This page allows the viewing and downloading the data of SOLiD 5'-DGE experiments of Physcomitrella patens.
Please cite the forthcoming paper when you use these data.
The raw count and TPM values for each genemodel are available. Note that the file is compressed with xz.
experiment/timepoint | filename |
---|---|
test1 | test1.counts.xz |
test2 | test2.counts.xz |
Rep1/0h | Rep1_0h.counts.xz |
Rep1/1h | Rep1_1h.counts.xz |
Rep1/3h | Rep1_3h.counts.xz |
Rep1/6h | Rep1_6h.counts.xz |
Rep1/12h | Rep1_12h.counts.xz |
Rep1/24h | Rep1_24h.counts.xz |
Rep2/0h | Rep2_0h.counts.xz |
Rep2/1h | Rep2_1h.counts.xz |
Rep2/3h | Rep2_3h.counts.xz |
Rep2/6h | Rep2_6h.counts.xz |
Rep2/12h | Rep2_12h.counts.xz |
Rep2/24h | Rep2_24h.counts.xz |
Rep3/0h | Rep3_0h.counts.xz |
Rep3/1h | Rep3_1h.counts.xz |
Rep3/3h | Rep3_3h.counts.xz |
Rep3/6h | Rep3_6h.counts.xz |
Rep3/12h | Rep3_12h.counts.xz |
Rep3/24h | Rep3_24h.counts.xz |
Here are the mapping results on the concatenated reference genome.
experiment/timepoint | filename |
---|---|
test1 | test1_F3.csfasta.ma.25.2.xz |
test2 | test2_F3.csfasta.ma.25.2.xz |
Rep1/0h | Rep1_0h_F3.csfasta.ma.25.2.xz |
Rep1/1h | Rep1_1h_F3.csfasta.ma.25.2.xz |
Rep1/3h | Rep1_3h_F3.csfasta.ma.25.2.xz |
Rep1/6h | Rep1_6h_F3.csfasta.ma.25.2.xz |
Rep1/12h | Rep1_12h_F3.csfasta.ma.25.2.xz |
Rep1/24h | Rep1_24h_F3.csfasta.ma.25.2.xz |
Rep2/0h | Rep2_0h_F3.csfasta.ma.25.2.xz |
Rep2/1h | Rep2_1h_F3.csfasta.ma.25.2.xz |
Rep2/3h | Rep2_3h_F3.csfasta.ma.25.2.xz |
Rep2/6h | Rep2_6h_F3.csfasta.ma.25.2.xz |
Rep2/12h | Rep2_12h_F3.csfasta.ma.25.2.xz |
Rep2/24h | Rep2_24h_F3.csfasta.ma.25.2.xz |
Rep3/0h | Rep3_0h_F3.csfasta.ma.25.2.xz |
Rep3/1h | Rep3_1h_F3.csfasta.ma.25.2.xz |
Rep3/3h | Rep3_3h_F3.csfasta.ma.25.2.xz |
Rep3/6h | Rep3_6h_F3.csfasta.ma.25.2.xz |
Rep3/12h | Rep3_12h_F3.csfasta.ma.25.2.xz |
Rep3/24h | Rep3_24h_F3.csfasta.ma.25.2.xz |
If you want the quality scores, please download from DRA.