SOLiD DGE experiments

This page allows the viewing and downloading the data of SOLiD 5'-DGE experiments of Physcomitrella patens.

Please cite the forthcoming paper when you use these data.

Datasets

Tag counts on each gene

The raw count and TPM values for each genemodel are available. Note that the file is compressed with xz.

experiment/timepointfilename
test1test1.counts.xz
test2test2.counts.xz
Rep1/0hRep1_0h.counts.xz
Rep1/1hRep1_1h.counts.xz
Rep1/3hRep1_3h.counts.xz
Rep1/6hRep1_6h.counts.xz
Rep1/12hRep1_12h.counts.xz
Rep1/24hRep1_24h.counts.xz
Rep2/0hRep2_0h.counts.xz
Rep2/1hRep2_1h.counts.xz
Rep2/3hRep2_3h.counts.xz
Rep2/6hRep2_6h.counts.xz
Rep2/12hRep2_12h.counts.xz
Rep2/24hRep2_24h.counts.xz
Rep3/0hRep3_0h.counts.xz
Rep3/1hRep3_1h.counts.xz
Rep3/3hRep3_3h.counts.xz
Rep3/6hRep3_6h.counts.xz
Rep3/12hRep3_12h.counts.xz
Rep3/24hRep3_24h.counts.xz

Raw sequences mapped on the reference genome

Here are the mapping results on the concatenated reference genome.

experiment/timepointfilename
test1test1_F3.csfasta.ma.25.2.xz
test2test2_F3.csfasta.ma.25.2.xz
Rep1/0hRep1_0h_F3.csfasta.ma.25.2.xz
Rep1/1hRep1_1h_F3.csfasta.ma.25.2.xz
Rep1/3hRep1_3h_F3.csfasta.ma.25.2.xz
Rep1/6hRep1_6h_F3.csfasta.ma.25.2.xz
Rep1/12hRep1_12h_F3.csfasta.ma.25.2.xz
Rep1/24hRep1_24h_F3.csfasta.ma.25.2.xz
Rep2/0hRep2_0h_F3.csfasta.ma.25.2.xz
Rep2/1hRep2_1h_F3.csfasta.ma.25.2.xz
Rep2/3hRep2_3h_F3.csfasta.ma.25.2.xz
Rep2/6hRep2_6h_F3.csfasta.ma.25.2.xz
Rep2/12hRep2_12h_F3.csfasta.ma.25.2.xz
Rep2/24hRep2_24h_F3.csfasta.ma.25.2.xz
Rep3/0hRep3_0h_F3.csfasta.ma.25.2.xz
Rep3/1hRep3_1h_F3.csfasta.ma.25.2.xz
Rep3/3hRep3_3h_F3.csfasta.ma.25.2.xz
Rep3/6hRep3_6h_F3.csfasta.ma.25.2.xz
Rep3/12hRep3_12h_F3.csfasta.ma.25.2.xz
Rep3/24hRep3_24h_F3.csfasta.ma.25.2.xz

If you want the quality scores, please download from DRA.