRKAAGKNVNPV--------------------------RSTSTNNSRPLSADDIQKAKMRAMFMQEKYGKVDTSKVI---------EKPHMMEIQKPSGLVDSNVPL-------------------------VPRTPLTSIIKQP--------------------------------------------------------------------------------------------------------------------------VDPSPSTSKQSTLSPPDKPEIAVSLKLNVTAKENFIEKLDSKRVIWQIPPEVWIDPAWSLGAGENSKEFEVQTQRNRREKETFYASLKDIPLNPKGPWDVEMDFDDSLTPEIPIEQPPDADAMETDSVSTAPPNIVVPVVDKQIGSTSSVSPAVAAGANGATSEPDLELLAVLLKNPQLVFALTSNQGGTLPSEQTVALLDMLKQTGLGLSELVNSLANNSGVQKEPESGPEAIPASLPSPTPP-----------KDLIARDGWSSEFPSQVRTQNLQHAHLPNRANAPPVASSVQQSFSNVVSSLPSQPYA-SASALPAQTRTNM-TSLPQSMISVNPSTQHVAPMNNLLSRATVHQH-TQSYALTSDPVAVAVHHQPAVNKLAHEVQSISHPAV-SHSSVAESHA-SYTSYTWQSSVATIAATGRNATPDRWAAPARTTNSFNAAPSNSNHVTYPNQNAYSNHSTQATTYNSYGSAPVSSHSLHPGQGLDRNGYTHAA--EYQTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MARDALWRNSRSPELGAGAVYGS---SSQGYVPEPSRQWNYG---QQSYNPEPYSRQWSSGQQSY-NTVTAEPSRQWSSGQQSYSNPAEPSRQWSSSAHAQPSYNPEPSRPWNSGHQSQNPEASRQWSHHHGKQE-RYNPTDGRNSYDQHWRR [1168] 'gi|5805319|gb|AAD51942.1| flowering-time protein isoform alpha [Zea mays]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MELVLVKPAAGALVEVGSGSVAGAGSIPAMVAAQQEILHEQVDQLQRLVVAQCRLTGVNPLAQEMAAGALSIKIGKRPRDLLNPKAVKCMQSLFALKDILGKKETREISLLCGVTVTQVREFFTVQRSRVRKFVRLSQEKALRIETPKEQDNSYSINTEQIPPDIEAQAEVIEPLRTLEPVVLQSFLQPTCVPQISSQSMELQQSDLQHMEVFQNSLQQAEAQHNIAAPIMPSGAMVMQPTDAKISSDSVQKEV--KQEGVHSGVASEDKKFLESIFALMQKEETFSGQVKLMEWILQINNVTVLSRFVTMGGLTIMSTWLSQAAIEEQTSVIHVIFKVLL--HLPLHKALPVHMSVVLQTINKLRFYRTQD------------ISSRARNLLSRLSKVLVRIQALKKPQKDLICKQRISEILRDE--------------------------------------------------------------------------------------------------------------------------------------------------------SWKSEVDITEEVLALTDGANES-RKPEPRKTPMLLTASAIETNKRSSVQTKSK---QKRKVLLVEQPNKKATWKNANSV--------------------------RNTSTNNSRPLSADDIQKAKMRAMFMQEKRGKIDINKLS---------DKPQAMDTKKAAGLVNSNPSA-------------------------MPISPHTS-AAQP--------------------------------------------------------------------------------------------------------------------------VDPSPSTSKQSTDPQPDNTEISGGLKLNIGSKNNVIKKLDCKKVLWQIPPAVWIDPSWSVGAGDNSKELEVQTQRNRREKETFYTSQKDVPMNPKDPWDLEMDFDDSLTPEVPIDQVPDVDAMETESVGAA-PSAVAPVKDKQIESASSTSGAVADDEEANT---DYELLTVLLRNPELVFALTSNKGENMPNEQTIALLDTLKQTGLSLSELVNRLGNGAGLPKEPEPEPEPIPASLPSPTPP------------DRTSRAVWIPEHAMQVRAA--PTLHLPSRGSTPPVANAVQQGFSNVVSSLPSQPYAPPVSVLPAQIQANAPPSLPLLAVSVNPPVQHVSPVNNLLNRASVHQHGQQQYALLSDPVATPLHQQAAGSK----------PAVAAHPSLPEPNASSHTAFPWQSNAADMTHAGRNATADPWAA-ARAANSYSTASAST--VPSANQNAYGDQGKQG-AYSSYGFSAASSRPVVPGHGHDRNGYSRSALVEYPWD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GHHQ---RHSRSPDPGVVRDYDTDYGGAQGYSQQPLTQWSAGKVQQQGYNPEP-SRQWSSSQAHQGGYAPAEPSRQWSSSQAHQSYAPELPRQWSSERRGYD--DAEPSRTWSSGQ--QNPEAPRQWS--RGKQDPYYSPSHSRRSYDQHRRR [1175] 'gi|5805320|gb|AAD51943.1| flowering-time protein isoform beta [Zea mays]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MELVLVKPAAGALVEVGSGSVAGAGSIPAMVAAQQEILHEQVDQLQRLVVAQCRLTGVNPLAQEMAAGALSIKIGKRPRDLLNPKAVKCMQSLFALKDILGKKETREISLLCGVTVTQVREFFTVQRSRVRKFVRLSQEKALRIETPKEQDNSYSINTEQIPPDIEAQAEVIEPLRTLEPVVLQSFLQPTCVPQISSQSMELQQSDLQHMEVFQNSLQQAEAQHNIAAPIMPSGAMVMQPTDAKISSDSVQKEV--KQEGVHSGVASEDKKFLESIFALMQKEETFSGQVKLMEWILQINNVTVLSRFVTMGGLTIMSTWLSQAAIEEQTSVIHVIFKVLL--HLPLHKALPVHMSVVLQTINKLRFYRTQD------------ISSRARNLLSRLSKVLVRIQALKKPQKDLICKQRISEILRDE--------------------------------------------------------------------------------------------------------------------------------------------------------SWKSEVDITEEVLALTDGANES-RKPEPRKTPMLLTASAIETNKRSSVQTKSK---QKRKVLLVEQPNKKATWKNANSV--------------------------RNTSTNNSRPLSADDIQKAKMRAMFMQEKRGKIDINKLS---------DKPQAMDTKKAAGLVNSNPSA-------------------------MPISPHTS-AAQP--------------------------------------------------------------------------------------------------------------------------VDPSPSTSKQSTDPQPDNTEISGGLKLNIGSKNNVIKKLDCKKVLWQIPPGIFLLCAPQFAILLNVE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [624] lcl|Smo_LD_11_1_unnamed_protein_product MADAASNEVRDPNLGDAATAAAAAIPTAVRSLLPSAASSAFASSSRVSEAGDAVVRDGQGRSFSVPARMGLSCSMELPGISFEDSSAAPASLLGSANSLENSGVTSVDCSSLAGTSNGDLESIPGLVTEGHSSMELERSLNQSAVEGAFTYECMDASSPDPHHDYQEALGSYQQSEGLFPAAGASDDSTSPSLAQGSCAVNSAFFEASGSVELETRSSPVDGTQSASAALVRAVTLLDPSSPTAVKRSKDLIASTRSSIPGEKRAAVPPKKPADVE--KEEEAMQLPSLQELQEKLGAQRKVFESQVDELQSLLKVQYSLTGANPLYLEMGTSVLGPRAVKRPEDSLLPEAQRLLRDVFALKDTVTKKEVLELSALTGAARTHVNDFFTGQQSRVKRLIQMATDGTGKVDVSSTAEYTQSQFFPTNTSSLT---------------------------------------------------------------------------------------------------TLSSLEAFEKLLDHMRAEKSFTGQSNLLQLILEADFVPGLRFFLENGGLRVLAKWLTQAASEEQTSLVRLILKALL--HLPMIHAIPAHVSPLVQIMTKLRLYFATD------------VASRARTLLAKWSKIFARNGVGKLAVQAAEPGNA---------------------------------------------------------------------------------------SNLICKLLVLTSSVFLPFQLVFQAHLDKA-----------------------------------ETSPVSDAQNAQRAQQNKVLAQPNLKGLDMS-ERPSSSSNLRVFSRRSLQTVDDPVLATQAS------KKKLAEHGKEKRRVVLV-----------EELTATTRRIRDANARKP-SITDKGSRPLSADDIQKAKMRARLLQGSNPNAVNSNRG---------SQ--------------------------------------------AVAPDGSPQESIP--------------------------------------------------------------------------PTAPVQDSALQDLAMPTAPQKVEYFKPVQESPPLKVPTTEYFKPLQEVTPATPPKVPFAEFFKPAPPQELTPSIPLDAPRALQIAELLKRVTPWSIPRVFTVDPQWTVAVGEESKEKEVQSMRVKREVEEFYSDPGLIPENPRDPWDVEPDYDDSLTLQVPLEDAQDKAEGTTIPQAPEPPQAAT--------------------------------------------------------------------------------------------------------------------------ASAPAHDPELLALLLRNPALVSELTSG-VKPDSTLKPLQPVQ------------------------------------------AGGVASLLHGIQQQQQQQPPQFQPQGLEL--------------------PYREREQQQQQQPFYLPGSTSSLVVAPQAPNAGDATGRVPWNALEMFQAQAK-GGGGGGGGGVGGYGGSGGGGGGGG----------------------------------------------EISMQMPMEETR---------------------------------------NFGTDITT-----------------------------NIIIMLI-------------------------------IIKAWK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [1110] lcl|Smo_LD_17_4_unnamed_protein_product MADAASNEVRDPNLGDAATAAAAAIPTAVRSLLPSAASSAFASSSRVSGAGDAVVRDGQGRSFSVPARMGLSCSMELPGISFEDSSAAPASLLGSANSLENSGVTSVDCSSLAGTSNGDLESIPGLATEGHSSMELERSLNQSAVEGAFTYECMDASSPDPHHDYQEALGSYQQSEGLFPAAGASDDSTSPSLAQGSCAVNSAFFEASGSVELETRSSPVDGTQSASAALVRAVTLLDPSSPTAVKRSKDLITSARSSIPGEKRAAVPPKKPADVE--KEEEAMQLPSLQELQEKLGAQRKVFESQVDELQSLLKVQYSLTGANPLYLEMGTSVLGPRAVKRPEDSLLPEAQRLLRDVFALKDTVTKKEVLELSALTGAARTHVNDFFTGQQSRVKRLIQMATDGTGKVDVSSTAEYTQSQFFPTNTSSLT---------------------------------------------------------------------------------------------------TLSSLEAFEKLLDHMRAEKSFTGQSNLLQLILEADFVPGLRFFLENGGLRVLAKWLTQAASEEQTSLVRLILKALL--HLPMIHAIPAHVSPLVQIMTKLRLYFATD------------VASRARTLLAKWSKIFARNGVGKLAGQAAEPGNA----------------------------------------------------------------------------------------NLICKLL-----------LVFQAHLDKAGTGLYAKVFGYFTIQAHLCSSSGPSVGPDKKKLKTETSTVSDAQNAQKAQQNKVLAQPNLKGLDMS-ERPSSSSNLRVFSRRSLQTVDDPVLATQAS------KKKLAEHGKEKRRVVLV-----------EELTATTRRIRDANARKP-SITDKGSRPLSADDIQKAKMRARLLQGSNPNAVNSNRG---------SQ--------------------------------------------AVAPDGSPQESIP--------------------------------------------------------------------------PTAPVQDSALQDLAMPTAPQKVEYFRPVQESPPLKVPTTEYFKPLQEVTPATPPKVPVAEFFKPAPPQELTPSIPLDAPPALQIAELLKRVIPWSIPRVFTVDPQWTVAVGEESKEKEVQSMRVKREVEEFYSDPGLIPENPRDPWDVEPDYDDSLTLQVPLEDGQDKAEGTTIPQAPEPPQAAT--------------------------------------------------------------------------------------------------------------------------ASAPAHDPELLALLLRNPALVSELTSGVVKPDSTLKPLQPVQ------------------------------------------AGGVASLLHGIQQQQQQQPPQFQPQGLEL--------------------PYREREQQQQQQPFYLPGSTSSLVVAPQAPNAGDATGRVPWNALEMFQAQAKGGGGGGGGGGVGGYGGSGGGGGGGGGGFSNLVPPARDFNANANGGNPQLWNRLFSRDGRAFFFFFFIVFSGAPSMAMAMAKNRVRRKMCDRVEELEEVDRHPLLVHHRRRRPAPRKFASSLPNFSPARSSSAKNSGSGNGASSSILSCVGLSGEGKRGKNLVTLVVGEEERAFRVEPQILDHGVVQCLLEKTTRCEAIDREWREAEEIEEEGDSALFAALDGSSVRRSWSMDHHHQRHRHPHRRVIRVDCDAILFEHILWLLGRDDPSLRHLNVDELMEFYS--------------------------------------------------------------------------------------------------------------------------------------------------------- [1359] lcl|Ppa_LD_5_1_unnamed_protein_product --------------------------------------------------------------------------------------------------MEALQSVATAGESLGSPPLPPDTSAWPELVEEQVFFVKKVLPTWGMQEVEMANGIGDAEGMEMEMDMKQGEGMESAVACEAVEFEDLFANPIEQGSNLEFRVSRVSVGGSEVMDLGGVVCEGGEGEIGIGNEVSEVYAVECGENLVKEELSEIEVKVEPPAIDVKEVKNEIGSSEGAS--EEIKLEEEIDSSVIMNRLELQTKLVNSHVEELKRIAILQYRLTGINPLAQELASTVLGTEEGWRTGLGLSSETLRYLHAVFAVKDTLTKKEACDVGIVSGATLSQVREFFSTQRSRVRALVQQYTDEAEARSVEIGEERSNHTPDFPIENDIGFT-------------------------------------------------------------------------------------------------NLTDLDSVELLLVTMRQEKRFSQQEQLLLIILRTEPGLILRRFLEKGGLKVLCAWLINAAAGEQTSVLRQLLNVLVLSHLPMSCAIPLQVSALLQPVNKLRFYFVQGKWFVCGMPSKIYVANHARILMSKWSKLFMNKVENGLADSAGLGSTEREKADALRRVKKRVRDAGATMKSVEGGAGKNNAAELVKSQLDLAQVSVKAHSSGEGKFSSGLTHGAARSAGGKILNSKLNMKPKNVVKEVLNYNTSMMKALSGMQSNIKKSVPRKETLQPQNAMKPCVSNTSVADEIAVNQAPGGEAQIPISGSSSSSQSNSSQVTKARVTSMTDEDPKTAA---KAAIVTSNVRGFSNIPVSETANIATPVS------RRRPLADPSSEQKERRKVLPVDDSGNGN--------RWRESTTRRPVIEVGKTSRPLSADEIRKAKLRARIMQQPSSGFSGNKQL---------NAPDQIGSRGKPKPVGDGWSLDRYASMQVMDGSGKSSQICSGVSLVRPTSFNADTASAPRLILDDKTFDELLTEQARENDARKLEHTSCTQKKRNHVDSLEEGIEVTGNYQEINLPEGGSDPCVCTYSEMANKVDSGDQPTSITVDREPRSPSIVDALRGDSVDLVSDVVEDFDVRSDSVKTSPEDLTTDVAAEGLLEATPMETNLRPASASEVVNAKSVEPRVLPWVVPPVLNLNPTWGVVAGDTSKEQGVQAARVKREEEVVYSDLLFVPDNPRDLWDEEPVYDDTLTPEIPVEVSEISSSKPSSPNNAVAVKDAGSNPLTDGTASAGEISGGPSIANTNTFAAAQQLGDAASGHDPNLLALLLSNPALVSQLALQQKEGGSLAGLSALLGLGKMEDLARSADPTHAGGVLSHPTNISNLLGV-----------PQLQDQVPAMTDFKGCQPL-------STSGVVSFPETNSEPVRTAE----------------------------------------------DKLGAVVTVPNWEVPSWAQPSPPPAPMIGLIPHSQGSSNVPLPHIGSVPQDFSSLGPPSASTAYNGSFQKLPNVPYTWAPSNTQVMHTTANQFDSSVGRGRVPVLSHIVNGASGMPNVVNDATVSSGVQPPVFGQVAQFNSVGWPPHG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRPSTVVHRNVSSHPVNSSIRGNVSSWTPHSSTTHGYPDVHRRLPEPPPLWGRNPMPATQSVPAPPPPYSSHPSSNQYWQQQDPSFRPPPSSHPAHYTRPHHPPAWHQNGSNYGPNR------------------------------------ [1502] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-291 405-536 606-608 637-649 673-955 983-1199 1240-2056; END; BEGIN MacClade; Version 4.0 87; LastModified -1035186561; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '12' '490' '1' all; EditorPosition '46' '6' '969' '1271'; TreeWindowPosition '46' '6' '1131' '1550'; ListWindow Characters closed Geneva '9' '50' '25' '273' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '209' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions 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