#NEXUS [MacClade 4.08 registered to M. Hasebe, NIBB] BEGIN DATA; DIMENSIONS NTAX=5 NCHAR=1586; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|60678546|gb|AAX33635.1| EMBYO FLOWERING 1-like protein [Pisum sativum]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VFGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PII------------------------PFMHTTN-------------------------------------TN------------------------SGKG------------------------------------------------NHYEEITGARDTGKTVEAAEQLGINKTYNEQAAEVS--EQGTLDDIPMEIVELMAKNQYERCLP----DVENRCSIFEKSSNSRNAQMTSGTAVYGKGKMNFLKEGQKEKSKGRPKK--NNMV?R-GENVKPCKRKPNHYFSPFNGSNLGVNNPYPPQPSFGFEVPQSQKKL------------SNEFQFSPMISNQLGSAR?IKFNGNLEERAPSSATLQALGGCRLHKNVL-----QQDN--------EASR-IWASLASNRTSLGYDVSQKVASQPSSNSNMDITSLRS-GAVH--MQNSGRDIDLNYTNINATCQDKQGSRNTGAGVFSRMNGEYSFPCKHNGIEPHQNLRGSLDLYSNETIPAMHLLSLMDAGMQSRTPFNVGVNAQMLNRPSYPGDCNTK-MEI----SSKANGTLK---RQS--SDYYNRSYLSDKSHGCLIGSQTFG--GSS--------SAQHGKKFTKDAGSNDQNSTKFGKKEKMRSSNAPL---QSRFL-----------KQCSLSYNETNTSQQHRLEARGTHTSVQ---------------------------------------------LKITPGV-------------------S [506] 'gi|15239080|ref|NP 196714.1| EMF1 (EMBRYONIC FLOWER 1) [Arabidopsis thaliana] >gi|15430697|gb|AAK98528.1| embryonic flower 1 [A' MGSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKINSISIDLAGA------------------------------------ANEIDMVKCDHFSMRGFVAETRERDLRKCWPFSEESVSLV-------DQQSYTLPTLSVPKFRWWHCMSCIKDI----DAHGPKDCGLHSNSKAIGNSSVIESKSKFNSLTIIDHEKEKKTDIAD--NAIEEKVGVNCENDDQTATTFLKKARGRPMGASNVRSKSRKLVSPEQVGNNRSKEKLNKPSMDISSWKEKQNVDQAVTTFGSSEIAGVVEDTPPKATKNHKGIRGLMECDNGSSESINLA-----------MSGLQRRKSRKVRLLSELLGNTKTSGGSNIRK------EESALKKESVRGRK--RKLLPENNYVSRILSTMGATSENASKSCDSDQGNSESTDSGFDRTPFKGKQRNRRFQVVDEFVPSLPCETSQ--EGIKEHDADPSK--RSTPAHSLFTGNDSVPCPPGTQRTERKLSLPKKKTKK---PVIDNGKSTVISFSNGIDGSQVNSHTGPSMNTVSQTRDLLNGKRVGGLFDNRLASDGYFRKYLSQVNDKPITSLHLQDNDYVRSRDAEPNCLRDFSSSSKSSSGGWLRTGVDIVDFRNNNHNTNRSSFSNLKLRYPPSSTEVADLSRVLQKDA--SGADRKGKTVMVQEHHGAPRSQSHDRKETTTEEQNN-DDIPMEIVELMAKNQYERCLPDKEEDVSNKQPSQETAHKSKNALLIDLNETYDNGI------SLEDNNTSRPPKPCSSNARR-EEHFPMGRQQNSHDFFP-------ISQPYVPSPFGIF--PPTQENR------------ASSIRFSGHNCQWLGNLPTVG------NQNPSPSSFRVLRACDTCQSVP-----NQYR--------EASHPIWPS--S-------MIPPQSQYKPVS---LNINQSTN-PGTL--SQASNNENTWNLNFVAANGKQKCGP-----------NPEFSFGCKHAAGVSSSSSRPIDNFSSESSIPALHLLSLLDPRLRSTTPADQHGNTKFTKRHFPPANQSKEFIELQTGDSSKSAYSTK---QIP--FDLYSKRFTQEPSRKSFPITPPIG--TSSLSFQNASWSPHHQEKKTKR---KDTFAPVYNTHEKPVFASSND---QAKFQLLG----ASNSMMLPLKFHMTDKEKKQKRKAESCNNNASAGPVKNSSGPIVCSVNRNPADFTIPEPGNVYMLTGEHLKVRKRTTFKKKPAVCKQDAMKQTKKPVCPPTQNA [1096] 'gi|15430699|gb|AAK98529.1| embryonic flower 1-like protein [Oryza sativa]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEIVAVDQEGARVVGTNCMLARGGTGAVAPVLELTATPRQDAAAEAGVDEPAQHQCEHFSIRGYVALLQKKDPKFC------SLSRIFHDQKKCDEHKASSSPFSVAKFRRWDCSKCLDKLKTSDNGTAPRTLPAKQNGTSDG-CSITFVRSTFVPASVGSQKVSPSTQSSQGKNADRSTLPKSVQEGNDSKCNAPSGKNG--AAEANTDSPMKDLQGPAQNYDVAANVSEDNTSVDVGALPEVPQITWHIEVNGA--------DQPPSTPKLSEVVLKRNEDENGKTEETLVAEQCNLTKDPNPMSGKER---DQVAEQCNLTKDPKPVSGQKCEQICNEPCEEVVLKRSSKSKRKTDKKLMKKQQHSKKRTAQADVSD---AKLC---------------------RRKPKKVRLLSEIVNANQVEDSRSDEVHRENAADPCEDDRSTIPVPMEVSMD-IPVSNHTV-GEDGLKSSKNKTKRKYSDVVDDGS----SLMNWLNGKK--KRTGSVHHTVAHPAGNLSNKKVTPTASTQHDDENDTENGLD-------TNMHKTDVCQHVSEISTQRC------SSKGKTAGLSKGKTHSAASTKYGGESTRNG-QNIHVLSAEDQCQMETENSVLSHSAKVSPAEHDIQIMSDLHEQSLPKKKKKQKLEVTREKQTMIDDIPMDIVELLAKNQHERQLM-TETDCSDINRIQSKTTADDDCVIVAAKDGSDYAS------SVFDTNSQQKSLASQSTQKELQGHLALTTQESPH-----------------PQ---NF--QSTQEQQTHLRMEEMVTIAASSPLFSHHDDQYIAEAPTEHWG----RKDAKKLTWEQFKA--TTRNSPAATCGAQFRPGIQAVDLTSTHVMGSS--SNYASRQPVIAPLDRYAERA---VNQVHARNFPSTIATMEASKLCDRRNAGQVV--------------------------------------------LYPKESMPATHLLRMMDPSTLASFP--NYGTS--SRNQMESQLHNSQYAHNQYKGSTSTSYGSNLNGKIPLTFEDLSRHQLHDLHRPLRP-HPRVGVLGSLLQKEIANWSENCGTQSGYKLG-VSTGITSHQMNRKEHFEALNSGMFSAKWNALQLGSVSSSAYFLSARNSIAQSWTRGKGKM--------VHPLDRFVRQDICITNKNPADFTTISNDNEYMDY-------------------------------------R [1057] 'gi|56783886|dbj|BAD81323.1| embryonic flower 1-like protein [Oryza sativa (japonica cultivar-group)]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEIVAVDQEGARVVGTNCMLARGGTGAVAPVLELTATPRQDAAAEAGVDEPAQHQCEHFSIRGYVALLQKKDPKFC------SLSRIFHDQKKCDEHKASSSPFSVAKFRRWDCSKCLDKLKTSDNGTAPRTLPAKQNGTSDG-CSITFVRSTFVPASVGSQKVSPSTQSSQGKNADRSTLPKSVQEGNDSKCNAPSGKNG--AAEANTDSPMKDLQGPAQNYDVAANVSEDNTSVDVGALPEVPQITWHIEVNGA--------DQPPSTPKLSEVVLKRNEDENGKTEETLVAEQCNLTKDPNPMSGKER---DQVAEQCNLTKDPKPVSGQKCEQICNEPCEEVVLKRSSKSKRKTDKKLMKKQQHSKKRTAQADVSD---AKLC---------------------RRKPKKVRLLSEIINANQVEDSRSDEVHRENAADPCEDDRSTIPVPMEVSMD-IPVSNHTV-GEDGLKSSKNKTKRKYSDVVDDGS----SLMNWLNGKK--KRTGSVHHTVAHPAGNLSNKKVTPTASTQHDDENDTENGLD-------TNMHKTDVCQHVSEISTQRC------SSKGKTAGLSKGKTHSAASTKYGGESTRNG-QNIHVLSAEDQCQMETENSVLSHSAKVSPAEHDIQIMSDLHEQSLPKKKKKQKLEVTREKQTMIDDIPMDIVELLAKNQHERQLM-TETDCSDINRIQSKTTADDDCVIVAAKDGSDYAS------SVFDTNSQQKSLASQSTQKELQGHLALTTQESPH-----------------PQ---NF--QSTQEQQTHLRMEEMVTIAASSPLFSHHDDQYIAEAPTEHWG----RKDAKKLTWEQFKA--TTRNSPAATCGAQFRPGIQAVDLTSTHVMGSS--SNYASRQPVIAPLDRYAERA---VNQVHARNFPSTIATMEASKLCDRRNAGQVV--------------------------------------------LYPKESMPATHLLRMMDPSTLASFP--NYGTS--SRNQMESQLHNSQYAHNQYKGSTSTSYGSNLNGKIPLTFEDLSRHQLHDLHRPLRP-HPRVGVLGSLLQKEIANWSENCGTQSGYKLG-VSTGITSHQMNRKEHFEALNSGMFSAKWNALQLGSVSSSADFLSARNSIAQSWTRGKGKM--------VHPLDRFVRQDICITNKNPADFTTISNDNEYMDY-------------------------------------R [1057] 'gi|34904282|ref|NP 913488.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]' MPNGLIRKLREELLDKLIAHATFPHPPPQIPVGAAAAAATDAIAWICAPVVAAAWICAPASPVPDGVSPSCLRAVPPPPNRRQTRPSVVAPSPTIDRHIPLLIGCFMEKDLIFMTHGRGVVKADEEVRGSRSARTELKIRGVGLMLVDCGYPPIHVGVDGFMCVRAVLHRMGSNGGRLALLTCSLTKANCLLAMKLFLFKEKQTFELGNIEEAAASSGERSTARRVDRAPPRLRRGCRSKRKPPSCAPLSGLELLASMGTKALIFHVAEEKKIPSFAGILAATFWGNLFLAIILPARISGALIFHELIEVDIYCACLCVDSLLVVVIDMEIVAVDQEGARVVGTNCMLARGGTGAVAPVLELTATPRQDAAAEAGVDEPAQHQCEHFSIRGYVALLQKKDPKFC------SLSRIFHDQKKCDEHKASSSPFSVAKFRRWDCSKCLDKLKTSDNGTAPRTLPAKQNGTSDG-CSITFVRSTFVPASVGSQKVSPSTQSSQGKNADRSTLPKSVQEGNDSKCNAPSGKNG--AAEANTDSPMKDLQGPAQNYDVAANVSEDNTSVDVGALPEVPQITWHIEVNGA--------DQPPSTPKLSEVVLKRNEDENGKTEETLVAEQCNLTKDPNPMSGKER---DQVAEQCNLTKDPKPVSGQKCEQICNEPCEEVVLKRSSKSKRKTDKKLMKKQQHSKKRTAQADVSD---AKLC---------------------RRKPKKVRLLSEIINANQVEDSRSDEVHRENAADPCEDDRSTIPVPMEVSMD-IPVSNHTV-GEDGLKSSKNKTKRKYSDVVDDGS----SLMNWLNGKK--KRTGSVHHTVAHPAGNLSNKKVTPTASTQHDDENDTENGLD-------TNMHKTDVCQHVSEISTQRC------SSKGKTAGLSKGKTHSAASTKYGGESTRNG-QNIHVLSAEDQCQMETENSVLSHSAKVSPAEHDIQIMSDLHEQSLPKKKKKQKLEVTREKQTMIDDIPMDIVELLAKNQHERQLM-TETDCSDINRIQSKTTADDDCVIVAAKDGSDYAS------SVFDTNSQQKSLASQSTQKELQGHLALTTQESPH-----------------PQ---NF--QSTQEQQTHLRMEEMVTIAASSPLFSHHDDQYIAEAPTEHWG----RKDAKKLTWEQFKA--TTRNSPAATCGAQFRPGIQAVDLTSTHVMGSS--SNYASRQPVIAPLDRYAERA---VNQVHARNFPSTIATMEASKLCDRRNAGQVV--------------------------------------------LYPKESMPATHLLRMMDPSTLASFP--NYGTS--SRNQMESQLHNSQYAHNQYKGSTSTSYGSNLNGKIPLTFEDLSRHQLHDLHRPLRP-HPRVGVLGSLLQKEIANWSENCGTQSGYKLG-VSTGITSHQMNRKEHFEALNSGMFSAKWNALQLGSVSSSADFLSARNSIAQSWTRGKGKM--------VHPLDRFVRQDICITNKNPADFTTISNDNEYMDY-------------------------------------R [1385] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-964 969-970 1001-1002 1007 1029-1032 1064-1069 1082-1083 1088 1090 1104-1120 1123-1125 1128-1129 1137-1148 1167-1175 1190-1191 1198-1214 1219 1224-1225 1227-1233 1246-1248 1257 1262-1263 1280-1323 1349-1350 1356-1357 1371 1375-1378 1388-1390 1394-1395 1414 1420-1432 1444-1446 1468-1470 1476-1486 1507-1586; END; BEGIN MacClade; Version 4.0 87; LastModified -1064265539; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '9' '254' '1' all; EditorPosition '52' '5' '403' '1605'; TreeWindowPosition '46' '6' '985' '1630'; ListWindow Characters closed Geneva '9' '50' '10' '273' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets 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