#NEXUS [MacClade 4.08 registered to M. Hasebe, NIBB] BEGIN DATA; DIMENSIONS NTAX=97 NCHAR=1676; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|15240202|ref|NP 201512.1| ALC (ALCATRAZ); DNA binding / transcription factor [Arabidopsis thaliana] >gi|10177598|dbj|BAB1094' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGDSDVGDRLPPPSSSDELSSFLRQILSRTPTAQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSSPPKSTNVSSAETFFPSVSGGAVSS--------------------------------------------------------------------------------------------------------------------------------------------------------VGYGVSETGQDKYAFEHKRSGAKQRNSLKRNI---D-AQFHNLSEK----------------------KRRSKINEKMKALQ--KLIPNSNK-------TDKASMLDEAIEYLKQLQLQVQ----------TLAVMNGLGLN----------------PMRL--PQVPPPTHTRINET------------------------------------------------------LEQDLNLETLL----------------------------------------------------------------------------------AAPHSLEPAKTSQGMCFSTATLL----------------------------------------------------------------------------------------------------------------------------------------------------------------- [210] 'gi|51970054|dbj|BAD43719.1| putative bHLH transcription factor (bHLH073/ALCATRAZ) [Arabidopsis thaliana]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGDSDVGDRLPPPSSSDELSSFLRQILSRTPTAQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSSPPKSTNVSSAETFFPSVSGGAVSS--------------------------------------------------------------------------------------------------------------------------------------------------------VGYGVSETGQDKYAFEHKRSGAKQRNSLKRSI---D-AQFHNLSEK----------------------KRRSKINEKMKALQ--KLIPNSNK-------TDKASMLDEAIEYLKQLQLQVQ----------TLAVMNGLGLN----------------PMRL--PQVPPPTHTRINET------------------------------------------------------LEQDLNLETLL----------------------------------------------------------------------------------AAPHSLEPAKTSQGMCFSTATLL----------------------------------------------------------------------------------------------------------------------------------------------------------------- [210] 'gi|21536863|gb|AAM61195.1| unknown [Arabidopsis thaliana]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGDSDVGDRLPPPSSSDELSSFLRHILSRTPTAQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSSPPKSTNVSSAETFFPSVSGGAVSS--------------------------------------------------------------------------------------------------------------------------------------------------------VGYGVSETGQDKYAFEHKRSGAKQRNSLKRNI---D-AQFHNLSEK----------------------KRRSKINEKMKALQ--KLIPNSNK-------TDKASMLDEAIEYLKQLQLQVQ----------TLAVMNGLGLN----------------PMRL--PQVPPPTHTRINET------------------------------------------------------LEQDLNLETLL----------------------------------------------------------------------------------AAPHSLEPAKTSQGMCFSTATLL----------------------------------------------------------------------------------------------------------------------------------------------------------------- [210] 'gi|18419937|ref|NP 568010.1| SPT (SPATULA); DNA binding / transcription factor [Arabidopsis thaliana] >gi|11245494|gb|AAG33640.' -----------------------------------------------------------------------------------------MISQREEREEKKQRV-------------------------------------------------------------------------------------------------------------------------------------MGDKKLISSSSSSSVYDTRINHHLHHPPSSSDEISQFLRHIFDRSSPLP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SYYSPATTTTTASLIGVHGSGDPHADNSRSLVSHHPPSDSVLMSKRVGDFSEVL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IGGGSGSAAACFGFSGGGNNNNVQGNS------------------------------------------------------------------------------------------------------------------------------SGTRVSSSSVGASGNETDEYDCESE------EGGEAVVDEAPSSKSGPSSRSSSKRCR---A-AEVHNLSEK----------------------RRRSRINEKMKALQ--SLIPNSNK-------TDKASMLDEAIEYLKQLQLQVQ----------MLTMRNGINLH----------------PLCL--PGTTLHPLQL------------------------------------------------------SQIRPPEATNDPLLNHTNQFASTSNAPEMINTVASSYALEPSIRSHFG-------------------------------------------------PFPLLTSPVEMSREGGLTHPRLNIGHSNANITG------EQALFDG-----QPD--------LKD-----------------------RIT--------------------------------------------------------------------------------------------- [373] 'gi|4006880|emb|CAB16798.1| putative protein [Arabidopsis thaliana] >gi|7270642|emb|CAB80359.1| putative protein [Arabidopsis th' -----------------------------------------------------------------------------------------MISQREEREEKKQRV-------------------------------------------------------------------------------------------------------------------------------------MGDKKLISSSSSSSVYDTRINHHLHHPPSSSDEISQFLRHIFDRSSPLP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SYYSPATTTTTASLIGVHGSGDPHADNSRSLVSHHPPSDSVLMSKRVGDFSEVL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IGGGSGSAAACFGFSGGGNNNNVQGNS------------------------------------------------------------------------------------------------------------------------------SGTRVSSSSVGASGNETDEYDCESE------EGGEAVVDEAPSSKSGPSSRSSSKRCR---A-AEVHNLSEK----------------------RRRSRINEKMKALQ--SLIPNSNK-------TDKASMLDEAIEYLKQLQLQVQ----------MLTMRNGINLH----------------PLCL--PGTTLHPLQL------------------------------------------------------SQIRPPEATNDPLLNHTNQFASTSNAPEMINTVASSYALEPSIRSHFG-------------------------------------------------PFPLLTSPVEMSREGGLTHPRLNIGHSNANITDHLRIVFESLILDGFGYVNYPDKLLEKFSILQDGFGIFKVDHVLLVSLVLKLIIYNTIF--------------------------------------------------------------------------------------------- [415] 'gi|54306640|gb|AAV33474.1| basic helix-loop-helix protein [Fragaria x ananassa]' ------------------------------------------------------------------------------------------------------MG-------------------------------------------------------------------------------------------------------------------------------------DTFEYNYQNNSSCSSSAPASSVSVAQSHSSTDEISLFLQQILVRSSSLTGQQFLFSSSPAGYALPENL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSPSNDSFVGGVIRGVDVSTAVVTASG--------------------------------------------------------------------------------------------------------------------------------PNVSSSSVGASENEADEYDCESE---------EGLEALVEEAAVKSGGRSSSKRSR---A-AEVHNLSEK----------------------RRRSRINEKMKALQ--NLIPNSNK-------TDKASMLDEAIEYLKQLQLQVQ----------MLSMRNGMSLH----------------PMCL--PGASQFSQIR--------------------------------------------------MDFGGEENRPVHLNMSGILNMNQDPSTQNLYNPNQSLCTRFVKCSQF------------------------------------------------------RRCIWIGSIYSGSLGTLSAPKLIQGNLQ------------------------------------------------------------------------------------------------------------------------------------------------------------ [298] 'gi|55296133|dbj|BAD67851.1| basic helix-loop-helix protein SPATULA-like [Oryza sativa (japonica cultivar-group)]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDEQRGRGGFDELVLLHQQQEQRRRREQQQEEEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEEVRRQMFGAVVGGLAAFPAAAAALG----------------------------------------------------------------------------------------------------------------------------------------------QQQVDCGGELGGFCDSEAGGSSEPEAAAGARPRGGSGSKRSR---A-AEVHNLSEK----------------------RRRSKINEKMKALQ--SLIPNSNK-------TDKASMLDEAIEYLKQLQLQVQ----------MLSMRNGVYLN----------------PSYL--SGALEPAQAS---------------------------------------------QMFAALGGNN---VTVVHPGTVMPPVNQSSGAHHL-----------------------------------------------------------------------FDPLNSPPQNQPQSLILPSVP----------------------------------------------------------------------------STAIPEPPFHLESSQSHLRQFQLPGSSEFHKILFLHVLLSVKDGVSWRDNAKAPPIITSRKSARKRDELHQERIIHVEHQ------- [315] lcl|Smo_ALC_14_1_unnamed_protein_product ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLPPKAHKVNSSLNFSHFSRPAVIAKASLHTLGKCSTSITNHLQMQFKKNDAAVAVAPAAASNGVVEGSIGSAPTQRSAVAQEQSSEAQQSVSQSSLPSLISCTSRKEAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTRGKDSQPSSSATAADGNEQTLTSSS----------------------------------------------------------------------------------------------------------------------GGSGHSADGAKGSNAKGKRKVKSVDESADCQSE----------DVEGESVDVKKAPPARTSSKRSR---A-AEVHNLSER----------------------RRRDRINEKMKALQ--ELIPNSNK-------TDKASMLDEAIEYLKMLQLQLQ----------MMAMRTGLSLP----------------PMII--PAGMQHLQMP--------------------------------------------QMPTLGMGMGM---GMGVMGMGVMDSVGRPLTSGPMPLNMT------------------------------------------------------------------MDMYHACMLQQQMQLQLRQQI---------------------------------------------------------------QQQQQQQHIQQQQQQQIQQQQQQQQQQQQQQQQQQQQQQQQQQQQKT?---------------------------------------------------- [379] lcl|Smo_ALC_35_1_unnamed_protein_product -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MARTGSRDSATDGVGIHPAGASQWADPAKKPRHLAMLPPKAHKVNSSLNFSHFSRPAVIAKASLHTLGKCSTSITNHLQMQFKKNDAAVAVAPAAASNGVVEGSIGSAPTQRSAVAQEQSSEAQQSVSQSSLPSLISCTSRKEAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTRG-NCQPSSSATAADGNEQTLTSSS----------------------------------------------------------------------------------------------------------------------GGSGHSADGAKGSNAKGKRKVKSVDESADCQSE----------DVEGESVDVKKAPPARTSSKRSR---A-AEVHNLSER----------------------RRRDRINEKMKALQ--ELIPNSNK-------TDKASMLDEAIEYLKMLQLQLQ----------MMAMRTGLSLP----------------PMII--PAGMQHLQMP--------------------------------------------QMPTLGMGM?----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [316] 'gi|15451582|gb|AAK98706.1| Putative SPATULA [Oryza sativa]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGLDRCESE----------EALGSSESEQPTRPARPRGKRSR---A-AEVHNLSEK----------------------RRRSRINEKMKALQ--SLIPNSSK-------TDKASMLDDAIEYLKQLQLQVQ----------MLSMRNGLYLP----------------PVNL--SGAPEHLPIP---------------------------------------------QMSAALDQNS---AKASDPSVVLQPVNQTSGALLPFELASQHKPLFLPGVPNATALEPRFLVESSRSNLQSLRFTEPA----------------------------EMIYPDEMMLKHRLTSASESTIVPGTDEKSVRQNTYMMNADRFDRYALSKDQLQHIMPKNTESVLDMPHLQRILTKVLIVSDYKLTIQLPILDRLQTSDTKVRVEGRIKVNP------------------------------------------------------------------------ [298] 'gi|56784181|dbj|BAD81566.1| putative BP-5 protein [Oryza sativa (japonica cultivar-group)]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAPAVHDFASGFGATTQDNGDDDTVPWIHYPI--IDDEDAAAPAALAAADYGSDFFSELQAAAAAAAAAAPPTDLASLPASNHNGATNNRNAPVATTTTREPSKESHGGL----------------------------------------------------SVPTTRAEPQPQPQLAAAKLPRSSGSGGGEGVMNFSLFSRPAVLARATLESAQRTQGTDNKASNVTASNRVESTVVQTASGPRSAPAFADQRAAAWPPQPKEMPFASTAAAPMAPAVNLHHEMG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDRAGRTMPVHKTEARKAPEATVATSS-----------------------------------------------------------------------------------------------------------------------VCSGNGAGSDELWRQQKRKCQAQAECSASQDD------------DLDDEPGVLRKSGTRSTKRSR---T-AEVHNLSER----------------------RRRDRINEKMRALQ--ELIPNCNK-------IDKASMLDEAIEYLKTLQLQVQ----------MMSMGTGLCIP----------------PMLL--PTAMQHLQIP---------------------------------------PMAHFPHLGMGLGYGM---GVFDMSNTGALQMPPMPGAHFPCPMIPGASPQGLGIPGTSTMPMFGVPGQTIPSSASS-----------------------------------VPPFASLAGLPVRPSGVPQVSGAMANMVQDQQQGIANQQQQCLNKEAIQGANPGDSQMQIIMQ-------------------------------GDNENFRIPSSAQTKSSQFSDGTGKGTNARERDGAET----------------------------------------------------- [565] lcl|Ppa_ALC_18_1_unnamed_protein_product --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEREQSNGTEDSRWQVAPGLSPKKDRDCVVS-GDCKNSPADQETCRPSVVISDA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPASSEKGMSRITHHPDIQEPTITSSS----------------------------------------------------------------------------------------------------------------------GGYGTSTDRLKEAATSNKRKSNEREETECQSED----------GEDESVDTKKPVTGRGSTAKRSR---A-AEVHNQSER----------------------RRRDRINEKMRALQ--ELIPNSNK-------TDKASMLDEAIEYLKMLQLQLQ----------MMSIRTGMTLP----------------PMVM--PASLQQHMQM-------------------------------PQIAAMPSMGMGMGMVPMNLGHGMMMDMGVAAQGRAMMPLQSHVGPSLNGAIASASSMADVHDPRYQTSGV-------------------------------------------------MDPYNAYMTRQHQPMQMTQVRPRSNVVQCDM--------------------------------------------------------------------------------------------------------------------------------------------------------- [317] 'gi|51854388|gb|AAU10768.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] >gi|50511445|gb|AAT77368.1| hypothetic' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLRGNDTGSDLAELLWDNGAPAPLRPPPPPPFQPFTCSAAATTSPPAHDYL-------------------------------------------------------------------------------------------------------FIKNLMRGGGAANHHHHDDDDDDDDDVPWLHYHPVVDDDDDADADTAPLPPDYCAALLSGLSDHLPPPAAAASRVDPDPCSSSHGAVVPSTSAAAAKQART---------------------------------------------------------------------------------------SGGGGGGVMNFTFFSRPLQQRPSGGETASASASAAATSTVPVESTVVQAATNRLRSTPLFSDQRMAWLHPPKPSPRAAAPPPPPPLAPTTRHRLDTAAATATV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AQRLPPSEARAPDAPPPAATATATTSS--------------------------------------------------------------------------------------------------------------------------VCSGNGDRRQLNWRDSHNNQSAEWSASQD---------ELDLDDELAGVHRRSAARSSKRSR---T-AEVHNLSER----------------------RRRDRINEKMRALQ--ELIPNCNK-------IDKASMLEEAIEYLKTLQLQVQ----------MMSMGTGMFVP----------------PMML--PAAAAAMQHH-------------------------------------------------------------HMQMQQMAGPMAAAAHFPHLGAAAAMGLAGFGMPAAAQFPCPMFPAAPPMSMFAPPPPPP------------------------------PFPHAAATAVEQTPSPPGAADAGNAPAVKQA--------------------------------------------------------------------------------------------------------------------------------------------------------- [505] lcl|Ppa_ALC_23_1_unnamed_protein_product ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?QRSSGTQQELKTQPGVTEREQSNGIKDCRWQSAPSLSPKKDRDYVVSEGDCKKTFNDQETYRISGVTSDA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLASSEKGVSHVTQHPDIQEPTITSSS----------------------------------------------------------------------------------------------------------------------GGCGTSAERPKGFATSNKRKSSEREDTECQSED----------GEDESIDTKKPVTGRGSTAKRSR---A-AEVHNQSER----------------------RRRDRINEKMRALQ--ELIPNSNK-------TDKASMLEEAIEYLKMLQLQLQ----------MISMRTGMTLP----------------PMVV--PGGLQQHMQM-----------------------------------------------------------------------PQMPGPSLNGSMASASSMVDVHDPRYLASGV-------------------------------------------------IDPYNAYLARQHQPMQMTQPL---------------------------------------------------------------NIDKYNAYLMQQHQLQQQQQHHHHQQQHPQHQQHQQTSNMNG?--------------------------------------------------------- [328] 'gi|34902556|ref|NP 912624.1| P0498A12.24 [Oryza sativa (japonica cultivar-group)]' MRTATNCSSAYTCPAPEKCQSLVEVCGTCVTRGGAALFIIEWKQGLAVVLLLLPCCECETVSVVLEPSHHRSASHTARQSCCHARTWSTWAGSPPSKSCFGSSNHRRFCLSRSSLHLHAPQTRTNQTNPRGTAVTRHTVLAIVSLMSCHASALRSALSRRMPELDLAGEYHQVHTSAAAAAAAASAMPTAGHGMEEYPVVFIMMHAAIHRSVCERKRELTSRCPAGRGGEHGFAFGWSSRLCTRSTAANSSFLDFFTLSPRTAQMSDGNDFAELLWENGQAVVHGRKKHPQPAFPPFGFFGGTGGGGGGSSSRAQERQPGGIDAFAKVGGGFGALG--------------------------------------------------------------------------------MAPAVHDFASGFGATTQDNGDDDTVPWIHYPI--IDDEDAAAPAALAAADYGSDFFSELQAAAAAAAAAAPPTDLASLPASNHNGATNNRNAPVATTTTREPSKESHGGL----------------------------------------------------SVPTTRAEPQPQPQLAAAKLPRSSGSGGGEGVMNFSLFSRPAVLARATLESAQRTQGTDNKASNVTASNRVESTVVQTASGPRSAPAFADQRAAAWPPQPKEMPFASTAAAPMAPAVNLHHEMG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDRAGRTMPVHKTEARKAPEATVATSS-----------------------------------------------------------------------------------------------------------------------VCSGNGAGSDELWRQQKRKCQAQAECSASQDD------------DLDDEPGVLRKSGTRSTKRSR---T-AEVHNLSER----------------------RRRDRINEKMRALQ--ELIPNCNK-ACYVLQIDKASMLDEAIEYLKTLQLQVQ----------MMSMGTGLCIP----------------PMLL--PTAMQHLQIP---------------------------------------PMAHFPHLGMGLGYGM---GVFDMSNTGALQMPPMPGAHFPCPMIPASS---------------------------------------------------------------VPPFASLAGLPVRPSGVPQVSGAMANMVQDQQQGIANQQQQCLNKEAIQGANPGDSQMQIIMQRFLVQIMMNYYDTVVYAYKFVSLVRSQDVIFKSVSNYVCPDHLQYGEIVDSDV-------------------------------------------------------------------- [895] 'gi|30678541|ref|NP 191916.3| DNA binding / transcription factor [Arabidopsis thaliana] >gi|26449558|dbj|BAC41905.1| putative bH' ---------------------------------------------------------------------------------------MS----------------------------------------------------------------------------------------------------------------------------------------------------QCVPNCHIDDTPAAATTTVRSTTAADIPILDYEVAELTWENGQLGLHGLGPPRVTASSTKYSTGAGGTLESIVD-------------------------------------------------------------------------------------------------------------------QATRLPNPKPTDELVPWFHHRSSRAAMAM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DALVPCSNLVHEQQSKPGGVGSTRVGS---------------------------------------------------------------------------------------------------CSDGRTMGGGKRARVAPEWSGGGSQRLTMDTYDVGFTSTSMGSHDNTIDDHD----SVCHSRPQMEDEEEKKAGGKSSVSTKRSR---A-AAIHNQSER----------------------KRRDKINQRMKTLQ--KLVPNSSK-------TDKASMLDEVIEYLKQLQAQVS----------MMSRMNMP-------------------SMML--PMAMQQQQQL-------------------------------------------QMSLMSNPMGLG---MGMGMPGLGLLDLNSMNRAAASAPNIHANMMPNPFLPM------------------------------------NCPSWDASSNDSRFQSPLIPDPMSAFLACSTQPTTMEAYS---------------------------------------------------------------------------------RMATLYQQMQQQLPPPSNPK-------------------------------------------------------------- [399] 'gi|20127012|gb|AAM10933.1| putative bHLH transcription factor [Arabidopsis thaliana]' ---------------------------------------------------------------------------------------MS----------------------------------------------------------------------------------------------------------------------------------------------------QCVPNCHIDDTPAAATTTVRSTTAADIPILDYEVAELTWENGQLGLHGLGPPRVTASSTKYSTGAGGTLESIVD-------------------------------------------------------------------------------------------------------------------QATRLPNPKPTDELVPWFHHRSSRAAMAM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DALVPCSNLVHEQQSKPGGVGSTRVGS---------------------------------------------------------------------------------------------------CSDGRTMGGGKRARVAPEWSGGGSQRLTMDTYDVGFTSTSMGSHDNTIDDHD----SVCHSRPQMEDEEEKKAGGKSSVSTKRSR---A-AAIHNQSER----------------------KRRDKINQRMKTLQ--KLVPNSSK-------TDKASMLDEVIEYLKQLQAQVS----------MMSRMNMP-------------------SMML--PMAMQQQQQL-------------------------------------------QMSLMSNPMGLG---MGMGMPGLGLLDLNSMNRAAASAPNIHANMMPNPFLPM------------------------------------NCPSWDASSNDSRFQSPLIPDPMSAFLACSTQPTTMEAYS---------------------------------------------------------------------------------RMATLYQQMQRQLPPPSNPK-------------------------------------------------------------- [399] 'gi|30680903|ref|NP 849996.1| PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); transcription factor [Arabidopsis thaliana]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDPQQQPSSDQNLFIQEDEMTSWLHYPL--------------RDDDFCSDLLFSAAPTATATATVSQVTAARPPVSSTNESRPPVRN------------------------------------------------------------------------------------------------------FMNFSRLRGDFNNGRGGESGPLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAYNRKGKAVAMTAPAIEITGTSSS--------------------------------------------------------------------------------------------------------------------VVSKSEIEPEKTNVDDRKRKEREATTTDETESRSE-----------------ETKQARVSTTSTKRSR---A-AEVHNLSER----------------------KRRDRINERMKALQ--ELIPRCNK-------SDKASMLDEAIEYMKSLQLQIQ----------MMSMGCGMM------------------PMMY--PGMQQYMPHM--------------------------------------------------AMGMG---MNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYP--------VHASDPSRVFVPNQQYDPTSGQPQYPAGY-------------------TDPYQQFRGLHPTQPP------------------------------------------------------------------------------QFQNQATSYPSSSRVSSSKESEDHGNHTTG------------------------------------------------------------ [407] 'gi|30680909|ref|NP 179608.2| PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); transcription factor [Arabidopsis thaliana] >gi|26' ------------------------------------------------------------------------------------MHHFV----------------------------------------------------------------------------------------------------------------------------------------------------PDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVVQNQRLHTKKPSSSPPK---------------------------------------------------------------------------------------------------------------------LLPSMDPQQQPSSDQNLFIQEDEMTSWLHYPL--------------RDDDFCSDLLFSAAPTATATATVSQVTAARPPVSSTNESRPPVRN------------------------------------------------------------------------------------------------------FMNFSRLRGDFNNGRGGESGPLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAYNRKGKAVAMTAPAIEITGTSSS--------------------------------------------------------------------------------------------------------------------VVSKSEIEPEKTNVDDRKRKEREATTTDETESRSE-----------------ETKQARVSTTSTKRSR---A-AEVHNLSER----------------------KRRDRINERMKALQ--ELIPRCNK-------SDKASMLDEAIEYMKSLQLQIQ----------MMSMGCGMM------------------PMMY--PGMQQYMPHM--------------------------------------------------AMGMG---MNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYP--------VHASDPSRVFVPNQQYDPTSGQPQYPAGY-------------------TDPYQQFRGLHPTQPP------------------------------------------------------------------------------QFQNQATSYPSSSRVSSSKESEDHGNHTTG------------------------------------------------------------ [478] 'gi|4580456|gb|AAD24380.1| unknown protein [Arabidopsis thaliana]' ------------------------------------------------------------------------------------MHHFV----------------------------------------------------------------------------------------------------------------------------------------------------PDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVVQNQRLHTKKPSSSPPK---------------------------------------------------------------------------------------------------------------------LLPSMDPQQQPSSDQNLFIQEDEMTSWLHYPL--------------RDDDFCSDLLFSAAPTATATATVSQVTAARPPVSSTNESRPPVRN------------------------------------------------------------------------------------------------------FMNFSRLRGDFNNGRGGESGPLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAYNRKGKAVAMTAPAIEITGTSSS--------------------------------------------------------------------------------------------------------------------VVSKSEIEPEKTNVDDRKRKEREATTTDETESRSE-----------------ETKQARVSTTSTKRSR---A-AEVHNLSER----------------------KRRDRINERMKALQ--ELIPRCNK-------SDKASMLDEAIEYMKSLQLQIQ----------MMSMGCGMM------------------PMMY--PGMQQYMPHM--------------------------------------------------AMGMG---MNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYP--------VHASDPSRVFVPNQQYDPTSGQPQYPAGY-------------------TDPYQQFRGLHPTQPP------------------------------------------------------------------------------QFQNQATSYPSSSRVSSSKESEDHGNHTTESSNIVSKFEQGE------------------------------------------------ [490] 'gi|30681206|ref|NP 849626.1| PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription factor/ transcription regulat' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPLFELFRLTKAKLESAQDRNPSPPVDEVVELVWENGQISTQSQSSRSRNIPPPQANSSRAREIGNGSK---------------------------------------------------------------------------------------------------------TTMVDEIPMSVPSLMTGLSQDDDFVPWLNHHP--------------SLDGYCSDFLRDVSSPVTVNEQESDMAVNQTAFPLFQRRKDGNESAPAASSSQYNGFQ----------------------------------------------------SHSLYGSDRARDLPSQQTNPDRFTQTQEPLITSNKPSLVNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAKDSEDKVLNESVASATPK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNQKACLISEDSCRKDQESEKAVVCSS---------------------------------------------------------------------------------------------------------------------VGSGNSLDGPSESPSLSLKRKHSNIQDIDCHSED--------VEEESGDGRKEAGPSRTGLGSKRSR---S-AEVHNLSER----------------------RRRDRINEKMRALQ--ELIPNCNK-------VDKASMLDEAIEYLKSLQLQVQ----------IMSMASGYYLP----------------PAVMFPPGMGHYPAAA-----------------------------------------------------AA---MAMGMGMPYAMGLPDLSRGGSSVN---------------------------------------------------------------------HGPQFQVSGMQQQPVAMGIPRVSGGGIFAGSSTIGNGSTRDL--------------------------------------------------SGSKDQTTTNNNSNLKPIKRKQGSSDQFCGSS------------------------------------------------------------ [524] lcl|Smo_ALC_45_1_unnamed_protein_product -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?KATIPGSIKFPELVLVSASSRELPPVFFVRGNDVYTGRGKGMESSGSYFFGIGQEPSDENAPSETDITGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DMNCSYDTKNSGRTLGNANDSSFTATT---------------------------------------------------------------------------------------------------------------------------------------GGSRSDKTDRDCKRVD----------VEDTAGCQIRRDKKPPKGSKRSR---A-AEVHNLSER----------------------KRRDRINERMKALQ--ELIPNSNK-------TDKASMLDEAIEYLKLLQHQLQ----------VVCPISWLDSKSAFPFV----------------PDDVHEKR------------------------------------------------------------DDVPNGSSRFITVRCGSTPGRRGRAPFPTAS--------------------------------------------------------------GTPFQCWSSSHECSIPAGQRKRREISMVLLHFKQGDDRQFLFEAPGAECVDAIVRDVVAVNNLQLRILHLVQECGQLLEYGPIKSKEEQEQDEEEEDEGNSTGASSSSS?-------------------------------------------------------------------------- [357] 'gi|4093153|gb|AAC99771.1| phytochrome-associated protein 3 [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPLFELFRLTKAKLDSAQDRNPSPPVDEVVELVWENGQISTQSQSSRSRNIPPPQANSSRAREIGNGSK---------------------------------------------------------------------------------------------------------TTMVDEIPMSVPSLMTGLSQDDDFVPWLNHHP--------------SLDGYCSDFLRDVSSPVTVNEQESDMAVNQTAFPLFQRRKDGNESAPAASSSQYNGFQ----------------------------------------------------SHSLYGSDRARDLPSQQTNPDRFTQTQEPLITSNKPSLVNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAKDSEDKVLNESVASATPK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNQKACLISEDSCRKDQESEKAVVCSS---------------------------------------------------------------------------------------------------------------------VGSGNSLDGPSESPSLSLKRKHSNIQDIDCHSED--------VEEESGDGRKEAGPSRTGLGSKRSR---L-AEVHNLSER----------------------RRRDRINEKMRALQ--ELIPNCNK-------VDKASMLDEAIEYLKSLQLQVQ----------IMSMASGYYLP----------------PAVMFPPGMGHYPAAA-----------------------------------------------------AA---MAMGMGMPYAMGLPDLSRGGSSVN---------------------------------------------------------------------HGPQFQVSGMQQQPVAMGIPRVSGGGIFAGSSTIGNGSTRDL--------------------------------------------------SGSKDQTTTNNNSNLKPIKRKQGSSDQFCGSS------------------------------------------------------------ [524] 'gi|77556567|gb|ABA99363.1| BP-5 protein [Oryza sativa (japonica cultivar-group)] >gi|77556566|gb|ABA99362.1| BP-5 protein [Oryz' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNQFVPDWNTTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAPRKPPRP----------------------------------------------------------------------------------------------------------------------------------EKTTAAAAAAMAEDESASWFQYPV-----------DDVLEKDLFTELFGEMTAAGGGGGDVRRAACKEERGAVAAFQSRMMPPPWPARGKAEFGDVDDVCGV----------------------------------------------------------------------------------------------------SEVVMAKMDGAAAAETVGESSMLTIGSSICGSNHVQTPP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VGNGKAGAGTAGAARRAHDTATVASSS---------------------------------------------------------------------------------------------------------------MRSRSCTAKAEPRDVAAAGVGGKRKQRGGAAMESGSPSED----------VEFESAAATCSPAQKTTTAKRRR---A-AEVHNLSER----------------------RRRDRINEKMKALQ--ELIPHCNK-------TDKASMLDEAIEYLKSLQLQLQ----------MMWMGGGMAPP----------------AVMF--PAAGVHQYMQ--------------------------------------------RMGAVGMGPPH---MASLPRMPPFMAPPPAAVQSSPVVSM-------------------------------------------------------------------ADPYARCLAVDHLQPPPPMH------------------------------------------------------------------------YLQGMSFYQLAAAKNLQQQQNTAEAPPPPPAGGNRAAADS---------------------------------------------------- [445] 'gi|77556568|gb|ABA99364.1| BP-5 protein [Oryza sativa (japonica cultivar-group)]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNQFVPDWNTTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAPRKPPRP----------------------------------------------------------------------------------------------------------------------------------EKTTAAAAAAMAEDESASWFQYPV-----------DDVLEKDLFTELFGEMTAAGGGGGDVRRAACKEERGAVAAFQSRMMPPPWPARGKAEFGDVDDVCGV----------------------------------------------------------------------------------------------------SEVVMAKMDGAAAAETVGESSMLTIGSSICGSNHVQTPP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VGNGKAGAGTAGAARRAHDTATVASSS---------------------------------------------------------------------------------------------------------------MRSRSCTAKAEPRDVAAAGVGGKRKQRGGAAMESGSPSED----------VEFESAAATCSPAQKTTTAKRRR---A-AEVHNLSER----------------------RRRDRINEKMKALQ--ELIPHCNK-------TDKASMLDEAIEYLKSLQLQLQ----------MMWMGGGMAPP----------------AVMF--PAAGVHQYMQ--------------------------------------------RMGAVGMGPPH---MASLPRMPPFMAPPPAAVQSSPVVSM-------------------------------------------------------------------ADPYARCLAVDHLQPPPPMQH-----------------------------------------------------------------------YLQGMSFYQLAAAKNLQQQQNTAEAPPPPPAGGNRAAADS---------------------------------------------------- [446] lcl|Smo_ALC_25_1_unnamed_protein_product -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?KATIPGSIKFPELVLVSASSGELPPVFFVRGNDVYTGRGKDMESSGSYFFGIGQE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TLGNANDSSFTATT---------------------------------------------------------------------------------------------------------------------------------------GGSRSDKTDRDCKRVD----------VEDTAGCQIRRDKKPPKGSKRSR---A-AEVHNLSER----------------------KRRDRINERMKALQ--ELIPNSNK-------TDKASMLDEAIEYLKLLQHQLQ----------VVCRSSWLDSKSAFPFV----------------PDDVHEKR------------------------------------------------------------DDVPNGSSRFITIRCGSTPGRRGRAPFPTAS--------------------------------------------------------------GTPFQCWSSSHEYSIPAGSEHR------------------------------------------------------FVQCALDDPPSTATPDPNSATAAAAAKPAAKFFPAAKARESSMKNR-------------------------------------------------------------- [287] 'gi|50928761|ref|XP 473908.1| OSJNBa0058K23.6 [Oryza sativa (japonica cultivar-group)] >gi|38344324|emb|CAE02150.2| OSJNBa0058K2' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEARRPTPTRRSR---S-AEFHNFSER----------------------RRRDRINEKLKALQ--ELLPNCTK-------TDKVSMLDEAIDYLKSLQLQLQ----------MLVMGKGMA------------------PVVP--PELQQYMHYI-------------------------------------------------------------TADPSQIPPIRPSE----------------------------------------------------------------------------PRPFQITHATQQRQSNVESDFL---------------------------------------------------------------SQMQNLHPSEPPQNFLRPPKLQLYTPEQQRRGLASSSGHNSGWITERNSSYNFLE-------------------------------------------- [181] lcl|Smo_ALC_2_1_unnamed_protein_product -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?SDNTTEKSDKAERIAEKRKAPQMTESMDCQSE-------------DVEAESVDTKKPATRPKRSR---A-AEVHNLSERVRNLASSTYTRTLQ--------RRRDRINEKMRALQ--ELIPNSNK-------TDKASMLDEAIEYLKMLQLQLQ----------MMSMRSGMSMP----------------PMAM--ANGVRHPHMQ------------------------MPPQMAPLPYGMGMGMGMLGVGMNMGMGMGM---GMNMVDLGSSSTAPGAAAAAAPLRPIVSE----------------------------------------------------------------PDSYNVYVSQQQLQIPVQVMNREMYNAYM----------------------------------------------------------------------------------------------------------------------------------------------------------- [235] 'gi|34899612|ref|NP 911152.1| transcription factor BHLH9-like protein [Oryza sativa (japonica cultivar-group)] >gi|24059945|dbj|' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDAGATARSSSSSAMMMNQKKPLSDGELVELLWQDGGVVAHAQTRHRSSD-------------------------------------------------------------------------------------------------------------------------------------VLARSGVTGEEETASAWFADGGGGGGGDDDALGLGMGRDIYSQLWHSFANVDGHAAGALALATPTPTPRAAA---------------------------------------------------------------------------------------------------------------------------------------------RSDDVSSRLDEADLSICGSNAVVAPALPADDDDDI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAAAPREEEEEEEEGPGAARAAGASSS--------------------------------------------------------------------------------------------------------------------------GGSGSGSGSYPLFKRGREELVDSLSEVAD------------------ETRPSKRPAAKRRTR---A-AEVHNLSER----------------------RRRDRINEKLRALQ--ELVPHCNK-------TDKASILDEAIEYLKSLQMQVQ----------IMWMTTGIV------------------PMMF--PGTHQLMPPM---------------------------------------------------GMGL---NTACMPGAQAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNAPSVPDDMQNDNRI---------------------------------------RGPRNPFLHCNDTLTATAQVP---------------------------------------------------------------GLFTYGSQIAEQNEIQELLSGAVIPSSSDGTIK------------------------------------------------------------------- [417] 'gi|30689218|ref|NP 565991.2| PIF4 (PHYTOCHROME INTERACTING FACTOR 4); DNA binding / transcription factor [Arabidopsis thaliana]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEHQGWSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQTHREQTQTQKQDHHEEALR-----------------------------------------------------------------------------------------------------------------------------SSTFLEDQETVSWIQYPP--DEDPF-------EPDDFSSHFFSTMDPLQRPTSETVKPKSSPEPPQVMVKPKACPDPPPQVMPPPKFRLT----------------------------------------------------------------------------------------------------------------NSSSGIRETEMEQYSVTTVGPSHCGSNPSQNDLD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSMSHDRSKNIEEKLNPNASSSSGGSS--------------------------------------------------------------------G----------------------------------------------CSFGKDIKEMASGRCITTDRKRKRINHTDESVSLSD----------------AIGNKSNQRSGSNRRSR---A-AEVHNLSER----------------------RRRDRINERMKALQ--ELIPHCSK-------TDKASILDEAIDYLKSLQLQLQ----------VMWMGSGMAAAAASA------------PMMF--PGVQPQQFIR------------------------------------------------------Q---IQSPVQLPRFPVMDQSAIQNNPGLVC-------------------------------------------------------------------QNPV------QNQIISDRFARYIGGFPHMQA-------------------------------------------------------------------ATQMQPMEMLRFSSPAGQQSQQPSSVPTKTTDGSRLDH------------------------------------------------ [430] 'gi|30689224|ref|NP 850381.1| PIF4 (PHYTOCHROME INTERACTING FACTOR 4); DNA binding / transcription factor [Arabidopsis thaliana]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEHQGWSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQTHREQTQTQKQDHHEEALR-----------------------------------------------------------------------------------------------------------------------------SSTFLEDQETVSWIQYPP--DEDPF-------EPDDFSSHFFSTMDPLQRPTSETVKPKSSPEPPQVMVKPKACPDPPPQVMPPPKFRLT----------------------------------------------------------------------------------------------------------------NSSSGIRETEMEQYSVTTVGPSHCGSNPSQNDLD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSMSHDRSKNIEEKLNPNASSSSGGSS--------------------------------------------------------------------G----------------------------------------------CSFGKDIKEMASGRCITTDRKRKRINHTDESVSLSD----------------AIGNKSNQRSGSNRRSR---A-AEVHNLSER----------------------RRRDRINERMKALQ--ELIPHCSK-------TDKASILDEAIDYLKSLQLQLQ----------VMWMGSGMAAAAASA------------PMMF--PGVQPQQFIR------------------------------------------------------Q---IQSPVQLPRFPVMDQSAIQNNPGLVC-------------------------------------------------------------------QNPV------QNQIISDRFARYIGGFPHMQA-------------------------------------------------------------------AT--QPMEMLRFSSPAGQQSQQPSSVPTKTTDGSRLDH------------------------------------------------ [428] 'gi|25408828|pir||H84860 hypothetical protein At2g43010 [imported] - Arabidopsis thaliana' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEHQGWSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQTHREQTQTQKQDHHEEALR-----------------------------------------------------------------------------------------------------------------------------SSTFLEDQETVSWIQYPP--DEDPF-------EPDDFSSHFFSTMDPLQRPTSETVKPKSSPEPPQVMVKPKACPDPPPQVMPPPKFRLT----------------------------------------------------------------------------------------------------------------NSSSGIRETEMEQYSVTTVGPSHCGSNPSQNDLD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSMSHDRSKNIEEKLNPNASSSSGGSS--------------------------------------------------------------------G----------------------------------------------CSFGKDIKEMASGRCITTDRKRKRINHTDESVSLSD---------------------SNQRSGSNRRSR---A-AEVHNLSER----------------------RRRDRINERMKALQ--ELIPHCSK-------TDKASILDEAIDYLKSLQLQLQ----------VMWMGSGMAAAAASA------------PMMF--PGVQPQQFIR------------------------------------------------------Q---IQSPVQLPRFPVMDQSAIQNNPGLVC-------------------------------------------------------------------QNPV------QNQIISDRFARYIGGFPHMQA-------------------------------------------------------------------AT--QPMEMLRFSSPAGQQSQQPSSVPTKTTDGSRLDH------------------------------------------------ [423] 'gi|87241328|gb|ABD33186.1| Basic helix-loop-helix dimerisation region bHLH [Medicago truncatula]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSKEKVDHKEMNNSCAPDQSSVPRNDLFELVWQNDQILVHGQSSNSNRAKMTPTLPSHTLKGHDKYSGQHANETNTRIGKFEDLDNGLNEI-------------------------------------------------------------------------------------------------------------------------------ITRSVSSSQDEDLMTMMPWLNCAMDDEHSLHYSSCFVHEPGARTNDFAATNKFSLLDRKSNCIQVFSDSHKQGILSKGSSLAVEDFDTSELKTSTNQLNMSSLLQQCQPSFESIRFRESGLSENNTKGNANQHAPCEEISHVPSSSTVMNFTHFAKPAAIVKANLQNIGFSSSRSERVGAKNKDAAAIGRNPCESSKVDLSVECPKSSAIHCHQSVEPSRVGLKPLEPKSLEKNTTVSTSACKEDVSKVDQTS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NQVLSESSRKGQEVFKKCTELTVASSS---------------------------------------------------------------------------------------------------------------------VCSDNGVHRSSDDANQNLKRKNLDSEDSEWHSED---------FEDESIGVKRTDHGRGVTGSKKNR---S-TEVHNLSER----------------------RRRDRINERMRALQ--ELIPNCNKVDLFFLQADKASMLDEAIEYLKSLQLQLQ----------IMSMGGGGLYM----------------PMTL--PAGMQHMHAA--------------------------------------------HMFPFSPMSVA---MQMGLGVPQFQGTHLPVAHTSGLAALHGMVRPNPQMFGLQAGQGL------------------------------------------------HMPMPSASMFSYPGEPVMNSSAVELN------------------------------------------------------------------ASGTAGLMETVESASASKLKDQMPKLKDPMPNVNSQVMLNNKGCSSTNQMSIQCEATTGGLEQSNVVLDSAHALLENDKRDNIEIEIDKSHE [689] 'gi|42568685|ref|NP 200935.2| DNA binding / transcription factor [Arabidopsis thaliana]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSNYGVKELTWENGQLTVHGLGDEVEPTTSNNPIWTQSLNGCETLESVVHQAALQQPSKFQLQSPNGPNHNYESKDGSCSRKR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GYPQEMDRWFAVQEESHRVGHSVTASA-----------------------------------------------------------------------------------------------------------------------SGTNMSWASFESGRSLKTARTGDRDYFRSGSE---------TQDTEGDEQETRGEAGRSNGRRGR---A-AAIHNESER----------------------RRRDRINQRMRTLQ--KLLPTASK-------ADKVSILDDVIEHLKQLQAQVQ----------FMSLRANLPQQMMIPQ--------------LPPPQSVLSIQHQ--------------------------------------------QQQQQQQQQQQ---QQQQQFQMSLLATMARMGMGGGGNGYGGLVPPPPPPPMMVPPMGNRDCTNGSSATL-------------------------------------SDPYSAFFA-----------------------------------------------------------------------------------QTMNMDLYNKMAAAIYRQQSDQTTKVNIGMPSSSSNHEKRD--------------------------------------------------- [366] 'gi|30694924|ref|NP 191465.3| PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription factor [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQARREPSVQVQTHKQETLRKPNNIFL--------------------------------------------------------------------------------------------------------------DNQETVQKPNYAALDDQETVSWIQYPP--DDVIDP------FESEFSSHFFSSIDHLGGPEKPRTIEETV---------------------------------------------------------------------------------------------------------------------------------------------KHEAQAMAPPKFRSSVITVGPSHCGSNQSTNIHQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTLPVSMSDRSKNVEERLDTSSGGSS--------------------------------------------------------------------G----------------------------------------------CSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQS------DIGLTSTDDQTMGNKSSQRSGSTRRSR---A-AEVHNLSER----------------------RRRDRINERMKALQ--ELIPHCSR-------TDKASILDEAIDYLKSLQMQLQ----------VMWMGSGMAAAAAAAAS----------PMMF--PGVQSSPYIN----------------------------------------------------QMA---MQSQMQLSQFPVMNRSAPQNHPGLVC-------------------------------------------------------------------QNPVQLQLQAQNQILSEQLARYMGGIPQMPP-------------------------------------------------------------AGNQMQTVQQQPADMLGFGSPAGPQSQLSAPATTDSLHMGKIG------------------------------------------------- [444] 'gi|79331774|ref|NP 001032117.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|45935023|gb|AAS79546.1| At5g61270' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDRWFAVQEESHRVGHSVTASA-----------------------------------------------------------------------------------------------------------------------SGTNMSWASFESGRSLKTARTGDRDYFRSGSE---------TQDTEGDEQETRGEAGRSNGRRGR---A-AAIHNESER----------------------RRRDRINQRMRTLQ--KLLPTASK-------ADKVSILDDVIEHLKQLQAQVQ----------FMSLRANLPQQMMIPQ--------------LPPPQSVLSIQHQ--------------------------------------------QQQQQQQQQQQ---QQQQQFQMSLLATMARMGMGGGGNGYGGLVPPPPPPPMMVPPMGNRDCTNGSSATL-------------------------------------SDPYSAFFA-----------------------------------------------------------------------------------QTMNMDLYNKMAAAIYRQQSDQTTKVNIGMPSSSSNHEKRD--------------------------------------------------- [278] 'gi|20127070|gb|AAM10954.1| putative bHLH transcription factor [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQARREPSVQVQTHKQETLRKPNNIFL--------------------------------------------------------------------------------------------------------------DNQETVQKPNYAALDDQETVSWIQYPP--DDVIDP------FESEFSSHFFSSIDHLGGPEKPRMIEETV---------------------------------------------------------------------------------------------------------------------------------------------KHEAQAMAPPKFRSSVITVGPSHCGSNQSTNIHQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTLPVSMSDRSKNVEERLDTSSGGSS--------------------------------------------------------------------G----------------------------------------------CSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQS------DIGLTSTDDQTMGNKSSQRSGSTRRSR---A-AEVHNLSER----------------------RRRDRINERMKALQ--ELIPHCSR-------TDKASILDEAIDYLKSLQMQLQ----------VMWMGSGMAAAAAAAAS----------PMMF--PGVQSSPYIN----------------------------------------------------QMA---MQSQMQLSQFPVMNRSAPQNHPGLVC-------------------------------------------------------------------LNPVQLQLQAQNQILSEQLARYMGGIPQMPP-------------------------------------------------------------AGN--QTVQQQPADMLGFGSPAGPQSQLSAPATTDSLHMGKIG------------------------------------------------- [442] 'gi|30694919|ref|NP 851021.1| PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription factor [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQARREPSVQVQTHKQETLRKPNNIFL--------------------------------------------------------------------------------------------------------------DNQETVQKPNYAALDDQETVSWIQYPP--DDVIDP------FESEFSSHFFSSIDHLGGPEKPRTIEETV---------------------------------------------------------------------------------------------------------------------------------------------KHEAQAMAPPKFRSSVITVGPSHCGSNQSTNIHQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTLPVSMSDRSKNVEERLDTSSGGSS--------------------------------------------------------------------G----------------------------------------------CSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQS------DIGLTSTDDQTMGNKSSQRSGSTRRSR---A-AEVHNLSER----------------------RRRDRINERMKALQ--ELIPHCSR-------TDKASILDEAIDYLKSLQMQLQ----------VMWMGSGMAAAAAAAAS----------PMMF--PGVQSSPYIN----------------------------------------------------QMA---MQSQMQLSQFPVMNRSAPQNHPGLVC-------------------------------------------------------------------QNPVQLQLQAQNQILSEQLARYMGGIPQMPP-------------------------------------------------------------AGN--QTVQQQPADMLGFGSPAGPQSQLSAPATTDSLHMGKIG------------------------------------------------- [442] 'gi|62318640|dbj|BAD95106.1| bHLH transcription factor like protein [Arabidopsis thaliana]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDRWFAVQEESHRVGHSVTASA-----------------------------------------------------------------------------------------------------------------------SGTNMSWASFESGRSLKTARTGDRDYFRSGSE---------TQDTEGDEQETRGEAGRSNGRRGR---A-AAIHNESER----------------------RRRDRINQRMRTLQ--KLLPTASK-------ADKVSILDDVIEHLKQLQAQVQ----------FMSLRANLPQQMMIPQ--------------LPPPQSVLSIQHQ--------------------------------------------QQQQQQQQQQQ---QQQQQFQMSLLATMARMGMGGGGNGYGGLVPPPPPPPMMVPPMGNRDCTNGSSATL-------------------------------------SDPYSAFFA-----------------------------------------------------------------------------------QTVNMDLYNKMAAAIYRQQSDQTTKVNIGMPSSSSNHEKRD--------------------------------------------------- [278] 'gi|32527639|gb|AAP86213.1| putative bHLH transcription factor [Arabidopsis thaliana]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDRWFAVQEESHRVGHSVTASA-----------------------------------------------------------------------------------------------------------------------SGTNMSWASFESGRSLKTARTGDRDYFRSGSE---------TQDTEGDEQETRGEAGRSNGRRGR---A-AAIHNESER----------------------RRRDRINQRMRTLQ--KLLPTASK-------ADKVSILDDVIEHLKQLQAQVQ----------FMSLRANLPQQMMIPQ--------------LPPPQSVLSIQHQ---------------------------------------------QQQQQQQQQQ---QQQQQFQMSLLATMARMGMGGGGNGYGGLVPPPPPPPMMVPPMGNRDCTNGSSATL-------------------------------------SDPYSAFFA-----------------------------------------------------------------------------------QTMNMDLYNKMAAAIYRQQSDQTTKVNIGMPSSSSNHEKRD--------------------------------------------------- [277] 'gi|31043851|emb|CAD32238.1| BP-5 protein [Oryza sativa]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSLADGGDNAGDLSELV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RARRSSGGAARRKAEAGGGGGGASSSMLSAIGSSICGSNQVQVQQRTASEPG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RRGAPPSAWGARTPSPAAGPTTATATR--------------------------------------------------------------------R----------------------------------------------PPWRRRRGGPTAASAPPPPRSRRAPATGAASASGSTPPRTPRAPARTRSRSRLVARKPPAKMTTARRSR---A-AEVHNLSER----------------------RRRDRINEKMRALQELELIPHCNK-------TDKASMLDEAIEYLKSLQLQLR----------VMWMGSGMAP-----------------PLMF--PGVHQYLPRM-------------------------------------------------GVRIGA---?AAAMPRMPFMAAPQPVVPTPPVNHLDLGVNHLQPPPTQLYLQGVG-----------------------------------------------YYPLGAKAVQQQQNPPLHVPNGSIMPPPENAPNTGSG--------------------------------------------------------------------------------------------------------------------------------------------------- [335] lcl|Smo_ALC_54_1_unnamed_protein_product --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNPEVAAAAAAAAVFDQRQASKPNFSASSAATTTFVHESEQQGLKRGLVQRSSSSIVAESAPLVSPHKAGDHARAVKREQAGSMISGGGSSSCKTKS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGNDESQHKSVAGSKKYDAEPTITSSS---------------------------------------------------------------------------------------------------------------------GGSDNTTEKSDKAERIAEKRKAPQMTESMDCQSE-------------DVEAESVDTKKPATRPKRSR---A-AEVHNLSERVLLRASSTYTRTLQ--------RRRDRINEKMRALQ--ELIPNSNK-------TDKASMLDEAIEYLKMLQLQLQ----------MMSMRSDGSVA---------------------------------------------------------------LRDGDGNGNGNAGSRHEYGNGNGD---GDEHGRLGELEHSSRSGGSGSSIETDRERAGF-------------------------------------------------------------VQRLRFSAAIANSRPGHEQGNVQCLH?------------------------------------------------------------------------------------------------------------------------------------------------------------- [340] 'gi|42569994|ref|NP 182220.2| PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor [Arabidopsis thaliana] >gi|22' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAKPLASSSSEPNMISPSSNIKPKLKDEDYMELVCENGQILAKIRRPKNNGSFQKQRRQSLLDLYETEYS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGFKKNIKILGDTQVVPVSQSKPQQDKETNEQMNNNKKKLKSSKIEFERNVSKSNKCVESST----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LIDVSAKGPKNVEVTTAPPDEQSAAVG-----------------------------------------------------------------------------------------------------------RSTELYFASSSKFSRGTSRDLSCCSLKRKYGDIEEEESTYLSNN--------SDDESDDAKTQVHARTRKPVTKRKR---S-TEVHKLYER----------------------KRRDEFNKKMRALQ--DLLPNCYK-------DDKASLLDEAIKYMRTLQLQVQ----------MMSMGNGLIRP----------------PTML--PMGHYSPMGL-------------------------------------------------GMHMGA---AATPTSIPQFLPMNVQATGFPGMNNAPPQMLSFLNHPSGLIPNTPIFSPLENC----------------------------------------SQPFVVPSCVSQTQATSFT-------------------------------------------------------------------------QFPKSASASNLEDAMQYRGSNGFSYYRSPN-------------------------------------------------------------- [416] 'gi|28207148|gb|AAO37214.1| hypothetical protein [Arabidopsis thaliana]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEAKPLASSSSEPNMISPSSNIKPKLKDEDYMELVCENGQILAKIRRPKNNGSFQKQRRQSLLDLYETEYS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGFKKNIKILGDTQVVPVSQSKPQQDKETNEQMNNNKKKLKSSKIEFERNVSKSNKCVESST----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LIDVSAKGPKNVEVTTAPPDEQSAAVG-----------------------------------------------------------------------------------------------------------RSTELYFASSSKFSRGTSRDLSCCSLKRKYGDIEEEESTYLSNN--------SDDESDDAKTQVHARTRKPVTKRKR---S-TEVHKLYER----------------------KRRDEFNKKMRALQ--DLLPNCYK-------DDKASLLDEAIKYMRTLQLQVQ----------MMSMGNGLIRP----------------PTML--PMGKYSPMGL-------------------------------------------------GMHMGA---AATPTSIPQFLPMNVQATGFPGMNNAPPQMLSFLNHPSGLIPNTPIFSPLENC----------------------------------------SQPFVVPSCVSQTQATSFT-------------------------------------------------------------------------QFPKSASASNLEDAMQYRGSNGFSYYRSPN-------------------------------------------------------------- [416] lcl|Ppa_ALC_35_1_unnamed_protein_product -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGDELFSYHLKLQRDIDRSMNDATWYR-----SYVNWKCPRVWPLPGIGARPRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKALQ--ELVPNSNK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGAGALPSL----------VNNDLPSE--GANTFAA---------------SAGSSGIPN------------PAQDGL--ALTERQVTRMM---EDDMGSAMQYLQ?------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [179] lcl|Ppa_ALC_30_1_unnamed_protein_product -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAMPPG--------------------------------------------------------------------------------------------------------------------------------------------------GCQGS-----GYANPGVPAGQSLPGMGARPRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKALQ--ELVPNSNK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGAGAL-------------VNSDPPAE--GGNNFAA---------------SAGSSGVSN------------PAQDGLASALTERQVTRMM---EDDMGAAMQYLQS----------------------------------------------------------------------------KGLCLMPISLATAISTTNKGPAQAN---------------------------------------------------------------ANTGDRQGSAAASNIGKSTAGSSLAGGSKEDGSEAGRVTESTTQDT------------------------------------------------------ [233] lcl|Smo_ALC_4_1_unnamed_protein_product -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QYASNLPLSFGKPGGGSGGDVLTEAQMLGKRIRDEQ-----------------------------------------------------------------------------------------------------------QQQQQQAASLMENLSAISGQD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGIFNTFGGHPGQTNLARTKSGQACQG----------------------------------------------------------------------------------------------------------------------------------------------LRTEIQEVP-----PPVSQQQPAAAIP-GGAARPRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNSNK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGNAGAVM--------------TDLPPE--DSNQFLA---------------ALGQN----------------GAQDGI--ALTERQVAKLM---EEDMGSAMQYLQN----------------------------------------------------------------------------KGLCLMPIHLASNMSKTSNNSPPPP---------------------------------------------------------------------PPPPPPAQATKARKGVTISSSSAGKPSTVKNADISQS--------------------------------------------------------- [298] 'gi|37536764|ref|NP 922684.1| putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] >gi|14165335|gb|AAK55467.1|' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLRFVR---K-------NNH----------------------KRRDRINQKMKTLQ--KLVPNSSK-------TDKASMLDEVIDYLKQLQAQVQ----------VMSRMGSMMM-----------------PMGMAMPQLQMSVMAQMAQMAQIGL-----------------------------------SMMNMGQAGGY---APMHMHTPPFLPVSWDAAASSSSAAAADRPPQPTGAAT-------------------------------------------------------SDAFSAFLASQAAQQNAQQPN-----------------------------------------------------------------------GMEAYNRMMAMYQKLNHQQQQQQDQPSNSRQ------------------------------------------------------------- [191] 'gi|33111973|emb|CAE12173.1| putative bHLH127 transcription factor [Arabidopsis thaliana]' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMIISSQILLLFGFKLFFETRGEDDIVELLCKIGQTQIPSSDPLPILRGSGSGGREENT----------------------------------------------------------------------------------------------------------------------PLPPPLPHQNLFIQEDEMSSWPHHPL---------------RQDYLCSELYASTPAPHPQSSVSLAPPPPKPPSSAPY-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQIIAPRSAPRIQGTEEARGSTSRKRSR---A-AEMHNLAER----------------------RRREKINERMKTLQ--QLIPRCNK-------STKVSMLEDVIEYVKSLEMQIN--------QFMPHMAMGMNQP----------------PAYIPFPS-------------------------------------------------------------------------------------------QAHMAGVGPSYPPPRYPFPNIQTFDPSRVWLQSPQPNPVSNQPQ------------------------MNPYGQFVGHHQMQQSL---------------------------------------------------------------------------PPPLQVILSQYPLCLFLCSNK----------------------------------------------------------------------- [307] 'gi|51090797|dbj|BAD35275.1| bHLH transcription factor PTF1 [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGAGSDRSLKITENERNPTMLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSIPPGVLQCNSTSGTFDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EFLNGGSIPSFGTVLQALGAGGLKAAQ--------------------------------------------------------------------Q-----------------------------------EQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINH-----SSDVEPQANSAPGNSANAKPRTRARRGQ---A-TDPHSIAER----------------------LRREKISERMKNLQ--VLVPNSNK-------ADKASMLDEIIDYVKFLQLQVK----------VLSMSRLGAPGAVLPL----------L-RESQTECHSNPSLSA----------------------------STISQGPPDMPDSEDSSAFEQEVVKLM---ETSIISAMQYLQN----------------------------------------------------------------------------KGLCLMPIALASAISNQKGMAAAAAIPPEK-------------------------------------------------------------------------------------------------------------------------------------------------------------- [478] 'gi|51090798|dbj|BAD35276.1| putative bHLH transcription factor PTF1 [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGAGSDRSLKITENERNPTMLANGCLPYNTQAHPLSGQILPK-----------------------------------------------------------------------------APTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EFLNGGSIPSFGTVLQALGAGGLKAAQ--------------------------------------------------------------------Q-----------------------------------EQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINH-----SSDVEPQANSAPGNSANAKPRTRARRGQ---A-TDPHSIAER----------------------LRREKISERMKNLQ--VLVPNSNK-------ADKASMLDEIIDYVKFLQLQVK----------VLSMSRLGAPGAVLPL----------L-RESQTECHSNPSLSA----------------------------STISQGPPDMPDSEDSSAFEQEVVKLM---ETSIISAMQYLQN----------------------------------------------------------------------------KGLCLMPIALASAISNQKGMAAAAAIPPEK-------------------------------------------------------------------------------------------------------------------------------------------------------------- [401] 'gi|29424047|gb|AAO73566.1| bHLH transcription factor PTF1 [Oryza sativa]' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGAGSDRSLKITENERNPTMLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSIPPGVLQCNSTSGTFDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EFLNGGSIPSFGTVLQALGAGGLKAAQ--------------------------------------------------------------------Q-----------------------------------EQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINH-----SSDVEPQANSAPGNSANAKPRTRARRGQ---A-TDPHSIAER----------------------LRREKISERMKNLQ--VLVPNSNK-------ADKASMLDEIIDYVKFLQLQVK----------VLSMSRLGAPGAVLPL----------L-RESQTECHSNPSLSA----------------------------STISQGPTDMPDSEDSSAFEQEVVKLM---ETSIISAMQYLQN----------------------------------------------------------------------------KGLCLMPIALASAISNQKGMAAAAAIPPEK-------------------------------------------------------------------------------------------------------------------------------------------------------------- [478] 'gi|7267092|emb|CAB80763.1| putative transcriptional regulator [Arabidopsis thaliana] >gi|3193326|gb|AAC19308.1| contains simila' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MILRQQPPPPSAPPQPQTSPYYEVAELTWENGQLGLHGLGPPRVTASSTKYSTGAGGTLESIVD-------------------------------------------------------------------------------------------------------------------QATRLPNPKPTDELVPWFHHRSSRAAMAM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DALVPCSNLVHEQQSKPGGVGSTRVGS---------------------------------------------------------------------------------------------------CSDGRTMGGGKRARVAPEWSGGGSQRLTMDTYD----------------------------------------------------------------------------------------KRRDKINQRMKTLQ--KLVPNSSK-------TDKASMLDEVIEYLKQLQAQVS----------MMSRMNMP-------------------SMML--PMAMQQQQQL-------------------------------------------QMSLMSNPMGLG---MGMGMPGLGLLDLNSMNRAAASAPNIHANMMPNPFLPM------------------------------------NCPSWDASSNDSRFQSPLIPDPMSAFLACSTQPTTMEAYS---------------------------------------------------------------------------------RMATLYQQMQQQLPPPSNPK-------------------------------------------------------------- [329] lcl|Smo_ALC_40_1_unnamed_protein_product ----------------------------------------------------------------------------------------?----------------------------------------------------------------------------------------------------------------------------------------------------GVAGRSWDHDEQQQQLSNEMLVAASFQNQVGGGGAASTSQAGSRNHQGLAATLDHSDNTGQVSSWSH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------HFVPGNALSFAKLGDGGASSDPNSVKKRYRDEELQ-------------------------------------------------------------------------------------------------------------------QMYGAAGQMQIDQQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKHQQDQQ--------------------------------------------------------------------Q--------------------------------------------------------------------------RSQAPLAY-----DSNAPVAPVNPPPAGISARPRVRARRGQ---A-TDPHSIAER----------------------LRREKIAERMKALQ--ELVPNANK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGAGATMAP----------LVADLPLE--VSKQFLS----KFYSITFCFFKGAGQELVSSSQLCRQISVNL-SPQDGI--ALTEHQVARLM---EDDMGSAMQYLQS----------------------------------------------------------------------------KGLCLMPISLATSISSCSTKVPTTM------------------------------------------------------------------SLAATAAAAAAAGSSPTTAAIAGALQHATLSDSEASAMEGCNGRAATKDFPEQSEEQWLK------------------------------------- [393] 'gi|42567227|ref|NP 194608.3| transcription factor [Arabidopsis thaliana] >gi|7269734|emb|CAB81467.1| putative protein [Arabidop' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTWKPKMLILSHDLISPEKYIMGEDDIVELLGKSSQVVTSSQTQTPSCDPPLILRGSGSGDGEGNGP------------------------------------------------------------------------------------------------------------LPQPPPPLYHQQSLFIQEDEMASWLHQPN--------------RQDYLYSQLLYSGVASTHPQSLASLEPPPPPRAQYILAAD-------------------------------------------------------------------------------------------------------------------------RPTGHILAERRAENFMNISRQRGNIFLGGVEAVPSNSTLLSSATE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIPATHGTESRATVTGGVSRTFAVPGL--------------------------------------------------------------------G-----------------------------------------------PRGKAVAIETAGTQSWGLCKAETEPVQRQPATETDITDERKRKTREETNVENQGTEEARDSTSSKRSR---A-AIMHKLSER----------------------RRRQKINEMMKALQ--ELLPRCTK-------TDRSSMLDDVIEYVKSLQSQIQ----------MFSMGHVMIP-----------------PMMY--AGNIQQQYMP-----------------------------------------------------HM---AMGMNRPPAFIPFPRQAHMAEG-----------------------------------------------------------------------VGPVDLFRENEETEQETMSLLLREDKRTKQKMFS------------------------------------------------------------------------------------------------------------------------------------------------------ [413] 'gi|42573075|ref|NP 974634.1| unknown protein [Arabidopsis thaliana]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTWKPKMLILSHDLISPEKYIMGEDDIVELLGKSSQVVTSSQTQTPSCDPPLILRGSGSGDGEGNGP------------------------------------------------------------------------------------------------------------LPQPPPPLYHQQSLFIQEDEMASWLHQPN--------------RQDYLYSQLLYSGVASTHPQSLASLEPPPPPRAQYILAAD-------------------------------------------------------------------------------------------------------------------------RPTGHILAERRAENFMNISRQRGNIFLGGVEAVPSNSTLLSSATE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIPATHGTESRATVTGGVSRTFAVPGL--------------------------------------------------------------------G-----------------------------------------------PRGKAVAIETAGTQSWGLCKAETEPVQRQPATETDITDERKRKTREETNVENQGTEEARDSTSSKRSR---A-AIMHKLSER----------------------RRRQKINEMMKALQ--ELLPRCTK-------TDRSSMLDDVIEYVKSLQSQIQ----------GKHLRIFRS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [340] 'gi|15242922|ref|NP 200609.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|8885595|dbj|BAA97525.1| unnamed prot' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MENGNGEGKGEFINQNNDFFLDSMSMLSS-------LPPCWDPSLPPPPPPPQSLFHALAVDAPFPDQFHHPQE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGGPTMGS--------------------------------------------------------------------Q--------------------------------------------------------------------------EGLQPQGT------------VSTTSAPVVRQKPRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNTNK-------TDKASMLDEIIEYVRFLQLQVK----------VLSMSRLGGAGSVGPR----------L-NGLSAEAGGRLNALT----------APCNGLNGNGNATG------------SSNESL--RSTEQRVAKLM---EEDMGSAMQYLQG----------------------------------------------------------------------------KGLCLMPISLATAISSSTTHSRGSL---------------------------------------------------------------FNPISSAVAAEDSNVTATAVAAPEASSTMDDVSASKA--------------------------------------------------------------- [297] 'gi|55773907|dbj|BAD72512.1| bHLH transcription factor PTF1-like [Oryza sativa (japonica cultivar-group)]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQPSSRDTVAGGGGEGTQDD-------FFD--QMLST-------LP----------------SAWADLGGGGGGAAGKSPWEVDPAAAAAASQVFDESALLASRLRHHQIGGAGGGGG------EKPVMLQLSELHRQ--------------AGGGEED--------GSGAFSP--------------LPLFTDRTNVPPREE-------------MEGGFKSPNAAAGG--EHALF-------------------------------------------------------------------------------------------------------------------NGFGVHGGSGGAGQ--PPFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QGGSMSGQ--------------------------------------------------------------------S----------------------------------------------FGGPAASGG-------------------------TA-----PVTSSGGGGTAPP----RQQRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNANK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGAAGMAPL----------V-ASMSSE--GNSNGSS----------NGGGGKASKGGTGGEGGGGGGGGGGGGTGGGM--RVTEQQVAKMM---EEDMGTAMQYLQG----------------------------------------------------------------------------KGLCLMPISLASAISSATSSASLLSR---------------------------------------------------------------PSIRHAGAPPQTMLDAAGPTSPAAMSNGDDPRHAKADGGAGGTQ------------------------------------------------------- [420] 'gi|15224109|ref|NP 180003.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|4115386|gb|AAD03387.1| unknown prote' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMNSSLLTPSSSSSSHIQTPSTTFDHED-------FLD--QIFSS---------------------------------------------------------------------------------------------------------------------------------------AP--------------WP-SVVDDAHPLPSD-----GFHGHDVDSRNQPIMMMPLNDGSSVHALY-------------------------------------------------------------------------------------------------------------------NGFSVAGSLPNFQIPQG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGGGLMNQ--------------------------------------------------------------------Q----------------------------------------------------------------------GQTQTQTQPQAS-----ASTATGGTVAAPP---QSRTKIRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKALQ--ELVPNGNK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGAASVSSQ----------ISE-AGGSHGNASSAMV-----------------------------GGSQTAGNSNDSV--TMTEHQVAKLM---EEDMGSAMQYLQG----------------------------------------------------------------------------KGLCLMPISLATAISTATCHSRNPL-------------------------------------------------------------IPGAVADVGGPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSSIAVKEAVSVSKA-------------------------------------------- [350] 'gi|51970922|dbj|BAD44153.1| putative bHLH transcription factor (bHLH066) [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMNSSLLTPSSSSSSHIQTPSTTFDHED-------FLD--QIFSS---------------------------------------------------------------------------------------------------------------------------------------AP--------------WP-SVVDDAHPLPSD-----GFHGHDVDSRNQPIMMMPLNDGSSVHALY-------------------------------------------------------------------------------------------------------------------NGFSVAGSLPNFQIPQG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGGGLMNQ--------------------------------------------------------------------Q----------------------------------------------------------------------GQTQTQTQPQAS-----ASTATGGTVAAPP---QSRTKIRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKALQ--ELVPNGNK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGAASVSSQ----------ISE-AGGSHGNASSAMV-----------------------------GGSQTAGNSNDSV--TMTEHQVAKLM---EEDMGSAMQYLQG----------------------------------------------------------------------------EGLCLMPISLATAISTATCHSRNPL-------------------------------------------------------------IPGAVADVGGPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSSIAVKEAVSVSKA-------------------------------------------- [350] 'gi|50909589|ref|XP 466283.1| putative bHLH transcription factor PTF1 [Oryza sativa (japonica cultivar-group)] >gi|46390356|dbj|' -------------------------------------------------------MGGFAYPFTPSPAWSRDAVFAGSPWAAGGVSSLA----------------------------------------------------------------------------------------------------------------------------------------------------DALVSYGAVDDEEAAFLGKTAASSPSTARLHEQQQLLLEAELLRHGDGLGFAAMDDDGGA---------AMLGA-------LEPCAMPLT---------DSG-----------------------------------------------------------GPPVICSSSSNDSSGSEHSAAMPAGGGFLVGEQQ------------QHVP--------------PAAYAAGGVLPSMAA-------------GEETPQSFG-------FGSLF------------------------------------------------------------------------------------------------------------------NGDLLQEATVSKYHHHQQQQQLGVVPSSQPHHLNDDIDFNTGKLMSFASGQQHVTPSIDSLQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ID--------QKEFSSGL-----------------------------------------------------------------------------------------------------HHLNLSSLISGPLASFNATQSHRQPAE--------------------------------------------------------------------A----------------------------------------------CGGKNGGAAPF-----------------VNLSEVLP-----KGNGSGSAGNGAP-----KPRVRARRGQ---A-TDPHSIAER----------------------LRREKISDRMKDLQ--ELVPNSNK-------TNKASMLDEIIDYVKFLQLQVK----------VLSMSRLGAAEAVVPL----------L-TETQTE--SPGFLLS---PRS----SSGERQAGAGAVTGGLPGDQP-----ELLDGG--AMFEQEVVKLM---EDNMTTAMQYLQS----------------------------------------------------------------------------KGLCLMPVALASAISAQKGT-----------------------------------------------------------------------------------------------------SSAAVRPEK---------------------KKNGDGDGGGDEEDVKGEFDAPRRPPVGRPKEMRSRV [524] lcl|Smo_ALC_11_1_unnamed_protein_product -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQDSVAADPQIGDMVDDAFFFAQLQQQRSMLSEG----------------SISQLMERASSSLDMVGSQGSEPLLHRLE--------DVPIGLP--------------VGSTLVGSAPPRPEA-------------GQALSPSWRQP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIGGMPLE--------------------------------------------------------------------M----------------------------------------------FTNSNGGNVYGRGFRG------------GEELPRAP-----VPPSQQVSLSSHSGFVR-----KACELQ---A-TDPHSIAER----------------------LRRERIAERMKALQ--DLVPNANK-------TDKASMLDEIVDYVKFLQLQVK----------VLSMSRLGSAAAVPSL----------V-ADLPSE--GANSLLA----------STLSRSTG------------------ISHDGL--ASAERQVARLM---DEDMGSAMQYLQS----------------------------------------------------------------------------KGLCLMPISLATASGKVPLSALQAIG---------------------------------------------------------------SGDKQQYTDASVTVATDRSGSANNAATGKAKEAIMDSSSNKSNEGIKQPSSIKSPKSKTN--------------------------------------- [361] 'gi|30688869|ref|NP 194827.2| DNA binding / transcription factor [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNSSSLLTPSSSPSPHLQSPA-TFDHDD-------FLH--HIFSS---------------------------------------------------------------------------------------------------------------------------------------TP--------------WPSSVLDDTPPPTSDCAPVTGFHHHDADSRNQ-ITMIPLSHNHPNDALF-------------------------------------------------------------------------------------------------------------------NGFS-TGSLP-FHLPQG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGG---------------------------------------------------------------------------------------------------------------------------------------------------QTQTQSQAT-----ASATTGGATAQ-P---QTKPKVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNGNK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGAASASSQ----------ISEDAGGSHENTSSS-----------------------------------------GEA--KMTEHQVAKLM---EEDMGSAMQYLQG----------------------------------------------------------------------------KGLCLMPISLATTISTATCPSRSPF-----------------------------------------------------------------VKDTGVPLSPNLSTTIVA-------------NGNG----SSLVTVKDAPSVSKP-------------------------------------------- [310] 'gi|20127075|gb|AAM10956.1| putative bHLH transcription factor [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNSSSLLTPSSSPSPHLQSPA-TFDHDD-------FLH--HIFSS---------------------------------------------------------------------------------------------------------------------------------------TP--------------WPSSVLDDTPPPTSDCAPVTGFHHHDADSRNQ-ITMIPLSHNHPNDALF-------------------------------------------------------------------------------------------------------------------NGFS-TGSLP-FHLPQG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGG---------------------------------------------------------------------------------------------------------------------------------------------------QTQTQSQAT-----ASATTGGATAQ-P---QTKPKVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNGNK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGAASASSQ----------ISEDAGGSHENTSSS-----------------------------------------GEA--KMTEHQ?AKLM---EEDMGSAMQYLQG----------------------------------------------------------------------------KGLCLMPISLATTISTATCPSRSPF-----------------------------------------------------------------VKDTGVPLSPNLSTTIVA-------------NGNG----SSLVTVKDAPSVSKP-------------------------------------------- [310] 'gi|7270000|emb|CAB79816.1| putative protein [Arabidopsis thaliana] >gi|2980768|emb|CAA18195.1| putative protein [Arabidopsis th' -------------------------------------------------------------MVNLVNVFNMSKSNPSNLKYYNLHPSFK----------------------------------------------------------------------------------------------------------------------------------------------------HHKALNLKRHFNNIHFHSHSPPKKKKTEAMNSSSLLTPSSSPSPHLQSPA-TFDHDD-------FLH--HIFSS---------------------------------------------------------------------------------------------------------------------------------------TP--------------WPSSVLDDTPPPTSDCAPVTGFHHHDADSRNQ-ITMIPLSHNHPNDALF-------------------------------------------------------------------------------------------------------------------NGFS-TGSLP-FHLPQG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGG---------------------------------------------------------------------------------------------------------------------------------------------------QTQTQSQAT-----ASATTGGATAQ-P---QTKPKVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKSLQ--ELVPNGNK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGAASASSQ----------ISEDAGGSHENTSSS-----------------------------------------GEA--KMTEHQVAKLM---EEDMGSAMQYLQG----------------------------------------------------------------------------KGLCLMPISLATTISTATCPSRSPF-----------------------------------------------------------------VKDTGVPLSPNLSTTIVA-------------NGNG----SSLVTVKDAPSVSKP-------------------------------------------- [367] 'gi|20127072|gb|AAM10955.1| putative bHLH transcription factor [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMNSSLLTPSSSSSSHIQTPSTTFDHED-------FLD--QIFSS---------------------------------------------------------------------------------------------------------------------------------------AP--------------WP-SVVDDAHPLPSD-----GFHGHGVDSRNQPIMMMPLNDGSSVHALY-------------------------------------------------------------------------------------------------------------------NGFSVAGSLPNFQIPQG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGGGLMNQ--------------------------------------------------------------------Q----------------------------------------------------------------------GQTQTQTQPQAS-----ASTATGGTVAAPP---QSRTKIRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKALQ--ELVPNGNK-------TDKASMLDEIIDYVEFLQLQVK----------VLSMSRLGGAASVSSQ----------ISE-AGGSHGNASSAMV-----------------------------GGSQTAGNSNDSV--TMTEHQVAKLM---EEDMGSAMQYLQG----------------------------------------------------------------------------KGLCLMPISLATAISTATCHSRNPL-------------------------------------------------------------IPGAVADVGGPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSSIAVKEAVSVSKA-------------------------------------------- [350] 'gi|42566136|ref|NP 191768.2| PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2); transcription factor [Arabidopsis thaliana]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MELVFENGQILAKGQRSNVSLHNQRTKSIMDLYEAEYNED---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMKSIIHGGGGAITNLGDTQVVPQSHVAAAHETNMLESNKHVDDSETLKASS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKRMMVDYHNRKKIKFIPPDEQSVVAD----------------------------------------------------------------------------------------------------------------------------RSFKLGFDTSSVGFTEDSEGSMYLSSS--------LDDESDDARPQVPARTRKALVKRKR---N-AEAYNSPER----------------------NQRNDINKKMRTLQ--NLLPNSHK-------DDNESMLDEAINYMTNLQLQVQ----------MMTMGNRFVTP----------------SMMM--PLGPNYSQMG---------------------------------------------------LAMG---VGMQMGEQQFLPAHVLGAGLPGINDSADMLRFLNHPGLMPMQN--------------------------------------------------SAPFIPTENCSPQSVPPSCAAFPN--------------------------------------------------------------------QIPNPNSLSNLDGATLHKKSRKTNR------------------------------------------------------------------- [346] 'gi|22535494|dbj|BAC10690.1| PIF3 like basic Helix Loop Helix protein 2 [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMFLPTDYCCRLSDQEYMELVFENGQILAKGQRSNVSLHNQRTKSIMDLYEAEYNED---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMKSIIHGGGGAITNLGDTQVVPQSHVAAAHETNMLESNKHVDDSETLKASS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKRMMVDYHNRKKIKFIPPDEQSVVAD----------------------------------------------------------------------------------------------------------------------------RSFKLGFDTSSVGFTEDSEGSMYLSSS--------LDDESDDARPQVPARTRKALVKRKR---N-AEAYNSPER----------------------NQRNDINKKMRTLQ--NLLPNSHK-------DDNESMLDEAINYMTNLQLQVQ----------MMTMGNRFVTP----------------SMMM--PLGPNYSQMG---------------------------------------------------LAMG---VGMQMGEQQFLPAHVLGAGLPGINDSADMLRFLNHPGLMPMQN--------------------------------------------------SAPFIPTENCSPQSVPPSCAAFPN--------------------------------------------------------------------QIPNPNSLSNLDGATLHKKSRKTNR------------------------------------------------------------------- [363] 'gi|34897210|ref|NP 909951.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|31126765|gb|AAP44685.1| unknown prote' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAGQQPQQQGPPEDD-------FFD--QFFSL-------TS------SFPGAAPGGRAAG-----------------------------------------------------------DQPFSLALSLDAAAAAEASGSGKRLGVGD----------------------------------------------------------------DAEGGGSKADRETVQLTGLF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPVFGGGGVQPPNLRPTPPTQ--------------------------------------------------------------------V----------------------------------------------FH---------------------------------------PQQSKQGGAAVGPQPPAPRPKVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMRALQ--ELVPNTNK-------TDRAAMLDEILDYVKFLRLQVK----------VLSMSRLGGAGAVAQL----------V-ADIPLS--VKGEASD---------------SGGNQQI--------------WEKWST--DGTERQVAKLM---EEDIGAAMQFLQS----------------------------------------------------------------------------KALCMMPISLAMAIYDTQQTQDGQP------------------------------------------------------------------------VKHEPNTPS---------------------------------------------------------------------------------- [294] 'gi|50253024|dbj|BAD29274.1| bHLH transcription factor PTF1-like protein [Oryza sativa (japonica cultivar-group)]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAAAAAGQISLDDLRNGGGVAANAGGGGGVHDD-------FLD--QMLSS-------LPPSAWPDL---------AAGKAAEDDAEG-MHHHHHQQQQQFGGP----YDESAMLASRLRQHQISGGGGGGGGGAAAVKQMVLQQLADLRQGHHMMLQGL--GGRSPAGGGGG--------GGDGGLL--------------LPLTLGSGGSGGDVQ-------------ALLKAAAANSAGGG--DAGGV------------------------------------------------------------------------------------------------------------------YGGGFAGSLHQQQQHFQPHPQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAPTIPTQ--------------------------------------------------------------------S----------------------------------------------FGGGGGGGGGGTASGG------------GAAQPQAG-----AA---GGGAPAPP-----RQRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERMKALQ--ELVPNANK----LMQTDKASMLDEIIDYVKFLQLQVKASTYTKLLIHVLSMSRLGGAAAVAPL----------V-ADMSSE--GRGGGAA---------------NGGAPAA--------------AGSDSL--TVTEQQVAKLM---EEDMGTAMQYLQG----------------------------------------------------------------------------KGLCLMPISLASAISSATCH-LRPP-----------------------------------------------------------------------VVAAAQQFPAGLGAAAAAAHHHQLSAAAAAAAMRGHLPGLNADGSVPASPSMSVLTAQSAMANGGGGAADGEGSQLKDAASVSKP------- [499] 'gi|50915588|ref|XP 468258.1| basic helix-loop-helix (bHLH) -like [Oryza sativa (japonica cultivar-group)] >gi|47497231|dbj|BAD1' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQPNARQMRGGGGGGGGGQDD-------FFD--QMLST-----------------LPAVWSELGSGKPAWDLTAGAVGGGGGASDDHSAAA----FDDSALLASRLRQHQIDGGG----------DKPIMLQLSDLHRHHGLAAGDDSG-------------------GAAGFLP--------------LSLFADRS----QDD-------------IDAAFKSPNGARG---DHALY-------------------------------------------------------------------------------------------------------------------NGFGAAGMHGAAAMQPPPFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QGGSMPAQ--------------------------------------------------------------------S----------------------------------------------FGGGAAASGGGGG---------------GSASAAAA-----AGASSGGGAAAPP-----RQRQRARRGQ---A-TDPHSIAERVYHSPTTFPFSPPFFIASMPCCLRRERIAERMKALQ--ELVPNANK-------TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGGASAVAPL----------V-ANMSSESNGNGNATS----------SSGNGEAANGSSNGDNNGGGTL------------RVTEQQVAKLM---EEDMGSAMQYLQG----------------------------------------------------------------------------KGLCLMPISLATAISSATSSSLLPR----------------------------------------------------------------TGGGAGGSLHEGGNGTSPPLVNGTATGCDDAGVFFSVKFVVELSFLLLNEDCRGKEESKLLVQKGP--------------------------------- [463] 'gi|77999289|gb|ABB16991.1| unknown [Solanum tuberosum]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAANQPEAYADD-------FLE--QILAI-------PSYSGLPVA---------DVG-----------------------------------------------------------TPSETTSFTSASAVSHL-------NSAAAAGLQQ------------PLFP--------------LGLSLDNGRDD---V-------------SEAGAYAVKHERDGMNIGNLY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGLEHLQSHAVRHSVPSI--------------------------------------------------------------------H--------------------------------------------------------------------------HVQPFQGP-----PTTSTTVTVPHPP---SIRPRVRARRGQ---A-TDPHSIAER----------------------LRRERISERIKALQ--ELVPSCNK-------TDRAAMLDEILDYVKFLRLQVK----------VLSMSRLGGASAVAQL----------V-ADIPLQSVEGDSGES----------------RSNQHI--------------WDKWSN--VDTEREVAKLM---EEDVGAAMQYLQS----------------------------------------------------------------------------KSLCIMPISLAALIYPTQLPDDQS------------------------------------------------------------------------LVKPEAAAPS---------------------------------------------------------------------------------- [304] 'gi|18378953|ref|NP 563650.1| HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / transcription factor [Arabidopsis thaliana] >gi|13' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSNNQAFMELGWRNDVGSLAVKDQGMMSERARSDEDRLINGLKWGYGYFDHDQTDNYLQIVP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EIHKEVENAKEDLLVVVPDEHSETDDH--------------------------------------------------------------------------------------------------------------HHIKDFSERSDHRFYLRNKHENPKKRRIQVLSSDDESEEFT-----------------------------REVP---S-VTRKGSKRR----------------------RRDEKMSNKMRKLQ--QLVPNCHK-------TDKVSVLDKTIEYMKNLQLQLQ----------MMSTVGVNPYF------------------------------------------------------------------------------LPATLGFGM---HNHMLTAMASAHGLNPANHMMPSPLIPALNWPLPPFTNI------------------------------------------------------SFPHSSSQSLFLTTSSPASSPQSLHGLVPYFPSFLDFSSHAMRRL------------------------------------------------------------------------------------------------------------------------------------------- [292] 'gi|4587574|gb|AAD25805.1| Contains PF|00010 helix-loop-helix DNA-binding domain. ESTs gb|T45640 and gb|T22783 come from this g' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MANNNNIPHDSISDPSPTDD-------FFE--QILGL-------SNFSGSSGSGLSGIG---GVG-----------------------------------------------------------PPPMMLQLGSGNEGNHNHMGAI--GGGGPVGFHN------------QMFP--------------LGLSLDQGKGHGFLK-------------PD---ETGKRFQDDVLDNRC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSMKP----------PMSQPAPPMPHQQSTIRPRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERIRSLQ--ELVPTVNK-------TDRAAMIDEIVDYVKFLRLQVK----------VLSMSRLGGAGAVAPL----------V-TEMPLSSSVEDET-----------------------------------QAVWEKWSN--DGTERQVAKLM---EENVGAAMQLLQS----------------------------------------------------------------------------KALCIMPISLAMAIYHSQPPDTSSS-----------------------------------------------------------------------IVKPEMNPPP---------------------------------------------------------------------------------- [297] 'gi|21593792|gb|AAM65759.1| putative lipoamide dehydrogenase [Arabidopsis thaliana]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MASNNPHDNLSDQTPSDD-------FFE--QILGL-------PNFSASSAAGLSGVDGGLGGG-----------------------------------------------------------APPMMLQLGSGEEG--SHMGGL--GGSGPTGFHN------------QMFP--------------LGLSLDQGKGPGFLR-------------PEGGHGSGKRFSDDVVDNRC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSMKPVFH-----GQPMQQPPPSAPHQPTSIRPRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERIRALQ--ELVPTVNK-------TDRAAMIDEIVDYVKFLRLQVK----------VLSMSRLGGVGAVAPL----------V-TDMPLSSSVEDETGE----------------------------GGRTPQPAWEKWSN--DGTERQVAKLM---EENVGAAMQLLQS----------------------------------------------------------------------------KALCMMPISLAMAIYHSQPPDTSS------------------------------------------------------------------------VVKPENNPPQ---------------------------------------------------------------------------------- [310] 'gi|18379045|ref|NP 563672.1| DNA binding / transcription factor [Arabidopsis thaliana] >gi|21735477|gb|AAL55714.2| putative tra' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MANNNNIPHDSISDPSPTDD-------FFE--QILGL-------SNFSGSSGSGLSGIG---GVG-----------------------------------------------------------PPPMMLQLGSGNEGNHNHMGAI--GGGGPVGFHN------------QMFP--------------LGLSLDQGKGHGFLK-------------PD---ETGKRFQDDVLDNRC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSMKPIFH-----GQPMSQPAPPMPHQQSTIRPRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERIRSLQ--ELVPTVNK-------TDRAAMIDEIVDYVKFLRLQVK----------VLSMSRLGGAGAVAPL----------V-TEMPLSSSVEDET-----------------------------------QAVWEKWSN--DGTERQVAKLM---EENVGAAMQLLQS----------------------------------------------------------------------------KALCIMPISLAMAIYHSQPPDTSSS-----------------------------------------------------------------------IVKPEMNPPP---------------------------------------------------------------------------------- [302] 'gi|20127058|gb|AAM10948.1| putative bHLH transcription factor [Arabidopsis thaliana]' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MASNNPHDNLSDQTPSDD-------FFE--QILGL-------PNFSASSAAGLSGVDGGLGGG-----------------------------------------------------------APPMMLQLGSGEEG--SHMGGL--GGSGPTGFHN------------QMFP--------------LGLSLDQGKGPGFLR-------------PEGGHGSGKRFSDDVVDNRC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSMKPVFH-----GQPMQQPPPSAPHQPTSIRPRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERIRALQ--ELVPTVNK-------TDRAAMIDEIVDYVKFLRLQVK----------VLSMSRLGGAGAVAPL----------V-TDMPLSSSV?DETGE----------------------------GGRTPQPAWEKWSN--DGTERQVAKLM---EENVGAAMQLLQS----------------------------------------------------------------------------KALCMMPISLAMAIYHSQPPDTSS------------------------------------------------------------------------VVKPENNPPQ---------------------------------------------------------------------------------- [310] 'gi|79324985|ref|NP 001031577.1| DNA binding [Arabidopsis thaliana] >gi|18411987|ref|NP 567245.1| DNA binding / transcription fa' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MASNNPHDNLSDQTPSDD-------FFE--QILGL-------PNFSASSAAGLSGVDGGLGGG-----------------------------------------------------------APPMMLQLGSGEEG--SHMGGL--GGSGPTGFHN------------QMFP--------------LGLSLDQGKGPGFLR-------------PEGGHGSGKRFSDDVVDNRC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSMKPVFH-----GQPMQQPPPSAPHQPTSIRPRVRARRGQ---A-TDPHSIAER----------------------LRRERIAERIRALQ--ELVPTVNK-------TDRAAMIDEIVDYVKFLRLQVK----------VLSMSRLGGAGAVAPL----------V-TDMPLSSSVEDETGE----------------------------GGRTPQPAWEKWSN--DGTERQVAKLM---EENVGAAMQLLQS----------------------------------------------------------------------------KALCMMPISLAMAIYHSQPPDTSS------------------------------------------------------------------------VVKPENNPPQ---------------------------------------------------------------------------------- [310] lcl|Smo_ALC_1_2_unnamed_protein_product ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NEPLRFAGFLDDVTTSSSGSVVEDCCDFDQIMAPVAPQPQIFHSLGGSSACPSSWFGND-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QNPRSSGNEDLEAALGNGTSYYEPPKK--------------------------------------------------------------------L------------------------------------------------LKTSRIEAREWDDHDQGIKRKNKEEEEEQEEELD-----QESDLHPAEKKRSCQRSSRQQQQREPWS---S-IDPQSVAAR----------------------RRRKRISERVRWLE--KLIPGGSK-------MDTASMLEEAIRYVKFLQLQVE----------LLEMIGGGGEDHHRPP--------------------------------------------------------------------------------------------------------------------------------------------------------------NSPLVLSEELQEVLFRKRCCVAAIKQST-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [247] lcl|Ppa_ALC_19_1_unnamed_protein_product ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDRTHELAEVAAGLEPNNSSSVTEQQQASAASPA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSPTGSDDSDRRKRKSSSADKLDVDSK--------------------------------------------------------------------A----------------------------------------------ADVADSQPKRCKGDNDDLVKAKAERSSSENSGDSGS-----PRAHKE-NNSSKDHAKQDYIHVRARRGQ---A-TDSHSLAER----------------------VRREKISERMKYLQ--DLVPGCSKV------TGKAVMLDEIINYVQSLQRQVE----------NLSMKLASVNPGPSST------------------------------------------------------------------------RIDHNFETTM---NKDMLQSQMSGSLGGSESTTTFGMMQQHQHQPQPQGHMMNGHCGLDFRAMGTSMDGYLRRSN-------------------------------SAPIRVQSGITSLDSFGDDVSQSIGWDGELQSIVNQMGFSFQGRYGSSPLDSLQ?--------------------------------------------------------------------------------------------------------------------------------- [323] lcl|Ppa_ALC_21_1_unnamed_protein_product ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSCTSSEKIGAATATISSAYIPEDSTHLVKELRVAGGFWNCTTSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGSVGSSSLRGVEVTMEPPLGWHGVSS----------------------------------------------------------------------------------------------------------------------LGGAVTVGEPAPRLEGLIRHSSLPATSRPFSST---------FELDDLQADPSMVYLKTLRANRGH---A-THPRSIAER----------------------VRRGKISERMKKLQ--ELVPNSDRQ------TNTADMLDDAVEYVKQLQLQVQ----------ELTNTVAELQLLQESYLKRVSWKEYHLT----------------------------------------------------------------------------------------------------------------------------------------------------------------------EGPSKKAAV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [221] lcl|Ppa_ALC_5_1_unnamed_protein_product ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?SPTGSDDSDRRKRKQSPADKSDVDCK--------------------------------------------------------------------SPESFRATLGTISSTCTRTRELLSQNWFKAVVFGMCMFFEFPCFFVVADVVDSKPKRCKGENDESVKAKAERSCSENSGDSGS-----PRALKDSNNRNKILSKQDYIHVRARRGQ---A-TDSHSLAER----------------------VRREKISERMKYLQ--DLVPGCNKV------TGKAVMLDEIINYVQSLQRQVE----------SLSMKLASVNPGPSTA------------------------------------------------------------------------RLDYNFETAL---NKDMLQPRMSGSLGGPESSATFGMLQHQQQHPS-QGPMMGGHCGLDFRSMGTSMDGYLRRSN-------------------------------SSPINVQSGITSLDTFGDDVSQLCCKSLNSPGFLNFDMGLSVDKDLCLDSLQLNC?-------------------------------------------------------------------------------------------------------------------------------- [336] lcl|Ppa_ALC_31_1_unnamed_protein_product ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------?GSYRRFFSQVRVDLPIRNDHVCKRR---A-DRITSVAAR----------------------HRRKKISERIRVLE--KLIPGGNK-------MDTATMLDEAIEYVKFLQLQVQ----------ILESNTLEDRPAIVPT-----------DQILSLQGNMVHGLKR-------------------------------------------------KRNTNL---EGDSSTTLSLRAA------------------------------------------------------------ASPLILSEVLQQQLFKQKLCLVSISQCPPCTTSTPPPIVAPSIRRKN------------------------------------------------------------------------------------------------------------------------------------------------------------- [178] lcl|Ppa_ALC_3_1_unnamed_protein_product --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTGLKRRSFEGDDGDWMVDQMHLSQKVEKQHHQQQPEKALAFQESFGGYNVEVASTV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLTATYSDSLTIPSLMQPSPQPFLRSS------------------------------------------------------------------------------------------------------------------------------------GNCGAASPVDLDEFASMRA--------ILFRHASQPVPSLEEIASSRPKRRNVRIS-KDPQSVAAR----------------------HRRERISDRIRVLQ--RLVPGGTK-------MDTASMLDEAIHYVKFLKLQLQ----------TLEQIGNNGCD----------------PRSFLEQGGATEELAN-------------------------------------------LHELCEELRNMT---HASLSKT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ [231] 'gi|50920511|ref|XP 470616.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)] >gi|27311243|gb|AAO00689.1| Hypothet' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLRLRSMDQRGGAGGAAETHRVQLPDTATLSDVKAFLATKLSAAQPVPAESVRLTLNRSEELLTPDPSATLPALGLASGDLLYFTLSPLPSPSPPPQPQPQAQPLPRNPNPDVPSIAGAADPTKSPVESGSSSSMPQALCTNPGLPVASDPHHPPPDVVMAEAFAVIKSKSSLVVGDTKREMENVGGADGTVICRLVVALHAALLDAGFLYANPVGSCLQLPQNWASGSFVPVSMKYTLPELVEALPVVEEGMVAVLNYSLMGNFMMVYGHVPGATSGVRRLCLELPELAPLLYLDSDEVSTAEEREIHELWRVLKDEMCLPLMISLCQLNNLSLPPCLMALPGDVKAKVLEFVPGVDLARVQCTCKELRDLAADDNLWKKKCEMEFNTQDTCGCMMCKCIYSDQRKDIVLADKYTCGNYMQKPVTQPGRWLIILVYHSLLCQYITIGLSLLWYHLVDLVQDAPAAGIHFDCIIPLPINPYQLPPSAGACCSTTQASASAKDGGNMYSPPCSAAASSQ--------------------------------------------------------------------GHCFAVGANQLASLDLAMDFDEPILFPVHNASLQEGIQFYNPTGDTQLSRNMSIDKCLKGSKRKGSGEGSSSLHSQEETGEMP-QRELSMEHAGEKAGDADASREEYVHVRAKRGQ---A-TNSHSLAER----------------------FRREKINERMKLLQ--DLVPGCNKI------TGKAMMLDEIINYVQSLQRQVE----------FLSMKLSTISPELNSDLDLQDILCSQDARSA-------------------------------------------------------FLGCSPQLSNAH---PNLYRAAQQCLSPPGLYGSVCV-----------------------------------------------------------------------PNPADVHLARAGHLASFPQVYI------------------------------------------------------------------------------------------------------------------------------------------------------------------ [776] lcl|Ppa_ALC_22_1_unnamed_protein_product -------------------------------------------------------------------------------------MLQV----------------------------------------------------------------------------------------------------------------------------------------------------DSRGSPMTVGHVEMMAALNADPYKSLGNYELTQLVQLYSTYYQDPYPYSNLSFSDSVTFQPDVSLPTSSDCLQV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSSSGSDSLSTTETWRSETSGGCAPSSYENVLTNLNESSSVTLVRDSHDSNFQPQRPHLDMLKHDQAVSLPPVHEMWIQNQIQAGVGRNTLHTVLALTQDMPSYDVLPVKSSSDPPTFKRPRTWGEALQQGSAHCDSLRHSLASKTSPTLDSTQLSSLSRSIPSRQFSFQGKLSPSHL-----SGAGGSTYSRLPGLPEEGRLCNGKPAAT---S-VEPQSVAAR----------------------HRRKKISERIRVLE--KLIPGGNK-------MDTATMLDEAIEYVKFLQLQVQ----------ILESDTLDNAPLTASN-----------GQNLPLQGSRAKQGLK------------------------------------------------RKGDTSL---GGDSSPALSVRAA------------------------------------------------------------TSPLILSEVLQQQLFKQKLCLVSIRQCPPRAASTQAAAAPSVLRKN-------------------------------------------------------------------------------------------------------------------------------------------------------------- [436] 'gi|77556450|gb|ABA99246.1| Helix-loop-helix DNA-binding domain, putative [Oryza sativa (japonica cultivar-group)]' ---------------------------------------------------------------------------------MMSFPYSS----------------------------------------------------------------------------------------------------------------------------------------------------GDLGEATTAAAAAVDMITLDQMFRDYDASTGDDLFELVWESCGGGEIDSGAGE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VQPAGVPCCRRLLPGSSPEPTSEDEMA--------------------------------------------------------------------A------------------------------------------------WLSTIVTGSGGGGGDDVAAGGDHQDPAVKKPDGE-----PLTEKMDKKLPTRTEERRRVKHKARRNP---GYAETHGLTEK----------------------RRRSRINEKFKMLQ--RLVPGCDK-------CSQSSTLDRTIHYMKSLQQQLQ----------AMYPTMVRPAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VYPVVQPPPAFAAGGPPAASQG-------------------------------------GLHRHRRLMVVVSVHHRCRCFRLGRQ--------------------------------------------------------------------------------------------------- [265] 'gi|26185713|emb|CAD58595.1| putative bHLH transcription factor [Arabidopsis thaliana]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RERINERMKTLQ--ELLPRCRK-------TDKVSMLEDVIEYVKSLQLQIQ----------MMSMGHGMMP-----------------PMMH--EGNTQQFMPH---------------------------------------------------MAMG---MKGMNRPPPFVPFP-----GKTFPRPGHMAGVGPSYPALRYPFPDTQASDLSRVHVPSLHSNPVPNQPRFPAY--------------------INPYSQFVGLHQMQQP----------------------------------------------------------------------------PLPLQGQPTSQPSFSHASTSK----------------------------------------------------------------------- [175] lcl|Smo_ALC_15_1_unnamed_protein_product --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIQQQENAPRAGDDRHVPEQELARGARLAPCSDDDHTDIDMIDRR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELCSSKEQPKLMEVEASPPVAASHQSN--------------------------------------------------------------------K-------------------RQRGCFTLQNVSESLQHHSVIFHNVGVAAKLSEAMLLQINSSVARNPSPVSPVAASARNPSST-----ITSSSATTTTSTGSGGGGHGSFSYRFKE---T-VEPQSIAAR----------------------QRRKKISERVRELE--KLVPGGNK-------LDTASMLDEAIRFVKFLQIQVQ----------LLEAVGNGGHGNYGANNHCLNVPLNHQARMFPFSSSPSSSIAI-------------------------------------------------------------------------------------------------------------------------------------------------------SSPCSSSSSSSSSSCASSSCNLASMAIAT---------------------------------------------------------------SSVVAMSPASIADSVLLLGSRRSSSASSSSPLVLTETLQHALFKHKRCVATIQQCPVEHLLL------------------------------ [352] 'gi|527657|gb|AAA80173.1| myc-like regulatory R gene product' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKHVMSER----------------------KRREKLNEMFLALK--SLVPSIHK-------VDKASILAETIAYLKELQRRVQ----------ELESSREPMISR---------------------PSETRKVTRRHDDDEPVTKGSGSKRKGSELGSGVAREHPTKDDTTNVTVTISNKEVLVEVQCRWK---ELMMTRVFDA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [139] 'gi|79340401|ref|NP 172483.4| DNA binding / transcription factor [Arabidopsis thaliana] >gi|46931340|gb|AAT06474.1| At1g10120 [A' --------------------------------------------------------------------------MGGESNEGGEMGFKH----------------------------------------------------------------------------------------------------------------------------------------------------GDDESGGISRVGITSMPLYAKADPFFSSADWDPVVNAAAAGFSSSHYHPSMAM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNPGMSCFSHYQPGSVSGFAADMPASLLPFGDCGGGQIGHFLGSDKKGERLIRAGESSHEDHHQVSDDAV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGASPVGKRRLPEAESQWNKKAVEEFQ-----------------------------------------------------------------------------------------------------------------------------EDPQRGNDQSQKKHKNDQSKETVNKE------------SSQSEEAPKENYIHMRARRGQ---A-TNSHSLAER----------------------VRREKISERMRLLQ--ELVPGCNKI------TGKAVMLDEIINYVQSLQQQVE----------FLSMKLATVNPEINIDIDRILAKDLLQSRDRNTPTLGLNPFAG-----------------------------------FQGNIPNLSATTNPQYNPLP---QTTLESELQNLYQ----------------------------------------------------------------------------MGFVSNPSTMSSFSPNGRLKPEL--------------------------------------------------------------------------------------------------------------------------------------------------------------------- [366] 'gi|2335192|gb|AAB72192.1| bHLH protein [Arabidopsis thaliana]' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATGENR-TVPDNLKKQLAVSVRNIQWSYGIFWSVSASQPGVLEWGDGYYNGDIKTRKTIQAAEVKIDQ--------------LGLERSEQLRELYES-------------LSLAESSASG---SSQVTRRASAAALSPEDLTDTEWYYLVCMSFVFNIGEGIPGGALSNGEPIWLCNAETADSKVFTRSLLAKSASLQTVVCFPFLGGVLEIGTTEHIKEDMNVIQSVKTLFLEAP-PYTTI-STRSDYQ--EIFDP---LSDDKYTPVFITEAFPTTS----TSGFEYEPE----DHDSFIND-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGASQVQSWQFVGEEISN-----------------------------------------------------------------------------------------------------CIHQSLNSSDCVSQTFV-GTTGRLACD--------------------------------------------------------------------PRKSRIQRLGQIQEQSNHVNM------DDDVHYQGVISTIFKTTHQLILGPQFQNFDKRSSFTRWKRSSS----VKTLGEKSQ-----KMIKKILFEVPLMNKKRRVV--TGHTRG---K-PGNHALSEK----------------------KRREKLNERFMTLR--SIIPSISK-------IDKVSILDDTIEYLQDLQKRVQ----------ELESCRESADTETRIT----------M-MKRKKPDDEEERASA--NCMNSK----RKGSDVNVGEDEPADIGYAGLTDNLRISSLGNEVVIELRCAWR---EGILLEIMDVISDLNLDSHSVQSSTGDGLLCLTVNCKHK------------------------------------------------------GTKIATTGMIQEALQRVAWIC------------------------------------------------------------------------------------------------------------------------------------------------------------------- [597] 'gi|15222504|ref|NP 176552.1| EGL3 (ENHANCER OF GLABRA3); DNA binding / transcription factor [Arabidopsis thaliana] >gi|42571979' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATGENR-TVPDNLKKQLAVSVRNIQWSYGIFWSVSASQPGVLEWGDGYYNGDIKTRKTIQAAEVKIDQ--------------LGLERSEQLRELYES-------------LSLAESSASG---SSQVTRRASAAALSPEDLTDTEWYYLVCMSFVFNIGEGIPGGALSNGEPIWLCNAETADSKVFTRSLLAKSASLQTVVCFPFLGGVLEIGTTEHIKEDMNVIQSVKTLFLEAP-PYTTI-STRSDYQ--EIFDP---LSDDKYTPVFITEAFPTTS----TSGFEQEPE----DHDSFIND-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGASQVQSWQFVGEEISN-----------------------------------------------------------------------------------------------------CIHQSLNSSDCVSQTFV-GTTGRLACD--------------------------------------------------------------------PRKSRIQRLGQIQEQSNHVNM------DDDVHYQGVISTIFKTTHQLILGPQFQNFDKRSSFTRWKRSSS----VKTLGEKSQ-----KMIKKILFEVPLMNKKEELL---PDTPE---E-TGNHALSEK----------------------KRREKLNERFMTLR--SIIPSISK-------IDKVSILDDTIEYLQDLQKRVQ----------ELESCRESADTETRIT----------M-MKRKKPDDEEERASA--NCMNSK----RKGSDVNVGEDEPADIGYAGLTDNLRISSLGNEVVIELRCAWR---EGILLEIMDVISDLNLDSHSVQSSTGDGLLCLTVNCKHK------------------------------------------------------GTKIATTGMIQEALQRVAWIC------------------------------------------------------------------------------------------------------------------------------------------------------------------- [596] 'gi|22327493|ref|NP 680372.1| GL3 (GLABRA 3); transcription factor [Arabidopsis thaliana] >gi|17224395|gb|AAL36964.1| bHLH-trans' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATGQNRTTVPENLKKHLAVSVRNIQWSYGIFWSVSASQSGVLEWGDGYYNGDIKTRKTIQASEIKADQ--------------LGLRRSEQLSELYES-------------LSVAESSSSGVAAGSQVTRRASAAALSPEDLADTEWYYLVCMSFVFNIGEGMPGRTFANGEPIWLCNAHTADSKVFSRSLLAKSAAVKTVVCFPFLGGVVEIGTTEHITEDMNVIQCVKTSFLEAPDPYATILPARSDYHIDNVLDPQQILGDEIYAPMFSTEPFPTASPSRTTNGFDQEHEQVADDHDSFMTE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RITGGASQVQSWQLMDDELSN-----------------------------------------------------------------------------------------------------CVHQSLNSSDCVSQTFVEGAAGRVAYG--------------------------------------------------------------------ARKSRVQRLGQIQEQQRNVKTLSFDPRNDDVHYQSVISTIFKTNHQLILGPQFRNCDKQSSFTRWKKSSSSSSGTATVTAPSQ-----GMLKKIIFDVPRVHQKEKLMLDSPEARD---E-TGNHAVLEK----------------------KRREKLNERFMTLR--KIIPSINK-------IDKVSILDDTIEYLQELERRVQ----------ELESCRESTDTETRGT----------MTMKRKKPCDAGERTSA--NCANNETGNGKKVSVNNVGEAEPADTGFTGLTDNLRIGSFGNEVVIELRCAWR---EGVLLEIMDVISDLHLDSHSVQSSTGDGLLCLTVNCKHK------------------------------------------------------GSKIATPGMIKEALQRVAWIC------------------------------------------------------------------------------------------------------------------------------------------------------------------- [637] 'gi|6693022|gb|AAF24948.1| T22C5.19 [Arabidopsis thaliana]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDVFVDGELESLLGMFNFDQCSSSKEERPRDELLGLSSLYNGHLHQHQHHNN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLSSD--------------------------------------------------------------------HHAFLLPDMFPFGAMPGGNLPAMLDSWDQSHHLQETSSLKRKLLDVENLCKTNSNCDVTRQELAKSKKKQRVSSESNTVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGT---A-TDPQSLYAR----------------------KRREKINERLKTLQ--NLVPNGTK-------VDISTMLEEAVHYVKFLQLQIK----------VCRLLKGFFVF--------------------------------------------------------------------------------------S---QNLIITHVQLLSSDDLWMYAPLAYNGLDMGFHHNLLSRLM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [279] lcl|Smo_ALC_10_1_unnamed_protein_product ?PSLVPIFVKSDPILHPSSWPPLEIVEESQAGDVFYANPLVDCHGVGFDFHPADRRQGLSWAMQSPLADEILLRCEALPDLEADIPEAR----------------------------------------------------------------------------------------------------------------------------------------------------FLKNEPIRFAGFLDDVTTSSSGSVVEDCCDFDQIMAPVAPQPQIFHSLGGSSACPSSWFGSD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QNPRSSGNEDLEAALGNGTSYDEPPKK--------------------------------------------------------------------L------------------------------------------------LKTSRIEAREWDDHDQGFKRKNKEEEEEQEEELD-----QESDLHPAEKKRSCQRSSRQQQQREPWS---S-IDPQSVAAR----------------------RRRKRISERVRWLE--KLIPGGSK-------MDTASMLGEAIRYVKFLQLQVE----------LLEMIGGGDEDHHRPP--------------------------------------------------------------------------------------------------------------------------------------------------------------NSPLVLSEELQEVLFRKRCCVAAIKQST-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- [339] 'gi|79590003|ref|NP 849863.2| transcription factor [Arabidopsis thaliana] >gi|15221563|ref|NP 177058.1| transcription factor [Ar' -------------------------------------------------------------------MDLSAKDEFSAEKRNPDNYDSV----------------------------------------------------------------------------------------------------------------------------------------------------NNPSGDWRVDSYPSENLISAGPASCSPSQMMDSFGQTLWYDPTSVQAVGYAGFNGGNASSSSFRGSIDRSLEMG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WNLPNLLPPKGNGLFLPNASSFLPPSMAQFPADSGFIERAARFSLFSGGNFSDMVNQPLGNSEAIGLFLQGGGTMQGQCQSNELNVGEPHNDVSVAVKESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KGRETSSNTKKRKRNGQKNSEAAQSHR---------------------------------------------------------------------------------------------------------------------------SQQSEEEPDNNGDEKRNDEQSPNSPGKK-----SNSGKQQGKQSSDPPKDGYIHVRARRGQ---A-TNSHSLAER----------------------VRREKISERMKFLQ--DLVPGCNKV------TGKAVMLDEIINYVQSLQRQVE----------FLSMKLATVNP-----------------------------------------------------------------------------QMDFNLEGLL---AKDALQLRAGSSS--------------------------------------------------------------------------------TTPFPPNMSMAYPPLPHGFMQQTLSSIGRTITSPLSPMNGGFKRQETNGWEGDLQNVIHINYGAGDVT------------------------PDPQAAATASLPAANMKVEP------------------------------------------------------------------------ [486] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-1237 1250-1251 1260-1266 1289-1298 1307-1676; END; BEGIN MacClade; Version 4.0 87; LastModified -1061834289; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '8' '490' '1' all; EditorPosition '60' '17' '901' '1613'; TreeWindowPosition '46' '6' '981' '1630'; ListWindow Characters closed Geneva '9' '50' '10' '273' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '52' '30' '968' '1620'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '805' '53' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '50' 001011001; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' 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