#NEXUS [MacClade 4.08 registered to Hirai, ERATO] BEGIN DATA; DIMENSIONS NTAX=8 NCHAR=836; FORMAT DATATYPE=PROTEIN SYMBOLS = " 1 2 3 4" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'gi|30689268|ref|NP 173925.3| PFT1 (PHYTOCHROME AND FLOWERING TIME 1) [Arabidopsis thaliana] >gi|32478899|gb|AAO39425.1| phytoch' MSSEVKQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSYCACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFSPPSGQAQPSNDLKRHCILITASNPHILPTPVYRPRLQNVERNENGDAQAESRLSDAETVASYFAKCSVSLSVVCPKQLPTIRALYNAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSHSATNLPQTQSPVKVDRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTSMAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRTGPPGGANVNLLNNLSQVRQVMSSAALAGAASSVGQSAVAMHMSNMISTGMATSLPPSQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQGMNQGSHSGAMMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVMGGQAFAQAPGRSQQGGGGGQPNMPGAGFMG [836] 'gi|12321507|gb|AAG50810.1| hypothetical protein [Arabidopsis thaliana]' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRTGPPGGANVNLLNNLSQVRQVMSSAALAGAASSVGQSAVAMHMSNMISTGMATSLPPSQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQGMNQGSHSGAMMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVMGGQAFAQAPGRSQQGGGGGQPNMPGAGFMG [534] 'gi|51091708|dbj|BAD36509.1| putative SMA-9 class B [Oryza sativa (japonica cultivar-group)]' MAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPIKMDTAATSVPVPTSNGNP----SVNGPMLTRQPNGV----VANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLI----NPIQQSIRPGGANVSILNNLSQHRSV-------------------------------------ATIISGGMPGI-PMSGTGQSIGSQQVVQNTGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSA-PAMMPTPGMAQQA--GVNSLGVTNSSAMNMPIVQHPNAQQQQQQQKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVPTQQQQQQQQN--QLQQQNQLQQHQLQNQLQQQHQLQQQLQQQQLQQLQQQQ--SQGHPL-QQQQMQQMQQQQQQQQIQQM----QQQQQMQQMQQQQQQPQQ--LQQQQ---QPQMQQQPQQQPQMVGGQQYMQGHGRTQQGKMAPQPSMPGGGYLS [769] 'gi|14190783|gb|AAF65166.2| putative phloem transcription factor M1 [Apium graveolens]' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMQNGIGMNQNMISGVGQSGISSANSTMMPTPGMGQQGQPGPQSLGMANNAAANMPLPSQTSNAMQSAQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPSTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISNQQQHQQQQHHPQLQHQQQLQQLQQQPQLQQQQQIPQLQQQQQIPQLQQQQ--QIPQLQ-QQIPQLQQQQQQQQQQISQI----QQQQQIPQMQPQQQQQAP--QMQQH---IPQMQQQPSQQQQMVGGQAYVQGQGRSQQGQVTSQPTMSGGGYLS [340] lcl|Smo_PFT1_3_2_unnamed_protein_product M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVCCFRCLSLVRIQQLARW-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SISSSLECCCDYTTAAACE---------YKGTLAGQRHGKPVPICSLEGYRQISSPETLAADWPLTMQIVRLIPQDYMSNREYQGKAELLVFRPLNQHGFLQQLADKKLCAVIQLPSQTLLLASADKPQRMIGMLFPGDTVVFKPQGQNPQPGGSMAGSGGTQIPGQS--------------------------------------------------------------------------------------------------------------------------------------YLL [182] lcl|Ppa_PFT1_1_1_unnamed_protein_product --MSQRQLVVAVEATGALA-------------ISEVFNHFVNNAQKNGSSPGEVALVVFKTHGSHSDFLLWQSGWTSSMDLFFKWLSALTFEGGGFSEAAVAEALAEALM-----------------HCLLIAASNPHPIPTPVMRPPVILLPTGQAELQSDKWWLADAETVAKAFPPCQVSLSVIAPRQLPLLRSIYNGAKRNPRAAD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGPDFSKQHLVLISEGFSEGPAAAALAADWPSTMQIVRLVEQRHMNSKECQGKAELLVFRLHSSHGFLLQLAEKKLCAVIQLPSQTLLLASFDKPDRMIGMLFPGDMVVFKPSKTSQQPRGAIAGTGQAMGQTLA----------------------------------------------------------------------------------------------------------------------------------------- [312] lcl|Ppa_PFT1_3_1_unnamed_protein_product -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQGILAGQRQQKPVPICKLEGYRQTSSSEKLAADWPPTMQIVRLIAQEYMNSKEYQGKAELLVFRPLSSHGFLVQLAEKKLCAVIQLPSQTLLLASTDKPGRMIGMLFPGDMVVFKPNVASQQPTGAMAGTGQAMGQTLGSNFQQMQQLNAQQMGPQQLNSQQLNAQQQMNAQQMGVQQMNPQQLNAAQQMNTQQQLN-----------AQQMGVQQMNPQQLNAAQQM-----------NTQQQLSAGMQQMNPQQ-------------------- [235] lcl|Smo_PFT1_9_1_unnamed_protein_product NQPQAQYLVLAVEATAALGPSWPLLRSEYLDKIARAFYGQDGNVQKDNGATLEMALVVFRGHDSYSGCLLQRSGWTPSLELFQLWLSSIDFSGGGFGEVAVAEGLAEALV--------------------------------------------------------------------CHISLSVVCPRQLPSLKNLYSVAKQNPRASDPSNEIAKHTQHLVLISESFLEAR------------------------------------------------------------------------------------------------------------------------------------------NCLRRVTQAPALAAVSMPPSPTSQQAAAPLTVQTTQPVPATAVPSVSTGTVPTTSGRQSQIMSNGNIPTSTVKI--------------------------------------------SVQGAGLGMPHRSIAAPSNSVGSAPNAGVMLPMSQPGQNPATGNAGVSHLVSNGVATTPPQQPANTKYTKLWQGTLAGQRHGKPVQICSLEGYRQTSSPETLATDWPLTMQIVRLITRDYMSKYQQEGKAELLVFRPLNQHGFLQQLADKKL-----LPSQTLLLASADKPQRMIGMLFPEVSLCLEAKLT----------------------------------------------------------------------------------------------------------------------------------------------------------DVG [427] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; EXSET * UNTITLED = 1-564 641-645 680-836; END; BEGIN MacClade; Version 4.0 87; LastModified -1060090183; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '1' '8' Geneva '12' '490' '1' all; EditorPosition '46' '6' '931' '1607'; TreeWindowPosition '46' '6' '981' '1630'; ListWindow Characters closed Geneva '9' '50' '10' '273' '366' 000; ListWindow Taxa closed Geneva '9' '50' '10' '177' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '52' '30' '968' '1620'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '833' '42' '115' '165'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '50' 001011001; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '255' '0' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END;