#NEXUS 
[MacClade 4.08 registered to obaramari, ERATO hasebe project]


BEGIN DATA;
	DIMENSIONS  NTAX=34 NCHAR=4741;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=- ;
MATRIX
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'gi|15229153|ref|NP 190519.1| RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); nucleic acid binding [Arabidopsis thaliana] >gi|6899955|emb'    --------------------------MGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGNMKKSVVTQVSIGGFGES----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAKQLTD-YLEDEVG-IVWRCRLKTSWTPPGSYPNFEI----ADTSNIPSIDEYKKVEPHA-----------------------------FVHFA-VFESAGRAMDAAGQ--CNL-IL----------------------------------------DGQPLKV------------------------------------SLGPKNPYSLNQRRRT----------------TVPYKLAGITLEIGTLVSR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDFFV------SWRA------EGVDFLVDPFDNTCKFCFRKS-------TAFSFKDAVMHAVINCDYKLELL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRDIQTVRQYK-TL---------HGF-----VLILQLASSPRVWYR---------------------TAD-DD-------------------------IYDTVPGDLLDDDDPWIRTTD----------FT----------QVGAIGRCHSYRVLIS-P--------RYENKLRTALDYFRMRRVQ--EERVRWPPR--------------------------------------------------------------IRNEPCFGEPVSD-----HFFCIH------------HKEGISFEIMFLVNSVLHRGVFNQ-FQL----------------------------------TERFFDLLRN-------Q---PKDVNIASLKHLCTY-----KR---------PVFDAYKRLKLVQ---------EWIQKNPKLLGSHE-Q----S----------EDISEIRRLVITPTRAYCL----PPEVELSNRVLRRYK-AVAERFLRVTFMDESM------------------------------------------QTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKL-------CGRKYSFL-AFSA-----------------NQLRDRSAWFFA--EDG-------------------------------------------------------K--TRVSDIKTWMG---KFKD-----K--NVAKCAARMGL-----CFSSTYAT---------------VDV-MPHEVDTE---VPDIE------------------RNG---YVFSDGIGTITPDLADEVMEKLK-------------------LD-----------------VH----YSPCAYQIRY----AGFKGVVARWPS-------------------------KS----------DGIRLALR-DSMKKF-----FSK----------------------------HTI-LEICSW-----------TRFQPGFLNRQIITLLSVLGVPDEI---------FWDMQESMLYKL--------NRILDDTDVAFEVLTASC--A--E---Q--------------------GNTAAIMLSAGFKPK--TEPHLRGMLSSVRIAQL-WGLREKSRIFVTS--GRWLMGCLDEAG--ILEHG---------------------QCFIQVSKPSI--------------ENCFSKHGSRFKET--------KTDLEVVKGY-VAIAKNPCLHPGDVRILEAVDV-----------------PQ------------L--HH-----MYDCLIFPQKGD----RPHTNEASGSDLDGDLYFVAWDQKL--IPPNR-KSYPAMHYDA---AEEK---------------SLGRAV------------------------NHQDIIDFFAR--NLANE---------------------------------------------------------------------------------QLGTICNAHVV-HA---DR-----------SEYGAMDEECLLLAELAATAVDFPKTGKI---------VSMPFH--------------LKPKLY-PDFMGK-ED--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQT---YKSN------------------------------KILGRLYRRVKEVYDED---AEA----SSEE-STDPSAIP--YDAVLEI---------------------------------------------------------PGF----------EDLIPEAWG-HKCL------YDGQLIGLLGQYKVQ-----------------------------------------------------------------KEEEIVTGHIWS---MPKYTSK-------KQGELKERLKHSYNSLKKEFR----------------------------------------------------------------KVFEE---TI---------------PDHENLSEEEK--------------------------N--ILYEKKASAWYHVTYHPEWVKKSLE--L-QDPDESS------------HAAML--SFAWIA---A---------------------------------------------DYL-----------------------------------------------------------------------------------------------ARIKIRSREMGSIDSAKPVDSLAKFLAQR--L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1196]
'gi|8248473|gb|AAF74208.1| RNA-dependent RNA polymerase [Arabidopsis thaliana]'                                    --------------------------MGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGNMKKSVVTQVSIGGFGES----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAKQLTD-YLEDEVG-IVWRCRLKTSWTPPGSYPNFEI----ADTSNIPSIDEYKKVEPHA-----------------------------FVHFA-VFESAGRAMDAAGQ--CNL-IL----------------------------------------DGQPLKV------------------------------------SLGPKNPYSLNQRRRT----------------TVPYKLAGITLEIGTLVSR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDFFV------SWRA------EGVDFLVDPFDNTCKFCFRKS-------TAFSFKDAVMHAVINCDYKLELL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRDIQTVRQYK-TL---------HGF-----VLILQLASSPRVWYR---------------------TAD-DD-------------------------IYDTVPGDLLDDDDPWIRTTD----------FT----------QVGAIGRCHSYRVLIS-P--------RYENKLRTALDYFRMRRVQ--EERVRWPPR--------------------------------------------------------------IRNEPCFGEPVSD-----HFFCIH------------HKEGISFEIMFLVNSVLHRGVFNQ-FQL----------------------------------TERFFDLLRN-------Q---PKDVNIASLKHLCTY-----KR---------PVFDAYKRLKLVQ---------EWIQKNPKLLGSHE-Q----S----------EDISEIRRLVITPTRAYCL----PPEVELSNRVLRRYK-AVAERFLRVTFMDESM------------------------------------------QTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKL-------CGRKYSFL-AFSA-----------------NQLRDRSAWFFA--EDG-------------------------------------------------------K--TRVSDIKTWMG---KFKD-----K--NVAKCAARMGL-----CFSSTYAT---------------VDV-MPHEVDTE---VPDIE------------------RNG---YVFSDGIGTITPDLAGEVMEKLK-------------------LD-----------------VH----YSPCAYQIRY----AGFKGVVARWPS-------------------------KS----------DGIRLALR-DSMKKI-----FSK----------------------------HTI-LEICSW-----------TRFQPGFLNRQIITLLSVLGVPVEI---------FWDMQESMLYKL--------DRILVDTDVAFEVLTASC--A--E---Q--------------------GNTAAIMLSAGFKPK--TEPHLRGMLSSVRIAQL-WGLREKSRIFVTS--GRWLMGCLDEAG--ILEHG---------------------QCFIQVSKPSI--------------ENCFSKHGSRFKET--------KKDLEVVKGY-VAIAKNPCLHPGDVRILEAVDV-----------------PQ------------L--HH-----MYDCLIFPQKGD----RPHTNEASGSDLDGDLYFVAWDQKL--IPPNR-KSYPAMHYDA---AEEK---------------SLGRAV------------------------NHQDIIDFFAR--NLANE---------------------------------------------------------------------------------QLGTICNAHVV-HA---DR-----------SEYGAMDEECLLLAELAATAVDFPKTGKI---------VSMPFH--------------LKPKLY-PDFMGK-ED--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YQT---YKSN------------------------------KILGRLYRPVKEVYDED---AEA----SSEE-STDPSAIP--YDAVLEI---------------------------------------------------------PGF----------EDLIPEAWG-HKCS------YDGQLIGLLGQYKVQ-----------------------------------------------------------------KEEEIVTGHIWS---MPKYTSK-------KQGELKERLKHSYNSLKKEFR----------------------------------------------------------------KVFEE---TI---------------PDHENLSEEEK--------------------------N--ILYEKKASAWYHVTYHPEWVKKSLE--L-QDPDESS------------HAAML--SFAWIA---A---------------------------------------------DYL-----------------------------------------------------------------------------------------------ARIKIRSREMGSIDSAKPVDSLAKFLAQR--L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1196]
'gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]'                                    --------------------------MGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGSEKDLVVTQISVGGFDND----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNAKMLSE-YLEEQVG-QVWRCRLKISATPPDSYPTYDV-----DAARVHRMKDYEKVVPHA-----------------------------FVHFA-SSESAKYALAAAGG--NGL-IL----------------------------------------GKKPLIV------------------------------------SLGPENPYRLNQRRRT----------------TMPFKFSDVSVEMGVLVSK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDFVV------GWRG----PRTGVDFFVDPFNGACKILFTKD-------TAFSFRGEAKHAIIKCNFKIEFM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VREINEIKKFK-DF---------TSL-----VILLQLASSPLVFYR---------------------TAD-DD-------------------------IEESVAFDLLDDDDQWIRTTD----------IT----------GSGAIGRCNTYRISIR-P--------RNGPSFEKAMAYFSFHRVPMVEMCNRKMLR--------------------------------------------------------------VRDEPDFGVSMSD-----PFFCFQ------------N-EGISFKVMFLVNAVLHKGIVNQ-HQM----------------------------------TNEFFYLLRS-------H---QEEVNLAALKHMFSY-----KW---------PVNDAIQKLVGIQ---------KWLLKNPKLLERTG-E----L----------DDIVEVRRLVITPTKAYCL----PPTVELSNRVLRNYK-HVADRFLRVTFMDEGM------------------------------------------RNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHL-------CGRKYSFL-AFSA-----------------NQLRDRSAWFFA--EDP-------------------------------------------------------K--IRVPGIISWMG---RFSN-----R--NVAKCAARMGQ-----CFSSTYAT---------------VEV-PSSEVNSE---LPDIE------------------RNG---YVFSDGIGMISADLALEVAEKLH-------------------LS-----------------V-----NPPSAYQIRY----AGCKGVVACWPT-------------------------KN----------DGILLSLR-PSMKKF-----DSN----------------------------HTI-LEICSW-----------TRFQPGFLNRQIVTLLSSLDVKDGI---------FWEMQKEMISGL--------NKMLVDSDVAFDVITASC--A--E---A--------------------GNTAAIMLSAGFKPQ--SEPHLRGMLSSIRASQL-GDLRNKARIFVPS--GRWLMGCLDELG--ELEQG---------------------QCFIQVSSPSL--------------ENCFIKHGPKFSDI--------KKNLQVVKGL-VVIAKNPCLHPGDVRILEAVDV-----------------PG------------L--HH-----LYDCLVFPQKGD----RPHSNEASGSDLDGDLYFVTWDENL--IPPSK-KSWIPMNYEP---AEVK---------------QLGRQV------------------------NHMDIIDFFSK--NMVQE---------------------------------------------------------------------------------SLGEICNAHVV-HA---DL-----------SEFGALDEKCLKLAELAALAVDFPKTGKL---------VTMPFD--------------LKPKMY-PDFMGK-EE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FQS---YKSK------------------------------KILGKLYRQVKDVCDTE---GEV----SAGL-ELVPNDIP--YDSSLEI---------------------------------------------------------PGS----------TVFMGDAWN-CKCS------YDGQLHGLLGQYKVN-----------------------------------------------------------------REEEVVTGHIWS---MPKYSAK-------KQGELKERLKHAYNMLRKEFR----------------------------------------------------------------NVFER---MD---------------PDFDLLPDDEK--------------------------N--DMYERKASAWYQVTYNPHWVARSLE--L-QLPDAVS------------STVML--SFAWIA---A---------------------------------------------DYL-----------------------------------------------------------------------------------------------ARINIRHRGLQYSDSTKPINSLGRYLVDN--I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1197]
'gi|34913398|ref|NP 918046.1| putative RNA-directed RNA polymerase [Oryza sativa (japonica cultivar-group)] >gi|21328146|dbj|BAC'    --------------------------MRSPRGGAAAQPSGRRG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DTTAAAAGDLVTTQVSLGGFDAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAAGDLAD-FLEHEVG-LVWRCRVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPHA-----------------------------FVHFA-RPEGARRAADLAGE--TRL-IL----------------------------------------RGKPLRV------------------------------------ASAPDSSLRVS-RRSS----------------IAPFRFPDVRLEVGALPSP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAFLA------AWRG----PDAGLDLSVDPFDGCCRLVFTRD-------TAFTFPGFREVAAIRCDVKLEFP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRDVLEVRLYR-L-----------DC-----SLLLRLAAAPLVHYR---------------------TAD-DD-------------------------FHEPVPFDLLDDDDPWIRTTD----------IT----------PSGAIGRCGVYRISFS-A--------RFWPKMDRALDYMRERRVAIVDCGGGWGPRRG----------------------------------------------LT------------VRDELEFGEPMQD-----VFFCLQ------------HAEGLKFPLLFMVNALVHKGIINQ-HQL----------------------------------TPEFFSLLGR-------S---EENVNVAALRDFWGD-----KF---------PVFDACGRLKKAL---------NRVARNPKLLCS-K-V----G----------DDHAEVRRLVITPTRAYCL----PPEVERSNRVLRHYH-EVADRFLRVTFMDEGM------------------------------------------QVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHM-------CGRKYSFL-AFSS-----------------NQLRDKSAWFFA--EDR-------------------------------------------------------K--TTVEAIRKWMG---RFTS-----K--NVAKHAARMGQ-----CFSSTYAT---------------VTM-RPDEVDES---FDDVV------------------HNE---YIFSDGIGKITPDLALEVAERLQ-------------------L------------------TD----NPPSAYQIRF----AGFKGVIAVWQG-------------------------HG----------DGTRLFLR-PSMRKF-----ESN----------------------------HLV-LEVVSW-----------TKFQPGFLNRQIIILLSSLNVPDSI---------FWQMQETMLSNL--------NNILSDRDVAFEVLTTSC--A--D---D--------------------GNTAALMLSAGFEPR--TEPHLKAMLLAIRSAQL-QDLLEKARIFVPK--GRWLMGCLDELG--VLEQG---------------------QCFIRATVPSL--------------NSYFVKHGSRFSST--------DKNTEVILGT-VVIAKNPCLHPGDVRILEAVDV-----------------PE------------L--HH-----LVDCLVFPQKGE----RPHANEASGSDLDGDLYFVTWDEKL--IPPGK-KSWNPMDYSP---PEAK---------------QLPRQV------------------------SQHDIIDFFLK--NMISE---------------------------------------------------------------------------------NLGRICNAHVV-HA---DL-----------SEYGAMDEKCIHLAELAATAVDFPKTGKL---------AIMPPH--------------LKPKVY-PDFMGK-ED--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQS---YKSE------------------------------KILGRLYRSIQEASNGD-----V----VSQE-VCTPNDLP--YDIDLEV---------------------------------------------------------PGA----------SDFLASAWQ-CKCS------YDAQLSALLSQYRVR-----------------------------------------------------------------TEAELVTGHITF---LVKNSSK-------KQGDIKDRLKTAYSALRKEFK----------------------------------------------------------------STFES---IA---------------SDQCEIGDDEK--------------------------N--LLYEMKASAWYQVTYHPKWVEKSRG--I-LGPDGEE------------IPASL--SFAWIP---V---------------------------------------------DYL-----------------------------------------------------------------------------------------------ARIKLRCHGKVRVEGQKPVERLAAYISER--I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1218]
lcl|Ppa_RDR6SDE1SGS2_2_1_unnamed_protein_product                                    --------------------------MTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P-WISGEV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IELRRVQLQLGTLIGP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QDFLL------SWRV----PGYECSLRISKKRGKTFLFFSYD-------KVMSPNLQDTEP---CEFKLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKEVRKIQTQRGRM---------PEM-----MIVMQLFSPPLISYR---------------------TSQGDG-------------------------VYCTTPVPLPDDEDPWIRTVD----------FS----------PHRSIGRCLTYIISVR-P--------TEYTPFRRMMDFFMEQRLC-----------------------------------------------------------GS------------VLQNLNFLYEEIDCKKGQNYFFVH------------HQKGVPFELMFLVNALVHRGIINM-TSL----------------------------------TQEFYETVM--------S---DRAVSLFALQHMLTY-----TH---------PVFNAVLRVQQVQ---------EWTRKNDKFRQGEKAL----A----------FGSILMYRVLFTPTRGICT----LPVVSRSNRVLRHYH-TLSDRFLRVSFVDEDL------------------------------------------HQISPGSLTVPVSRSVRCLSSTYEYNRTEIHRRILDIVENGFKL-------CGRQYSFL-AFSS-----------------SQMRGGSAWFFA--STG-------------------------------------------------------N--VNTHLIRQWMG---KFPS-----Q--NVAKYAARMGQ-----CFSCSFPT---------------LPV-LKAMV-RK---LPDVV------------------RNG---YIFSDGCGMIAPDFALRVSLSLK-------------------L-------------------D----YTPSVYQIRY----AGYKGVVSTWPI-------------------------PG----------RHSHLGLR-DSMKKF-----ESG----------------------------HTE-LEVVNW-----------SKYLPCYLNRQIICLLSTLKVENAV---------FKSLQDAQVARL--------KAMLGDPNQAYEIVTTSC--S--D---S--------------------HSTAATMLRGGFLPL--KEPHLYELLVSIKFSLL-EDLVSKARIFVPN--GRWVIGCMDETG--LLNYG---------------------QCFIHVSGPVS--------------KACLGGDGNNLGHS--------GL-LQVITGK-VIMVKNPCLHPGDIRILEAVDL-----------------PE------------L--HS-----MVDCLVLPQNGP----RPHPNEVSGSDLDGDVYFTCWDPNL--IPPSG-ESWEPMEYAA---HDSK---------------ILYRPA------------------------NIKDVKNFFVN--SMMND---------------------------------------------------------------------------------KLGFISNAHVA-RA---DK-----------SPEGALDSDCLRLAHLASIAVDFPKTGKN---------ATMPHD--------------LRVNEW-PDFMEK-EG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVT---YQSN------------------------------KVIGELYRSVTKFLKAE---VEQ----HQHADNAVDLDSI--YDYDLQV---------------------------------------------------------PGY----------EVYLDDAWT-KKIS------YDRQLRCMMTHFNVQ-----------------------------------------------------------------REAALIASWLKR---GSPGLRS-------VNRNRGDAFAQSYGVLYEEFR----------------------------------------------------------------AQFEG---LKKGLDPDGYS------EDMVESSSSEI--------------------------KGPTDFAAKASAWYHVTYHPEWKQKALE--IFENSGESS------------PRPLL--SFPWIT---A---------------------------------------------SVL-----------------------------------------------------------------------------------------------SNIKLMKLLKVK---------------EK--E-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1070]
lcl|Smo_RDR6SDE1SGS2_8_1_unnamed_protein_product                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEMESPESGGYVELFVRNISYQCKRRAIR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GILEGVVGRESVISCELLSNDNGRSKGRAIVKLSTEHAAVVLHRAGLGLRFAGRKLVANVSNRVQHNPQ------------------------------------------------------------------------------------------------------------------------------------------------------------HPNARAGSAKLYCGNLAED------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QTVEYLWCSSQAKAEFFFSDP-------VK-------VELLVDGDYKMEII------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSSIASLESCKISP---------ENSP----GLVFQLYYPPRVYKR----------------------LENSC-------------------------SIFSYSRADICDDYLWARATD----------FT----------PDSALGQSVVFCLELPDS---------SQDELRKIIQKFNDYNLG----------------------------------------------------------------------------DYPPRFRRMVLRRGQPFSVRQ--LAVPVLSST-CGFDLPLEVEFKVNYLIQNGHVSP-AGL----------------------------------TREFFGLLSEN----------TPAWCLSALSNLERC-----EK---------TCLNPASQIRNYM---------RTTNRRRERYLGAVAAD--------------EGQIYVKRVLVTPLKVYFI----GPELEESNRVTRHFS-HKLDNFLRVTFVDEDF------------------------------------------DSLSSYVLS-----------SSRGRTNTEVYYRLLAILRLGIKL-------CGKDFQFL-AFSA-----------------SQLRENSLWMFA--DDD-------------------------------------------------------E--VTGEYIRQWMG---DFLS----IR--NVAKCAARMGQ-----SFSTSTRT---------------LDV-PRGEV-RQ---LSDVETFTPE-------------GHK---YCFSDGIGTISTEFATRVARRCR-------------------AS-----------------------TVPSAFQIRY----GGYKGVVAVDPA-------------------------SC------------FKLSLR-PSMSKF-----PSE----------------------------QTT-LDVLEK-----------TRYIPSYLNREIISLLSTLEVPDEV---------FERMQAHQVELL--------DRMLLDSAATYDVLRVLYAGE------C--------------------HKLLVSMVLAGFSPV--TEPYMRSLLQAFRAAQL-LSLEKKSRIFVPK--GRLLMGCLDEQR--VLRYG---------------------QCFVQVSPLQG---------------------VPVEEEIHCDRGVTARNQAFVVTGS-VVVAKNPCLHPGDVLVLEAVDV-----------------PE------------L--HH-----MVDCIVFPQQGP----RPHPNECSGSDLDGDQYFVSWDSAL--IPP---KRHPPMNYEA---PPAV---------------ELDHS----------------------------EIQEFFVN--WITSD---------------------------------------------------------------------------------SLGVIAHAHLA-LS---DW-----------SDLQARDPKCMELARLYSVAVDFPKTGVP---------AVMPPE--------------LRPEQY-PDFMEK-RN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRT---YIST------------------------------RVIGKLYRSIRE--SHR---DTN----TSPLVSERSFDQQ--YDRALVV---------------------------------------------------------QGY----------QSHLEEAKF-FKEC------YDSKLTSILNHYKV------------------------------------------------------------------SEAEIMSGSVRS---LARYSRR-------RQGDAMARVVLAAKALVKEAR----------------------------------------------------------------GWFDD----------------------GGEITENE--------------------------------ACAKAFAWYHVTYHPEARK---------------------------KSDLL--SFPWVVS------------------------------------------------DKL-----------------------------------------------------------------------------------------------VAIKKRNSARS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1102]
'gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Lycopersicon esculentum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSAEVVKS-FLEKYTG-YGTVCALEVKQSK---GGSRAF----------------------A-----------------------------KVQFA-DNISADKIITLA-N--NRL-YF----------------------------------------GSSYLKA------------------------------------WEMKTDIV-----QLR----------------AYVDQMDGITLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKFA--------VLG----S-TEVSIQFGIGLKKFFFFLSSG--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLIQLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQWVRTTD----------FP----------P-SWIGLSSSLCLQFRRG--------VRLPNFEESFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFVSQKSALVPNVQPP-EGISIPYKILFKISSLVQHGCIPG-PAL----------------------------------NVYFFRLVDPR-----RR---NVACIEHALEKLYYI-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTDLL-PK---AST-GS--GV-RTNIYERILSTLRKGFVI-------GDKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRAWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSRET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISGDFAHRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVGVDPD-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NIK-LDVLGW-----------SKYQPCYLNRQLITLLSTLGVKDEV---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYKPD--AEPFLSMMLQTFRASKL-LDLRTRSRIFIPN--GRTMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------GE-------FSDDLHPFNNSRSTNSNFILKGN-VVVAKNPCLHPGDIRVLKAVNV-----------------RA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIIANAHVV-FA---DR-----------EPDMAMSDPCKKLAELFSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTS---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----SIATFTRDVARRS--YDADMEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---ASKTFDR-------RKD--AEAISVAVRALRKEAR----------------------------------------------------------------AWFKR---RN------------------D---IDD--------------------------------MLPKASAWYHVTYHPTYWGCYNQ--G-----LK-------------RAHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKDKARN--RPVLNLSSLRAQLSHRLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1114]
'gi|47824908|gb|AAT38684.1| RNA-directed RNA polymerase [Solanum demissum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPAEVVKS-FLEKHTG-YGTVCALDVKQSK---GGSRAF----------------------A-----------------------------KVQFV-DNISADKIINLA-S--KRL-YF----------------------------------------GSSYLKA------------------------------------WEMKTDIV-----QV-----------------AYVDHMDGITLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKFA--------VLG----S-TEVSIKFGIGLKKIYFFLSRG--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLIQLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQWVRTTD----------FA----------P-SWIGLSSSLCLQFRRG--------VHLPNFQEKFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFISQKSSLVPNVQPP-EGIAIPYKILFKISSLVQHGCIPG-PAL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELL-PK---AST-GN--GI-RTNIYERILSTLRKGFVI-------GDKKIEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSKET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NNK-LDVLEW-----------SKYQPCYLNRQLITLLSTLGVKDDV---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIISNAHVV-FA---DR-----------EPDMAMSDPCKKLAELCSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDKPPD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----STAIFTRDVARRS--YDADLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDSKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---TSKTFDR-------RKD--AEAISIAVRALRKEAR----------------------------------------------------------------TWFKR---HN------------------D---IDD--------------------------------MLPKASAWYHVTYHPTYWGCYNQ--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKEKARN--RPVLNLSYLRAQLSRKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1114]
'gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGKTLQVSGFPAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNVHHVKD-LLEQIVG-LGKVCAVKLRPPKNISANSRSF----------------------A-----------------------------IVQFE-TEAHASLVVNAARG--NAL-RS----------------------------------------GSNYLKV------------------------------------RPAERDII----LKPR----------------TALFNLEDATLHFGCLLRE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVLS--------VLW----SGTGVSVEFGFAMKKIDFCLTYN--------L-------------KKYKLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YESIWEIQLYHPPG---------SQKK----FLLIQVMAAPKIYEQNLWHSGSMYDDPLFN-------------------------------------------YFRDDTDDQWTRTTD----------FT----------PLASIGQSYILCLELPAD--------CYLPNIREYFVYYKNHN------------------------------------------------------------------------------------HDFHCMRGHSY--SSNSCFVPIVKSQ-YFTDVPYEILFKINNLVQNGILSG-PTL----------------------------------DDNFYSLVSPG-----YV---CIDHIKHALENMSYL-----KK---------TCLNPINWLSEKY---------KEIQIS-RHMLTSPNIA-LDD----------DGLAYVYRVQITPAKVYFY----GPEINVSNRVVRNYS-ADLENFLRISFVDEDC------------------------------------------EKLRSTDLS-PR---SAP-GN--NASRTALYNRILSVLSNGITI-------GNKHFEFL-AFSS-----------------SQLRDNSAWMFA--SRT-------------------------------------------------------G--LSASDIREWMG---NFRN----IR--NVAKYAARLGQ-----SFSASTET---------------LKV-HKYEV-QA---LPEV---TN--------------GTK---YVFSDGIGTISADFADEVSRKCK-------------------LA------------------R----FTPSAFQIRY----GGYKGVVAIDPR-------------------------SH------------WKLSLR-SSMSKF-----PSE----------------------------NIT-LDVLAY-----------SKYQPCFLNRQLITLLSTLGVRDNI---------FELKQQAAVMQL--------NRLVTEPQAAIDAIELMPM-G--E---I--------------------TNVVKELLLCGYQPD--VEPYLSMILQTFRASKL-LELKTKSRIFIPE--GRAMMGCLDETR--TLKYG---------------------EVFIQAS------------------------------------NSANESDKFVVTGK-VVVAKNPCLHPGDIRILEAVYT-----------------PV------------L--DH-----MVNCVVFPQQGP----RPHPNECSGSDLDGDIYFVSWDPDL--IPT---RMVAPMDYTP---APTE---------------TLDHDV------------------------VIEEVHEYFAN--YIVNE---------------------------------------------------------------------------------SLGIIANAHVV-FA---DK-----------ESLKAESTQCIKLAELFSIAVDYPKTGVP---------AQIPSK--------------LHVREY-PDFMEK-LD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAT---YISK------------------------------GVIGKLYREIKK--QSP---H-------IGHFTKDVARRS--YDTDLIV---------------------------------------------------------DGY----------QDYITEAVW-FKGE------YDFKLGNLMEHYGIK-----------------------------------------------------------------SEAEIISGCILK---MAKNFTK-------SSD--ADAIRLAVKSLRKEAR----------------------------------------------------------------SWFSD---MS------------------A---DESG--------------------------DVHEASYAKASAWYHVTYHPEYYGCYNK--I-----YE-------------RPHLI--SFPWCV---Y---------------------------------------------DKL-----------------------------------------------------------------------------------------------LHIKQRKSLR--RRLLDLQN---GMRRNNILG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1115]
'gi|15223906|ref|NP 172932.1| RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding [Arabidop'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSAEEVKK-FLERLTG-SGTVYAIKVRQPK--KGGPRVY----------------------A-----------------------------IVQFT-SERHTRLIITAA-A--ERL-YY----------------------------------------GRSYLKA------------------------------------FEVEQDIV----PKPR----------------ASLHTISGLKMFFGCQVST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKFL--------TLW----SAQDVCVSFGIGMRKLHFSFSWY--------Q-------------KDYRLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQIDLHSPQG---------RSSK----FLVIQVIGAPKIFEKEDQPIN--LLFGIMD-------------------------------------------FYSDGSDEQWIRTTD----------FT----------SSSCIGQSTAFCLELPVH--------LNVPDFRENFANYAEHR------------------------------------------------------------------------------------ASSFLIESGSSYSSNANTLVPVVDPP-PGFSLPFEILFKLNTLVQNACLSG-PAL----------------------------------DLDFYRLLNQK-----KY---DRALIDHCLEKLFHL-----GE---------CCYEPAHWLRDEY---------KKWISK-GKLPLSPTIS-L-D----------DGLVYMYRVQVTPARVYFS----GPEVNVSNRVLRHYS-KYINNFLRVSFVDEDL------------------------------------------EKVRSMDLS-PR---SST-QR-----RTKLYDRIYSVLRDGIVI-------GDKKFEFL-AFSS-----------------SQLRENSAWMFA--PID-------------------------------------------------------R--ITAAHIRAWMG---DFDH----IR--NVAKYAARLGQ-----SFSSSRET---------------LNV-RSDEI-EV---IPDVEIISL--------------GTR---YVFSDGIGKISAEFARKVARKCG-------------------LT------------------E----FSPSAFQIRY----GGYKGVVAVDPN-------------------------SS------------KKLSLR-KSMSKF-----ESE----------------------------NTK-LDVLAW-----------SKYQPCYMNRQLITLLSTLGVTDSV---------FEKKQREVVDRL--------DAILTHPLEAHEALGLMAP-G--E---N--------------------TNILKALILCGYKPD--AEPFLSMMLQNFRASKL-LELRTKTRIFISG--GRSMMGCLDETR--TLEYG---------------------QVVVQYS------------------------------------DPMRPGRRFIITGP-VVVAKNPCLHPGDVRVLQAVNV-----------------PA------------L--NH-----MVDCVVFPQKGL----RPHPNECSGSDLDGDIYFVCWDQEL--VPP---RTSEPMDYTP---EPTQ---------------ILDHDV------------------------TIEEVEEYFAN--YIVND---------------------------------------------------------------------------------SLGIIANAHTA-FA---DK-----------EPLKAFSDPCIELAKKFSTAVDFPKTGVA---------AVIPQH--------------LYVKEY-PDFMEK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPT---YESK------------------------------NVIGKLFREVKE--RAP---PLI----SIKSFTLDVASKS--YDKDMEV---------------------------------------------------------DGF----------EEYVDEAFY-QKAN------YDFKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMR---MSKSFTK-------RRD--AESIGRAVRALRKETL----------------------------------------------------------------SLFNA---SE------------------E---EEN--------------------------------ESAKASAWYHVTYHSSYWGLYNE--G-----LN-------------RDHFL--SFAWCV---Y---------------------------------------------DKL-----------------------------------------------------------------------------------------------VRIKKTNLGR-----RQRQETLERLDHVLRFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1107]
'gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSAEAVKK-FLENHTG-NGTVYALEVKQSK---GGRRAF----------------------A-----------------------------KVQFA-NNKSAEFIIDLA-S--KGL-YY----------------------------------------GPSYLKA------------------------------------WEMKTDIV-----QPR----------------TYVEHMDGVTLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKFA--------VLG----S-KDVSIKFGIGLKKIYFFLSHA--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLLQLFGAPRIYKR--------LEDSCYS-------------------------------------------FFKETPDDQWVRTTD----------FT----------P-SWIGLSSSLCLEFRNG--------VQLPNFSESFFYYKESM------------------------------------------------------------------------------------NQFILQTGFTFSFSQKLALVPIVHLP-EGIELPYKILFKISSLIQHGCFPG-LAL----------------------------------NFNFFQLVDPR-----RR---NIACIEHALEKLYYL-----KE---------CCYDPVRWLTEQY---------DEYLKG-RQLPKSPPIT-L-D----------DGLVYVRRVVVTPCKVYFC----GPEVNVSNRVLRNYS-EDINNFLRVSFVDEEW------------------------------------------EKIHSTDLL-PR---AST-GN--GT-RTDIYERILSTLRNGFII-------GDKRFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFRQ----IR--NVAKYAARLGQ-----SFGSSRET---------------LSV-GRHEV-EV---IPDVACSLH--------------GTN---YIFSDGIGKISADFAHRVTIKCG-------------------L-------------------Q----YTPSSFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMLKY-----ESN----------------------------NIK-LDVLGW-----------SKYQPCYLNRQLVTLLSTLGVIDDV---------LEQKQNEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKEMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTRTRIFIPN--GRTMMGCLDESR--TLEYG---------------------QVFVQFSGAGR--------------RQ-------FFEESHPFNDSGSANCDFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDPDL--IPP---RQVQSMDYTP---APTT---------------QLDHDV------------------------TIEEVEEYFTN--YIIND---------------------------------------------------------------------------------SLGIIANAHVV-FA---DR-----------EPDMAMSDPCKQLAQLFSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMEK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPT---YPSE------------------------------KVIGKLFQKVKN--KTP---QAS----SIATFTRDVARKS--YDSDMIV---------------------------------------------------------DGF----------EDYIDEAFY-YKSE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---ASKTFDR-------RKD--AEAIGVAVRCLRKEAR----------------------------------------------------------------AWFKR---RS------------------D---IDD--------------------------------MLAKASAWYHVTYHHTYWGLYNE--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKAKARK--RPVPHLSSLGSQLSRKLVIW-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1116]
'gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVFGFPNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSAEEVKK-FLERLTG-SGTVYAIKVRQPK--KGGPRVY----------------------A-----------------------------IVQFT-SERHTRLIITAA-A--ERL-YY----------------------------------------GRSYLKA------------------------------------FEVEQDIV----PKPR----------------ASLHTISGLKMFFGCQVST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKFL--------TLW----SAQDVCVSFGIGMRKLHFSFSWY--------Q-------------KDYRLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQIDLHSPQG---------RSSK----FLVIQVIGAPKIFEKEDQPIN--LLFGIMD-------------------------------------------FYSDGSDEQWIRTTD----------FT----------SSSCIGQSTAFCLELPVH--------LNVPDFRENFANYAEHR------------------------------------------------------------------------------------ASSFLIESGSSYSSNANTLVPVVDPP-PGFSLPFEILFKLNTLVQNACLSG-PAL----------------------------------DLDFYRLLNQK-----KY---DRALIDHCLEKLFHL-----GE---------CCYEPAHWLRDEY---------KKWISK-GKLPLSPTIS-L-D----------DGLVYMYRVQVTPARVYFS----GPEVNVSNRVLRHYS-KYINNFLRVSFVDEDL------------------------------------------EKVRSMDLS-PR---SST-QR-----RTKLYDRIYSVLRDGIVI-------GDKKFEFL-AFSS-----------------SQLRENSAWMFA--PID-------------------------------------------------------R--ITAAHIRAWMG---DFDH----IR--NVAKYAARLGQ-----SFSSSRET---------------LNV-RSDEI-EV---IPDVEIISL--------------GTR---YVFSDGIGKISAEFARKVARKCG-------------------LT------------------E----FSPSAFQIRY----GGYKGVVAVDPN-------------------------SS------------KKLSLR-KSMSKF-----ESE----------------------------NTK-LDVLAW-----------SKYQPCYMNRQLITLLSTLGVTDSV---------FEKKQREVVDRL--------DAILTHPLEAHEALGLMAP-G--E---N--------------------TNILKALILCGYKPD--AEPFLSMMLQNFRASKL-LELRTKTRIFISG--GRSMMGCLDETR--TLEYG---------------------QVVVQYS------------------------------------DPMRPGRRFIITGP-VVVAKNPCLHSGDVRVLQAVNV-----------------PA------------L--NH-----MVDCVVFPQKGL----RPHPNECSGSDLDGDIYFVCWDQEL--VPP---RTSEPMDYTP---EPTQ---------------ILDHDV------------------------TIEEVEEYFAN--YIVND---------------------------------------------------------------------------------SLGIIANAHTA-FA---DK-----------EPLKAFSDPCIELAKKFSTAVDFPKTGVA---------AVIPQH--------------LYVKEY-PDFMEK-PD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPT---YESK------------------------------NVIGKLFREVKE--RAP---PLI----SIKSFTLDVASKS--YDKDMEV---------------------------------------------------------DGF----------EEYVDEAFY-QKAN------YDFKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMR---MSKSFTK-------RRD--AESIGRAVRALRKETL----------------------------------------------------------------SLFNA---SE------------------E---EEN--------------------------------ESAKASAWYHVTYHSSYWGLYNE--G-----LN-------------RDHFL--SFAWCV---Y---------------------------------------------DKL-----------------------------------------------------------------------------------------------VRIKKTNLGR-----RQRQETLERLDHVLRFG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1107]
'gi|53749452|gb|AAU90307.1| RNA-directed RNA polymerase [Solanum tuberosum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGKTIQVYGFPDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPAEVVKS-FLEKHTG-YGTVCALDVKQSK---GGSRAF----------------------A-----------------------------KVQFV-DNISADKIINLA-S--KRL-YF----------------------------------------GSSYLKA------------------------------------WEMKTDIV-----QV-----------------AYVDHMDGITLNFGCQISD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKFA--------VLG----S-TEVSIKFGIGLKKIYFFLSRG--------S-------------ADYKLQLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YENIWQVVLHRPYG---------QNAQ----FLLIQLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQWVRTTD----------FA----------P-SWIGLSSSLCLQFRRG--------VHLPNFQESFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFISQKSALVPNVQPP-EGIAIPYKILFKISSLVQHGCIPG-PSL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELL-PK---AST-GN--GI-RTNIYERILSTLRKGFVI-------GDKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSTET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLSLR-KSMSKY-----ESD----------------------------NNK-LDVLGW-----------SKYQPCFLNRQLITLLSTLGVKDDI---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVNV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDPDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIISNAHVV-FA---DR-----------EPDMAMSDPCKKLAELCSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDKPPD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----STAIFTRDVARRS--YDADLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMEYYGIK-----------------------------------------------------------------TEAEILSGGIMK---TSKTFDR-------RKD--AEAISIAVRALRKEAR----------------------------------------------------------------TWFKR---RN------------------D---IDD--------------------------------MLPKASAWYHVTYHPTYWGCYNQ--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKEKARN--RPVLNLSYLRAQLSRKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1114]
'gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGKTLQVSGFPST----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNADHVKD-LLEQIVG-TGNVFAVKLRPPKNISANSRSF----------------------A-----------------------------IVQFQ-SEAHASLVLNAAQR--NAL-RS----------------------------------------GSHYLKA------------------------------------RYAERDIV----PRPR----------------TTIFNLQGAKLHFGCLLKE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVLS--------VLW----SGTDVSVEFGFAMKRIDFCLIYN--------S-------------KKYKLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YESIWEIQLHRPPG---------LQKK----FLLIQVQAAPKIYEQNIRLSGSMYDDPLFN-------------------------------------------YFRDDTDDQWTRTTD----------FT----------PSASIGQSYILSLELPHI--------CYLPNIREYFVYYEVHN------------------------------------------------------------------------------------DIFNLQPGYSY--SSNTCFVPVVKSH-YFTDVPYEILFKINHLVQNGTLSG-PTL----------------------------------DDNFYRLVSPG-----YE---RIDRIKRALEKMSYL-----KK---------TCLNPTNWLSEQY---------KKMRRS-R-VLTSPNIT-LDD----------DGLVYVYRVQITPAKVYFY----GPEINVSNRVVRNYA-ADLDNFLRISFVDEDC------------------------------------------EKLRSTDLS-QR---SAP-GN--NTRRTALYNRVLSVLSNGITI-------GDKHFDFL-AFSS-----------------SQLRDNSAWMFA--SRP-------------------------------------------------------G--LSASDIREWMG---NFRN----IR--NVAKYAARLGQ-----SFSSSTET---------------LKV-HKYEV-KE---APDV---TN--------------GTE---YVFSDGIGTISADFADEVSKKCN-------------------LT------------------R----FTPSAFQIRY----GGYKGVVAIDPT-------------------------SQ------------WKLSLR-KSMSKF-----QSD----------------------------NIT-LDVLAY-----------SKYQPCFLNRQLITLLSTLGVIDSI---------FELKQQEAVQQL--------NRMVAEPQAAIDAIELMPM-G--E---I--------------------TNIVKELLLCGYRPD--VEPYVSMLLQTFRASKL-LELKTRSRIFVPK--GRAMMGCLDETR--TLKYG---------------------QVFIQAS------------------------------------NSADDRGKSVVTGK-VIVAKNPCIHPGDIRILQAVHS-----------------PL------------L--GH-----MVNCVVFPQLGP----RPHPNECSGSDLDGDIYFVSWDPDL--IPT---RMVAPMDYTP---APTE---------------TLDHDV------------------------MIEEVHEYFTN--YIVNE---------------------------------------------------------------------------------SLGIIANAHVV-FA---DR-----------QSLKAESTQCIKLAELFSIAVDYPKTGVP---------AQIPHE--------------LHVKEY-PDFMEK-LD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAT---YVSE------------------------------GVIGKLYREIKK--QNP---H-------IRHFTKDVATLS--YDTDLIV---------------------------------------------------------DGY----------QDYITEAVW-FKEE------YDFKLGNLMEHYGIN-----------------------------------------------------------------SEAEIISGCILK---MAKNFTK-------KSD--ADAIRLAVKSLRKEAR----------------------------------------------------------------SWFSE---MG------------------S---DESG--------------------------DGHKALVAKASAWYHVTYHPQYWGCYNE--G-----YDH------------RPHLI--SFPWCV---Y---------------------------------------------DKL-----------------------------------------------------------------------------------------------ILIKQKKNIA--RKMLDLQN---RMRRNTILG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1115]
'gi|47824981|gb|AAT38754.1| RNA-directed RNA polymerase [Solanum demissum]'                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EHLSVFQIYNLG-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLFGAPRIYKR--------LENSCYS-------------------------------------------FFKETPDDQWVRTTD----------FA----------P-SWIGLSSSLCLQFRRG--------VHLPNFQESFFHYAERE------------------------------------------------------------------------------------NNITLQTGFTFFISQKSALVPNVQPP-EGIAIPYKILFKISSLVQHGCIPG-PSL----------------------------------NVYFFRLVDPQ-----RR---NVACIEQALEKLYYL-----KE---------CCYDPVRWLTEQY---------DGYLKG-RQPPKSPSIT-L-D----------DGLVYVRRVLVTPCKVYFC----GPEVNVSNRVLRNYS-EDIDNFLRVSFVDEEW------------------------------------------EKLYSTELL-PK---AST-GN--GI-RTNIYERILSTLRKGFVI-------GDKKFEFL-AFSS-----------------SQLRDNSVWMFA--SRP-------------------------------------------------------G--LTANDIRTWMG---DFSQ----IK--NVAKYAARLGQ-----SFGSSKET---------------LSV-LRHEI-EV---IPDV--KVH--------------GTS---YVFSDGIGKISADFARRVASKCG-------------------L-------------------Q----YTPSAFQIRY----GGYKGVVAVDPY-------------------------SS------------MKLTLR-KSMSKY-----ESD----------------------------NNK-LDVLGW-----------SKYQPCFLNRQLITLLSTLGVRDDI---------LEQKQKEAVDQL--------DAILHDSLKAQEALELMSP-G--E---N--------------------TNILKAMLNCGYMPD--AEPFLSMMLQTFRASKL-LDLRTKSRIFIPN--GRAMMGCLDESR--TLEYG---------------------QVFVQFTGAGH--------------RE-------FSEDLHPFNNSRSTNCNFILKGN-VVVAKNPCLHPGDIRVLRAVDV-----------------PA------------L--HH-----MVDCVVFPQKGK----RPHPNECSGSDLDGDIYFVCWDQDM--IPP---RQVQPMEYPP---APSI---------------QLDHDV------------------------TIEEVEEYFTN--YIVND---------------------------------------------------------------------------------SLGIISNAHVV-FA---DR-----------EPDMAMSDPCKKLAELCSIAVDFPKTGVP---------AEIPSQ--------------LRPKEY-PDFMDKPPD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTT---YISE------------------------------RVIGKLFRKVKD--KAP---QAS----STAIFTRDVARRS--YDADLEV---------------------------------------------------------DGF----------EDYIDEAFD-YKTE------YDNKLGNLMDYYGIK-----------------------------------------------------------------TEAEILSGGIMK---TSKTFDR-------RKD--AEAISIAVRALRKEAR----------------------------------------------------------------TWFKR---RN------------------D---IDD--------------------------------MLPKASAWYHVTYHPTYWGCYNQ--G-----LK-------------RDHFI--SFPWCV---Y---------------------------------------------DQL-----------------------------------------------------------------------------------------------IQIKKEKARN--RPVLNLSYLRAQLSRKLVLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [963]
lcl|Ppa_RDR6SDE1SGS2_4_1_unnamed_protein_product                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FEELDAVKIVAVRG---------ASTR----ALLLQLRTPPYLYVQ--------RASKCRSRETILDMIIGTP-------------------------SLDPHYVHTEEEEGLWVRTVD----------YT----------PKRSIGQCLSYLLKISNT--------KTGDDMNDLFKKLAEFHLA----------------------------------------------------------------------------AYPPVIQQISLQKGAPFASSQ--VLVPIVDAP-PEKKVNFELMFQVNQLLQTSKLIG-ETL----------------------------------DSRFYHLLQPD-----VT---PHEQAKLVLERLGKR-----VG---------PCWDPVKEIQEEL---------GNMKET-LSSPRSVSIK-L-A----------SGMTWVRRVLVTPTKVYCT----GPEVDTSNRVTRQFA-SHSDRFMRMSFVDENL------------------------------------------EPLSSVALSVPRRGGAQD-GV--DAERSLLYNRVLKTLKEGIVI-------GDHKFEFL-AFSS-----------------SQLREHSVWMFA--SYA-------------------------------------------------------Q--LTATMIRAWMG---DFLT----IR--NVAKCAARMGQ-----CFSSSKPT---------------LEV-PEQEV-EQ---IPDIEREDE------------FGMSK---YCFSDGIGKISKEFAKEVAKRLQ-------------------M-------------------E----VVPSAFQIRY----GGYKGVVAVDPH-------------------------SD------------FKISLR-PSMRKF-----ASK----------------------------HVG-LDILAS-----------SRFLPSYLNRQIILLLSTLGIEDSV---------FEQMQHRMVSEL--------NDMLKDGDVARDMLQ--------------------------------------------------------MLLEAFRASQL-VDLRKRSRILEPK--GRVLMGCLDETK--SLSYG---------------------EIFLQVTPALG--------------RRKGLRDGLETFDSYPIGSAANQNIAYVVTGW-VIVAKNPCLHPGDIRKLKAVDG-----------------PG------------L--RH-----MVDCLVFPQKGH----RPHPNECSGSDLDGDLYFVSWDEDL--IPL---NTDEPMDYTS---PGAM---------------TLDH----------------------------HEIQEFFVK--YMVTD---------------------------------------------------------------------------------SLGVISNAHVV-NA---DI-----------EPAMARSTACQELAKLVSLAVDFPKTGVP---------AIIPQN--------------LRPTKY-PDFMEK-GD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KET---YKSE------------------------------RVLGKLFRQVKD--ASL---EKL----PCEIPREDI-ERA--FDPVMVI---------------------------------------------------------TGY----------EEFIDMAKF-HKNE------YDRKLIGLMNQYGIE-----------------------------------------------------------------TEAEAVSGYMLN---LARQYVK-------RREDVVERIRDAVRSLINEAR----------------------------------------------------------------QRFDE---NA------------------DDMVDDD--------------------------------IYAKASAWYHVTYHPEHIKVSAT--G-----R?--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [940]
'gi|50924896|ref|XP 472792.1| OSJNBb0048E02.13 [Oryza sativa (japonica cultivar-group)] >gi|32492169|emb|CAE04828.1| OSJNBb0048E'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPTAAAAATASLRVSNIPPS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVAAELLA-FFDSAVAVAGGAFACEIAAAH-RGWLSRGH----------------------G-----------------------------TVQFG-SAAAAAAAAGLASS--GRLPRF----------------------------------------LGALLSV------------------------------------SPSPVDLL----PRAS----------------DLSLRAAGAGLVVGDRVAE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVFE--------AAD----AWDGVRAEVIPGKRRVDLYLEHD--------S-------------QRYKLEVL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FEDMKDCLGCTLDG---------------MGAILLQLNYAPRIHTA-----------------ISGPAVNSRF-------------------------MDDRFHACKEDAKFSWVRALD----------FT----------PNYSFGRCSTLVLKLGKS--------ALVSDILKSLPFSGN-L------------------------------------------------------------------------------------GELTMNSMDGVGASS--NVVPLVHCP-RDYSVPYEVLFRLNSLMHMGKIVA-KHV----------------------------------NADLFKALQE-------L---PVDVSRRIFEKMHKL-----ES---------TCYGPLQFIQQEA---------YSMKRSHNVLLSNEGEG-EGE----------RKLMKCYRVNITPSKIFCF----GPEEEVTNYVVKHHS-AYASDFVRVTFVDEDW------------------------------------------SKLSSNAIS----ARIEQ-GFFSKPFKTGLYYRILSILKKGFSI-------GPKNFEFL-AFSA-----------------SQLRGNSVWMFA--SNA-------------------------------------------------------S--LNAGGIRRWMG---HFEN----IR--SVSKCAARMGQ-----LFSSSRQT---------------FEV-LRWDV-EV---IPDIEITTD--------------GSK---YIFSDGIGKISLRFAKRVAHHVG-------------------LD-----------------PT----NLPSAFQIRY----GGYKGVIAIDPM-------------------------SS------------IDLSLR-PSMKKF-----ESE----------------------------SRM-LNITSW-----------SKSQPCYVNREIISLLSTLGIRDEI---------FVAMQQDEMRET--------EEMLTNKEVALSVLGKLGG-S--E---T--------------------KT-AVKMLLQGYEPS--SEPYLSMILKAHQENRL-TDIRTRCKIHVPK--GRVLIGCLDETG--VLEYG---------------------QVYIRITKNSK--------------EQ-------KDSNQSYFYND--DGKTATVVGK-VAITKNPCLHPGDIRVLEAIYD-----------------PD------------L--VG-----MVDCLVFPQRGE----RPHPNECSGGDLDGDLYFITWDDKL--IPE---KVDTPMDYTA---TRPR---------------IMDHVV------------------------TLEEIQKHFVD--YMIND---------------------------------------------------------------------------------SLGAISTAHLI-HA---DR-----------SPLKARSPECLQLATLHSMAVDFAKTGAP---------AEMPRT--------------LRPREY-PDFMER-WE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPM---YISN------------------------------GVLGKLYRSAMG--HME---KSG----DSGALSSSSAQPSPTYDPDLEV---------------------------------------------------------PGS----------DEFLQAAEE-YYEL------YEEKLTTLMNYYRAE-----------------------------------------------------------------LEDEILTGNIRN---KMLYLKRDN----KRYFEMKDRIVAAVDALHREAR----------------------------------------------------------------GWLLS---SR------------------K---EED--------------------------------ASRMASAWYRVTYHPDRRRG--------------------------K-RFW--SFPWIA---C---------------------------------------------DNL-----------------------------------------------------------------------------------------------LAIKASSQLRRRRQKDDDSTAVVQMDCS---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1136]
'gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGVEKRVT-ATVRVSNIPQT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AIAKQLFD-FFESSIG-KGSVFACDIFSEH-KNWKSRGH----------------------G-----------------------------RVQFE-TSQSKLQSLSLSEQ--GKL-VF----------------------------------------KGHQLIL------------------------------------TSSFDDII----ARPI----------------ELNYRFQKGILHTGILLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DYME--------VLE----TWENVKTLIMPERKSLEFWVSHA-------KG-------------ECYRLEVQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGDIIETCECSLED---------EKT-----ALLLKLKHAPKLYQR-----------------VSGPGVASKF-------------------------SSDRYHVCEEDCEFLWVRTTD----------FS----------AMKSIGCSSSPCWEIEDG--------LLSSDLLSGLPYCNNDV------------------------------------------------------------------------------------MDLVLDEVGDIYSAS--ELVPLASFP-SDLKLPYEILFQLNSLIHTHKISL-GAV----------------------------------KTDLIEVLSK-------L---ELDTAMMILQKMHKL-----QS---------TCFEPVPFIKTRL---------HVLGKNSKNQPSSSYSR-LVN----------QNMMSVHRVLVTPSKVYCL----GPELETSNYIVKNFA-LHASDFLRVTFVEEDW------------------------------------------GKLSPNAIS----MSVEQ-GIFAKPYRTKIYHRILSILRDGLVI-------GSKRFLFL-AFSA-----------------SQLRSNSVWMFA--SNE-------------------------------------------------------H--VKAEDIREWMG---CFNK----IR--SVSKCAARMGQ-----LFSTSFQT---------------MEV-QSPHV-EI---LPDIEVTSD--------------GVS---YCFSDGIGKISQAFASQVAQKCG-------------------L-------------------S----YTPSAFQIRY----GGYKGVIAVDRN-------------------------SF------------RKLSLR-GSMLKF-----ESK----------------------------NRM-LNITKW-----------SDAMPCYLNREIVILLSTLGVEDKV---------FEDLLDNHLHLL--------GKMLTTNEAALDVLESIGG-G--D---V--------------------KKILMRMLHQGYAPN--LEPYLSMMLQSHFENQL-SDLRSRCRIFIHK--GRVLVGCLDETG--ILNYG---------------------QVYARITMTKA--------------EL-------QSAQQSFFQKV--DETTAVVRGN-VVVTKNPCLHPGDVRVLEAVYE-----------------VA------------LEEKA-----WVDCIIFPQKGE----RPHPNECSGGDLDGDLYFISWDENL--IPR---QTVTPMDYTG---RRTR---------------IMDHEV------------------------TLQEIQRFFVD--YMISD---------------------------------------------------------------------------------TLGAISTAHLV-HA---DR-----------EPDKALNPKCLQLATLHSMAVDFAKTGAA---------AEMPRF--------------LKPREF-PDFLER-WD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPM---YISE------------------------------GVLGKLYRAIVN--SSV---RSN----SDDLGSVRAIQDA--YDHALLF---------------------------------------------------------DGY----------EAFIETAKN-HKET------YLDRMNSLLNYYGAE-----------------------------------------------------------------KEVEILTGNLRQ---KSVYLQRDN----RRYFELKDRILVSAKSLQKEVK----------------------------------------------------------------GWFTG---CC------------------K---EDE--------------------------------HKKLASAWYHVTYHPSYCEG--------------------------SANCL--GFPWVV---G---------------------------------------------DIL-----------------------------------------------------------------------------------------------LDIKLHNT--RK----------I----T---S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1120]
'gi|15237051|ref|NP 192851.1| RDR2 (RNA-DEPENDENT RNA POLYMERASE 2); RNA-directed RNA polymerase [Arabidopsis thaliana] >gi|7267'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVSETTTNRSTVKISNVPQT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVADELLR-FLELHLG-EDTVFALEIPTTR-DNWKPRDF----------------------A-----------------------------RVQFT-TLEVKSRAQLLSSQ--SKL-LF----------------------------------------KTHNLRL------------------------------------SEAYDDII----PRPV----------------DPRKRLDDIVLTVG-FPES---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DEKRF------CALE----KWDGVRCWILTEKRRVEFWVWES--------G-------------DCYKIEVR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FEDIIETLSCCVNG---------DASE--IDAFLLKLKYGPKVFKR-----------------VT-VHIATKF-------------------------KSDRYRFCKEDFDFMWIRTTD----------FS----------GSKSIGTSTCFCLEVHNG--------STMLDIFSGLPYYREDT------------------------------------------------------------------------------------LSLTYVDGKTFASAA--QIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAAS----------------------------------DMELIKILRG-------M---SLETALVILKKLHQQ-----SS---------ICYDPVFFVKTQM---------QSVVKKMKHSPASAYKR-LTE----------QNIMSCQRAYVTPSKIYLL----GPELETANYVVKNFA-EHVSDFMRVTFVEEDW------------------------------------------SKLPANALS----VNSKE-GYFVKPSRTNIYNRVLSILGEGITV-------GPKRFEFL-AFSA-----------------SQLRGNSVWMFA--SNE-------------------------------------------------------K--VKAEDIREWMG---CFRK----IR--SISKCAARMGQ-----LFSASRQT---------------LIV-RAQDV-EQ---IPDIEVTTD--------------GAD---YCFSDGIGKISLAFAKQVAQKCG-------------------L-------------------S----HVPSAFQIRY----GGYKGVIAVDRS-------------------------SF------------RKLSLR-DSMLKF-----DSN----------------------------NRM-LNVTRW-----------TESMPCFLNREIICLLSTLGIEDAM---------FEAMQAVHLSML--------GNMLEDRDAALNVLQKLSG-E--N---S--------------------KNLLVKMLLQGYAPS--SEPYLSMMLRVHHESQL-SELKSRCRILVPK--GRILIGCMDEMG--ILEYG---------------------QVYVRVTLTKA--------------EL-------KSRDQSYFRKI--DEETSVVIGK-VVVTKNPCLHPGDIRVLDAIYE-----------------VH------------FEEKG-----YLDCIIFPQKGE----RPHPNECSGGDLDGDQFFVSWDEKI--IPS---EMDPPMDYAG---SRPR---------------LMDHDV------------------------TLEEIHKFFVD--YMISD---------------------------------------------------------------------------------TLGVISTAHLV-HA---DR-----------DPEKARSQKCLELANLHSRAVDFAKTGAP---------AEMPYA--------------LKPREF-PDFLER-FE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPT---YISE------------------------------SVFGKLYRA-VK--SSL---AQR----KPEAESEDTV--A--YDVTLEE---------------------------------------------------------AGF----------ESFIETAKA-HRDM------YGEKLTSLMIYYGAA-----------------------------------------------------------------NEEEILTGILKT---KEMYLARDN----RRYGDMKDRITLSVKDLHKEAM----------------------------------------------------------------GWFEK---SC------------------E--DEQQ--------------------------------KKKLASAWYYVTYNPNHRDE--------------------------KLTFL--SFPWIV---G---------------------------------------------DVL-----------------------------------------------------------------------------------------------LDIKAENA--QRQSVEEKTSGLV----S---I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1133]
'gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila SB210]'                             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSESLQQQLDKEININQTLNFFQTQLLFILLINKCYINGKITSKNFTTSLCFASIQKYLQEQQHRFKSIKCVSIYTPKKEQQQIGLDTIDDVKEKIKEIQKSIDHNYLNIPQH---------------------------------------------------------------------------------------------------------------------------------------------------------------------LKEERYREGQQSLDNDDDSNLLGSEYQFLKNFITKENDDIHLKEEMASFNKIESFCQN----------------------------------------------------------------VLKNS-KNESKINTVNQQKDQYARINSWIIILSGTEQDLEVLNDSKIDVKTKHEKYYFFLKTKHNDNEKKNYLKI----------------------------------------CTDELSNYAKEQ----------------MNFVNIKLLQVSLGIFELY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGALYYNCQFQFEENIDYVNTISIYMQNDESEQSVSIVLAYN-------D--------------YQLKIEFP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YLYCNEIRFDQRGK---------N-------MYYFQLVVPPKYFVR--------------------------E-------------------------NSANIQENLDQKKNTWIRVDNFFAHDISNEL------------KRIEFVNNTVICIEIENE---------TVNTFQTIL-------------------KNS----------------------------------------------FSNVFKDTDPIPISNVSQHFPQEPENDLDQQWER----------------LLNRYSFNLSYSILTLISHNKLSV-VKL-----------------------------------REFLDYIDLQI---------RDGKSEYILEKGIQY---YYNQKKEINRLNFTAFQILFQDVQRQ----------------ENYFKIQEIRAKRD----------VKVIATRRVSITPSGLIYN----LKELELSNRVLRIFQ-DSTDSFIRGTFQDDSL------------------------------------------ENA----------------------KHMKYVSRYFRQKLKSFKV-------LNWEFINF-GWSA-----------------SQLRNSSSWFFH--ETE---------------------------------------------------------VLKKQDVITRIG---DFSG----IN--PPAKKSARIGQ-----CFSSSTPY---------------ILK-ERPNI-EF---IDDITTPSAVQEVDANGNICYFRQKK---KVFTDGIGTISQDLIRKISDHLN-------------------A------------------------FFMCAIQVRY----GGAKGVLTIDYK-------------------------SD----------KKNTIQLR-ESMIKY-KITDEQD----------------------------ELI-IDILDR-----------NKYRFGYLNRQVIILLRSLGIENEQ---------FIQAQQEYIEEL--------NKSALKDASIFTLFNTDYSKDGTRLFPI--------------------THLLRSMQTSRIDMA--QDIFCKGVIHTLKKRGF-YILRKKSNIFLKK--SARLMGVIDEYN--VLEQD---------------------EVFAYISQDSE--------------KS-----------------------FFQVEGD-VIVVKNPCLHPGDIRKLKAVTL-----------------ETISQRLGEGKINPF--KK-----LRNILIFPQKGK----EPITSQIAGSDLDGDCYFICWDQRF--IPL---EQKEPFNYDEDDNSQKK---------------QISQEQYDIEISKKPNTQFKTKNPVREVIDDNEQMLDFFID--FINNE---------------------------------------------------------------------------------NLGKIDNSHLV-FA---DK-----------SPLYAEDPKCLKLASLHAQAVDYAKTGIS---------PQLPKN--------------LAIKEY-PDFMEK-DD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPS---YQSQ------------------------------SILGILYRQVKDQYE-----KHC----KNDIEGDRSQTF---IDNNLIFNP------------------------------PTFV---------------------NEIVDEQENKTYLEQEIDFAIE-ANNQ------WNIEINNLKQFFGAQ-----------------------------------------------------------------NEFEIYTGNFSK---LIKVERKKK----MSAEIVQQRILSTLLAIKNRFE----------------------------------------------------------------LLFFK--------------NLDEDRDRFYDETNRKK--------------------------YYSKKCKIRATLWYIICYLRKPEHIVQY--AVNFE----------------KDSLLGQTFTFLSQQKYFGE------------TIIRGNRNPKTIQFFNENNDYVGLSWFIISNVL-----------------------------------------------------------------------------------------------LEIKKDNDNYKMNEQKQQKSEQQIKEFEDYKKKFYQNDLNGYHSDEYL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1439]
'gi|14530419|emb|CAC42290.1| Hypothetical protein F26A3.8 [Caenorhabditis elegans] >gi|17508703|ref|NP 492131.1| RNA-dependent R'    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRKYEIEIKSRQETQIVEEQDCDCFFEINFEVESEQFDHTIIDAMHDYLSDLN--VYVPYQRPNIVLHGSDFWLRTLDCHT-EIPLAAIYFGNIQGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYFNHWQVSFSRE--------------NISSRDMLHKIHAEFEFDKTDMITVQFQC-----FEEKKQKFEDSRKQKVRVNYQLTIR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDSIRRIIVDPRVE-------------GCNTCVHFEVNCPPLIRKG-------------------------------------------------------------YIDNDKSSFHKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKE--------ISTKEMYRVLSRLRSRTKVLIEFANLPSIDVP----------------------------------------------MGSHYPYNRWNLKK----SPTDSNAPIFREFLKEIFPPKYEIV-DDKLIDVNEERKFSITYLIECLLSRGAIVKDQLL-----------------------------LNEQHWKNFLEIIIWYYRN-------DNQLCEAALEDLVHL-----IDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESI----------------------------EGYQRVRKVIFTPTRVIYI----APETIMGNRVLRKFD-KDGTRVLRVTFRDDNN------------------------------------------KKMRSNVTG------------------KLLDRTANKYLEHGVRI-------ANREYGFL-GCSN-----------------SQMRDNGAYFMMRFTDKQLDRFYKCNPTASNI----------------------------------------NFKPKIDEVRFQLG---RFSE----IE--NVPKLMARLGQ-----CFTQSRLT--------------GVGL-GRDDY-CS---TYDLTGGRATN------------GSE---YTFSDGVGMMSYQFAQEVSQAMQ-------------------FGK----------------------AVPSCFQIRF----RGNKGVIAIEPFLDEIRKWAL----------------VNGVTSM-----KMAKCLFR-PSQIKF-----QAK-------------------------AISGDQ-IEMVKF-----------SSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILSF--------AKQMNEETFCRNKLKEFPRR----------------------------IDIDNLRTMWGFTLS--SEPFFRSLIKASIKFSI-TKQLCKEQIQIPSELGRSMLGVVDETG--RLQYG---------------------QIFVQYTKNYK-----------------------KKLPPRDS--NNKVHGSEIVTGT-VLLTKNPCIVPGDVRIFEAVDI-----------------PE------------L--HH-----MCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSVIWDQEL--LLE---RNEEPFDFAV---EKIKV--------------PYDREK------------------------LDVLMREFYVT--YLKLD---------------------------------------------------------------------------------SVGQISNSHLH-NS---DQ-------------YGLNSRVCMDLAKKNCQAVDFTKSGQP---------PDPLETKWRADPVTFEVIPPENPERI-PDFHMGNER--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPM---YVSP------------------------------RLCGKLFREFQAIDNVI----------KISEERDEQYNIE--LDETIFV---------------------------------------------------------TGF----------ERYMESAQK-QLSS------YNGQLRSIMENYGIR-----------------------------------------------------------------SEGEIMSGCIVE---MRNRISDKDQDD-MSFYNTNQMIETKMTSLVCKFR----------------------------------------------------------------ETFFE---EFGGFTVKCTL-LPNAYDNGNCLNYRCE--------------------------DPDQEVRKKAVAWYRACYECAQSTR--------------------------EVRKL--SFAWIAY------------------------------------------------DVI-----------------------------------------------------------------------------------------------AKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDHLIT-GEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFATRQLASADGNAEPFFKIIEKEEYEKQKRDSSRGNIDPLTEKKRSDM--------MVKFFQFMGCRKFRKMSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEELPVSSDPTITAETMDRECEPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDKAKPKTTVRYIVSVSGTLESIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGEF------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1601]
'gi|14030853|emb|CAC35915.1| Hypothetical protein M01G12.12 [Caenorhabditis elegans] >gi|13655331|emb|CAC35914.1| Hypothetical p'    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSGQNGSIRLEFPEFDDSIDRIEYGIEMMLNSVPAI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQHHKIDIKSRHEMEIVEEQDCDSFFEVNYDVASAKFDQTIIDAMRAYLFSLNAN----WPRPYIVLHGSDFWAKTLDCYI-EVPLAAMYFGNIQGY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYISHWQISFSGK------------KISADANELLNKIVAEFEFDRADMITVTFQC-----------------LKRKRINYQTIIR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KDTIRRIIVDPQVD-------------MNKTRIHFELNCPPLIRQG-------------------------------------------------------------SVDDDKPSTQKPFYKRTNRYSCIG---TKEYGSPHESAISDSPFFTIELQKQ-ESDGNSGDSNDTLYRVLSRLRSRTGVQIEFANFPKVDVP----------------------------------------------IGKVYPYLRY---------PTSSKSYAFECFIYNCFPSKMKII-DAQSINENDGRQFAITYLIECLLSRGAIVKDQVL-----------------------------TDEICWGQFLGLITHYYLE-------NDKLCEAALEDLIYL-----IDGRKRIGSIWKCFHKICQKRLVMQLTNGMSEQEIE----------------------------EGYQRVRKVIFTPTRVIYT----PPEMIMGNRVLRNFD-RDGTHVLRVTFRDDNN------------------------------------------RKMRANATG------------------ELLDICVKKYLEHGIVV-------ANRDFGFL-GCSS-----------------SQMRDNGAYFMVKNTDNRHKNACKMNS---------------------------------------------KFKPNIDSVRNQLG---NFLQ----IE--NIPKLMARLGQ-----CFTQSRLT--------------GVSL-GPDNY-CL---THDLSGGRSSN------------GSE---YTFSDGVGMMSYEFAQEVSRLMS-------------------FGR----------------------SVPSCFQFRY----RGMKGVLAIDPLLDKERNWQE----------------KHGISLS-----KNIKCVFR-PSQIKF-----EGK-------------------------QILGDQ-VEMVKY-----------SSPVLVALNKPLINILDQVSEMQSLECHRRITSRIEELMDLQTLSF--------AKQMTDEACFRNKLKEFPRR----------------------------IDIDYLRTIWGFTLS--NEPFFRSLVKASIKFAI-TKQLFKEQIQIPSELGRSMLGVVDETG--ILQYG---------------------QVFVQYTKNHR-----------------------NILPPRDS--NRKVLGSEIVTGT-VLLTKNPGIVPGDVRIFEAVDI-----------------PE------------L--HH-----LCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSVIWDQKL--LLE---RNEEAFDFAV---EKNLQ--------------TYEWED------------------------IDDLMRDVYVE--YLKKD---------------------------------------------------------------------------------LVGLIANSHLH-NS---DQ-------------YGLTSRVCMNLAKKSCQAVDFSKSGKP---------PDELQTTWKTDDATGEMIPPERAERV-PDYHVGSDH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPK---YVSP------------------------------RLCGKLFREFQGIDNAM----------KISEEKSEQYKIE--VDESIRV---------------------------------------------------------DGF----------EEYMEDAKK-QLAS------YNGQLKSTMDTYGIQ-----------------------------------------------------------------SEGEIMSGCIIE---MRNRISDSDQDD-MSFYNTNRMIETKMTALVSKFR----------------------------------------------------------------TIFFQ---QFGGFQEVCTL-LPDAYNESNFFNFRCE--------------------------NPNEEIRKKAVAWYRACYECAKSTR--------------------------EPRKL--SFAWIAY------------------------------------------------DVI-----------------------------------------------------------------------------------------------AKIKETKVLENVEMNIGGANPMYTYLEHHRARYINDHVDDFEKFRRNLDNLITGKESKKAVFILQRYIYMIPGLDSVMFVLMRWGEALELFEGRSMSIYHFLLMFIMFSTGQLASADGNAEQFFGKLDVEEYRRRKKNGTLEPDIPLTRHQRSDM--------MFKFFQLMGSRKFRTMRSISFRPLGFSSVFMSGEWMVFHEPALKTYYNIMFNLRFEELPISTDPTTTHETRLRECEPFVIELPEKANMDMLIKKLTEKSKVSQLNLRRQDKN----KKTSNSTVRYIVSASGTFESTQQLRKLVTVTSPIKNHWEGQDLAQQMANFCYLKIMKDDL------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1579]
'gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var. neoformans B-3501A]'                         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSTKYGIHAYPPKFSDPQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIKRL-MADYGQRSMPRPGKGPERTETS--------------------------------------------------------------------------------------------------D----------------VDRFQFWPDAIAMGSLKGR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QFTQVFGAA--CIKGYDERSHGRSILAFDLKREVLVIKAEMK-------L-----DPKILPPALNPLYAELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FDDINHQGIHITKRPLPD---GLTQKDALEVTVTVSCRRPPKFFAPFDPGDKAPDYMAGTKYLIDRR------------------------------------------------RATALDFAVSGVNERDANAIPAIPEGPCAYPTFWNTYRWVFRMG-------TRQYDKLLACAHKIRALAQADPEMDLMSLTSER----------------------------------------------ARWTVRVLTGEDFKRVYAPP------------------------------DLSAIPFSTRTLLEGLIGHGIMAPGDTA------------------------------------ELIAMLRKVSS--------STAFHDRILEALFSQ---------------QKIRDIKHLIPKLA-----------------------------AFLRRRPPYIQPHLVLIRTVLVTPTRLLIG----PPQYEPSNSVTRRYH-DKLDGIIRVQFTDEED------------------------------------------RLFIADNMK----------LIDSINPAVGIMARVRRALQFGLII-------GGETFYPV-ASSA-----------------SQQKEHAMWFIN------------------------------------------------------------NKVIDGLELRNWMG---TVHE----T---VVAKHAARMGL-----PFSTSRIV------------------NMKINIGEE---LPDIE------------------RNG---RCFTDGCGIAGREVLNQAALALN-------------------EK-----------------VG--INSQPSAIQFRL----GGAKGVLSDWSQ-------------------------LV----------NEYEIRLR-PSMIKF-----KSD----------------------------LAD-LNVIRI-----------AKYQAAFLNRQFINIMCANGVPHEL---------IIGIFEDAIADIKGFKDRVWNNAVTENDQQLIALC------------N--------------------DFPLAQLIKSGFN----ENPLLLDVAAIIECRAL-QDLKWRARVKLLD--GVYLIGIADETG--TLKEG---------------------EVFCQFQENDE--------------SP-----------------------PKIVVNE-VLVCRAPALHPGDVRRAWAVDN-----------------PE------------L--RH-----LKNVIVFSTQGM----RDMPSMLGGGDLDGDDYTLIWDQRF--VQS-L-KVYDPMDYEA---PDPI---------------SV-KHV------------------------TQKHLNENFVQ--YILND---------------------------------------------------------------------------------VLGQVDNCHLA-LS---DM-------------YTPFDPRCLHLSEIHSTAVDFAKTGQA---------AALDPS--------------LRPKEW-PDFMDKDDV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVV---YEST------------------------------GILGKIFRIVQADAHFS---------------PSDLEQMGYPTDPRITR------------------------------------------------------------------FPLHESLLDRLKP-LKAS------YERDLQYDMRRYRV------------------------------------------------------------------YEPEIPSGIAIR---NKRRKRV-------RDQNLNEPLREAYNLLVNNVR----------------------------------------------------------------ETAQK-----------------------IVNDFEFK--------------------------TTLTPMQVVARHCYALTYEEVHVRQWEQ--ALAEGKFGEKPEDDEDSERLRPKPLI--SFAWCFC------------------------------------------------QEL-----------------------------------------------------------------------------------------------VQIVSQSASTPVIPVAVAHSE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1123]
'gi|39581073|emb|CAE57375.1| Hypothetical protein CBG00321 [Caenorhabditis briggsae]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGDEGYRGWIKLEIPCFEPER-HMNNIIRCHTTKLEPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNSYNMRIHTKGQVQAVEEQDCEPFYESNYEIVSSHFSHHLIIAIQNYLKSLSMDRLMPFQLGNLVLHSSDFWSSELTCHLADIPLSAFFFGNIQGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFINHWEVSFWEDTHRRNRLRQKNMQPTASDRQGLNQIRVEFEFDKVDFMTVHFKH--KEGDFEVISKDFRKTRETVTMYYQITVR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTSIRRVIVDPVVN---------DTNGGDRIRIHFELNCPVLIRRA-------------------------------------------------------------YKTEKQEAEAKHQVPHYRRFLVINRGRSANM-YPTPKAITDSPVFTIEFDTS--------VSLEEVYRLISRLRIRTGVSIEFATIPSVDCL----------------------------------------------IWRENPYHRWTFHGSSHLSPTHFSAPIYRDFITTAFPRKHEVC-GSREVDTNRERKFAITYLLECLISRGAVVKDQIL-----------------------------LDDTIWHRFLEVILHYYTK-------DDKLCEAGLEDLVHM-----IDGRKRIGSLIKCFDRICQTRQKNSLVNGLTTEEMR----------------------------EGYQRVRKIIFTPTRVIYV----APETLMGNRVLRRYD-HDGTRVLRITFRDDDN------------------------------------------QKMRTNKTS------------------TLLEKTVNTYLMNGITV-------AGRNFGYL-GSSN-----------------SQMRDNGAYFMEKYSSSQCREYEKMCRMAPPI----------------------------------------TFNPKIQAARKNLG---RFET----ID--NIPKMMARLGQ-----CFTQSRLS--------------GVNL-DRCTY-VT---MYDLTGGKNIK------------GDE---YTFSDGVGMMSMNFAQMVSQVMD-------------------FGK----------------------GVPSCFQFRF----RGMKGVIAVEPFLDDLRQWSI----------------ENDIQEVSEDTAWGLNCVFR-PSQIKF-----ISK-------------------------RHPRDQ-VEIVKY-----------SSPVPVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSF--------AQQMIDETFCRNRLKELPRR----------------------------IDIDYLRTTWGFTLS--SEPFFRSLIKASIKFSI-TKQLRKEQIPIPADLGRSMLGVVDETG--RLQYG---------------------QIFVQYTRNLA-----------------------LKLPPKSA-------SRSVLTGT-VLLTKNPCIVAGDVRIFEAVDI-----------------PE------------L--HH-----MCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSIIWDQQL--LLD---RNEDPFDFTS---EKQKS--------------SFKEEE------------------------IDDLMREFYVK--YLKLD---------------------------------------------------------------------------------SVGTISNSHLH-NS---DQ-------------YGLNARVCMDLAKKNCQAVDFTKSGQP---------PEELERKWRKDEVTGEMIPPERAERV-PDYHMGNDH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPM---YVSP------------------------------RLCGKLFREFKAIDDVL----------KISEERDEQVEIT--IDETIMV---------------------------------------------------------DGY----------KEYMHSARE-DLAR------YNAQLRSMMENYGIK-----------------------------------------------------------------TEGEVFSGCIVD---MRNRISDKDQDD-MSFYNTNQMIETKVTNLYKKYR----------------------------------------------------------------EHFFE---EFEGAWEANTEGTSRGESDTNILQRHCR--------------------------APTQNMMKKAVAWYRACYEEARVTR--------------------------ENKKL--SFAWLMY------------------------------------------------DVL-----------------------------------------------------------------------------------------------AMVKQTKSLTSDDIRMGGSNPLYTMLDAHRSQYLLDNRSVFEDYIRFAPSKNQGEQVARALEIIRMYVETNPGLEEVMFVINEWARASKLFENQPIRNYHLSLLFILFATRQFSSVDGNAAAFFPKIDERGWREEKANGEFKQGLEFMEMKKSQM--------IVKFLEFLASRKFRKLPNVSFRTLRFSSIFMRGEWQIFHVAALKTYYNLLFNLRFEELPVSTDPTMTVRSIIRENEPFVVELPADADRTLVHRKLIEHTGVEEIYMRNMEKSVRGVDEQQKANTRYLVSTRGTLESMYKLRQLVAVKVPIKTYVTGQEISTQMARLCYEKIVKGHIS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1631]
'gi|14530420|emb|CAB01701.2| Hypothetical protein F26A3.3 [Caenorhabditis elegans] >gi|17506499|ref|NP 492132.1| Enhancer of Glp'    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGDEGYRGWIKLEIPCSLPER-QMGPIVKCHVAKLEPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNEYNIKVLTKGQVQVVEEQDCEPFYETNYEVATSRFSHDLIAAIQTYLKDLSTDHLMPFQRGNLVLHSSDFWSSELTCHLVDIPLAAVFFGNIQGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFINHWEVSFWDDVRRRKSARTRNTEPTQADKIGMNQIKVEFEFDKIDFMTVHFKH--FENDFEVADKDAKRTKQTVTMYYQITVR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTSIRRIIVDPVVQ---------DCNGSDRIRVHFELNCPVLIRRA-------------------------------------------------------------YRTAKQESENRHSVPHYRRYLVINRGRSANQ-YPTAKAITDSPVFTIEFDQS--------VGLNEIYRLLSRLRIRTGVSIEFADIPSIDCL----------------------------------------------IWRENPYNRWTFLNNQHLSPTHFSAPIYRDFITTAFPKKHEVC-GSREVDTNRERKFAITYLLECLISRGAVVKDQIL-----------------------------LDEGIWHRFLEVILHYYTK-------DDKLCEAGLEDLVHM-----IDGRKRIGSLIKCFDRICQTRQRNSLVNGLTTEEMR----------------------------EGYQRVRKIIFTPTRVIYV----APETLMGNRVLRRYD-HDGTRVLRITFRDDDN------------------------------------------QKMRTNKTS------------------TMLEKTVNQYLKNGITV-------AGRNFGYL-GSSN-----------------SQMRDNGAYFMEKYSSSQCREYERIYQIKPPI----------------------------------------TFNPKIQAARKNLG---RFET----ID--NIPKMMARLGQ-----CFTQSRLS--------------GVNL-ERCTY-MT---TYDLTGGKNLK------------GDE---YTFSDGVGMMSYRFAQMVSEVMD-------------------FGK----------------------GVPSCFQFRF----RGMKGVISIEPLLDNLRQWSI----------------SYNISKPSDDSSWSLNCMFR-PSQIKF-----ISK-------------------------RHPRDQ-VEIVKY-----------SSPVPVALNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSF--------AQQMVDETFCRNRLKELPRR----------------------------VDIDYLRTTWGFTLS--SEPFFRSLIKASIKFSI-TRQLRKEQIPIPCDLGRSMLGVVDETG--RLQYG---------------------QIFVQYTKNLA-----------------------LKLPPKNA-------ARQVLTGT-VLLTKNPCIVAGDVRIFEAVDI-----------------PE------------L--HH-----MCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSIIWDQQL--LLD---KNEDPYDFTS---EKQKA--------------SFKEDE------------------------IDDLMREFYVK--YLKLD---------------------------------------------------------------------------------SVGQISNSHLH-NS---DQ-------------YGLNARVCMDLAKKNCQAVDFTKSGQP---------PDELERKWRKDEETGEMIPPERAERV-PDYHMGNDH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPM---YVSP------------------------------RLCGKLFREFKAIDDVL----------KISEERDEQVEIS--IDETIKI---------------------------------------------------------DGY----------TEYMASAKN-DLAR------YNAQLRSMMENYGIK-----------------------------------------------------------------TEGEVFSGCIVD---MRNRISDKDQDD-MSFFNTNQMIETKLTNLFKKYR----------------------------------------------------------------EIFFE---EFEGGWEGNTEAFSRYGRDSNILQRQCR--------------------------APTVQMMKKAVAWYRACYEEARITR--------------------------ENKKL--SFAWLAY------------------------------------------------DVI-----------------------------------------------------------------------------------------------AKVKQDKSLTSDEVKMGGANPLYTMLDDHRSQYLVDNSRKFEAFRQFSTPKTSGEQVKRAHRIIKMYTETYPGLDAVLFMLDEWARISNLFENQSLREYHLSLLFILFATRQFSSVDGNAAKFFNKVDEKSYKQSKTIGDFEPSLYIEEKGKSQM--------MVKFLEFLASRKFRKMANLSFCALDFSSIFMRGEWQIFHLAALKTYYNVLFNLRFEELPVSTDPTTTVRSIIRENEPFVIELPANCDRSLVHRKLVEHTGVKEIFMRNMEKSVRSSDDVQKINMRLLVSTRGTLESMYKLRQLVAVKVPIKTYVTGQDVSTQMARLCYEKIVRGHINI----------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1632]
'gi|39581291|emb|CAE72312.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]'                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HGFIKLEFPESTNSRKEMEIVIGKLLAGLPES----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQRYGIQIEREHPMQVVQEEDCDACFEVNYEVTCEEFKHNIINAMQRYMDGWR--HCVAYAKPTILLHSLDFWRTTLHLQVNDVPLSAIYFGNIQGN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AFINHYEVSFWKENEGKSIRR----------KTPMNNITVDFEFDKCDMICVNFQCVQIEEDRNANAGGDKRNQFNNSI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIRRIIVDTNVT---------DRYG-DRTRVHFELNCPPLIRKG-------------------------------------------------------------IINAD-HADNPYVKPFYQRWKVIKKEWDGHG-WPNEAAISDSPIFTVDFDPI--------VQNFELHRILSRLRVRTGVSIEFGMLPAISVP----------------------------------------------MCKRWPYHRWTIKDGKQLAAADTDAPIFRDFLADLFPKKFEVNDDDKLIDVNDERKFSITYLIECLISRGAVVKDQIL-----------------------------LDEQHWRSFLGIIWRYYKV-------DDKLCESALEDLIHL-----VDGRKRIGSIIKCFDKICQKRQRMQLINCLSESEIR----------------------------SGFQRVRKVIFTPTRVIYI----SPETIMGNRVLRKFD-KDGTRVIRITFRDDNN------------------------------------------NQMRANDTG------------------DLLEMTANKFLGEGIRI-------ANREFGFL-GCSN-----------------SQMRDNGAYFMAKYSQSQLEKFLRTRPNEAQLK---------------------------------------AFKPRIMEVRKHLG---KFDK----LE--NIPKLMARMGQ-----CFTQSRLT--------------GVEL-NRSDY-IR---IPDFEGGKNLA------------GKP---YTFSDGVGIMSYRFAQKVAHAMQ-------------------MGN----------------------SVPSSFQIRF----RGMKGMIAIDPYMDLIHQWNV----------------SYDI--PYQVPNLELKCAFR-PSQIKF-----EAK-------------------------SLPGDQ-IEMVKY-----------SAPVMVALNKPFINILDQVSEMQSLECHKRVTGRVEELMDRQILSF--------ARQMNDETYCRNRLKEFPRR----------------------------IDIDFLRPMWGFTLS--SEPFFRSLIKASIKFSI-TKQLRKEQIQIPKELGRSMLGVVDETG--QLQYG---------------------QIFVQYTQNAA-----------------------KKLPMRGP--NMTVPDAKIVTGT-VLVTKNPCIVTGDVRVFEAVDI-----------------PE------------L--HH-----MCDVVVFPQHGP----RPHPDEMAGSDLDGDEYSIIWDQQL--LLD---RNEDPFDFSV---EKKDPV-------------PFDFDQ------------------------IDDLMRDFYVK--YLKLD---------------------------------------------------------------------------------SVGTISNNHLH-NS---DQ-------------YGLTSTVCMNLAKKNSQAVDFTKSGDP---------PAPLTREWGKDPETGENIPPEGAERI-PDYHMANER--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPV---YVSP------------------------------RLCGRLFREFQAIDNVI----------KISEERDEQFEVQ--IDETLMI---------------------------------------------------------QGY----------EAYMEGARK-DLAN------YNGQLRAIMETYGIR-----------------------------------------------------------------TEGEIMSDCILD---MRNRISDRDQDDKMSFYNTNQMIETRTTALFCRFR----------------------------------------------------------------ENFFK---EFHGFQAACTE-IQNSNDSTNPLNFRCD--------------------------GPSVPMLQKAVAWYRACYEFAQSSR--------------------------ETRKL--SFAWIVF------------------------------------------------DVL-----------------------------------------------------------------------------------------------AKVKEHNMLHGENVEMGGGNPMYIFLEAHRAQYIADNFEEFQEFRTMSCLIE-DDRSVKGVNILRRYMARYDGLDTVLFVLMKWGEAMHLFHNQPIRKYQFFLMFILFATRQIGLADLLSETFIARIVEDDVEN-------ASTVPLTEDKKSHMVCRKEKKRMSKFLEFMACRKFRKLRSISFRALGIPGVYMRGEWHIFHVASIKTYYNILFNLRFEELPISTDPTITLESMIRESEPYTIELPERTEANECLKMLTTKSGCQEVHMRMQSNRAEDKKRADEENVRYMVSARGNVESLQRLKQLTAVTIPIRSHIGGKEVASQMANLCLDKIM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1606]
'gi|46109400|ref|XP 381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1] >gi|42544625|gb|EAA67468.1| hypothetical pro'    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVICRNVPLD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSEDNFKRELLPFMKALNI--SDFYCEKPRRKSQA---------------------------------------------------WIKFL-SAQDGSAFLARHGKQRRCENHG-------------KENIDPSNPLNNFTGSHIFRSVPRDIARLHILKTAVFVEQSTKPVDKYA-------------IAHLKHEREKKKQSTTTSNNKGRH----------------APEKAFQVSAISCGGNTFH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPNEVITFVDHHKLLFRPEA-----VTGKFTSQWLTIQVEH------------------------AHRMDFH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NETIQDLIATRSDM-----------------SITLVLTEPPKMYTY------------------------------------------------------------------------RPPTFERSMQEWSRVHGLHAWGLPADCTLSCLVYRIYFYDT-----------ISFDQVLVTLKNKNILAITNHDLPSVRWI------------------------------------------------------EIGAESNHTIGRQTLVEKSKNLL-------------------TSGRVHFALLFQVQALVWNNFINPASGI------------------------------------KLLDLLECVIEDHKKRKV-AVPVTTDAMKKLFQT--IPYPCPG----TEPKELDVVSIMTNIMD--------AEYEARKDDPERDRIYGGKLP----------PNQIWVFKALVTPTRLLLD----GPEAESKNRVLRKYA-DYNDYFLRVLFCEEGG------------------------------------------QDLRFHPKV----------------DNEPIYSQFRRMMDHGIQI-------AGRKFDFL-GFSH-----------------SSLRSHSAWFSA--PFIDKD----------------------------------------------------RQLQSPEAILQALG---DFRD----IR--VPAKCAARIGQ-----AFSETPYA---------------VPI-FENNI--VPRYIPDVKSE----------------DGS---RVFSDGVGTISQEALEAIWPYLS-------------------MNS----------------------AAPTCLQIRW----GGCKGMLSLDT--------------------------RL----------EGKVFCIRQESMMKF-----KSE----------------------------DTGELGICDT----------ASKPLRLVLNRQMIKILEDMGTRDEW---------FFELQNNALDIL--------RNVTADATNTSSFLEHQAIGINMG---L--------------------PRLVKQLEKMDIDYR--RDKFLKAAVEHVVLREL-RLLKHKARIPVDN--GVTLFGIMDETG--FLKEG---------------------EVYVTYDKTYG-------------------------------RNNSRGIKSTLTDGE-IIVTRSPALHPGDIQLVKQVTP-----------------PQ---------GHSL--RS-----LQNCIVFSQKGK----RDLPSMLSGGDLDGDIYNIIWDPEA--MPS---RVFRPADYPR---VTPQ---------------PLDRQV------------------------EPKDIADFFIN--FMRTD---------------------------------------------------------------------------------ILGVIATRHVI-LA---DY-----------NDLGSIDRDCIALAELHSTAVDFSKTGIP---------VNVKAL--------------PRAPRFRPDFLATAPPLKLYDKGQLA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIGEDDEMDDADDMARTKTNY---YQSE------------------------------KILGQLYRNVDEKKI---------------------------WDEDIHRRI------------------------------NTAGPSVWDQLLTIVENEAIKYKLDIDW----------KRQSQEAWK-IRGL------YESSIEDKRWHFSENPRV------------------------------------------------------------PLTEVEVFCGFILN---KRGAQTRRQGD---ASIKLKEEIDRTMTWIVKQIR----------------------------------------------------------------DRGVG----------------------------------------DGAETLSTVTEADGTTSRWREDVVELCWACVAVSCIKKDNAPELY---------------------HGNGELE--SFHIVAAS-----------------------------------------------CLV-----------------------------------------------------------------------------------------------RELNNLARKMETAAGGGFVGVGCDGRSGRGGRGGKNGIECCLMEIKDMDMDTGMSTEGLCASDDLRQERALNARIHGGSDSVECVSEEHRLDFAQTNTWIVNSKLPDSLAKTIEHQKNKNQFPNRVDPYPSAVPWFSEEDRNRLSNKALLAISAAPRDSNTGVHGRANQLKKIRVPGMRNMTINRDLWQVKASYTRMASLKRNAFTPLLLVATMMTISDKLSAWKCLRYVGI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1467]
'gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVFLHHVPAD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNRHGFKRELQPFMKTLRI--QDFICEKPRKKRFG---------------------------------------------------TITFL-HVDDAERFLQAHGEKPNPLGGF--------------------------------------KSNLKLMGVSVCCKSSRYPPKPFA----------------LRTLEHEAQERAKGHRERPEE------------------SVVFGMQQYSCGRCDFV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEQLTYNPELQWSARGTIKFKTRSMIVHVIP------------------------DCRIRIP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSTIVSLIYSTDG------------------TLTVTLSDVPFFFKV------------------------------------------------------------------------IGTSYNSLGIESSRVRLSNLGNGHDQIVGQCLVYQFKVSVV------------HFRANIEKLKDWEITIYRYNLTTARPLL-----------------------------------------------------CSQAVSVEFHKLLSELAECT-----------------------RNRSVPFGILFQLQALAQNAYLHPTTSR------------------------------------KLAEGLRKRFAEDEAAG--RDPITVDGMRKLFNM--IGWPFPG----DDPRVYEVDFLVATLEA--------NHREIQDGFAYREGLHENT------------VNMTKVHRVNVTPTRITLH----GPEMEPQNRILRKFP-NHHEYFIRVQFCDENG------------------------------------------EDLLFNANV----------------DYKDIFGRFIDIMTRGIQI-------AGRTYNFL-GFSH-----------------SSLRSRAVWFSS--PFVDDN----------------------------------------------------GHMQTYFSIVSAIG---KFSH----IT--SPARCAARIGQ-----AFTETPFM---------------VPL-EKHGV-LVST-IPDLTSP----------------DGS---RVFSDGVGAISREVVASIWADIP-------------------LKR----------------------GNPTCFQIRL----GGAKGMLAADS--------------------------RL----------RTAVIQIR-PSMIKF-----DSE----------------------------DMKNLEICNM----------ASRPYPMVLNRQVIKILEDMGASKDW---------FFQMQNEELTRL--------QSITVSTDKTARFLKDKSVAECIG---L--------------------YRLYRQCYWTRLNYK--KDGFLRAIVEAVVLREL-RLLKHKARIPVKK--GMTLYGVIDETG--FLQEG---------------------EVYVTFDRMEG------------------------------------RYAAPPGPGH-ILVTRSPALHCGDIQRAQNVIP-----------------PE---------DHPL--RY-----HRNCIVFSQKGS----RDLPSKLSGGDLDGDLYHVIWDPEL--ESV---ETFAPADYPR---PTSI---------------DIGRDV------------------------RVDDMAAFFVE--FMRSD---------------------------------------------------------------------------------ILGMIAIRHMV-MA---DQ-----------AASGTRDTSCRLLAGLHSKAVDFSKTGIP---------VNMEDM--------------PRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANYDDDDDDADVEEPYRY---YKSE------------------------------KILGKLYRAIDEQSI---------------------------WRKHVLSES------------------------------ETDEEFFWNSVIDDCLRRCKSLPR-TPK----------EEHLDEAKR-IRAA------YDDAIISAMDTYSDHPTK------------------------------------------------------------PISELEVVIGSIIN---RRGVQTRRQRD---RSNKLHEEFDRIATWITSIMR----------------------------------------------------------------RQEIE---------------------------------------------------------DPDPNGLELSLACLYHGIQGSDSGHRKE----------------------VYGELK--SFRVVAAC-----------------------------------------------ALL-----------------------------------------------------------------------------------------------AELDHRDKADPKNCFTM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1188]
'gi|42569168|ref|NP 179583.3| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNQASSRIRIALSGRIETALENIYRKHN-LTPINDETRQRLSSIPENLGFELVRKVFSLQAGLIYNLDSFIVSKVNQAVSFTGYPQPANSLSP------SGRHVSRVLQEEMSVDSD-------------------------APSPKSLKSEDKGGSLHIPQLV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKVFLLLSYIPGQHV-------------------------------------------------------------------------------------------------GQVITADEIRLWKDLPMVEYEAAVWDRLGRHYC-PQKDRRMLQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVL--GDDNVLTVKFADVQK---------------------------------------------------------------SSSTYSIDHYFTYKGIAKNGIMI-------GLRRYQFF-VFKDGGKEEKKKD--------LSTKKVKCYFIRTDSTA-------------------------------------------------------FYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSL-----ILSKTKTL-------------------EVDMTGITFDQIDDIHCHDQDGKDVL--------DKNKKPCIHSDGTGYISEDLARMCPLNIF-------------------KGKCLRSESI---------QEACYQDPPLLIQFRMFYDGYAVKGTFLLNKK-------------------------L-----------CPRTVQVR-PSMIKV-----SKDPSLS---------------------NFSTFNALEVVTT----------SNPPKRTKLSKNLVALLSYGGIPNEF---------FLDILLNTLEES--------KSIFYNKRAALNAALNYGEMD---------------------------DQNAAQMILVGIPL---DEPHLKNYLSILLKTEK-NDLK-AGKLPVTE--SYYLMGTVDPTG--ALKED---------------------EVCVILESGQI-------------------------------------------SGE-VLVYRNPGLHFGDIHILKATYV-----------------KA------------L--EE-YVGNSKFAVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPEL--LENF--KPSEPWVSLTPPSKSNSGRAPS----------QLSPEE------------------------LEEELFEMFLTAGFHASN---------------------------------------------------------------------------------VIGIAADSWLT-IM---DRFLIL--GDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDK---------VYLPNK--------------LKPDIF-PHYMERDKK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FQST------------------------------SILGLIFDFVKSQTTEEPSPSS------------------------------------EISKLPCFEDEPVSEFH------------------------------------------------------MQKCRLWYDNYRTEMTQAMKTDK---------------------------------------------------------------------------------------------------------DESANEVIQRYK----------------------------------------------------------------QEFYGAAGFEDSK-------------------------------------------------KSLEELYPQALALYKIVYDYAIHAGVSKC-----------------------------RFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELWG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [977]
'gi|34903602|ref|NP 913148.1| P0419B01.14 [Oryza sativa (japonica cultivar-group)]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNPHGGGNQMREPALPAAVGAELERLEARLGQLACAEARRQLAELGEPAAARVLRAIGEARQVRTLSGFIRHMANQER--MKRNARGIPTAHSA-ACISGPCREEESISTPLYYNEVQMDAQTPND----------MVEVGSPNQQMPLRLHDNGGSVGHIARVVPDLANPAVGSPYGRISSVLLQNQNCVEGYTPSRGMVSPASNQVAVQINFPTQPMAHALPNDVMMQVGSPGHRMPSGLQRHMEIDSPIQPIVSTPERVSTPSPVRDLSRCVENMAGPSGS-------------------------PPCPIWVMPQIPPAICPDTTNVLREVVSPQML---------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFRKIFMIFAYLSWNKKGVKPPL-----------------------------------------------------------------------------------STPKSSKIEDVLSVDSIRSLKSMSMAQFESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTVVKIFK---GPYIENRRTHLQKVL--GDDNVLVVKFMEISS---------------------------------------------------------------DTETDLSTYLEHYHKVAEEGIVL-------GLRCYRFF-LYKDGGKENKMKEENREEENKKCTSSVRCYFVRTES---------------------------------------------------------GWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFAL-----IVSKTITL-------------------DVDLSEVLVKLIDDEPCLDEHGKEV---------FRDGERLIHTDGTGLISEDLAQKCTYSNS--------------------------------------KGKLLEPQPLLIQLRLFYNGSAVKGTVLVDKRNTQENFIIYDYVKVVYKKSRIYPCFI-----------QDRTIHIR-PSMLKI-----KTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSYTSRITCHLSNRSGRTFTSNNLIALLHYGGVPEEF---------FMELLQTAIEEA--------DNARFDYAGALNIAFNYADME---------------------------DSMPARMILSGIPL---EESYLQSRLDFLSLLER-KGIK-NGKIPIDD--CYYLMGTADPTG--KLGPN---------------------EVCVILDYGQV-------------------------------------------SGD-VLVYKYPGLHPGDIHVLKATYS-----------------SD------------I--EK-VVGNSKHAILFPTTGQ----RSLADEMANSDFDGDIYWVSLNPKL--LEHF--KPSKPWVPAITPNGTKQ-KGPE----------DFNESE------------------------LERVLFHEFLKTRFAPSY---------------------------------------------------------------------------------ARATAATNWLV-YM---DRLLTV--SLDE-SEKKLIEKKMLKLVDLYYLALDAPKMGNK---------VNIPRD--------------LMVKQY-PHFMDRSPS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHSS------------------------------SILGKIYDKAGDPKPLR----------------------------------SDNVQPTSISSLPCFAERDVPPAI------------------------------------------------------KQLWQHRYNEYLADSSLLYAEEADE----------------------------------------------------------------------------------------------------EEKKIKFQELYEKYK----------------------------------------------------------------HLLYGASEFEETP-------------------------------------------------RDLDDVFSEACAIYQIAYEKARSANNVARC----------------------------GFAWKVAGRALCHFYTVKNEGNAVVCSLQLLRNFRFTKKYRK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1222]
'gi|34903600|ref|NP 913147.1| P0419B01.13 [Oryza sativa (japonica cultivar-group)]'                                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYNPIGSAEAREPAELPAAVAAELERLEGRLRQLAGAEARRHLAVLGEAGAARVLRAVAESRRVRTLPGFIKYLAKREAAITRRDARGVPTALSAPAFISGPSREEESVYTQLFDNEVQMYDQSPSNEMATSLSNHGMVEVGSPNQQMPFHLHGNGGSVRQIARLVPQLAQLTVESPCGHTSSV-SQNQGCIEVGTPTQAM-----------IDSPARAMAPAVPNDVMMQVGSPCRCMPSGLQNYIEIDSPIQPMISTPRRVSTPSSVQDISRLIENMAGPSVS-------------------------PPSPITAMPQNPTTTCHTTDNALREAASPQML---------------------------------------------------------------------------------------------------------------------------------------------------------------------ALEELGFRKIFMVFAYLASEKI-------------------------------------------------------------------------------------------------ENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAASDRAK-------------------------------GPYIENTRTHLQKVV--GDDNVLVVKFMGKLS---------------------------------------------------------------DTKTDFSTYCEHYHKVAEDGIVL-------GLRRYRFF-VYKDGGKEEKLKQEKIEDKN-KCTSPVMCYFVRTES---------------------------------------------------------GWNMDEPYILSGRTVGQARELFMHISSAPTLAKYMARFAL-----ILSKTITW-------------------DADLSAVYVRRIKDEPCMDRHGNVV---------HKDQEPLIHTDGTGLVSVDLALNCPTSIF--------------------------------------KGKFLKPQPLLMQFRLFYNGSAVKGTVLVDRR-------------------------L-----------PPATILIR-PSMVKI-----ETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVST----------SNRPRRTLTSRFLITLLCYGGVPEEY---------FLELLQSAIEGA--------ENACYDYEDALRIAFSYADME---------------------------DSMSARMILSGIPL---EESYLQHRLDFMAQQER-KGIK-QGKIPIDE--CYYLMDTTDPTG--TLRPN---------------------EVCVILENGQF-------------------------------------------SGD-VLVYKHPGLHFGDIHVLKATYI-----------------RD------------L--EKEYVGYAKYAILFPISGP----RSLADEMANSDFDGDIYWVSKNPKL--LEHF--KPSEPWVQAIKPKKTKQ-KKPQ----------DCNESK------------------------LERLLFHEFLKTRFTPSF---------------------------------------------------------------------------------ALGTAADSWLA-YM---DRLLTD--SLDE-IEKKLIEEKMLKLVDLYYLALDAPKTGNK---------VNIPSD--------------LMVKQY-PHFMGRSFS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YHSS------------------------------SILGQIYDKAEDVESLR----------------------------------SCNVQPIGVSLLPCFMEREAPPAA------------------------------------------------------RHLWQHRYEEYLTDSTMLYRAMVDK----------------------------------------------------------------------------------------------------EERNMKFQELYEKYK----------------------------------------------------------------HMLYDASEFEQTQ-------------------------------------------------RDPDDVFSEACVIYQIVYEKARWSNDASRC----------------------------GFAWKVAGRALCHFYALKNEGDTALCSLPLLRKI-IKKDHRRNQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [1148]
'gi|42569166|ref|NP 179582.2| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMTTTMDYNSSDQGFSWSEIALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPN--VKTLDGIIIYFLNDAVTVDGSPRLWSGESPVQFPRTPGKKSCRASQAEVSLDRE-------------------------DPSPKFLRGDENGESKHISLLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKAFLLLTYLGG------KSL-------------------------------------------------------------------------------------------GEVISGDEIRQWKDLPMVAYERAVWFKLGQ-----NEERMQLESDSGKTHYYQCHVAPDGSYRLK------GYFLENTGTHLHKVL--GDDNVLTVRFDQLPK----------------------------------------------------------------ESTYCDNPYSKYKEIAKNGIMV-------GLRRYQFF-VFKDGGKAEKKKR--------NSTKQVKCYFIRTGSTA-------------------------------------------------------SSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSL-----ILSKTKKL-------------------EVDMTEITVMQIDDIHCHDQSNNDVL--------DKNGKPRIHSDGTGYISEDLARMCPLNIF-------------------KGKSMRSNNI---------QGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKN-------------------------L-----------PPQTVQVR-PSMIKV-----YKDKNLS---------------------NFSTFNSLEVVTT----------SNPPKRAKLSKNLVALLSYGGVPNDF---------FLDILLNTLEKK--------KTIFFKVRAAGKAALHYGNMD---------------------------DKNALQMIMAGIPL---DEPYLKHYLSKLLKLEK-DDLK-AGKLPIDE--SYYLMGTVDPTG--ELKED---------------------EVSGLAK-----------------------------------------------SQD-VLVYRNPGLHFGDIHILKATYV-----------------KS------------L--EQ-YVGNSKYGVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPKL--LEHY--KPSEPWVSSSPRSKIYTGRQPS----------ELSPEQ------------------------LEEELFKIFLKTGFSPSS---------------------------------------------------------------------------------VIGQAADSWLA-IM---DRFLTL--GDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTE---------VNLPLD--------------VKVDLF-PHYMERNKT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKST------------------------------SILGLIFDTVDFHNAEDTTPS-------------------------------------GISKLQCFEDEPVSEFD------------------------------------------------------MEKCKLWHKDYRKEMCQAMNSDD---------------------------------------------------------------------------------------------------------DDSCNEVIQKYK----------------------------------------------------------------QEFYSAAGFKESK-------------------------------------------------KILEELYPKALALYNVT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [927]
'gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMNNGCDEVSPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPY--LKTLDGLIMYFVKGTVTVDGSPRLSPGESPVQSPRTPAKKSCRASQ-DVSLDLE-------------------------TPSPKFMKREENGGSKYIPPLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKAFLLLSYIGGESLV------------------------------------------------------------------------------------------------EEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFK------GHLLENTGTHLHKVL--GDDNVLTVKFDKVLG----------------------------------------------------------------VETYCNDLYSTYKGIAKNGIMV-------GLRRYRFF-VFKDGGKEEKKKD--------VSTKGVKCYFIRTDSTA-------------------------------------------------------SIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRYSI--------------------------------------------------DQDDKDVL--------DKNGKPCIHSDGTGYISEDLARMCPVNIF-------------------KGKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKK-------------------------L-----------PPRTVQVR-PSMIKV-----YEDRTLS---------------------NLSTFNSLEVVTT----------SNPPRKARLSRNLVALLSYGGVPNDF---------FLNILRNTLEES--------KTIFYSERAAFKAAINYGD-----------------------------DQYTADMILVGIPL---DEPYLKDRLSYLLKTER-NALK-AGRFPIDE--SYYIMGTVDPTG--ELKEN---------------------EICVILHSGQI-------------------------------------------SGD-VLVYRNPGLHFGDIHVLKATYV-----------------KA------------L--ED-YVGNAKFAVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPKL--LEHF--KPSEPWVSSSKPSKIYCGRKPS----------ELSEEE------------------------LEEELFKMFLKARFCKRD---------------------------------------------------------------------------------VIGMAADCWLG-IM---DPFLTL--GDESAKEKYERKKNILKLIDIYYDALDAPKKGAK---------VDLPPD--------------LEIKNF-PHYMERDPKRD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRST------------------------------SILGLIFDTVDSHNAEEPPPS-------------------------------------EISKLWYFEDEPVPKSH------------------------------------------------------MDKFTSWYENYRSEMSQAMMETD-----------------------------------------------------------------------------------------------------KVKRNQLTNEVIQRYK----------------------------------------------------------------QDFYGAAGFEDSN-------------------------------------------------KSLEELYPQALALYNVVYDYAIQEGVAKC-----------------------------TFAWNVAGPVLCKFYL-KKTKDKSVVASTSVLKKLLG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [966]
'gi|42569164|ref|NP 179581.2| RNA-directed RNA polymerase [Arabidopsis thaliana]'                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMNNGCDEVSPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPY--LKTLDGLIMYFVKGTVTVDGSPRLSPGESPVQSPRTPAKKSCRASQ-DVSLDLE-------------------------TPSPKFMKREENGGSKYIPPLL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGELEFKKAFLLLSYIGGESLV------------------------------------------------------------------------------------------------EEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFK------GHLLENTGTHLHKVL--GDDNVLTVKFDKVLG----------------------------------------------------------------VETYCNDLYSTYKGIAKNGIMV-------GLRRYRFF-VFKDGGKEEKKKD--------VSTKGVKCYFIRTDSTA-------------------------------------------------------SIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSL-----ILSKTKTL-------------------EVDMTGITFEQIDDIHCHDQDDKDVL--------DKNGKPCIHSDGTGYISEDLARMCPVNIF-------------------KGKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKK-------------------------L-----------PPRTVQVR-PSMIKV-----YEDRTLS---------------------NLSTFNSLEVVTT----------SNPPRKARLSRNLVALLSYGGVPNDF---------FLNILRNTLEES--------KTIFYSERAAFKAAINYGD-----------------------------DQYTADMILVGIPL---DEPYLKDRLSYLLKTER-NALK-AGRFPIDE--SYYIMGTVDPTG--ELKEN---------------------EICVILHSGQI-------------------------------------------SGD-VLVYRNPGLHFGDIHVLKATYV-----------------KA------------L--ED-YVGNAKFAVFFPQKGP----RSLGDEIAGGDFDGDMYFISRNPKL--LEHF--KPSEPWVSSSKPSKIYCGRKPS----------ELSEEE------------------------LEEELFKMFLKARFCKRD---------------------------------------------------------------------------------VIGMAADCWLG-IM---DPFLTL--GDESAKEKYERKKNILKLIDIYYDALDAPKKGAK---------VDLPPD--------------LEIKNF-PHYMERDPKRD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRST------------------------------SILGLIFDTVDSHNAEEPPPS-------------------------------------EISKLWYFEDEPVPKSH------------------------------------------------------MDKFTSWYENYRSEMSQAMMETD-----------------------------------------------------------------------------------------------------KVKRNQLTNEVIQRYK----------------------------------------------------------------QDFYGAAGFEDSN-------------------------------------------------KSLEELYPQALALYNVVYDYAIQEGVAKC-----------------------------TFAWNVAGPVLCKFYL-KKTKDKSVVASTSVLKKLLG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [992]
;
END;


BEGIN CODONS;
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END;


BEGIN ASSUMPTIONS;
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END;


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